Query 028493
Match_columns 208
No_of_seqs 115 out of 1672
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 12:22:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 2.8E-39 6E-44 276.1 12.6 160 20-202 1-161 (339)
2 KOG0022 Alcohol dehydrogenase, 100.0 1.5E-37 3.3E-42 259.0 14.9 187 17-205 2-189 (375)
3 COG1062 AdhC Zn-dependent alco 100.0 1.8E-37 3.9E-42 261.6 13.9 180 22-204 2-181 (366)
4 KOG0023 Alcohol dehydrogenase, 100.0 8.6E-35 1.9E-39 243.3 12.8 171 15-201 2-175 (360)
5 KOG0024 Sorbitol dehydrogenase 100.0 1.9E-33 4.1E-38 235.6 10.6 157 21-201 3-163 (354)
6 TIGR02818 adh_III_F_hyde S-(hy 100.0 2.7E-30 5.9E-35 225.6 14.9 177 23-201 2-178 (368)
7 PLN02740 Alcohol dehydrogenase 100.0 3.8E-30 8.1E-35 225.7 14.5 185 17-201 5-191 (381)
8 cd08281 liver_ADH_like1 Zinc-d 100.0 1.3E-29 2.9E-34 221.3 14.9 176 23-201 1-184 (371)
9 cd08301 alcohol_DH_plants Plan 100.0 1.7E-29 3.7E-34 220.2 15.3 178 22-201 2-180 (369)
10 cd08300 alcohol_DH_class_III c 100.0 2E-29 4.2E-34 220.0 15.2 179 21-201 1-179 (368)
11 PLN02586 probable cinnamyl alc 100.0 6.9E-29 1.5E-33 216.4 14.5 167 14-200 4-175 (360)
12 TIGR02819 fdhA_non_GSH formald 100.0 1.1E-28 2.3E-33 217.7 14.8 161 22-200 2-178 (393)
13 cd08239 THR_DH_like L-threonin 100.0 1.5E-28 3.2E-33 211.5 14.1 156 23-200 1-156 (339)
14 cd08277 liver_alcohol_DH_like 100.0 2.6E-28 5.6E-33 212.7 15.0 176 22-201 2-177 (365)
15 PLN02827 Alcohol dehydrogenase 100.0 9.9E-28 2.2E-32 210.4 15.8 176 19-200 9-185 (378)
16 TIGR03451 mycoS_dep_FDH mycoth 100.0 5.1E-28 1.1E-32 210.3 13.6 168 22-201 1-169 (358)
17 cd08299 alcohol_DH_class_I_II_ 99.9 5.1E-27 1.1E-31 205.4 16.1 181 18-201 3-183 (373)
18 COG1063 Tdh Threonine dehydrog 99.9 3.5E-27 7.6E-32 205.2 12.7 155 23-199 1-159 (350)
19 PLN02178 cinnamyl-alcohol dehy 99.9 9.8E-27 2.1E-31 204.0 14.4 156 25-200 9-169 (375)
20 PRK09880 L-idonate 5-dehydroge 99.9 5.9E-27 1.3E-31 202.5 12.8 160 20-201 2-163 (343)
21 cd08230 glucose_DH Glucose deh 99.9 2.3E-26 5E-31 199.6 15.1 142 23-186 1-145 (355)
22 TIGR02822 adh_fam_2 zinc-bindi 99.9 1.2E-26 2.6E-31 199.9 13.1 153 26-201 2-159 (329)
23 PLN02514 cinnamyl-alcohol dehy 99.9 2.2E-26 4.9E-31 200.2 14.8 164 21-200 8-172 (357)
24 TIGR03201 dearomat_had 6-hydro 99.9 1.1E-25 2.5E-30 194.9 13.1 152 26-200 2-159 (349)
25 cd05279 Zn_ADH1 Liver alcohol 99.9 3.6E-25 7.8E-30 193.0 14.7 176 23-201 1-176 (365)
26 PF08240 ADH_N: Alcohol dehydr 99.9 1.5E-25 3.3E-30 163.8 10.4 109 47-177 1-109 (109)
27 PRK10309 galactitol-1-phosphat 99.9 5.3E-25 1.1E-29 190.3 13.5 151 23-199 1-152 (347)
28 cd08237 ribitol-5-phosphate_DH 99.9 6.9E-25 1.5E-29 189.7 12.1 148 23-200 3-153 (341)
29 cd08231 MDR_TM0436_like Hypoth 99.9 1.4E-24 3E-29 188.5 13.8 161 24-201 2-170 (361)
30 cd08233 butanediol_DH_like (2R 99.9 2.6E-24 5.6E-29 186.1 13.6 154 23-200 1-165 (351)
31 cd08278 benzyl_alcohol_DH Benz 99.9 2.9E-24 6.2E-29 187.3 13.7 179 21-202 1-180 (365)
32 PRK10083 putative oxidoreducta 99.9 4.1E-24 8.8E-29 183.6 13.5 152 23-199 1-152 (339)
33 cd08296 CAD_like Cinnamyl alco 99.9 5.5E-24 1.2E-28 182.9 14.2 155 23-200 1-156 (333)
34 COG0604 Qor NADPH:quinone redu 99.9 1.3E-24 2.7E-29 187.5 10.2 134 23-202 1-136 (326)
35 cd08285 NADP_ADH NADP(H)-depen 99.9 5.8E-24 1.2E-28 183.9 14.2 157 23-200 1-159 (351)
36 cd08283 FDH_like_1 Glutathione 99.9 8.8E-24 1.9E-28 185.7 14.7 173 23-200 1-177 (386)
37 cd05284 arabinose_DH_like D-ar 99.9 6.7E-24 1.5E-28 182.2 13.6 157 23-201 1-159 (340)
38 cd08279 Zn_ADH_class_III Class 99.9 2.1E-23 4.5E-28 181.6 15.4 174 23-201 1-175 (363)
39 PRK13771 putative alcohol dehy 99.9 1.9E-23 4.2E-28 179.0 14.4 155 23-200 1-155 (334)
40 cd05278 FDH_like Formaldehyde 99.9 2E-23 4.4E-28 179.5 14.1 157 23-200 1-160 (347)
41 cd08259 Zn_ADH5 Alcohol dehydr 99.9 4E-23 8.6E-28 176.0 14.5 156 23-201 1-156 (332)
42 cd08264 Zn_ADH_like2 Alcohol d 99.9 3.3E-23 7.3E-28 176.8 13.1 155 23-201 1-156 (325)
43 PRK09422 ethanol-active dehydr 99.9 7.1E-23 1.5E-27 175.7 14.3 154 23-200 1-155 (338)
44 cd08256 Zn_ADH2 Alcohol dehydr 99.9 6.7E-23 1.5E-27 177.2 13.6 154 23-200 1-167 (350)
45 cd08240 6_hydroxyhexanoate_dh_ 99.9 8.7E-23 1.9E-27 176.4 13.4 157 23-201 1-168 (350)
46 cd05283 CAD1 Cinnamyl alcohol 99.9 1.1E-22 2.4E-27 175.2 13.7 161 24-200 1-162 (337)
47 cd08266 Zn_ADH_like1 Alcohol d 99.9 1.2E-22 2.6E-27 172.9 13.3 156 23-200 1-158 (342)
48 cd08298 CAD2 Cinnamyl alcohol 99.9 1.6E-22 3.4E-27 173.0 13.1 155 23-200 1-160 (329)
49 cd08260 Zn_ADH6 Alcohol dehydr 99.9 2.6E-22 5.6E-27 173.0 14.3 156 23-201 1-158 (345)
50 cd08282 PFDH_like Pseudomonas 99.9 4.8E-22 1E-26 173.9 15.6 163 23-200 1-169 (375)
51 cd08286 FDH_like_ADH2 formalde 99.9 3.1E-22 6.7E-27 172.5 13.4 155 23-200 1-158 (345)
52 cd08238 sorbose_phosphate_red 99.9 3.5E-22 7.5E-27 177.0 14.0 135 21-189 1-146 (410)
53 cd08246 crotonyl_coA_red croto 99.9 2.7E-22 5.9E-27 176.3 13.1 161 19-201 9-184 (393)
54 TIGR01751 crot-CoA-red crotony 99.9 6.9E-22 1.5E-26 174.2 13.2 161 19-201 4-180 (398)
55 PRK05396 tdh L-threonine 3-deh 99.9 7.6E-22 1.6E-26 169.9 12.9 153 23-198 1-155 (341)
56 cd08263 Zn_ADH10 Alcohol dehyd 99.9 1.1E-21 2.4E-26 170.9 13.8 176 23-201 1-180 (367)
57 cd08245 CAD Cinnamyl alcohol d 99.9 1.1E-21 2.4E-26 167.8 13.4 154 24-200 1-155 (330)
58 cd08284 FDH_like_2 Glutathione 99.9 1.2E-21 2.5E-26 168.5 13.5 158 23-201 1-161 (344)
59 cd08254 hydroxyacyl_CoA_DH 6-h 99.9 9.7E-22 2.1E-26 168.0 12.8 157 23-201 1-158 (338)
60 cd08287 FDH_like_ADH3 formalde 99.9 1.9E-21 4E-26 167.5 13.9 153 23-200 1-161 (345)
61 PLN02702 L-idonate 5-dehydroge 99.9 2.9E-21 6.3E-26 168.1 13.9 155 22-200 17-174 (364)
62 TIGR01202 bchC 2-desacetyl-2-h 99.9 1.7E-21 3.6E-26 166.4 12.0 136 22-201 1-139 (308)
63 KOG0025 Zn2+-binding dehydroge 99.9 7.4E-22 1.6E-26 163.5 9.4 143 14-204 11-156 (354)
64 cd08235 iditol_2_DH_like L-idi 99.9 5.2E-21 1.1E-25 164.5 13.7 153 23-200 1-158 (343)
65 cd08261 Zn_ADH7 Alcohol dehydr 99.9 7E-21 1.5E-25 163.5 13.7 152 23-200 1-152 (337)
66 cd08297 CAD3 Cinnamyl alcohol 99.9 9.7E-21 2.1E-25 162.8 14.1 157 23-201 1-159 (341)
67 cd08236 sugar_DH NAD(P)-depend 99.9 6.5E-21 1.4E-25 164.0 12.9 152 23-200 1-152 (343)
68 cd08242 MDR_like Medium chain 99.9 8.4E-21 1.8E-25 161.8 13.0 146 23-199 1-147 (319)
69 cd08258 Zn_ADH4 Alcohol dehydr 99.8 8.2E-21 1.8E-25 161.8 12.5 155 23-201 1-157 (306)
70 cd08232 idonate-5-DH L-idonate 99.8 1E-20 2.3E-25 162.5 12.2 155 27-200 2-158 (339)
71 cd08234 threonine_DH_like L-th 99.8 1.6E-20 3.5E-25 160.7 13.2 152 23-200 1-152 (334)
72 cd05285 sorbitol_DH Sorbitol d 99.8 1.4E-20 3.1E-25 162.3 12.5 153 25-200 1-155 (343)
73 cd08265 Zn_ADH3 Alcohol dehydr 99.8 1.6E-20 3.4E-25 164.9 13.0 156 21-201 27-195 (384)
74 cd08291 ETR_like_1 2-enoyl thi 99.8 8.9E-21 1.9E-25 162.3 10.9 129 23-199 1-135 (324)
75 cd05281 TDH Threonine dehydrog 99.8 2.4E-20 5.2E-25 160.7 12.8 155 23-200 1-157 (341)
76 KOG1197 Predicted quinone oxid 99.8 5.2E-21 1.1E-25 156.2 8.0 133 18-200 4-138 (336)
77 cd08262 Zn_ADH8 Alcohol dehydr 99.8 3.2E-20 7E-25 159.5 12.8 143 23-200 1-154 (341)
78 cd08274 MDR9 Medium chain dehy 99.8 1.2E-19 2.6E-24 156.3 12.8 148 23-200 1-170 (350)
79 cd08292 ETR_like_2 2-enoyl thi 99.8 9.8E-20 2.1E-24 154.9 11.9 129 23-200 1-132 (324)
80 TIGR00692 tdh L-threonine 3-de 99.8 1.1E-19 2.3E-24 156.6 12.0 150 29-201 5-156 (340)
81 TIGR02817 adh_fam_1 zinc-bindi 99.8 2.5E-19 5.5E-24 153.4 9.8 131 24-201 1-136 (336)
82 cd08290 ETR 2-enoyl thioester 99.8 3.9E-19 8.4E-24 152.7 9.9 131 23-201 1-139 (341)
83 cd05280 MDR_yhdh_yhfp Yhdh and 99.8 1.4E-18 3E-23 147.8 12.6 133 23-200 1-135 (325)
84 cd08276 MDR7 Medium chain dehy 99.8 5.6E-18 1.2E-22 144.3 13.9 151 23-201 1-153 (336)
85 cd08248 RTN4I1 Human Reticulon 99.8 3E-18 6.4E-23 147.6 10.9 132 23-200 1-150 (350)
86 TIGR03366 HpnZ_proposed putati 99.8 1E-18 2.2E-23 147.2 7.2 106 80-200 1-113 (280)
87 cd08249 enoyl_reductase_like e 99.8 6.7E-18 1.4E-22 145.6 11.8 137 23-202 1-138 (339)
88 PRK10754 quinone oxidoreductas 99.8 4.3E-18 9.3E-23 145.4 10.2 131 22-201 1-133 (327)
89 TIGR02823 oxido_YhdH putative 99.7 1.5E-17 3.2E-22 141.8 12.9 132 24-200 1-134 (323)
90 cd08289 MDR_yhfp_like Yhfp put 99.7 1.3E-17 2.9E-22 142.0 12.2 133 23-200 1-135 (326)
91 cd05188 MDR Medium chain reduc 99.7 6.4E-18 1.4E-22 139.3 9.5 127 49-201 1-127 (271)
92 PTZ00354 alcohol dehydrogenase 99.7 1.2E-17 2.6E-22 142.3 11.1 130 22-200 1-132 (334)
93 cd08250 Mgc45594_like Mgc45594 99.7 2.4E-17 5.1E-22 140.8 12.6 128 22-201 1-132 (329)
94 cd08270 MDR4 Medium chain dehy 99.7 2.1E-17 4.5E-22 139.5 11.5 124 23-200 1-125 (305)
95 cd08293 PTGR2 Prostaglandin re 99.7 3.6E-17 7.8E-22 140.8 11.4 116 35-201 23-145 (345)
96 cd08273 MDR8 Medium chain dehy 99.7 5.1E-17 1.1E-21 138.6 12.1 128 24-200 2-131 (331)
97 cd08288 MDR_yhdh Yhdh putative 99.7 6.3E-17 1.4E-21 137.8 12.6 133 23-200 1-135 (324)
98 cd08244 MDR_enoyl_red Possible 99.7 6.6E-17 1.4E-21 137.4 12.0 130 23-199 1-134 (324)
99 cd08252 AL_MDR Arginate lyase 99.7 4.4E-17 9.5E-22 139.4 10.8 132 23-201 1-137 (336)
100 cd08247 AST1_like AST1 is a cy 99.7 7.6E-17 1.7E-21 139.4 12.2 133 24-200 2-142 (352)
101 cd08271 MDR5 Medium chain dehy 99.7 1.2E-16 2.6E-21 135.3 12.3 131 23-200 1-133 (325)
102 cd05276 p53_inducible_oxidored 99.7 1E-16 2.2E-21 134.8 11.2 129 23-200 1-131 (323)
103 cd08253 zeta_crystallin Zeta-c 99.7 1.5E-16 3.2E-21 134.1 12.2 135 23-201 1-137 (325)
104 cd08295 double_bond_reductase_ 99.7 6.4E-17 1.4E-21 139.3 10.1 128 22-201 7-144 (338)
105 cd08243 quinone_oxidoreductase 99.7 1.6E-16 3.4E-21 134.4 12.0 133 23-201 1-135 (320)
106 cd08272 MDR6 Medium chain dehy 99.7 1.8E-16 3.9E-21 134.0 11.1 134 23-200 1-136 (326)
107 cd08268 MDR2 Medium chain dehy 99.7 4.8E-16 1E-20 131.3 12.0 134 23-200 1-136 (328)
108 cd08294 leukotriene_B4_DH_like 99.7 5.3E-16 1.2E-20 132.3 11.0 121 22-201 2-136 (329)
109 cd05282 ETR_like 2-enoyl thioe 99.6 1.2E-15 2.6E-20 129.5 10.2 117 35-200 14-130 (323)
110 cd05289 MDR_like_2 alcohol deh 99.6 1.6E-15 3.4E-20 127.1 10.2 132 23-200 1-136 (309)
111 TIGR02825 B4_12hDH leukotriene 99.6 1.6E-15 3.4E-20 129.9 10.2 108 35-201 19-131 (325)
112 PLN03154 putative allyl alcoho 99.6 2.8E-15 6.1E-20 130.2 11.6 128 21-201 7-151 (348)
113 cd08275 MDR3 Medium chain dehy 99.6 4.2E-15 9.1E-20 126.5 12.1 128 24-200 1-130 (337)
114 TIGR02824 quinone_pig3 putativ 99.6 6.1E-15 1.3E-19 124.4 11.5 129 23-200 1-131 (325)
115 cd05286 QOR2 Quinone oxidoredu 99.6 1E-14 2.2E-19 122.5 11.6 127 24-201 1-129 (320)
116 cd08269 Zn_ADH9 Alcohol dehydr 99.6 7.8E-15 1.7E-19 124.0 10.2 119 29-200 2-122 (312)
117 cd08251 polyketide_synthase po 99.6 7.8E-15 1.7E-19 122.7 9.5 112 42-200 2-113 (303)
118 cd08267 MDR1 Medium chain dehy 99.6 1.4E-14 3E-19 122.4 9.4 119 36-200 15-135 (319)
119 cd08241 QOR1 Quinone oxidoredu 99.5 4E-14 8.7E-19 119.1 11.3 129 23-201 1-132 (323)
120 cd05288 PGDH Prostaglandin deh 99.5 1.5E-13 3.4E-18 117.1 10.4 124 24-201 3-138 (329)
121 KOG1198 Zinc-binding oxidoredu 99.4 7.7E-13 1.7E-17 115.0 9.6 120 35-203 20-146 (347)
122 cd05195 enoyl_red enoyl reduct 99.4 7.6E-13 1.7E-17 109.3 8.8 100 48-200 1-100 (293)
123 smart00829 PKS_ER Enoylreducta 99.3 4.9E-12 1.1E-16 104.6 7.4 95 52-200 2-96 (288)
124 COG2130 Putative NADP-dependen 99.2 7.1E-11 1.5E-15 99.3 7.9 115 35-203 27-145 (340)
125 cd08255 2-desacetyl-2-hydroxye 98.9 1.5E-09 3.2E-14 90.6 5.5 77 69-200 14-90 (277)
126 KOG1196 Predicted NAD-dependen 98.1 4.2E-05 9.1E-10 64.7 10.5 113 35-201 22-146 (343)
127 KOG1202 Animal-type fatty acid 97.6 4.8E-05 1E-09 74.1 3.6 111 35-204 1429-1548(2376)
128 PF13823 ADH_N_assoc: Alcohol 95.6 0.014 3E-07 30.4 2.4 22 23-45 1-22 (23)
129 PTZ00414 10 kDa heat shock pro 86.9 1.5 3.2E-05 31.5 4.5 22 86-107 46-71 (100)
130 PRK14533 groES co-chaperonin G 81.8 2.9 6.3E-05 29.4 4.1 23 85-107 36-62 (91)
131 PRK00364 groES co-chaperonin G 80.6 2.2 4.8E-05 30.2 3.3 24 85-108 36-68 (95)
132 cd00320 cpn10 Chaperonin 10 Kd 77.4 2.9 6.2E-05 29.5 3.0 24 85-108 35-67 (93)
133 PF00166 Cpn10: Chaperonin 10 73.9 5.4 0.00012 28.0 3.7 24 85-108 35-67 (93)
134 COG0234 GroS Co-chaperonin Gro 62.8 8.2 0.00018 27.4 2.6 22 86-107 37-67 (96)
135 KOG1641 Mitochondrial chaperon 51.4 21 0.00044 25.6 3.1 28 81-108 40-76 (104)
136 cd06819 PLPDE_III_LS_D-TA Type 43.5 55 0.0012 28.3 5.3 21 96-116 314-334 (358)
137 cd06919 Asp_decarbox Aspartate 36.3 24 0.00052 25.7 1.6 31 79-109 58-88 (111)
138 PF02261 Asp_decarbox: Asparta 33.2 21 0.00045 26.2 0.9 31 79-109 59-89 (116)
139 PF10589 NADH_4Fe-4S: NADH-ubi 32.4 13 0.00027 22.5 -0.3 13 112-124 15-27 (46)
140 PF14031 D-ser_dehydrat: Putat 32.3 33 0.00071 24.0 1.7 31 84-115 53-83 (94)
141 TIGR00223 panD L-aspartate-alp 31.9 33 0.00072 25.5 1.8 32 79-110 59-90 (126)
142 PRK05449 aspartate alpha-decar 30.6 33 0.00071 25.6 1.6 32 79-110 59-90 (126)
143 PF10844 DUF2577: Protein of u 30.1 59 0.0013 23.0 2.8 13 97-109 75-87 (100)
144 cd06820 PLPDE_III_LS_D-TA_like 26.9 1.4E+02 0.0031 25.7 5.2 19 97-115 310-328 (353)
145 cd06821 PLPDE_III_D-TA Type II 22.8 1.3E+02 0.0028 26.0 4.1 19 97-115 314-332 (361)
146 cd07376 PLPDE_III_DSD_D-TA_lik 22.3 1.6E+02 0.0034 25.3 4.5 38 79-116 284-323 (345)
147 cd06813 PLPDE_III_DSD_D-TA_lik 21.8 95 0.0021 27.4 3.1 36 81-116 323-360 (388)
148 PRK04012 translation initiatio 20.7 3.2E+02 0.007 19.4 5.8 20 38-57 11-30 (100)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=2.8e-39 Score=276.11 Aligned_cols=160 Identities=35% Similarity=0.549 Sum_probs=149.7
Q ss_pred ceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493 20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV 99 (208)
Q Consensus 20 ~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~ 99 (208)
+++|||+++++++++++++|++.|+|+++||+|+|+|+|+|++|+|.++|.++. .++|.++|||++|+|+++|++|++|
T Consensus 1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~-~~~P~ipGHEivG~V~~vG~~V~~~ 79 (339)
T COG1064 1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPV-PKLPLIPGHEIVGTVVEVGEGVTGL 79 (339)
T ss_pred CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCC-CCCCccCCcceEEEEEEecCCCccC
Confidence 468999999999999999999999999999999999999999999999999988 5599999999999999999999999
Q ss_pred CCCCEEee-eccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493 100 REGDLVLP-VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (208)
Q Consensus 100 ~vGd~V~~-~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip 178 (208)
|+||||.+ ....+|++|++|++|++|+|+..+. .|...+| +|+||+++++..++++|
T Consensus 80 k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G-------------------Gyaeyv~v~~~~~~~iP 137 (339)
T COG1064 80 KVGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG-------------------GYAEYVVVPARYVVKIP 137 (339)
T ss_pred CCCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC-------------------cceeEEEEchHHeEECC
Confidence 99999988 7789999999999999999999765 5555666 99999999999999999
Q ss_pred CCCCccceeeccchhHHHhheeee
Q 028493 179 PDIPLDIACLLSCGVSTGNYRTLV 202 (208)
Q Consensus 179 ~~~~~~~aa~l~~~~~ta~~al~~ 202 (208)
+++++++||.+.|++.|+|.+|..
T Consensus 138 ~~~d~~~aApllCaGiT~y~alk~ 161 (339)
T COG1064 138 EGLDLAEAAPLLCAGITTYRALKK 161 (339)
T ss_pred CCCChhhhhhhhcCeeeEeeehhh
Confidence 999999999999999999999853
No 2
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-37 Score=259.00 Aligned_cols=187 Identities=53% Similarity=0.938 Sum_probs=174.2
Q ss_pred cccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCC
Q 028493 17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV 96 (208)
Q Consensus 17 ~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v 96 (208)
+..+++|||++.++++.||.++|+.+++|+.+||+||+.++++|++|.+.|+|..+. ..+|.++|||++|+|+.+|++|
T Consensus 2 ~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~-~~fP~IlGHEaaGIVESvGegV 80 (375)
T KOG0022|consen 2 AGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPE-GLFPVILGHEAAGIVESVGEGV 80 (375)
T ss_pred CCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCcc-ccCceEecccceeEEEEecCCc
Confidence 457899999999999999999999999999999999999999999999999998654 6899999999999999999999
Q ss_pred CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCC-CCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493 97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV 175 (208)
Q Consensus 97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~ 175 (208)
+++++||+|+..+...|++|.+|+++..|+|.+.+...+-+.. .+|++||+ ..|..++||.+..+|+||.+++...++
T Consensus 81 ~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~v~ 159 (375)
T KOG0022|consen 81 TTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDISVA 159 (375)
T ss_pred cccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-eCCCceEEecccccceeEEEeecceeE
Confidence 9999999999999999999999999999999999887544554 48999999 889999999999999999999999999
Q ss_pred EcCCCCCccceeeccchhHHHhheeeeeEE
Q 028493 176 KITPDIPLDIACLLSCGVSTGNYRTLVDVY 205 (208)
Q Consensus 176 ~ip~~~~~~~aa~l~~~~~ta~~al~~~~~ 205 (208)
+|++..|++++++++|++.|+|.|....+.
T Consensus 160 kId~~aPl~kvcLLgCGvsTG~GAa~~~Ak 189 (375)
T KOG0022|consen 160 KIDPSAPLEKVCLLGCGVSTGYGAAWNTAK 189 (375)
T ss_pred ecCCCCChhheeEeeccccccchhhhhhcc
Confidence 999999999999999999999999866554
No 3
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=1.8e-37 Score=261.65 Aligned_cols=180 Identities=43% Similarity=0.799 Sum_probs=171.2
Q ss_pred eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
.+||+++.++++||+++|+++++|+++||+||+.++|+|++|.++.+|..|. .+|.++|||++|+|++||++|+++|+
T Consensus 2 k~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~--~~P~vLGHEgAGiVe~VG~gVt~vkp 79 (366)
T COG1062 2 KTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPE--GFPAVLGHEGAGIVEAVGEGVTSVKP 79 (366)
T ss_pred CceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCceecccccccEEEEecCCccccCC
Confidence 5799999999999999999999999999999999999999999999999998 59999999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
||+|+..+...|++|++|++|+.|+|...+.....|...+|++|+. ..+...+++.+.++|+||.+++...+++++++.
T Consensus 80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~ 158 (366)
T COG1062 80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-GNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA 158 (366)
T ss_pred CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-cCCcceeeeeccccchhheeecccceEECCCCC
Confidence 9999999999999999999999999999888877888899999999 888889999999999999999999999999999
Q ss_pred CccceeeccchhHHHhheeeeeE
Q 028493 182 PLDIACLLSCGVSTGNYRTLVDV 204 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al~~~~ 204 (208)
+++.+++++|++.|++.+.+..+
T Consensus 159 p~~~a~llGCgV~TG~Gav~nta 181 (366)
T COG1062 159 PLEKACLLGCGVTTGIGAVVNTA 181 (366)
T ss_pred CccceEEEeeeeccChHHhhhcc
Confidence 99999999999999999876544
No 4
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.6e-35 Score=243.27 Aligned_cols=171 Identities=30% Similarity=0.434 Sum_probs=152.3
Q ss_pred cccccceeeeeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEe
Q 028493 15 STAGKIIRCRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESV 92 (208)
Q Consensus 15 ~~~~~~~~~ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~v 92 (208)
++...|.+.++|.+..+++ ++++.++++|+++++||+|+|+++|||++|+|.++|.++. .++|.++|||++|+|+++
T Consensus 2 ~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~Vvkv 80 (360)
T KOG0023|consen 2 SSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKV 80 (360)
T ss_pred CcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEE
Confidence 4455688899999999887 4677999999999999999999999999999999999988 899999999999999999
Q ss_pred CCCCCCCCCCCEEe-eeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec
Q 028493 93 GGGVEEVREGDLVL-PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV 171 (208)
Q Consensus 93 G~~v~~~~vGd~V~-~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~ 171 (208)
|++|++|++||+|- ......|.+|++|+.|.+++|++..+. +.|...+|+..++ +|++|+++++
T Consensus 81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t-~~g~~~DGt~~~g--------------gf~~~~~v~~ 145 (360)
T KOG0023|consen 81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFT-YNGVYHDGTITQG--------------GFQEYAVVDE 145 (360)
T ss_pred CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEe-ccccccCCCCccC--------------ccceeEEEee
Confidence 99999999999994 455678999999999999999976554 3555666744433 9999999999
Q ss_pred CcEEEcCCCCCccceeeccchhHHHhheee
Q 028493 172 THVVKITPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 172 ~~v~~ip~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
..+++||++++.+.||.+.|++.|.|.+|.
T Consensus 146 ~~a~kIP~~~pl~~aAPlLCaGITvYspLk 175 (360)
T KOG0023|consen 146 VFAIKIPENLPLASAAPLLCAGITVYSPLK 175 (360)
T ss_pred eeEEECCCCCChhhccchhhcceEEeehhH
Confidence 999999999999999999999999999984
No 5
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-33 Score=235.62 Aligned_cols=157 Identities=27% Similarity=0.448 Sum_probs=142.4
Q ss_pred eeeeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCC
Q 028493 21 IRCRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVE 97 (208)
Q Consensus 21 ~~~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~ 97 (208)
..|+|++|.++++ +++++++.|++ .|+||+|++.++|||+||+|+|.+.... ..+.|.++|||.+|+|.++|+.|+
T Consensus 3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 4579999999998 99999999987 8999999999999999999999877655 246899999999999999999999
Q ss_pred CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCcccccceEEEecCcEEE
Q 028493 98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK 176 (208)
Q Consensus 98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ 176 (208)
+||+||||++.+..+|+.|.+|++|+||+|+.+.+. +. +.+| ++++|.+.+++.+++
T Consensus 82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~---atpp~~G-------------------~la~y~~~~~dfc~K 139 (354)
T KOG0024|consen 82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFC---ATPPVDG-------------------TLAEYYVHPADFCYK 139 (354)
T ss_pred ccccCCeEEecCCCccccchhhhCcccccCCccccc---cCCCcCC-------------------ceEEEEEechHheee
Confidence 999999999999999999999999999999999974 22 3456 999999999999999
Q ss_pred cCCCCCccceeeccchhHHHhheee
Q 028493 177 ITPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 177 ip~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
+|+++++++.|++- .++++|+|..
T Consensus 140 LPd~vs~eeGAl~e-PLsV~~HAcr 163 (354)
T KOG0024|consen 140 LPDNVSFEEGALIE-PLSVGVHACR 163 (354)
T ss_pred CCCCCchhhccccc-chhhhhhhhh
Confidence 99999999998874 4889999873
No 6
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.97 E-value=2.7e-30 Score=225.64 Aligned_cols=177 Identities=43% Similarity=0.821 Sum_probs=145.7
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||+++...+..+++++++.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|++|
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~~~G 80 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSVKVG 80 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEECCCCccCCCC
Confidence 799999988877999999999999999999999999999999999887653 3578999999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~ 182 (208)
|+|+..+..+|++|++|+.|+.|+|.......+.|...+|..++. ..|..+.+..+.|+|+||+++|...++++|++++
T Consensus 81 drV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~ 159 (368)
T TIGR02818 81 DHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAP 159 (368)
T ss_pred CEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccc-cCCCcccccccCccceeeEEechhheEECCCCCC
Confidence 999998888999999999999999987543222333323322221 1122222222346999999999999999999999
Q ss_pred ccceeeccchhHHHhheee
Q 028493 183 LDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 183 ~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++++++.|||+++.
T Consensus 160 ~~~aa~l~~~~~ta~~a~~ 178 (368)
T TIGR02818 160 LEEVCLLGCGVTTGIGAVL 178 (368)
T ss_pred HHHhhhhcchhHHHHHHHH
Confidence 9999999999999999874
No 7
>PLN02740 Alcohol dehydrogenase-like
Probab=99.97 E-value=3.8e-30 Score=225.69 Aligned_cols=185 Identities=53% Similarity=0.954 Sum_probs=146.9
Q ss_pred cccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCC
Q 028493 17 AGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGV 96 (208)
Q Consensus 17 ~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v 96 (208)
..+|++|||++++++++++.+++++.|.|+++||+|||.+++||++|++.+.|.+.....+|.++|||++|+|+++|++|
T Consensus 5 ~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v 84 (381)
T PLN02740 5 QGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGV 84 (381)
T ss_pred cccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCC
Confidence 34678999999999887799999999999999999999999999999999998764334678999999999999999999
Q ss_pred CCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCC-CCCCCCcccccC-CCceeeeccCcccccceEEEecCcE
Q 028493 97 EEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS-MPRDGTNRFRDL-KGEVIHNVLNVSSFTEYTVVDVTHV 174 (208)
Q Consensus 97 ~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g-~~~~G~~~~~~~-~~~~~~~~~~~g~~~e~~~v~~~~v 174 (208)
++|++||+|++.+..+|+.|++|+.|.+|+|+........+ ...+|..+++.. .+....++...|+|+||++++...+
T Consensus 85 ~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~ 164 (381)
T PLN02740 85 EDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACV 164 (381)
T ss_pred CcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHe
Confidence 99999999999999999999999999999998865310000 000111111000 0001112223469999999999999
Q ss_pred EEcCCCCCccceeeccchhHHHhheee
Q 028493 175 VKITPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 175 ~~ip~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++|+++++++++++++++.|||+++.
T Consensus 165 ~~iP~~~~~~~aa~l~~~~~ta~~~~~ 191 (381)
T PLN02740 165 VKIDPNAPLKKMSLLSCGVSTGVGAAW 191 (381)
T ss_pred EECCCCCCHHHhhhhcccchhhHHHHH
Confidence 999999999999999999999998763
No 8
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.96 E-value=1.3e-29 Score=221.32 Aligned_cols=176 Identities=44% Similarity=0.757 Sum_probs=141.9
Q ss_pred eeeEEEecCCC--------CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCC
Q 028493 23 CRAAISRIPGK--------PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94 (208)
Q Consensus 23 ~ka~~~~~~~~--------~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~ 94 (208)
|||+++.+++. .+++++++.|+|+++||+|||.+++||++|++.+.|.++. .+|.++|||++|+|+++|+
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~ 78 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR--PLPMALGHEAAGVVVEVGE 78 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC--CCCccCCccceeEEEEeCC
Confidence 78999998653 3899999999999999999999999999999999987654 5789999999999999999
Q ss_pred CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcE
Q 028493 95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV 174 (208)
Q Consensus 95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v 174 (208)
+|+++++||+|+..+...|+.|..|+.|++|+|.........|....|..++. ..+..+.+..+.|+|+||+.++...+
T Consensus 79 ~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~-~~~~~~~~~~g~G~~aey~~v~~~~~ 157 (371)
T cd08281 79 GVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLR-LRGGEINHHLGVSAFAEYAVVSRRSV 157 (371)
T ss_pred CCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCccccc-ccCcccccccCcccceeeEEecccce
Confidence 99999999999988778899999999999999987654222222222211111 01111112223459999999999999
Q ss_pred EEcCCCCCccceeeccchhHHHhheee
Q 028493 175 VKITPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 175 ~~ip~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++|+++++++++++.++++|||+++.
T Consensus 158 ~~lP~~l~~~~aa~~~~~~~ta~~~~~ 184 (371)
T cd08281 158 VKIDKDVPLEIAALFGCAVLTGVGAVV 184 (371)
T ss_pred EECCCCCChHHhhhhcchHHHHHHHHH
Confidence 999999999999999999999998864
No 9
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.96 E-value=1.7e-29 Score=220.25 Aligned_cols=178 Identities=54% Similarity=0.953 Sum_probs=144.4
Q ss_pred eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
+|||+++.++++++++++++.|+|+++||+|||.+++||++|++.++|..+. ..+|.++|||++|+|+++|++|++|++
T Consensus 2 ~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~ 80 (369)
T cd08301 2 TCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGIVESVGEGVTDLKP 80 (369)
T ss_pred ccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCC-CCCCcccccccceEEEEeCCCCCcccc
Confidence 6899999988877999999999999999999999999999999999987653 467899999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCC-cccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGT-NRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~-~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
||+|+..+...|++|..|+.|++|.|.........|....+. .++. ..|....++...|+|+||++++...++++|++
T Consensus 81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~ 159 (369)
T cd08301 81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKINPE 159 (369)
T ss_pred CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccc-cCCcceeeeeccccceeEEEEecccEEECCCC
Confidence 999999888999999999999999998865321112111110 0000 11111222223458999999999999999999
Q ss_pred CCccceeeccchhHHHhheee
Q 028493 181 IPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++++++++.|+|+++.
T Consensus 160 ~~~~~aa~~~~~~~ta~~~~~ 180 (369)
T cd08301 160 APLDKVCLLSCGVSTGLGAAW 180 (369)
T ss_pred CCHHHhhhhcchhhHHHHHHH
Confidence 999999999999999998764
No 10
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.96 E-value=2e-29 Score=220.03 Aligned_cols=179 Identities=51% Similarity=0.920 Sum_probs=146.2
Q ss_pred eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
++|||+++...+.++++++++.|.|+++||+|||++++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~ 79 (368)
T cd08300 1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESVGEGVTSVK 79 (368)
T ss_pred CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEeCCCCccCC
Confidence 36899999888777999999999999999999999999999999999887654 36789999999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+..+...|+.|++|+.+++++|+......+.|...+|..++. ..|....+..+.|+|+||+.++...++++|++
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~ 158 (368)
T cd08300 80 PGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEISVAKINPE 158 (368)
T ss_pred CCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccc-cCCcccccccccccceeEEEEchhceEeCCCC
Confidence 99999998889999999999999999987653222232223322211 11221222223469999999999999999999
Q ss_pred CCccceeeccchhHHHhheee
Q 028493 181 IPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++++.+++.|||+++.
T Consensus 159 l~~~~aa~l~~~~~ta~~a~~ 179 (368)
T cd08300 159 APLDKVCLLGCGVTTGYGAVL 179 (368)
T ss_pred CChhhhhhhccchhhhHHHHH
Confidence 999999999989999999863
No 11
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.96 E-value=6.9e-29 Score=216.35 Aligned_cols=167 Identities=26% Similarity=0.413 Sum_probs=141.7
Q ss_pred ccccccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeC
Q 028493 14 SSTAGKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVG 93 (208)
Q Consensus 14 ~~~~~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG 93 (208)
+..+..|+.++++++++....+++.+++.|.|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG 82 (360)
T PLN02586 4 SPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKLG 82 (360)
T ss_pred ChhhhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEEC
Confidence 445567888888888887666999999999999999999999999999999999886543 3578999999999999999
Q ss_pred CCCCCCCCCCEEeeecc-CCCCCCccccCCCCCCCCCCccCC----CCCCCCCCCcccccCCCceeeeccCcccccceEE
Q 028493 94 GGVEEVREGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKD----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV 168 (208)
Q Consensus 94 ~~v~~~~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~ 168 (208)
++|++|++||+|+..+. ..|+.|++|+.|++|+|++..+.. ..|...+| +|+||++
T Consensus 83 ~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~ 143 (360)
T PLN02586 83 KNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYG-------------------GYSDMIV 143 (360)
T ss_pred CCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCC-------------------ccceEEE
Confidence 99999999999986543 579999999999999998754310 00222233 9999999
Q ss_pred EecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493 169 VDVTHVVKITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 169 v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
++...++++|+++++++++.+++++.|+|+++
T Consensus 144 v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al 175 (360)
T PLN02586 144 VDQHFVLRFPDNLPLDAGAPLLCAGITVYSPM 175 (360)
T ss_pred EchHHeeeCCCCCCHHHhhhhhcchHHHHHHH
Confidence 99999999999999999999999999999876
No 12
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.96 E-value=1.1e-28 Score=217.68 Aligned_cols=161 Identities=26% Similarity=0.374 Sum_probs=131.2
Q ss_pred eeeeEEEecCCCCeEEEEeecCCCC-------CCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCC
Q 028493 22 RCRAAISRIPGKPLVMEEIEVDPPK-------AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGG 94 (208)
Q Consensus 22 ~~ka~~~~~~~~~l~~~~~~~p~~~-------~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~ 94 (208)
-|||+++.++++ +++++++.|.|+ ++||||||.++|||++|++++.|.++. .+|.++|||++|+|+++|+
T Consensus 2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~ 78 (393)
T TIGR02819 2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA--PTGLVLGHEITGEVIEKGR 78 (393)
T ss_pred CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC--CCCccccceeEEEEEEEcC
Confidence 389999998886 999999999874 689999999999999999999886543 5689999999999999999
Q ss_pred CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCC---CCCCCCCCCcccccCCCceeeeccCcccccceEEEec
Q 028493 95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD---NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV 171 (208)
Q Consensus 95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~---~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~ 171 (208)
+|++|++||||+..+...|+.|.+|+.|++|+|....... .+|....| ...|+|+||+++|.
T Consensus 79 ~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~---------------~~~G~~aey~~v~~ 143 (393)
T TIGR02819 79 DVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG---------------GWVGGQSEYVMVPY 143 (393)
T ss_pred ccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC---------------CCCCceEEEEEech
Confidence 9999999999999999999999999999999998753210 01110000 00239999999996
Q ss_pred C--cEEEcCCCCCc----cceeeccchhHHHhhee
Q 028493 172 T--HVVKITPDIPL----DIACLLSCGVSTGNYRT 200 (208)
Q Consensus 172 ~--~v~~ip~~~~~----~~aa~l~~~~~ta~~al 200 (208)
. .++++|++++. .+++++.+.+.|+|+++
T Consensus 144 ~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~ 178 (393)
T TIGR02819 144 ADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA 178 (393)
T ss_pred hhCceEECCCcccccccccceeeeccHHHHHHHHH
Confidence 4 69999988653 34667777888999875
No 13
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.96 E-value=1.5e-28 Score=211.51 Aligned_cols=156 Identities=29% Similarity=0.507 Sum_probs=138.2
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||+++++++. +++++++.|.|+++||+|||.++++|++|++.+.+.+......|.++|||++|+|+++|++|++|++|
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (339)
T cd08239 1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG 79 (339)
T ss_pred CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence 79999998765 99999999999999999999999999999998877643222357899999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~ 182 (208)
|+|+..+...|+.|+.|+.|+.++|..... .+|...+| +|+||+.++...++++|++++
T Consensus 80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------------~~ae~~~v~~~~~~~~P~~~~ 138 (339)
T cd08239 80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------------GHAEYMLVPEKTLIPLPDDLS 138 (339)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------------cceeEEEechHHeEECCCCCC
Confidence 999999999999999999999999987653 23333344 999999999999999999999
Q ss_pred ccceeeccchhHHHhhee
Q 028493 183 LDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 183 ~~~aa~l~~~~~ta~~al 200 (208)
+++++++++++.|||+++
T Consensus 139 ~~~aa~l~~~~~ta~~~l 156 (339)
T cd08239 139 FADGALLLCGIGTAYHAL 156 (339)
T ss_pred HHHhhhhcchHHHHHHHH
Confidence 999999999999999986
No 14
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.96 E-value=2.6e-28 Score=212.75 Aligned_cols=176 Identities=51% Similarity=0.926 Sum_probs=144.3
Q ss_pred eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
.|||+++.+.++++++++++.|.++++||+|||.++++|++|++.+.|..+. .+|.++|||++|+|+++|++|+++++
T Consensus 2 ~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08277 2 KCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKAT--LFPVILGHEGAGIVESVGEGVTNLKP 79 (365)
T ss_pred ccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCCC--CCCeecccceeEEEEeeCCCCccCCC
Confidence 5799999987777999999999999999999999999999999999887653 67899999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
||+|+..+...|++|.+|+.|++++|+..... ..|...+|+.+++ ..|....++...|+|+||++++...++++|+++
T Consensus 80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l 157 (365)
T cd08277 80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA 157 (365)
T ss_pred CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCccccc-cCCcccccccccccceeeEEEchhheEECCCCC
Confidence 99999988899999999999999999886532 1222222211111 112112222234599999999999999999999
Q ss_pred CccceeeccchhHHHhheee
Q 028493 182 PLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al~ 201 (208)
++++++++++++.|||+++.
T Consensus 158 ~~~~aa~l~~~~~ta~~~~~ 177 (365)
T cd08277 158 PLEHVCLLGCGFSTGYGAAW 177 (365)
T ss_pred CHHHhhHhcchhHHHHHHHH
Confidence 99999999999999998763
No 15
>PLN02827 Alcohol dehydrogenase-like
Probab=99.95 E-value=9.9e-28 Score=210.38 Aligned_cols=176 Identities=49% Similarity=0.876 Sum_probs=138.2
Q ss_pred cceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493 19 KIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE 98 (208)
Q Consensus 19 ~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~ 98 (208)
....|||+++.++++.+++++++.|.|+++||+|||.+++||++|++.+.+.. .+|.++|||++|+|+++|++|++
T Consensus 9 ~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~vG~~v~~ 84 (378)
T PLN02827 9 NVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESIGEGVTE 84 (378)
T ss_pred ccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC----CCCeeecccceEEEEEcCCCCcc
Confidence 34569999999887669999999999999999999999999999999987742 35789999999999999999999
Q ss_pred CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCC-CCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493 99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPR-DGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (208)
Q Consensus 99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~-~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i 177 (208)
|++||+|+..+..+|++|.+|++|+++.|+...... .|... .+..+|. ..|..+.++...|+|+||+.++...++++
T Consensus 85 ~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~G~~aeyv~v~~~~~~~i 162 (378)
T PLN02827 85 FEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLER-KGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKV 162 (378)
T ss_pred cCCCCEEEEecCCCCCCChhhhCcCcccccCccccc-cccccCCCccccc-ccCcccccccccccceeeEEechhheEEC
Confidence 999999999888899999999999999998753210 00000 0000000 00111111112359999999999999999
Q ss_pred CCCCCccceeeccchhHHHhhee
Q 028493 178 TPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 178 p~~~~~~~aa~l~~~~~ta~~al 200 (208)
|+++++++++++.+++.|+|+++
T Consensus 163 P~~l~~~~aa~l~~~~~~a~~~~ 185 (378)
T PLN02827 163 DPLAPLHKICLLSCGVAAGLGAA 185 (378)
T ss_pred CCCCCHHHhhhhcchhHhhHHHH
Confidence 99999999988888888888765
No 16
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.95 E-value=5.1e-28 Score=210.31 Aligned_cols=168 Identities=36% Similarity=0.630 Sum_probs=139.2
Q ss_pred eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
+|||+++++++.++++++++.|+|+++||+|||.++++|++|++.++|..+. .+|.++|||++|+|+++|++|++|++
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~~ 78 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND--EFPFLLGHEAAGVVEAVGEGVTDVAP 78 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc--cCCcccccceEEEEEEeCCCCcccCC
Confidence 5899999999888999999999999999999999999999999999887543 57889999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
||+|+..+...|+.|..|+.|+.++|....... ... ..+| .........|+|+||+.++...++++|++
T Consensus 79 GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~-~~~~~~~g---------~~~~~~~~~G~~aey~~v~~~~~~~ip~~ 148 (358)
T TIGR03451 79 GDYVVLNWRAVCGQCRACKRGRPWYCFDTHNAT-QKMTLTDG---------TELSPALGIGAFAEKTLVHAGQCTKVDPA 148 (358)
T ss_pred CCEEEEccCCCCCCChHHhCcCcccCcCccccc-cccccccC---------cccccccccccccceEEEehhheEECCCC
Confidence 999999988999999999999999997532110 000 0001 00000011359999999999999999999
Q ss_pred CCccceeeccchhHHHhheee
Q 028493 181 IPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++++++++.|+|+++.
T Consensus 149 ~~~~~aa~l~~~~~ta~~~~~ 169 (358)
T TIGR03451 149 ADPAAAGLLGCGVMAGLGAAV 169 (358)
T ss_pred CChhHhhhhcccchhhHHHHH
Confidence 999999999888899997753
No 17
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.95 E-value=5.1e-27 Score=205.41 Aligned_cols=181 Identities=50% Similarity=0.858 Sum_probs=144.8
Q ss_pred ccceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493 18 GKIIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE 97 (208)
Q Consensus 18 ~~~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~ 97 (208)
.+..+||++++..++++++++++|.|++.++||+|||+++++|++|++.+.|.+.. .+|.++|||++|+|+++|++++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~ 80 (373)
T cd08299 3 GKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLVT--PFPVILGHEAAGIVESVGEGVT 80 (373)
T ss_pred cccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCCC--CCCccccccceEEEEEeCCCCc
Confidence 44567999999988777999999999999999999999999999999999887633 5688999999999999999999
Q ss_pred CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493 98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (208)
Q Consensus 98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i 177 (208)
.+++||+|+..+..+|++|.+|+.+++|.|+........|....++.+.+ ..|....++...|+|+||++++...++++
T Consensus 81 ~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~e~~~v~~~~~~~l 159 (373)
T cd08299 81 TVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKI 159 (373)
T ss_pred cCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCcccccccCCCcccceEEecccceeeC
Confidence 99999999998889999999999999999987543100111111111111 01111112222459999999999999999
Q ss_pred CCCCCccceeeccchhHHHhheee
Q 028493 178 TPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 178 p~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
|+++++++++++.+++.|||+++.
T Consensus 160 P~~l~~~~aa~~~~~~~ta~~~~~ 183 (373)
T cd08299 160 DAAAPLEKVCLIGCGFSTGYGAAV 183 (373)
T ss_pred CCCCChHHhheeccchHHHHHHHH
Confidence 999999999999999999998753
No 18
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.95 E-value=3.5e-27 Score=205.17 Aligned_cols=155 Identities=30% Similarity=0.432 Sum_probs=123.3
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCc-eeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPR-ILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~-~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
||+++++.+....++++.+.|.++++||+|||.++|||+||+|.+.|..+. .+.+. ++|||++|+|+++| .++.+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~-~~~~~~i~GHE~~G~V~evG-~~~~~~~ 78 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPF-VPPGDIILGHEFVGEVVEVG-VVRGFKV 78 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCC-CCCCCcccCccceEEEEEec-cccCCCC
Confidence 577777776653557777777779999999999999999999999998766 33344 99999999999999 7788999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccC--CCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEE-EcC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNK--DNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV-KIT 178 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~--~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~-~ip 178 (208)
||||++.+..+|+.|++|+.|.+|+|.+.++. ...+...+| +|+||+.+|.+..+ .+|
T Consensus 79 GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G-------------------~~aEyv~vp~~~~~~~~p 139 (350)
T COG1063 79 GDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDG-------------------GFAEYVRVPADFNLAKLP 139 (350)
T ss_pred CCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCC-------------------ceEEEEEeccccCeecCC
Confidence 99999999999999999999999999965431 011111334 99999999975554 558
Q ss_pred CCCCccceeeccchhHHHhhe
Q 028493 179 PDIPLDIACLLSCGVSTGNYR 199 (208)
Q Consensus 179 ~~~~~~~aa~l~~~~~ta~~a 199 (208)
+++ +.+++++...++++|++
T Consensus 140 d~~-~~~~aal~epla~~~~~ 159 (350)
T COG1063 140 DGI-DEEAAALTEPLATAYHG 159 (350)
T ss_pred CCC-ChhhhhhcChhhhhhhh
Confidence 888 56666666788888555
No 19
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.94 E-value=9.8e-27 Score=204.03 Aligned_cols=156 Identities=26% Similarity=0.378 Sum_probs=130.2
Q ss_pred eEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCE
Q 028493 25 AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDL 104 (208)
Q Consensus 25 a~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~ 104 (208)
+++.++..+.+++.+++.|.|+++||+|||.+++||++|++.+.|.+.. ..+|.++|||++|+|+++|++|++|++||+
T Consensus 9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdr 87 (375)
T PLN02178 9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKVGKNVTKFKEGDR 87 (375)
T ss_pred EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEECCCCCccCCCCE
Confidence 3444454445888899999999999999999999999999999887533 346889999999999999999999999999
Q ss_pred EeeeccC-CCCCCccccCCCCCCCCCCccCC----CCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493 105 VLPVFQG-DCGECRDCKSPKSNICSKFVNKD----NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (208)
Q Consensus 105 V~~~~~~-~c~~c~~~~~g~~~~c~~~~~~~----~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~ 179 (208)
|+..+.. .|+.|++|+.|++|+|+...... ..|...+| +|+||++++...++++|+
T Consensus 88 V~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~~~lP~ 148 (375)
T PLN02178 88 VGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQG-------------------GYSDVIVVDHRFVLSIPD 148 (375)
T ss_pred EEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCC-------------------ccccEEEEchHHeEECCC
Confidence 9865544 69999999999999999865310 01111223 999999999999999999
Q ss_pred CCCccceeeccchhHHHhhee
Q 028493 180 DIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~al 200 (208)
++++++++.+.+++.|+|+++
T Consensus 149 ~ls~~~aa~l~~~~~ta~~al 169 (375)
T PLN02178 149 GLPSDSGAPLLCAGITVYSPM 169 (375)
T ss_pred CCCHHHcchhhccchHHHHHH
Confidence 999999999999999999876
No 20
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.94 E-value=5.9e-27 Score=202.52 Aligned_cols=160 Identities=18% Similarity=0.299 Sum_probs=130.0
Q ss_pred ceeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhc-CCCCC-CCCCCceeccceeEEEEEeCCCCC
Q 028493 20 IIRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR-STQPP-MAVFPRILGHEAVGVVESVGGGVE 97 (208)
Q Consensus 20 ~~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~-g~~~~-~~~~p~~~G~e~~G~Vv~vG~~v~ 97 (208)
...+|++++++++. +++++++.| ++++||||||.+++||++|++.+. |.+.. ...+|.++|||++|+|+++ +|+
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~ 77 (343)
T PRK09880 2 QVKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS 77 (343)
T ss_pred cccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence 34579999998888 999999987 589999999999999999999875 43321 2357899999999999999 788
Q ss_pred CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493 98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (208)
Q Consensus 98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i 177 (208)
+|++||+|+..+..+|++|.+|+.|++++|+..+. +|.... +....|+|+||++++...++++
T Consensus 78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~--------------~~~~~G~~aey~~v~~~~~~~~ 140 (343)
T PRK09880 78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMY--------------FPHVDGGFTRYKVVDTAQCIPY 140 (343)
T ss_pred cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccc--------------cCCCCCceeeeEEechHHeEEC
Confidence 99999999999999999999999999999988653 221100 0001239999999999999999
Q ss_pred CCCCCccceeeccchhHHHhheee
Q 028493 178 TPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 178 p~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
|+++++++++ +...+++||+++.
T Consensus 141 P~~l~~~~aa-~~~~~~~a~~al~ 163 (343)
T PRK09880 141 PEKADEKVMA-FAEPLAVAIHAAH 163 (343)
T ss_pred CCCCCHHHHH-hhcHHHHHHHHHH
Confidence 9999987655 3456778998863
No 21
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.94 E-value=2.3e-26 Score=199.58 Aligned_cols=142 Identities=27% Similarity=0.468 Sum_probs=119.6
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCC--CCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM--AVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~--~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
|||++++..+.+++++++|.|+|+++||||||.+++||++|.+.++|.++.. ...|.++|||++|+|+++|++ ++|+
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 6899998654449999999999999999999999999999999999875431 235789999999999999999 9999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~ 179 (208)
+||+|+..+...|+.|.+|+.|++++|...... ..|. ..+| +|+||++++...++++|+
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~G-------------------~~aey~~~~~~~~~~~P~ 139 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLHG-------------------FMREYFVDDPEYLVKVPP 139 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCCc-------------------cceeEEEeccccEEECCC
Confidence 999999988889999999999999999865421 1121 1223 999999999999999999
Q ss_pred CCCccce
Q 028493 180 DIPLDIA 186 (208)
Q Consensus 180 ~~~~~~a 186 (208)
+++ +.+
T Consensus 140 ~~~-~~a 145 (355)
T cd08230 140 SLA-DVG 145 (355)
T ss_pred CCC-cce
Confidence 998 443
No 22
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.94 E-value=1.2e-26 Score=199.93 Aligned_cols=153 Identities=25% Similarity=0.389 Sum_probs=131.9
Q ss_pred EEEecCCC----CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 26 AISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 26 ~~~~~~~~----~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
+++..++. .++++++|.|.|+++||+|||+++++|++|++.+.|.++. ...|.++|||++|+|+++|++|++|++
T Consensus 2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~ 80 (329)
T TIGR02822 2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV-HRPRVTPGHEVVGEVAGRGADAGGFAV 80 (329)
T ss_pred eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC-CCCCccCCcceEEEEEEECCCCcccCC
Confidence 55555553 3899999999999999999999999999999999987653 234789999999999999999999999
Q ss_pred CCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 102 GDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 102 Gd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
||+|+..+. ..|+.|.+|+.|++++|+...+ .|...+| +|+||+.++...++++|++
T Consensus 81 Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~ 138 (329)
T TIGR02822 81 GDRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------------------GYAEYTTVPAAFAYRLPTG 138 (329)
T ss_pred CCEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------------------cceeEEEeccccEEECCCC
Confidence 999987654 5799999999999999988654 3333344 9999999999999999999
Q ss_pred CCccceeeccchhHHHhheee
Q 028493 181 IPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++.+++.+.|||+++.
T Consensus 139 ~~~~~aa~l~~~~~ta~~~~~ 159 (329)
T TIGR02822 139 YDDVELAPLLCAGIIGYRALL 159 (329)
T ss_pred CCHHHhHHHhccchHHHHHHH
Confidence 999999988899999999863
No 23
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.94 E-value=2.2e-26 Score=200.18 Aligned_cols=164 Identities=29% Similarity=0.403 Sum_probs=137.5
Q ss_pred eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
+.+++++++.+++.+++++++.|+|+++||+|||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~vG~~v~~~~ 86 (357)
T PLN02514 8 KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEVGSDVSKFT 86 (357)
T ss_pred ceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEECCCccccc
Confidence 45799999999988999999999999999999999999999999999886543 35688999999999999999999999
Q ss_pred CCCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493 101 EGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (208)
Q Consensus 101 vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~ 179 (208)
+||+|+..+. ..|++|.+|++|++++|....+.... ....| ....|+|+||++++...++++|+
T Consensus 87 ~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~-~~~~g--------------~~~~G~~aey~~v~~~~~~~iP~ 151 (357)
T PLN02514 87 VGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYND-VYTDG--------------KPTQGGFASAMVVDQKFVVKIPE 151 (357)
T ss_pred CCCEEEEcCccccCCCChhHhCCCcccCCCccccccc-cccCC--------------ccCCCccccEEEEchHHeEECCC
Confidence 9999986543 46999999999999999876431100 00011 00123999999999999999999
Q ss_pred CCCccceeeccchhHHHhhee
Q 028493 180 DIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~al 200 (208)
++++++++.+++++.|||+++
T Consensus 152 ~~~~~~aa~l~~~~~ta~~al 172 (357)
T PLN02514 152 GMAPEQAAPLLCAGVTVYSPL 172 (357)
T ss_pred CCCHHHhhhhhhhHHHHHHHH
Confidence 999999999999999999876
No 24
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.93 E-value=1.1e-25 Score=194.92 Aligned_cols=152 Identities=26% Similarity=0.458 Sum_probs=130.9
Q ss_pred EEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEE
Q 028493 26 AISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLV 105 (208)
Q Consensus 26 ~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V 105 (208)
++++++++++++++++.|.++++||+|||.++++|++|++.+.+.......+|.++|||++|+|+++|++++.+ +||+|
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV 80 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV 80 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence 45677776799999999999999999999999999999998754433224568999999999999999999887 99999
Q ss_pred eeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC------
Q 028493 106 LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP------ 179 (208)
Q Consensus 106 ~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~------ 179 (208)
+..+..+|++|..|+.|++|+|..... .|...+| +|+||+.++...++++|+
T Consensus 81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~ae~~~v~~~~~~~ip~~~~~~~ 138 (349)
T TIGR03201 81 IVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQG-------------------GFASHIVVPAKGLCVVDEARLAAA 138 (349)
T ss_pred EECCCCCCCCChhhhCcCcccCCCCCc---cCcCCCC-------------------cccceEEechHHeEECCccccccc
Confidence 999999999999999999999977543 2333344 999999999999999998
Q ss_pred CCCccceeeccchhHHHhhee
Q 028493 180 DIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~al 200 (208)
++++++++.+++.+.|+|+++
T Consensus 139 ~~~~~~~a~~~~~~~ta~~a~ 159 (349)
T TIGR03201 139 GLPLEHVSVVADAVTTPYQAA 159 (349)
T ss_pred CCCHHHhhhhcchHHHHHHHH
Confidence 889888888888999999876
No 25
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.93 E-value=3.6e-25 Score=192.98 Aligned_cols=176 Identities=48% Similarity=0.908 Sum_probs=146.9
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
+||+++.+.+.++++++.+.|.++++||+||+.++++|++|++.+.+..+. ..|.++|||++|+|+++|++++++++|
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~--~~~~i~g~e~~G~V~~vG~~v~~~~~G 78 (365)
T cd05279 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPT--PLPVILGHEGAGIVESIGPGVTTLKPG 78 (365)
T ss_pred CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCCCC
Confidence 578999988877999999999999999999999999999999998887643 567899999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~ 182 (208)
|+|++.+...|++|.+|+.++++.|.........|...+|+.+|+ ..|...+++.+.|+|++|+.++...++++|++++
T Consensus 79 d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~ 157 (365)
T cd05279 79 DKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFT-CKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAP 157 (365)
T ss_pred CEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceee-ccCCccccccccccccceEEecCCceEECCCCCC
Confidence 999998888999999999999999988664322233334444443 1222333444456999999999999999999999
Q ss_pred ccceeeccchhHHHhheee
Q 028493 183 LDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 183 ~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++.+++.+||+++.
T Consensus 158 ~~~a~~~~~~~~ta~~al~ 176 (365)
T cd05279 158 LEKVCLIGCGFSTGYGAAV 176 (365)
T ss_pred HHHhhHhccchhHHHHHHH
Confidence 9999999889999998764
No 26
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.93 E-value=1.5e-25 Score=163.85 Aligned_cols=109 Identities=39% Similarity=0.703 Sum_probs=95.5
Q ss_pred CCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCC
Q 028493 47 AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNI 126 (208)
Q Consensus 47 ~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~ 126 (208)
|+||||||++++||++|++.++|.......+|.++|||++|+|+++|++|++|++||+|++.+...|+.|++|+.+++++
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 68999999999999999999999543346889999999999999999999999999999999988899999999999999
Q ss_pred CCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493 127 CSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (208)
Q Consensus 127 c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i 177 (208)
|..... +|...+| +|+||+++|.++++++
T Consensus 81 c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 81 CPNPEV---LGLGLDG-------------------GFAEYVVVPARNLVPV 109 (109)
T ss_dssp TTTBEE---TTTSSTC-------------------SSBSEEEEEGGGEEEE
T ss_pred CCCCCE---eEcCCCC-------------------cccCeEEEehHHEEEC
Confidence 988775 5555666 9999999999999875
No 27
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.92 E-value=5.3e-25 Score=190.28 Aligned_cols=151 Identities=26% Similarity=0.463 Sum_probs=126.6
Q ss_pred eeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
|||+++++++. +++++++.|.| +++||+|||.++++|++|.+.+.+... ..+|.++|||++|+|+++|++|++|++
T Consensus 1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~~v 77 (347)
T PRK10309 1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAVGSGVDDLHP 77 (347)
T ss_pred CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEeCCCCCCCCC
Confidence 68999998876 99999999997 589999999999999999875432111 135789999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
||+|+..+...|+.|++|+.|.+++|..... .|...+| +|+||+.++...++++|+++
T Consensus 78 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~ 135 (347)
T PRK10309 78 GDAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRDG-------------------GNAEYIVVKRKNLFALPTDM 135 (347)
T ss_pred CCEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCCC-------------------ccceeEEeehHHeEECcCCC
Confidence 9999999888999999999999999976543 3333344 99999999999999999999
Q ss_pred CccceeeccchhHHHhhe
Q 028493 182 PLDIACLLSCGVSTGNYR 199 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~a 199 (208)
++++++++. ...++|++
T Consensus 136 s~~~aa~~~-~~~~~~~~ 152 (347)
T PRK10309 136 PIEDGAFIE-PITVGLHA 152 (347)
T ss_pred CHHHhhhhh-HHHHHHHH
Confidence 999888763 34456665
No 28
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.92 E-value=6.9e-25 Score=189.74 Aligned_cols=148 Identities=21% Similarity=0.234 Sum_probs=120.3
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC---CCCCCceeccceeEEEEEeCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP---MAVFPRILGHEAVGVVESVGGGVEEV 99 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~---~~~~p~~~G~e~~G~Vv~vG~~v~~~ 99 (208)
-|+++++++++ ++++|++.|+ +++||+|||+++|||++|++.++|.+.. ...+|.++|||++|+|+++|.+ .|
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--~~ 78 (341)
T cd08237 3 NQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--TY 78 (341)
T ss_pred ccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--cc
Confidence 37899999886 9999999995 9999999999999999999999987532 1257999999999999998764 79
Q ss_pred CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (208)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~ 179 (208)
++||||+..+...|+ |..| +..|+|....+ .|...+| +|+||+++|.+.++++|+
T Consensus 79 ~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~vP~ 133 (341)
T cd08237 79 KVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSGYDG-------------------FMQDYVFLPPDRLVKLPD 133 (341)
T ss_pred CCCCEEEECCCCCch-hccc--chhccCCCcce---eEecCCC-------------------ceEEEEEEchHHeEECCC
Confidence 999999988777777 3344 46688876543 2222234 999999999999999999
Q ss_pred CCCccceeeccchhHHHhhee
Q 028493 180 DIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~al 200 (208)
++++++|+++ ..++++|+++
T Consensus 134 ~l~~~~aa~~-~~~~~a~~a~ 153 (341)
T cd08237 134 NVDPEVAAFT-ELVSVGVHAI 153 (341)
T ss_pred CCChHHhhhh-chHHHHHHHH
Confidence 9999887754 4677888776
No 29
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.92 E-value=1.4e-24 Score=188.45 Aligned_cols=161 Identities=27% Similarity=0.452 Sum_probs=137.0
Q ss_pred eeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC-----
Q 028493 24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE----- 98 (208)
Q Consensus 24 ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~----- 98 (208)
|++++.++++.+++++++.|.|+++||+|||.++++|++|.+...|.++. ..+|.++|||++|+|+++|++|+.
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~~~ 80 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVALGGGVTTDVAGE 80 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEeCCCccccccCC
Confidence 78999998866999999999999999999999999999999999887652 367889999999999999999986
Q ss_pred -CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCC-CCcccccCCCceeeeccCcccccceEEEecC-cEE
Q 028493 99 -VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRD-GTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT-HVV 175 (208)
Q Consensus 99 -~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~-G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~-~v~ 175 (208)
|++||+|+.....+|++|..|+.+.+|.|.+... +|.... | . ....|+|+||++++.. .++
T Consensus 81 ~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~~--------~-----~~~~g~~a~~~~v~~~~~~~ 144 (361)
T cd08231 81 PLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASCD--------D-----PHLSGGYAEHIYLPPGTAIV 144 (361)
T ss_pred ccCCCCEEEEcccCCCCCChhHhCcCccccccchh---cccccccc--------C-----CCCCcccceEEEecCCCceE
Confidence 9999999999989999999999999999987653 221110 0 0 0012399999999986 799
Q ss_pred EcCCCCCccceeeccchhHHHhheee
Q 028493 176 KITPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 176 ~ip~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
++|++++.+++++++++++|||+++.
T Consensus 145 ~lP~~~~~~~aa~~~~~~~ta~~al~ 170 (361)
T cd08231 145 RVPDNVPDEVAAPANCALATVLAALD 170 (361)
T ss_pred ECCCCCCHHHHHHhcCHHHHHHHHHH
Confidence 99999998888888899999999873
No 30
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.92 E-value=2.6e-24 Score=186.10 Aligned_cols=154 Identities=32% Similarity=0.468 Sum_probs=131.2
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC-C---------CCCCCceeccceeEEEEEe
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP-P---------MAVFPRILGHEAVGVVESV 92 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~-~---------~~~~p~~~G~e~~G~Vv~v 92 (208)
|||+++++++. +++++++.|+|+++||+||+.++++|++|++.+.+... . ....|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v 79 (351)
T cd08233 1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV 79 (351)
T ss_pred CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence 78999998776 99999999999999999999999999999987654311 1 0136889999999999999
Q ss_pred CCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCC-CCCCcccccCCCceeeeccCcccccceEEEec
Q 028493 93 GGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV 171 (208)
Q Consensus 93 G~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~ 171 (208)
|++|++|++||+|+......|++|.+|++|..++|..... .|.. .+| +|++|+.++.
T Consensus 80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~a~~~~~~~ 137 (351)
T cd08233 80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGGG-------------------GFAEYVVVPA 137 (351)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCCC-------------------ceeeEEEech
Confidence 9999999999999998888999999999999999987643 2211 134 9999999999
Q ss_pred CcEEEcCCCCCccceeeccchhHHHhhee
Q 028493 172 THVVKITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 172 ~~v~~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
..++++|+++++++++++ ....|||+++
T Consensus 138 ~~~~~lP~~~~~~~aa~~-~~~~ta~~~l 165 (351)
T cd08233 138 YHVHKLPDNVPLEEAALV-EPLAVAWHAV 165 (351)
T ss_pred HHeEECcCCCCHHHhhhc-cHHHHHHHHH
Confidence 999999999999888765 5678999886
No 31
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.92 E-value=2.9e-24 Score=187.30 Aligned_cols=179 Identities=36% Similarity=0.699 Sum_probs=140.4
Q ss_pred eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
++|||+++++++.++++++.+.|+++++||+|||.++++|++|++.+.|.++. ..|.++|||++|+|+++|+++.+++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~~~~ 78 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPT--PLPAVLGHEGAGVVEAVGSAVTGLK 78 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccCC
Confidence 46899999987767999999999999999999999999999999999887653 5678999999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCcee-eeccCcccccceEEEecCcEEEcCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVI-HNVLNVSSFTEYTVVDVTHVVKITP 179 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~-~~~~~~g~~~e~~~v~~~~v~~ip~ 179 (208)
+||+|++.. ..|+.|.+|+.++.+.|.+.......|...+|-.-+....++.. .++...|+|++|++++...++++|+
T Consensus 79 ~Gd~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~ 157 (365)
T cd08278 79 PGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDK 157 (365)
T ss_pred CCCEEEEcc-cCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCC
Confidence 999999866 47999999999999999875432112222222000000000000 0011235999999999999999999
Q ss_pred CCCccceeeccchhHHHhheeee
Q 028493 180 DIPLDIACLLSCGVSTGNYRTLV 202 (208)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~al~~ 202 (208)
++++++++.+++++.|||.++..
T Consensus 158 ~~s~~~a~~l~~~~~ta~~~~~~ 180 (365)
T cd08278 158 DVPLELLAPLGCGIQTGAGAVLN 180 (365)
T ss_pred CCCHHHhhhhcchhhhhhHHHhh
Confidence 99999999999999999988643
No 32
>PRK10083 putative oxidoreductase; Provisional
Probab=99.91 E-value=4.1e-24 Score=183.64 Aligned_cols=152 Identities=33% Similarity=0.599 Sum_probs=131.2
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||+++++++. +++++++.|+|+++||+||+.++++|++|++++.|.++. .++|.++|||++|+|+++|++|+.+++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G 78 (339)
T PRK10083 1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF-AKYPRVIGHEFFGVIDAVGEGVDAARIG 78 (339)
T ss_pred CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc-CCCCcccccceEEEEEEECCCCccCCCC
Confidence 68999998886 999999999999999999999999999999999887654 3568999999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~ 182 (208)
|+|+..+...|+.|.+|..+++++|....+ .+...+| +|+||+.++...++++|++++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~ip~~~~ 136 (339)
T PRK10083 79 ERVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHRDG-------------------GFSEYAVVPAKNAHRIPDAIA 136 (339)
T ss_pred CEEEEccccCCCCCccccCcCcccCCCCce---EEEccCC-------------------cceeeEEechHHeEECcCCCC
Confidence 999999888999999999999999976553 2222234 999999999999999999999
Q ss_pred ccceeeccchhHHHhhe
Q 028493 183 LDIACLLSCGVSTGNYR 199 (208)
Q Consensus 183 ~~~aa~l~~~~~ta~~a 199 (208)
+++++ +...+.++|++
T Consensus 137 ~~~a~-~~~~~~~a~~~ 152 (339)
T PRK10083 137 DQYAV-MVEPFTIAANV 152 (339)
T ss_pred HHHHh-hhchHHHHHHH
Confidence 88766 44566677753
No 33
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.91 E-value=5.5e-24 Score=182.95 Aligned_cols=155 Identities=32% Similarity=0.532 Sum_probs=135.7
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||+++++++.++++++++.|+++++||+||+.++++|++|++.+.|..+. ...|.++|||++|+|+++|++++++++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~vG~~v~~~~~G 79 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAVGEGVSRWKVG 79 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEECCCCccCCCC
Confidence 799999998666999999999999999999999999999999998886543 3567899999999999999999999999
Q ss_pred CEEeeec-cCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 103 DLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 103 d~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
|+|++.+ ...|+.|.+|+.|+.+.|..... .|...+| ++++|+.++...++++|+++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~g-------------------~~a~~~~v~~~~~~~lp~~~ 137 (333)
T cd08296 80 DRVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRDG-------------------GYAEYMLAPAEALARIPDDL 137 (333)
T ss_pred CEEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccCC-------------------cceeEEEEchhheEeCCCCC
Confidence 9998754 46899999999999999987653 2222234 99999999999999999999
Q ss_pred CccceeeccchhHHHhhee
Q 028493 182 PLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al 200 (208)
++++++.+++++.|+|+++
T Consensus 138 ~~~~aa~l~~~~~ta~~~~ 156 (333)
T cd08296 138 DAAEAAPLLCAGVTTFNAL 156 (333)
T ss_pred CHHHhhhhhhhhHHHHHHH
Confidence 9999998999999999876
No 34
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.91 E-value=1.3e-24 Score=187.45 Aligned_cols=134 Identities=30% Similarity=0.441 Sum_probs=119.2
Q ss_pred eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
||++++.+.+.+ |+++|++.|.|++|||||||++++||+.|....+|......++|.++|.|++|+|+++|++|++|+
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 689999987765 889999999999999999999999999999999997444356899999999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+... . .+ .+| +|+||..+|.+.++++|++
T Consensus 81 ~GdrV~~~~-~------------------------~~--~~G-------------------~~AEy~~v~a~~~~~~P~~ 114 (326)
T COG0604 81 VGDRVAALG-G------------------------VG--RDG-------------------GYAEYVVVPADWLVPLPDG 114 (326)
T ss_pred CCCEEEEcc-C------------------------CC--CCC-------------------cceeEEEecHHHceeCCCC
Confidence 999998642 0 00 224 9999999999999999999
Q ss_pred CCccceeeccchhHHHhheeee
Q 028493 181 IPLDIACLLSCGVSTGNYRTLV 202 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al~~ 202 (208)
+++++||++++++.|||++|..
T Consensus 115 ls~~eAAal~~~~~TA~~~l~~ 136 (326)
T COG0604 115 LSFEEAAALPLAGLTAWLALFD 136 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999865
No 35
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.91 E-value=5.8e-24 Score=183.93 Aligned_cols=157 Identities=24% Similarity=0.229 Sum_probs=134.7
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||+++.+++. +++++.+.|.++++||+|||.++++|++|++.+.+.+.. ...|.++|||++|+|+++|++++++++|
T Consensus 1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~vG~~v~~~~~G 78 (351)
T cd08285 1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEVGSEVKDFKPG 78 (351)
T ss_pred CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEecCCcCccCCC
Confidence 79999999886 899999999899999999999999999999988876543 3568899999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITPD 180 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~~ 180 (208)
|+|+..+..+|++|..|..|+++.|.......+.+...+| +|+||++++.. .++++|++
T Consensus 79 d~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g-------------------~~~~y~~v~~~~~~~~~lP~~ 139 (351)
T cd08285 79 DRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDG-------------------VFAEYFHVNDADANLAPLPDG 139 (351)
T ss_pred CEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCc-------------------ceeEEEEcchhhCceEECCCC
Confidence 9999987789999999999999999875321111112233 99999999974 89999999
Q ss_pred CCccceeeccchhHHHhhee
Q 028493 181 IPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al 200 (208)
++++++++++..+.|||+++
T Consensus 140 ~~~~~aa~~~~~~~ta~~~~ 159 (351)
T cd08285 140 LTDEQAVMLPDMMSTGFHGA 159 (351)
T ss_pred CCHHHhhhhccchhhHHHHH
Confidence 99999998888889999874
No 36
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.91 E-value=8.8e-24 Score=185.68 Aligned_cols=173 Identities=26% Similarity=0.326 Sum_probs=137.9
Q ss_pred eeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
|||+++++++. +++++++.|.| +++||+||+.++++|++|++.+.|.++. .++|.++|||++|+|+++|++++++++
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~ 78 (386)
T cd08283 1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEVGPEVRNLKV 78 (386)
T ss_pred CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEeCCCCCCCCC
Confidence 78999998765 99999999988 4999999999999999999999998765 456889999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCC-CCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKD-NQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKIT 178 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~-~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip 178 (208)
||+|+..+...|++|++|+.++.+.|.+..... +.+ .+|....+ ..|.........|+|++|++++.. .++++|
T Consensus 79 Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp 155 (386)
T cd08283 79 GDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAK--LYGHAGAG-IFGYSHLTGGYAGGQAEYVRVPFADVGPFKIP 155 (386)
T ss_pred CCEEEEcCcCCCCCChhhcCCCcccCCCccccccccc--cccccccc-ccccccccCCCCCeeEEEEEcccccCeEEECC
Confidence 999999988899999999999999998764320 000 01100000 000000000113599999999987 899999
Q ss_pred CCCCccceeeccchhHHHhhee
Q 028493 179 PDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 179 ~~~~~~~aa~l~~~~~ta~~al 200 (208)
++++++++++++...+|||+++
T Consensus 156 ~~~~~~~aa~l~~~~~ta~~~l 177 (386)
T cd08283 156 DDLSDEKALFLSDILPTGYHAA 177 (386)
T ss_pred CCCCHHHHhhhccchhhhHHHH
Confidence 9999999999999999999987
No 37
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.91 E-value=6.7e-24 Score=182.20 Aligned_cols=157 Identities=31% Similarity=0.464 Sum_probs=140.6
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
||++++++++.++++++.+.|.++++||+||+.++++|++|++.+.|.+.. ...+|.++|||++|+|+++|+++.+|+
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 689999988667999999999999999999999999999999988887642 345688999999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+......|+.|..|..|+.++|+..++ .|...+| +|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~P~~ 138 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-------------------GFAEYLLVPSRRLVKLPRG 138 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-------------------cceeeEEecHHHeEECCCC
Confidence 99999998888999999999999999998875 3333445 9999999999999999999
Q ss_pred CCccceeeccchhHHHhheee
Q 028493 181 IPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++.+++++.|||+++.
T Consensus 139 ls~~~aa~l~~~~~ta~~~l~ 159 (340)
T cd05284 139 LDPVEAAPLADAGLTAYHAVK 159 (340)
T ss_pred CCHHHhhhhcchHHHHHHHHH
Confidence 999999999999999999874
No 38
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.91 E-value=2.1e-23 Score=181.56 Aligned_cols=174 Identities=44% Similarity=0.725 Sum_probs=139.4
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||+++.+++.++++++++.|+++++||+|||.++++|+.|.+.+.|.++. .+|.++|+|++|+|+++|+++..+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA--PLPAVLGHEGAGVVEEVGPGVTGVKPG 78 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCC--CCCccccccceEEEEEeCCCccccCCC
Confidence 699999998777999999999999999999999999999999988887654 567899999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCC-CCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
|+|+..+..+|++|++|.+++.+.|...... ++.. .+|..++. .-|.........|+|++|+.++.+.++++|+++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~ 155 (363)
T cd08279 79 DHVVLSWIPACGTCRYCSRGQPNLCDLGAGI--LGGQLPDGTRRFT-ADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDI 155 (363)
T ss_pred CEEEECCCCCCCCChhhcCCCcccCcccccc--cccccCCCccccc-ccCccccccccCccceeeEEeccccEEECCCCC
Confidence 9999999999999999999999999764210 0100 00000000 001011111223599999999999999999999
Q ss_pred CccceeeccchhHHHhheee
Q 028493 182 PLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al~ 201 (208)
++++++++++++.|||.++.
T Consensus 156 ~~~~aa~~~~~~~ta~~~~~ 175 (363)
T cd08279 156 PLDRAALLGCGVTTGVGAVV 175 (363)
T ss_pred ChHHeehhcchhHHHHHHHH
Confidence 99999999999999998864
No 39
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.91 E-value=1.9e-23 Score=178.95 Aligned_cols=155 Identities=30% Similarity=0.462 Sum_probs=138.8
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||++++++++++++++.+.|.++++||+||+.++++|++|++...|..+. .++|.++|||++|+|+++|++++.+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~~~G 79 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEVGENVKGFKPG 79 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEeCCCCccCCCC
Confidence 689999999888999999999999999999999999999999988886543 3567899999999999999999899999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~ 182 (208)
|+|++.....|+.|.+|..++++.|+.... +|....| +|++|+.++...++++|++++
T Consensus 80 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~ 137 (334)
T PRK13771 80 DRVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELDG-------------------FFAEYAKVKVTSLVKVPPNVS 137 (334)
T ss_pred CEEEECCCCCCcCChhhcCCCcccCccccc---cccccCc-------------------eeeeeeecchhceEECCCCCC
Confidence 999998888999999999999999988653 3333345 999999999999999999999
Q ss_pred ccceeeccchhHHHhhee
Q 028493 183 LDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 183 ~~~aa~l~~~~~ta~~al 200 (208)
+++++.+.++..++|+++
T Consensus 138 ~~~~a~l~~~~~~a~~~~ 155 (334)
T PRK13771 138 DEGAVIVPCVTGMVYRGL 155 (334)
T ss_pred HHHhhcccchHHHHHHHH
Confidence 999999999999999876
No 40
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.90 E-value=2e-23 Score=179.51 Aligned_cols=157 Identities=30% Similarity=0.401 Sum_probs=136.8
Q ss_pred eeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
||++++.+++. +++.+.+.|.| +++||+|||.++++|++|.+.+.|.++. .++|.++|||++|+|+++|++++++++
T Consensus 1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~ 78 (347)
T cd05278 1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEVGSDVKRLKP 78 (347)
T ss_pred CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEECCCccccCC
Confidence 68999998876 99999999999 8999999999999999999998887764 466899999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP 179 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~ 179 (208)
||+|+..+...|+.|.+|+.|...+|+........+....| +|++|++++.. .++++|+
T Consensus 79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~ 139 (347)
T cd05278 79 GDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDG-------------------GQAEYVRVPYADMNLAKIPD 139 (347)
T ss_pred CCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCC-------------------eeeEEEEecchhCeEEECCC
Confidence 99999999999999999999999999775432111111223 99999999987 8999999
Q ss_pred CCCccceeeccchhHHHhhee
Q 028493 180 DIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~al 200 (208)
++++++++.+++.+.|||+++
T Consensus 140 ~~~~~~aa~l~~~~~ta~~~~ 160 (347)
T cd05278 140 GLPDEDALMLSDILPTGFHGA 160 (347)
T ss_pred CCCHHHHhhhcchhhheeehh
Confidence 999999999999999999886
No 41
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.90 E-value=4e-23 Score=176.00 Aligned_cols=156 Identities=37% Similarity=0.639 Sum_probs=137.6
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||+++..++.++.+++.+.|.+.++||+||+.++++|++|.+.+.|..+. ...|.++|||++|+|+.+|++++.+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~G 79 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEVGEGVERFKPG 79 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEECCCCccCCCC
Confidence 689999875556999999999999999999999999999999998886654 4567899999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~ 182 (208)
|+|++.....|+.|.+|+.++.++|.... ..|....| +|++|+.++...++++|++++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~ 137 (332)
T cd08259 80 DRVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEEVDG-------------------GFAEYVKVPERSLVKLPDNVS 137 (332)
T ss_pred CEEEECCCCCCcCChhhhCCCcccCCCcc---ccccccCC-------------------eeeeEEEechhheEECCCCCC
Confidence 99999988899999999999999998752 23333344 999999999999999999999
Q ss_pred ccceeeccchhHHHhheee
Q 028493 183 LDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 183 ~~~aa~l~~~~~ta~~al~ 201 (208)
+++++.+++++.|||+++.
T Consensus 138 ~~~~~~~~~~~~ta~~~l~ 156 (332)
T cd08259 138 DESAALAACVVGTAVHALK 156 (332)
T ss_pred HHHHhhhccHHHHHHHHHH
Confidence 9999999999999998864
No 42
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.90 E-value=3.3e-23 Score=176.83 Aligned_cols=155 Identities=26% Similarity=0.365 Sum_probs=133.3
Q ss_pred eeeEEEecCC-CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~-~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
||++++.+++ ..+++++.+.|+++++||+||+.++++|++|++.+.+... ..+|.++|||++|+|+.+|++++.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~~ 78 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKV--KPMPHIPGAEFAGVVEEVGDHVKGVKK 78 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCCC--CCCCeecccceeEEEEEECCCCCCCCC
Confidence 6889997765 3488888888889999999999999999999988764221 245778999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
||+|+......|++|.+|..|+++.|....+ +|....| +|++|+.++...++++|+++
T Consensus 79 Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~ 136 (325)
T cd08264 79 GDRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSNG-------------------GYAEYIVVPEKNLFKIPDSI 136 (325)
T ss_pred CCEEEECCCcCCCCChhhcCCCccccCccce---eeccCCC-------------------ceeeEEEcCHHHceeCCCCC
Confidence 9999998888999999999999999987553 3332334 89999999999999999999
Q ss_pred CccceeeccchhHHHhheee
Q 028493 182 PLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al~ 201 (208)
++++++.+++++.|||+++.
T Consensus 137 ~~~~~~~~~~~~~~a~~~l~ 156 (325)
T cd08264 137 SDELAASLPVAALTAYHALK 156 (325)
T ss_pred CHHHhhhhhhhhHHHHHHHH
Confidence 99999999999999998863
No 43
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.90 E-value=7.1e-23 Score=175.69 Aligned_cols=154 Identities=27% Similarity=0.454 Sum_probs=134.5
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||+++++++...++++++.|+++++||+|||.++++|++|++.+.|..+. ..|.++|||++|+|+.+|++++.|++|
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~~G 78 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEVGPGVTSLKVG 78 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEECCCCccCCCC
Confidence 799999988874448999999999999999999999999999988886543 346789999999999999999999999
Q ss_pred CEEeeec-cCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 103 DLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 103 d~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
|+|++.+ ...|+.|.+|..+..+.|..... .|...+| +|+||+.++...++++|+++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~ 136 (338)
T PRK09422 79 DRVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------------GMAEQCIVTADYAVKVPEGL 136 (338)
T ss_pred CEEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------------cceeEEEEchHHeEeCCCCC
Confidence 9998755 46899999999999999987653 2333344 99999999999999999999
Q ss_pred CccceeeccchhHHHhhee
Q 028493 182 PLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al 200 (208)
++++++.++..+.|||+++
T Consensus 137 ~~~~aa~l~~~~~ta~~~~ 155 (338)
T PRK09422 137 DPAQASSITCAGVTTYKAI 155 (338)
T ss_pred CHHHeehhhcchhHHHHHH
Confidence 9999999999999999886
No 44
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.89 E-value=6.7e-23 Score=177.22 Aligned_cols=154 Identities=28% Similarity=0.427 Sum_probs=131.9
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--------CCCCCceeccceeEEEEEeCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--------MAVFPRILGHEAVGVVESVGG 94 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--------~~~~p~~~G~e~~G~Vv~vG~ 94 (208)
|||+++++++. +++++.+.|+++++||+||+.++++|++|++.+.|.... ..+.|.++|||++|+|+++|+
T Consensus 1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~ 79 (350)
T cd08256 1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79 (350)
T ss_pred CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence 68999998876 999999999999999999999999999999988875311 014577899999999999999
Q ss_pred CCC--CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC--CCCCCcccccCCCceeeeccCcccccceEEEe
Q 028493 95 GVE--EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM--PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD 170 (208)
Q Consensus 95 ~v~--~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~--~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~ 170 (208)
+|+ +|++||+|+..+...|+.|+.|+.|..+.|+.... +|. ...| +|++|+.++
T Consensus 80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~g-------------------~~~~~~~~~ 137 (350)
T cd08256 80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQNNVNG-------------------GMAEYMRFP 137 (350)
T ss_pred CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeeccCCCC-------------------cceeeEEcc
Confidence 999 89999999999999999999999999999976431 222 1233 999999999
Q ss_pred cC-cEEEcCCCCCccceeeccchhHHHhhee
Q 028493 171 VT-HVVKITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 171 ~~-~v~~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
.+ .++++|+++++++++++ ..++|+|+++
T Consensus 138 ~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~ 167 (350)
T cd08256 138 KEAIVHKVPDDIPPEDAILI-EPLACALHAV 167 (350)
T ss_pred cccceEECCCCCCHHHHhhh-hHHHHHHHHH
Confidence 87 57899999999988877 7888999875
No 45
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.89 E-value=8.7e-23 Score=176.39 Aligned_cols=157 Identities=32% Similarity=0.504 Sum_probs=136.8
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC-----------CCCCCceeccceeEEEEE
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-----------MAVFPRILGHEAVGVVES 91 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~-----------~~~~p~~~G~e~~G~Vv~ 91 (208)
|||+++..++.++++++++.|+++++||+||+.++++|++|++.+.|.++. ...+|.++|||++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 799999988877999999999999999999999999999999988875431 124567899999999999
Q ss_pred eCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec
Q 028493 92 VGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV 171 (208)
Q Consensus 92 vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~ 171 (208)
+|++++.+++||+|++.+...|+.|..|.+++++.|.+..+ .|....| ++++|+.++.
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~ 138 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIFQDG-------------------GYAEYVIVPH 138 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeeeccC-------------------cceeeEEecH
Confidence 99999999999999999889999999999999999977532 1112233 8999999999
Q ss_pred CcEEEcCCCCCccceeeccchhHHHhheee
Q 028493 172 THVVKITPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 172 ~~v~~ip~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
..++++|+++++.+++.+.+.+.|||+++.
T Consensus 139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~ 168 (350)
T cd08240 139 SRYLVDPGGLDPALAATLACSGLTAYSAVK 168 (350)
T ss_pred HHeeeCCCCCCHHHeehhhchhhhHHHHHH
Confidence 999999999999999999999999998863
No 46
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.89 E-value=1.1e-22 Score=175.16 Aligned_cols=161 Identities=30% Similarity=0.424 Sum_probs=135.1
Q ss_pred eeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCC
Q 028493 24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGD 103 (208)
Q Consensus 24 ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd 103 (208)
|+++++..+..|++++++.|+++++||+|||.++++|++|++.+.|.... ..+|.++|||++|+|+++|+++++|++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (337)
T cd05283 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGP-TKYPLVPGHEIVGIVVAVGSKVTKFKVGD 79 (337)
T ss_pred CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCC-CCCCcccCcceeeEEEEECCCCcccCCCC
Confidence 57888888877999999999999999999999999999999999887643 45688999999999999999999999999
Q ss_pred EEe-eeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493 104 LVL-PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (208)
Q Consensus 104 ~V~-~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~ 182 (208)
+|+ ......|++|.+|+.++.|+|+...... .|....| ....|+|+||+.++...++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~g~~~~~~~v~~~~~~~lp~~~~ 144 (337)
T cd05283 80 RVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGKYPDG--------------TITQGGYADHIVVDERFVFKIPEGLD 144 (337)
T ss_pred EEEEecCCCCCCCCccccCCchhcCcchhhcc-cccccCC--------------CcCCCcceeEEEechhheEECCCCCC
Confidence 997 4445689999999999999998865420 0100001 01123899999999999999999999
Q ss_pred ccceeeccchhHHHhhee
Q 028493 183 LDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 183 ~~~aa~l~~~~~ta~~al 200 (208)
+++++.+.+.+.|||+++
T Consensus 145 ~~~aa~l~~~~~ta~~~~ 162 (337)
T cd05283 145 SAAAAPLLCAGITVYSPL 162 (337)
T ss_pred HHHhhhhhhHHHHHHHHH
Confidence 999999999999999875
No 47
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.89 E-value=1.2e-22 Score=172.86 Aligned_cols=156 Identities=26% Similarity=0.416 Sum_probs=134.0
Q ss_pred eeeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
|||+++...+. .+++++.+.|++.++||+||+.++++|++|++.+.|.+......|.++|||++|+|+.+|++++.|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 68999984433 2788888888889999999999999999999998886553335578999999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+.....+|+.|.+|..+.+|+|....+ .|....| ++++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~~~~~~~~~~~~p~~ 138 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVDG-------------------GYAEYVAVPARNLLPIPDN 138 (342)
T ss_pred CCCEEEEccccccccchhhccccccccccccc---cccccCc-------------------ceeEEEEechHHceeCCCC
Confidence 99999999889999999999999999987532 3333334 8999999999999999999
Q ss_pred CCccceeeccchhHHHhhee
Q 028493 181 IPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al 200 (208)
+++++++.+++...+||+++
T Consensus 139 ~~~~~a~~~~~~~~~a~~~l 158 (342)
T cd08266 139 LSFEEAAAAPLTFLTAWHML 158 (342)
T ss_pred CCHHHHHhhhhHHHHHHHHH
Confidence 99999988888889999875
No 48
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.89 E-value=1.6e-22 Score=172.97 Aligned_cols=155 Identities=35% Similarity=0.580 Sum_probs=136.0
Q ss_pred eeeEEEecCCC----CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493 23 CRAAISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE 98 (208)
Q Consensus 23 ~ka~~~~~~~~----~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~ 98 (208)
||++++.+++. ++++.+.+.|.++++||+||+.++++|++|++.+.|.++. ...|.++|||++|+|+.+|+++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~ 79 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVTR 79 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEECCCCCC
Confidence 68999988883 4888888888899999999999999999999998887654 356789999999999999999999
Q ss_pred CCCCCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493 99 VREGDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (208)
Q Consensus 99 ~~vGd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i 177 (208)
+++||+|++.+. .+|++|.+|+.+++++|+..++ .|...+| +|++|+.++...++++
T Consensus 80 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~l 137 (329)
T cd08298 80 FSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------------------GYAEYMVADERFAYPI 137 (329)
T ss_pred CcCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------------------ceEEEEEecchhEEEC
Confidence 999999987654 6899999999999999998764 3333344 8999999999999999
Q ss_pred CCCCCccceeeccchhHHHhhee
Q 028493 178 TPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 178 p~~~~~~~aa~l~~~~~ta~~al 200 (208)
|+++++.+++.+++.+.|||+++
T Consensus 138 p~~~~~~~~~~~~~~~~ta~~~~ 160 (329)
T cd08298 138 PEDYDDEEAAPLLCAGIIGYRAL 160 (329)
T ss_pred CCCCCHHHhhHhhhhhHHHHHHH
Confidence 99999999999999999999886
No 49
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.89 E-value=2.6e-22 Score=172.98 Aligned_cols=156 Identities=31% Similarity=0.552 Sum_probs=136.6
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||+++..++.++++++.+.|.+.++||+||+.++++|++|+..+.|.++. ..+|.++|+|++|+|+.+|+++..+++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~~~~~~~G 79 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSRWRVG 79 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEECCCCccCCCC
Confidence 799999988877999999999999999999999999999999988887654 4568899999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITPD 180 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~~ 180 (208)
|+|++.....|++|.+|..|..|+|+.... .+...+| +|++|+.++.. .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~iP~~ 137 (345)
T cd08260 80 DRVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHPG-------------------SFAEYVAVPRADVNLVRLPDD 137 (345)
T ss_pred CEEEECCCCCCCCCccccCcCcccCCCCcc---cccCCCC-------------------cceeEEEcccccCceEECCCC
Confidence 999987777899999999999999998642 2222234 99999999974 89999999
Q ss_pred CCccceeeccchhHHHhheee
Q 028493 181 IPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++.++..++|||+++.
T Consensus 138 ~~~~~aa~l~~~~~ta~~~l~ 158 (345)
T cd08260 138 VDFVTAAGLGCRFATAFRALV 158 (345)
T ss_pred CCHHHhhhhccchHHHHHHHH
Confidence 999999988889999999863
No 50
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.88 E-value=4.8e-22 Score=173.92 Aligned_cols=163 Identities=26% Similarity=0.372 Sum_probs=133.2
Q ss_pred eeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
||++++.+++. +++++++.|.+ +++||+|||.++++|++|++.+.|.++. ..|.++|||++|+|+++|++++.+++
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~--~~p~~~g~e~~G~V~~vG~~v~~~~~ 77 (375)
T cd08282 1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGA--EPGLVLGHEAMGEVEEVGSAVESLKV 77 (375)
T ss_pred CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCC--CCCceeccccEEEEEEeCCCCCcCCC
Confidence 68899988875 99999999996 7999999999999999999999887654 56889999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP 179 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~ 179 (208)
||+|+..+..+|+.|..|+.++.+.|...... ++....| ..+ .....|+|++|++++.. .++++|+
T Consensus 78 Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~--~~~~~~~------~~~----~~~~~g~~a~y~~v~~~~~~~~~lP~ 145 (375)
T cd08282 78 GDRVVVPFNVACGRCRNCKRGLTGVCLTVNPG--RAGGAYG------YVD----MGPYGGGQAEYLRVPYADFNLLKLPD 145 (375)
T ss_pred CCEEEEeCCCCCCCCHHHHCcCcccCCCCCcc--ccccccc------ccc----cCCCCCeeeeEEEeecccCcEEECCC
Confidence 99999998999999999999999999764321 0000011 000 00012499999999975 8999999
Q ss_pred CCCcc---ceeeccchhHHHhhee
Q 028493 180 DIPLD---IACLLSCGVSTGNYRT 200 (208)
Q Consensus 180 ~~~~~---~aa~l~~~~~ta~~al 200 (208)
+++++ +++.+....+|||+++
T Consensus 146 ~~~~~~~~~~a~~~~~~~ta~~a~ 169 (375)
T cd08282 146 RDGAKEKDDYLMLSDIFPTGWHGL 169 (375)
T ss_pred CCChhhhhheeeecchHHHHHHHH
Confidence 99998 5677888899999986
No 51
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.88 E-value=3.1e-22 Score=172.47 Aligned_cols=155 Identities=28% Similarity=0.416 Sum_probs=134.3
Q ss_pred eeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
|||++++++++ +++++.+.|+| +++||+|||.++++|++|++.+.|.++. ...|.++|||++|+|+++|++++++++
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~v~~~~~ 78 (345)
T cd08286 1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT-VTPGRILGHEGVGVVEEVGSAVTNFKV 78 (345)
T ss_pred CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC-CCCCceecccceEEEEEeccCccccCC
Confidence 68999998886 99999999986 8999999999999999999999887654 345789999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP 179 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~ 179 (208)
||+|+......|+.|.+|..+.++.|....+. .|....| +|++|+.++.. .++++|+
T Consensus 79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-------------------~~~~~~~v~~~~~~~~~lp~ 137 (345)
T cd08286 79 GDRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLIDG-------------------TQAEYVRIPHADNSLYKLPE 137 (345)
T ss_pred CCEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccCC-------------------eeeeEEEcccccCceEECCC
Confidence 99999988889999999999999988765432 1222233 99999999987 8999999
Q ss_pred CCCccceeeccchhHHHhhee
Q 028493 180 DIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~al 200 (208)
+++..+++.+++.++|||.++
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~~ 158 (345)
T cd08286 138 GVDEEAAVMLSDILPTGYECG 158 (345)
T ss_pred CCCHHHhhhccchhHHHHHHH
Confidence 999999999988999999864
No 52
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.88 E-value=3.5e-22 Score=176.98 Aligned_cols=135 Identities=21% Similarity=0.277 Sum_probs=111.9
Q ss_pred eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhh-cCCCCC-----CCCCCceeccceeEEEEEeCC
Q 028493 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW-RSTQPP-----MAVFPRILGHEAVGVVESVGG 94 (208)
Q Consensus 21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~-~g~~~~-----~~~~p~~~G~e~~G~Vv~vG~ 94 (208)
++||++++++++. +++++++.|+++++||+|||.+++||++|++.+ .|.... ...+|.++|||++|+|+++|+
T Consensus 1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 3589999999886 999999999999999999999999999999976 453211 124688999999999999999
Q ss_pred CCC-CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC-
Q 028493 95 GVE-EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT- 172 (208)
Q Consensus 95 ~v~-~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~- 172 (208)
+|+ +|++||||+..+...|+.|..|.. +|...+| +|+||++++..
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~~--------------~g~~~~G-------------------~~aey~~v~~~~ 126 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCPG--------------YSYTYPG-------------------GLATYHIIPNEV 126 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCCC--------------ccccCCC-------------------cceEEEEecHHh
Confidence 998 699999999988888888877631 2222334 99999999986
Q ss_pred ---cEEEcCCCCCccceeec
Q 028493 173 ---HVVKITPDIPLDIACLL 189 (208)
Q Consensus 173 ---~v~~ip~~~~~~~aa~l 189 (208)
.++++|+++++++++++
T Consensus 127 ~~~~~~~lP~~l~~~~aal~ 146 (410)
T cd08238 127 MEQDCLLIYEGDGYAEASLV 146 (410)
T ss_pred ccCCeEECCCCCCHHHHhhc
Confidence 58999999999988754
No 53
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.88 E-value=2.7e-22 Score=176.26 Aligned_cols=161 Identities=18% Similarity=0.137 Sum_probs=134.7
Q ss_pred cceeeeeEEEec--CCC---CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCC---------CCCCceeccc
Q 028493 19 KIIRCRAAISRI--PGK---PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPM---------AVFPRILGHE 84 (208)
Q Consensus 19 ~~~~~ka~~~~~--~~~---~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~---------~~~p~~~G~e 84 (208)
.|.+|||++++. .+. .+++++++.|+++++||+|||.++++|++|++.+.|..... ...+.++|||
T Consensus 9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e 88 (393)
T cd08246 9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD 88 (393)
T ss_pred CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence 678899999863 232 27889999999999999999999999999999887652110 0122589999
Q ss_pred eeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCC-CCCCcccccCCCceeeeccCcccc
Q 028493 85 AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMP-RDGTNRFRDLKGEVIHNVLNVSSF 163 (208)
Q Consensus 85 ~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~-~~G~~~~~~~~~~~~~~~~~~g~~ 163 (208)
++|+|+++|++++.+++||+|++.+...|+.|..|..+..++|+.... +|.. .+| +|
T Consensus 89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~g-------------------~~ 146 (393)
T cd08246 89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNYG-------------------SF 146 (393)
T ss_pred eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCCC-------------------cc
Confidence 999999999999999999999999989999999999999999986543 2221 223 99
Q ss_pred cceEEEecCcEEEcCCCCCccceeeccchhHHHhheee
Q 028493 164 TEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 164 ~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
++|++++...++++|+++++++++.+.+.+.|||+++.
T Consensus 147 a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~ 184 (393)
T cd08246 147 AQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLF 184 (393)
T ss_pred eeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHh
Confidence 99999999999999999999999988899999999864
No 54
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.87 E-value=6.9e-22 Score=174.23 Aligned_cols=161 Identities=20% Similarity=0.177 Sum_probs=134.2
Q ss_pred cceeeeeEEEec--CCC---CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC---------CCCCC-ceecc
Q 028493 19 KIIRCRAAISRI--PGK---PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP---------MAVFP-RILGH 83 (208)
Q Consensus 19 ~~~~~ka~~~~~--~~~---~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~---------~~~~p-~~~G~ 83 (208)
.|.+|||+++.. +++ .+++.+.+.|.++++||+||+.++++|++|++...+.... ....| .++||
T Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~ 83 (398)
T TIGR01751 4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS 83 (398)
T ss_pred cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence 467899999954 453 3899999999999999999999999999998876554211 00123 37999
Q ss_pred ceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCccc
Q 028493 84 EAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSS 162 (208)
Q Consensus 84 e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~ 162 (208)
|++|+|+++|++++.+++||+|+..+...|++|++|+.|+.+.|+..+. .|. ..+| +
T Consensus 84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~g-------------------~ 141 (398)
T TIGR01751 84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETNFG-------------------S 141 (398)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCCCc-------------------c
Confidence 9999999999999999999999999999999999999999999976542 111 1123 9
Q ss_pred ccceEEEecCcEEEcCCCCCccceeeccchhHHHhheee
Q 028493 163 FTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 163 ~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
|+||++++...++++|+++++++++.+.+...|||+++.
T Consensus 142 ~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~ 180 (398)
T TIGR01751 142 FAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLV 180 (398)
T ss_pred ceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHh
Confidence 999999999999999999999999988899999999864
No 55
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.87 E-value=7.6e-22 Score=169.94 Aligned_cols=153 Identities=29% Similarity=0.476 Sum_probs=127.6
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC--CCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP--PMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~--~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
||++++.+++..+++.+.+.|.|+++||+||+.++++|++|++.+.+... .....|.++|||++|+|+++|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 68999988887799999999999999999999999999999987665321 1124577899999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+..+..+|..|..|+.+++|+|+..++ .+...+| +|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~iP~~ 138 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRPG-------------------AFAEYLVIPAFNVWKIPDD 138 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCCC-------------------cceeeEEechHHeEECcCC
Confidence 99999999889999999999999999987543 2222334 9999999999999999999
Q ss_pred CCccceeeccchhHHHhh
Q 028493 181 IPLDIACLLSCGVSTGNY 198 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~ 198 (208)
+++++++.+ ..+.+++.
T Consensus 139 l~~~~~~~~-~~~~~~~~ 155 (341)
T PRK05396 139 IPDDLAAIF-DPFGNAVH 155 (341)
T ss_pred CCHHHhHhh-hHHHHHHH
Confidence 998887644 34444443
No 56
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.87 E-value=1.1e-21 Score=170.89 Aligned_cols=176 Identities=32% Similarity=0.541 Sum_probs=139.9
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC---C
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE---V 99 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~---~ 99 (208)
|||+++..++.++++++.+.|.++++||+||+.++++|++|+..+.+.++. .+|.++|||++|+|+.+|+++++ |
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~vG~~~~~~~~~ 78 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEVGPNVENPYGL 78 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEeCCCCCCCCcC
Confidence 689999988767999999999999999999999999999999988887654 66789999999999999999988 9
Q ss_pred CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCC-CCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS-MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (208)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g-~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip 178 (208)
++||+|++.+..+|+.|.+|..+.+++|++.......+ ....|..++....+..+.. ...|+|++|+.++...++++|
T Consensus 79 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~P 157 (367)
T cd08263 79 SVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYM-YSMGGLAEYAVVPATALAPLP 157 (367)
T ss_pred CCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCcccc-ccCCcceeEEEechhhEEECC
Confidence 99999999888899999999999999999764210011 0111111111000000000 113489999999999999999
Q ss_pred CCCCccceeeccchhHHHhheee
Q 028493 179 PDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 179 ~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++++.+++.+++.++|||+++.
T Consensus 158 ~~is~~~aa~l~~~~~tA~~~l~ 180 (367)
T cd08263 158 ESLDYTESAVLGCAGFTAYGALK 180 (367)
T ss_pred CCCCHHHHhHhcchHHHHHHHHH
Confidence 99999999999999999999873
No 57
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.87 E-value=1.1e-21 Score=167.76 Aligned_cols=154 Identities=36% Similarity=0.567 Sum_probs=134.2
Q ss_pred eeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCC
Q 028493 24 RAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGD 103 (208)
Q Consensus 24 ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd 103 (208)
||+++++++..+++++.+.|.+.++||+||+.++++|++|.+.+.|.... ..+|.++|||++|+|+.+|++++++++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd 79 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEVGAGVEGRKVGD 79 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEECCCCcccccCC
Confidence 68899988666999999999999999999999999999999998887643 35678999999999999999999999999
Q ss_pred EEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493 104 LVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (208)
Q Consensus 104 ~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~ 182 (208)
+|+.... ..|++|++|+++.+|.|++..+ .+....| +|++|+.++...++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~ 137 (330)
T cd08245 80 RVGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQG-------------------GYAEYMVADAEYTVLLPDGLP 137 (330)
T ss_pred EEEEccccCCCCCChhhhCcCcccCcCccc---cCcccCC-------------------ccccEEEEcHHHeEECCCCCC
Confidence 9987544 6799999999999999998654 2222334 899999999999999999999
Q ss_pred ccceeeccchhHHHhhee
Q 028493 183 LDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 183 ~~~aa~l~~~~~ta~~al 200 (208)
+++++.+.+...|||+++
T Consensus 138 ~~~~~~l~~~~~ta~~~l 155 (330)
T cd08245 138 LAQAAPLLCAGITVYSAL 155 (330)
T ss_pred HHHhhhhhhhHHHHHHHH
Confidence 999998888999999876
No 58
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.87 E-value=1.2e-21 Score=168.54 Aligned_cols=158 Identities=27% Similarity=0.433 Sum_probs=133.6
Q ss_pred eeeEEEecCCCCeEEEEeecCCCC-CCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPK-AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~-~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
|||+++..++. +++++++.|.|. ++||+|||.++++|+.|.+...|.++. ..|.++|+|++|+|+++|++++.+++
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~ 77 (344)
T cd08284 1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS--TPGFVLGHEFVGEVVEVGPEVRTLKV 77 (344)
T ss_pred CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCCcccccceEEEEEeeCCCccccCC
Confidence 68999988764 999999999985 999999999999999999988886653 45788999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP 179 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~ 179 (208)
||+|++.+..+|++|.+|..+..+.|+.... +|.. + .....|+|++|+.++.. .++++|+
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~-------------~~~~~g~~~~~~~v~~~~~~~~~~p~ 139 (344)
T cd08284 78 GDRVVSPFTIACGECFYCRRGQSGRCAKGGL---FGYA--G-------------SPNLDGAQAEYVRVPFADGTLLKLPD 139 (344)
T ss_pred CCEEEEcccCCCCCChHHhCcCcccCCCCcc---cccc--c-------------cCCCCCceeEEEEcccccCceEECCC
Confidence 9999998888999999999999999976532 1100 0 00012499999999964 9999999
Q ss_pred CCCccceeeccchhHHHhheee
Q 028493 180 DIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~al~ 201 (208)
++++++++++++.++|||+++.
T Consensus 140 ~l~~~~a~~l~~~~~ta~~~~~ 161 (344)
T cd08284 140 GLSDEAALLLGDILPTGYFGAK 161 (344)
T ss_pred CCCHHHhhhhcCchHHHHhhhH
Confidence 9999999999999999998873
No 59
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.87 E-value=9.7e-22 Score=168.01 Aligned_cols=157 Identities=31% Similarity=0.504 Sum_probs=137.8
Q ss_pred eeeEEEecCCCC-eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPGKP-LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~~~-l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
||++++..++++ |.+++.+.|.++++||+||+.++++|+.|.+...|.++...+.|.++|+|++|+|+.+|++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~ 80 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV 80 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence 699999999887 6778888888999999999999999999999988877643466789999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
||+|+..+..+|+.|.+|..++.++|..... .|....| +|++|+.++...++++|+++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~ 138 (338)
T cd08254 81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGIDG-------------------GFAEYIVVPARALVPVPDGV 138 (338)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccCC-------------------cceeeEEechHHeEECCCCC
Confidence 9999998889999999999999999965432 2222234 89999999999999999999
Q ss_pred CccceeeccchhHHHhheee
Q 028493 182 PLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al~ 201 (208)
++++++.++..++|||+++.
T Consensus 139 ~~~~a~~~~~~~~ta~~~l~ 158 (338)
T cd08254 139 PFAQAAVATDAVLTPYHAVV 158 (338)
T ss_pred CHHHhhhhcchHHHHHHHHH
Confidence 99999999899999999864
No 60
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.87 E-value=1.9e-21 Score=167.49 Aligned_cols=153 Identities=30% Similarity=0.420 Sum_probs=127.5
Q ss_pred eeeEEEecCCCCeEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
||+++++++++ +++++.+.|.| +++||+||+.++++|++|++.+.|.++. ..|.++|||++|+|+++|+++..+++
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~~ 77 (345)
T cd08287 1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEVGSEVTSVKP 77 (345)
T ss_pred CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC--CCCcccccceEEEEEEeCCCCCccCC
Confidence 68999998776 99999999996 8999999999999999999988887653 45789999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC--cEEEcCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--HVVKITP 179 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--~v~~ip~ 179 (208)
||+|+......|+.|.+|..|..++|..... .|...+| +|++|+.++.. .++++|+
T Consensus 78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~ 135 (345)
T cd08287 78 GDFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------------GQGEYVRVPLADGTLVKVPG 135 (345)
T ss_pred CCEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------------ceEEEEEcchhhCceEECCC
Confidence 9999886677899999999999999986543 3334445 99999999964 8999999
Q ss_pred CCCcccee-----eccchhHHHhhee
Q 028493 180 DIPLDIAC-----LLSCGVSTGNYRT 200 (208)
Q Consensus 180 ~~~~~~aa-----~l~~~~~ta~~al 200 (208)
+++++.+. .+...+.|||+++
T Consensus 136 ~l~~~~~~~~~~~~l~~~~~~a~~~~ 161 (345)
T cd08287 136 SPSDDEDLLPSLLALSDVMGTGHHAA 161 (345)
T ss_pred CCChhhhhhhhhHhhhcHHHHHHHHH
Confidence 99873221 1225677888765
No 61
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.86 E-value=2.9e-21 Score=168.06 Aligned_cols=155 Identities=23% Similarity=0.384 Sum_probs=124.2
Q ss_pred eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCCCC
Q 028493 22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEV 99 (208)
Q Consensus 22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~~~ 99 (208)
.++++++.++.. +++++.+.|.++++||+|||.++++|++|++.+.+.... ....|.++|||++|+|+++|+++++|
T Consensus 17 ~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~ 95 (364)
T PLN02702 17 ENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHL 95 (364)
T ss_pred ccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCC
Confidence 355565666655 999999888899999999999999999999988763211 12357789999999999999999999
Q ss_pred CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCC-CCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQS-MPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (208)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g-~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip 178 (208)
++||+|+..+...|++|..|+.|.+++|+.... ++ ...+| +|++|+.++...++++|
T Consensus 96 ~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~g-------------------~~~~y~~v~~~~~~~~P 153 (364)
T PLN02702 96 VVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVHG-------------------SLANQVVHPADLCFKLP 153 (364)
T ss_pred CCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCCC-------------------cccceEEcchHHeEECC
Confidence 999999999999999999999999999987432 11 11234 99999999999999999
Q ss_pred CCCCccceeeccchhHHHhhee
Q 028493 179 PDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 179 ~~~~~~~aa~l~~~~~ta~~al 200 (208)
++++++++++. ....++|+++
T Consensus 154 ~~l~~~~aa~~-~~~~~a~~~~ 174 (364)
T PLN02702 154 ENVSLEEGAMC-EPLSVGVHAC 174 (364)
T ss_pred CCCCHHHHhhh-hHHHHHHHHH
Confidence 99999887752 2334466553
No 62
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.86 E-value=1.7e-21 Score=166.41 Aligned_cols=136 Identities=22% Similarity=0.410 Sum_probs=109.6
Q ss_pred eeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCC-hhhhhhhcCCCCCC--CCCCceeccceeEEEEEeCCCCCC
Q 028493 22 RCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLC-HSDVTFWRSTQPPM--AVFPRILGHEAVGVVESVGGGVEE 98 (208)
Q Consensus 22 ~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~-~sD~~~~~g~~~~~--~~~p~~~G~e~~G~Vv~vG~~v~~ 98 (208)
+||++++.+++. +++++++.|+|+++||+|||.+++|| ++|++.+.|.++.. ..+|.++|||++|+|+++|+++ +
T Consensus 1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~ 78 (308)
T TIGR01202 1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G 78 (308)
T ss_pred CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence 378999998776 99999999999999999999999996 79999888876431 2579999999999999999998 6
Q ss_pred CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493 99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (208)
Q Consensus 99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip 178 (208)
|++||||+.. |..|..|..+ ..| +|+||+++|.+.++++|
T Consensus 79 ~~vGdrV~~~----~~~c~~~~~~-----------------~~G-------------------~~aey~~v~~~~~~~ip 118 (308)
T TIGR01202 79 FRPGDRVFVP----GSNCYEDVRG-----------------LFG-------------------GASKRLVTPASRVCRLD 118 (308)
T ss_pred CCCCCEEEEe----Cccccccccc-----------------cCC-------------------cccceEEcCHHHceeCC
Confidence 9999999873 2233222110 123 99999999999999999
Q ss_pred CCCCccceeeccchhHHHhheee
Q 028493 179 PDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 179 ~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
++++++. +++. .+.|||+++.
T Consensus 119 ~~~~~~~-a~~~-~~~~a~~~~~ 139 (308)
T TIGR01202 119 PALGPQG-ALLA-LAATARHAVA 139 (308)
T ss_pred CCCCHHH-Hhhh-HHHHHHHHHH
Confidence 9998764 4443 4689999874
No 63
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.86 E-value=7.4e-22 Score=163.53 Aligned_cols=143 Identities=27% Similarity=0.399 Sum_probs=128.8
Q ss_pred ccccccceeeeeEEEecCCCC---eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEE
Q 028493 14 SSTAGKIIRCRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVE 90 (208)
Q Consensus 14 ~~~~~~~~~~ka~~~~~~~~~---l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv 90 (208)
+++..++...|++++...++| +++++.++|....++|+||..|+.||++|+..++|.||...++|.+-|.|++|+|+
T Consensus 11 ssa~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv 90 (354)
T KOG0025|consen 11 SSASQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVV 90 (354)
T ss_pred ccccccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEE
Confidence 444467888999999999988 88899999998888899999999999999999999999988899999999999999
Q ss_pred EeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEe
Q 028493 91 SVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVD 170 (208)
Q Consensus 91 ~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~ 170 (208)
++|++++.|++||+|+.... +.|+|++|.+.+
T Consensus 91 ~vGs~vkgfk~Gd~VIp~~a------------------------------------------------~lGtW~t~~v~~ 122 (354)
T KOG0025|consen 91 AVGSNVKGFKPGDWVIPLSA------------------------------------------------NLGTWRTEAVFS 122 (354)
T ss_pred EecCCcCccCCCCeEeecCC------------------------------------------------CCccceeeEeec
Confidence 99999999999999987543 134999999999
Q ss_pred cCcEEEcCCCCCccceeeccchhHHHhheeeeeE
Q 028493 171 VTHVVKITPDIPLDIACLLSCGVSTGNYRTLVDV 204 (208)
Q Consensus 171 ~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~~~~ 204 (208)
++.++++++.++.+.||.+.+..+|||..|..-+
T Consensus 123 e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv 156 (354)
T KOG0025|consen 123 ESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFV 156 (354)
T ss_pred ccceEEcCCcCChhhhheeccCchHHHHHHHHHH
Confidence 9999999999999999999999999999885443
No 64
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.86 E-value=5.2e-21 Score=164.45 Aligned_cols=153 Identities=31% Similarity=0.514 Sum_probs=132.5
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
||++++++++. +.+++.+.|++.+++|+|||.++++|++|+..+.|.++. ...|.++|+|++|+|+++|++++.+++|
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~-~~~~~~~g~~~~G~V~~~G~~v~~~~~G 78 (343)
T cd08235 1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTD-LKPPRILGHEIAGEIVEVGDGVTGFKVG 78 (343)
T ss_pred CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCcc-CCCCcccccceEEEEEeeCCCCCCCCCC
Confidence 68999988775 999999999999999999999999999999988876532 3456789999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCc-----EEEc
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH-----VVKI 177 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~-----v~~i 177 (208)
|+|++.....|++|+.|..+..++|....+ .|....| +|++|+.++... ++++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~~~~~~~~~~l 136 (343)
T cd08235 79 DRVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYDG-------------------GFAEYVRVPAWAVKRGGVLKL 136 (343)
T ss_pred CEEEEccCCCCCCChHHHCcCcccCCCcce---eccCCCC-------------------cceeeEEecccccccccEEEC
Confidence 999999889999999999999999977653 2322334 999999999988 9999
Q ss_pred CCCCCccceeeccchhHHHhhee
Q 028493 178 TPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 178 p~~~~~~~aa~l~~~~~ta~~al 200 (208)
|+++++.+++.+ ..+.|||+++
T Consensus 137 P~~~~~~~aa~~-~~~~~a~~~l 158 (343)
T cd08235 137 PDNVSFEEAALV-EPLACCINAQ 158 (343)
T ss_pred CCCCCHHHHHhh-hHHHHHHHHH
Confidence 999999988765 6788999876
No 65
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.86 E-value=7e-21 Score=163.55 Aligned_cols=152 Identities=34% Similarity=0.600 Sum_probs=129.3
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||++++.++. +++.+++.|.++++||+|||.++++|+.|.....+.++. ..+|.++|+|++|+|+.+|++++.+++|
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~~~~~~g~e~~G~V~~~G~~v~~~~~G 78 (337)
T cd08261 1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF-ASYPRILGHELSGEVVEVGEGVAGLKVG 78 (337)
T ss_pred CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc-CCCCcccccccEEEEEEeCCCCCCCCCC
Confidence 68999998875 999999999999999999999999999999988876654 3457889999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~ 182 (208)
|+|+.....+|+.|..|+.++.|.|..... .+....| +|++|+.++.. ++++|++++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~-~~~~p~~~~ 135 (337)
T cd08261 79 DRVVVDPYISCGECYACRKGRPNCCENLQV---LGVHRDG-------------------GFAEYIVVPAD-ALLVPEGLS 135 (337)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCCCCCe---eeecCCC-------------------cceeEEEechh-eEECCCCCC
Confidence 999998888999999999999999954322 1111233 89999999999 999999999
Q ss_pred ccceeeccchhHHHhhee
Q 028493 183 LDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 183 ~~~aa~l~~~~~ta~~al 200 (208)
+++++++ ...+++++++
T Consensus 136 ~~~aa~~-~~~~~a~~~~ 152 (337)
T cd08261 136 LDQAALV-EPLAIGAHAV 152 (337)
T ss_pred HHHhhhh-chHHHHHHHH
Confidence 9988766 4667777664
No 66
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.85 E-value=9.7e-21 Score=162.79 Aligned_cols=157 Identities=31% Similarity=0.526 Sum_probs=135.8
Q ss_pred eeeEEEecCC-CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~-~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
|||+++.+++ ..+++++++.|.+.++||+||+.+.++|++|.+.+.|.++.....|.++|||++|+|+++|++++.+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~ 80 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV 80 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence 7899998876 339999999999999999999999999999999888876543455678999999999999999999999
Q ss_pred CCEEeeec-cCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 102 GDLVLPVF-QGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 102 Gd~V~~~~-~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
||+|+..+ ...|+.|.+|+.++.+.|+.... .|....| +|++|+.++...++++|++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~s~~~~~~~~~~~lp~~ 138 (341)
T cd08297 81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVDG-------------------TFAEYAIADARYVTPIPDG 138 (341)
T ss_pred CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccCC-------------------cceeEEEeccccEEECCCC
Confidence 99998765 47899999999999999988654 2333344 8999999999999999999
Q ss_pred CCccceeeccchhHHHhheee
Q 028493 181 IPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++.++....|||+++.
T Consensus 139 ~~~~~~a~l~~~~~ta~~~~~ 159 (341)
T cd08297 139 LSFEQAAPLLCAGVTVYKALK 159 (341)
T ss_pred CCHHHHHHHHcchHHHHHHHH
Confidence 999999888889999998863
No 67
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.85 E-value=6.5e-21 Score=164.01 Aligned_cols=152 Identities=31% Similarity=0.513 Sum_probs=132.4
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||+++++.+. +.+++.+.|+++++||+||+.++++|++|.....+.+.. ..|.++|+|++|+|+.+|++++.|++|
T Consensus 1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~--~~~~~~g~~~~G~V~~~g~~v~~~~~G 77 (343)
T cd08236 1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY--HPPLVLGHEFSGTVEEVGSGVDDLAVG 77 (343)
T ss_pred CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC--CCCcccCcceEEEEEEECCCCCcCCCC
Confidence 68999998875 999999999999999999999999999999888876533 457889999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~ 182 (208)
|+|+......|..|.+|..+....|..... .|....| +|++|+.++...++++|++++
T Consensus 78 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lP~~~~ 135 (343)
T cd08236 78 DRVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRDG-------------------AFAEYVSVPARNLIKIPDHVD 135 (343)
T ss_pred CEEEEcCCCCCCCChhHHCcChhhCCCcce---EecccCC-------------------cccceEEechHHeEECcCCCC
Confidence 999998888899999999999999877532 3333334 999999999999999999999
Q ss_pred ccceeeccchhHHHhhee
Q 028493 183 LDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 183 ~~~aa~l~~~~~ta~~al 200 (208)
+++++++ ...+|||+++
T Consensus 136 ~~~aa~~-~~~~ta~~~l 152 (343)
T cd08236 136 YEEAAMI-EPAAVALHAV 152 (343)
T ss_pred HHHHHhc-chHHHHHHHH
Confidence 9988776 5678999886
No 68
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.85 E-value=8.4e-21 Score=161.75 Aligned_cols=146 Identities=23% Similarity=0.428 Sum_probs=124.3
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||+++.+++. +++++++.|+++++||+|||.++++|++|.+.+.|.++ .|.++|||++|+|+++|++ +++|
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~G~~---~~~G 72 (319)
T cd08242 1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEGPEA---ELVG 72 (319)
T ss_pred CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC----CCCccCceEEEEEEEeCCC---CCCC
Confidence 68999998764 99999999999999999999999999999999888653 4678999999999999998 6899
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCC-CCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSM-PRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
|+|...+..+|+.|.+|..|.++.|...+. .+. ..+| +|++|++++.+.++++|+++
T Consensus 73 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~ 130 (319)
T cd08242 73 KRVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG-------------------AFAEYLTLPLENLHVVPDLV 130 (319)
T ss_pred CeEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC-------------------ceEEEEEechHHeEECcCCC
Confidence 999999999999999999999999987653 222 1234 99999999999999999999
Q ss_pred CccceeeccchhHHHhhe
Q 028493 182 PLDIACLLSCGVSTGNYR 199 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~a 199 (208)
+.++++.+ ....++|.+
T Consensus 131 ~~~~aa~~-~~~~~~~~~ 147 (319)
T cd08242 131 PDEQAVFA-EPLAAALEI 147 (319)
T ss_pred CHHHhhhh-hHHHHHHHH
Confidence 99887753 344456654
No 69
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.85 E-value=8.2e-21 Score=161.77 Aligned_cols=155 Identities=27% Similarity=0.505 Sum_probs=130.9
Q ss_pred eeeEEEecCC-CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~-~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
||++++++.+ ..+++++++.|++.++||+|||.++++|++|.+...+.+.. ...|.++|+|++|+|+++|++++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~~ 79 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVEVGPDVEGWKV 79 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCc-CCCCeeeccceEEEEEEECCCcCcCCC
Confidence 5788888755 34999999999999999999999999999999888876522 245789999999999999999999999
Q ss_pred CCEEeeecc-CCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 102 GDLVLPVFQ-GDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 102 Gd~V~~~~~-~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
||+|+.... ..|+.|++|..+..+.|+..+. .|....| +|++|++++...++++|++
T Consensus 80 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lp~~ 137 (306)
T cd08258 80 GDRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQADG-------------------GFAEYVLVPEESLHELPEN 137 (306)
T ss_pred CCEEEEccCcCCCCCCcchhCcCcccCCCCce---eeecCCC-------------------ceEEEEEcchHHeEECcCC
Confidence 999998774 6899999999999999987532 2222234 9999999999999999999
Q ss_pred CCccceeeccchhHHHhheee
Q 028493 181 IPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++ +.....++|+++.
T Consensus 138 ~~~~~aa-~~~~~~~a~~~l~ 157 (306)
T cd08258 138 LSLEAAA-LTEPLAVAVHAVA 157 (306)
T ss_pred CCHHHHH-hhchHHHHHHHHH
Confidence 9998876 6667788988863
No 70
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.85 E-value=1e-20 Score=162.46 Aligned_cols=155 Identities=28% Similarity=0.467 Sum_probs=125.7
Q ss_pred EEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhc-CCCC-CCCCCCceeccceeEEEEEeCCCCCCCCCCCE
Q 028493 27 ISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWR-STQP-PMAVFPRILGHEAVGVVESVGGGVEEVREGDL 104 (208)
Q Consensus 27 ~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~-g~~~-~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~ 104 (208)
++++.+. +.+++.+.|+++++||+|||.++++|++|.+... +... .....|.++|+|++|+|+++|++|++|++||+
T Consensus 2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~ 80 (339)
T cd08232 2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR 80 (339)
T ss_pred eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence 5677766 9999999999999999999999999999988764 3221 11245779999999999999999999999999
Q ss_pred EeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCcc
Q 028493 105 VLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLD 184 (208)
Q Consensus 105 V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~ 184 (208)
|+..+.++|++|.+|..|..++|..+.+ ++... + ..+..|+|++|++++...++++|++++.+
T Consensus 81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~----~----------~~~~~g~~~~~v~v~~~~~~~iP~~~~~~ 143 (339)
T cd08232 81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAM----R----------FPHVQGGFREYLVVDASQCVPLPDGLSLR 143 (339)
T ss_pred EEEccCCcCCCChHHhCcCcccCccccc---eeecc----c----------cCCCCCceeeEEEechHHeEECcCCCCHH
Confidence 9999999999999999999999998643 11000 0 00012399999999999999999999998
Q ss_pred ceeeccchhHHHhhee
Q 028493 185 IACLLSCGVSTGNYRT 200 (208)
Q Consensus 185 ~aa~l~~~~~ta~~al 200 (208)
+++. ...++|+|+++
T Consensus 144 ~aa~-~~~~~~a~~~l 158 (339)
T cd08232 144 RAAL-AEPLAVALHAV 158 (339)
T ss_pred Hhhh-cchHHHHHHHH
Confidence 8865 56778888876
No 71
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.84 E-value=1.6e-20 Score=160.66 Aligned_cols=152 Identities=31% Similarity=0.510 Sum_probs=132.9
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
|||+++.+++. |++.+.+.|+++++||+||+.++++|++|.+...|.++. .+|.++|+|++|+|+.+|++++++++|
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~--~~p~~~g~~~~G~v~~vG~~v~~~~~G 77 (334)
T cd08234 1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA--APPLVPGHEFAGVVVAVGSKVTGFKVG 77 (334)
T ss_pred CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC--CCCcccccceEEEEEEeCCCCCCCCCC
Confidence 68999988775 999999999999999999999999999999998887655 467899999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~ 182 (208)
|+|+......|+.|.+|..++.++|..... +|....| +|++|+.++.+.++++|++++
T Consensus 78 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~ 135 (334)
T cd08234 78 DRVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRNG-------------------GFAEYVVVPAKQVYKIPDNLS 135 (334)
T ss_pred CEEEEcCCcCCCCCccccCcChhhCCCcce---eccCCCC-------------------cceeEEEecHHHcEECcCCCC
Confidence 999998888899999999999999987642 3333344 999999999999999999999
Q ss_pred ccceeeccchhHHHhhee
Q 028493 183 LDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 183 ~~~aa~l~~~~~ta~~al 200 (208)
+.+++.+ ..+.++++++
T Consensus 136 ~~~aa~~-~~~~~a~~~l 152 (334)
T cd08234 136 FEEAALA-EPLSCAVHGL 152 (334)
T ss_pred HHHHhhh-hHHHHHHHHH
Confidence 9888765 6677888765
No 72
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.84 E-value=1.4e-20 Score=162.29 Aligned_cols=153 Identities=29% Similarity=0.509 Sum_probs=126.5
Q ss_pred eEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC-C-CCCCCceeccceeEEEEEeCCCCCCCCCC
Q 028493 25 AAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP-P-MAVFPRILGHEAVGVVESVGGGVEEVREG 102 (208)
Q Consensus 25 a~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~-~-~~~~p~~~G~e~~G~Vv~vG~~v~~~~vG 102 (208)
++++.+++. +++++.+.|.+.++||+|||.++++|++|.+.+.+... . ....|.++|+|++|+|+++|+++++|++|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (343)
T cd05285 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG 79 (343)
T ss_pred CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence 467788865 99999999999999999999999999999987643211 1 11356789999999999999999999999
Q ss_pred CEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCC
Q 028493 103 DLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIP 182 (208)
Q Consensus 103 d~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~ 182 (208)
|+|++.+..+|++|++|+.|.+++|++..+.. .....| +|++|++++...++++|++++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~ 138 (343)
T cd05285 80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAA--TPPVDG-------------------TLCRYVNHPADFCHKLPDNVS 138 (343)
T ss_pred CEEEEccccCCCCChhHhCcCcccCcCccccc--cccCCC-------------------ceeeeEEecHHHcEECcCCCC
Confidence 99999888999999999999999999765310 011234 999999999999999999999
Q ss_pred ccceeeccchhHHHhhee
Q 028493 183 LDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 183 ~~~aa~l~~~~~ta~~al 200 (208)
+++++.+ ..+.+||+++
T Consensus 139 ~~~aa~~-~~~~~a~~~~ 155 (343)
T cd05285 139 LEEGALV-EPLSVGVHAC 155 (343)
T ss_pred HHHhhhh-hHHHHHHHHH
Confidence 9988766 4678888764
No 73
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.84 E-value=1.6e-20 Score=164.89 Aligned_cols=156 Identities=28% Similarity=0.491 Sum_probs=127.2
Q ss_pred eeeeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCC------CCCCCCCceeccceeEEEEEeCC
Q 028493 21 IRCRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ------PPMAVFPRILGHEAVGVVESVGG 94 (208)
Q Consensus 21 ~~~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~------~~~~~~p~~~G~e~~G~Vv~vG~ 94 (208)
..+.+.++... .|++++++.|.++++||+|||.++++|++|++.+.+.. +....+|.++|||++|+|+++|+
T Consensus 27 ~~~~~~~~~~~--~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 104 (384)
T cd08265 27 TNLGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGK 104 (384)
T ss_pred ccceeEEEeCC--CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECC
Confidence 34566666643 39999999999999999999999999999998876321 11235678999999999999999
Q ss_pred CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcE
Q 028493 95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV 174 (208)
Q Consensus 95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v 174 (208)
++++|++||+|++.+..+|+.|+.|+.|+.++|..... .|...+| +|++|+.++...+
T Consensus 105 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~v~v~~~~~ 162 (384)
T cd08265 105 NVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSADG-------------------AFAEYIAVNARYA 162 (384)
T ss_pred CCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCCC-------------------cceeeEEechHHe
Confidence 99999999999999999999999999999999986553 3332344 9999999999999
Q ss_pred EEcCCCC-------CccceeeccchhHHHhheee
Q 028493 175 VKITPDI-------PLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 175 ~~ip~~~-------~~~~aa~l~~~~~ta~~al~ 201 (208)
+++|+.+ +.+ ++++...+++||+++.
T Consensus 163 ~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~ 195 (384)
T cd08265 163 WEINELREIYSEDKAFE-AGALVEPTSVAYNGLF 195 (384)
T ss_pred EECCccccccccCCCHH-HhhhhhHHHHHHHHHH
Confidence 9999863 444 5556667889998873
No 74
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.84 E-value=8.9e-21 Score=162.34 Aligned_cols=129 Identities=26% Similarity=0.331 Sum_probs=111.2
Q ss_pred eeeEEEecCCCC-----eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493 23 CRAAISRIPGKP-----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE 97 (208)
Q Consensus 23 ~ka~~~~~~~~~-----l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~ 97 (208)
|||+++++++.+ +++++++.|.|+++||+|||.++++|++|++.+.|.++....+|.++|||++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 689999988753 788899999999999999999999999999999887654345789999999999999999999
Q ss_pred C-CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEE
Q 028493 98 E-VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVK 176 (208)
Q Consensus 98 ~-~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ 176 (208)
+ |++||+|+.... .+| +|+||++++...+++
T Consensus 81 ~~~~vGd~V~~~~~-----------------------------~~g-------------------~~a~~~~v~~~~~~~ 112 (324)
T cd08291 81 AQSLIGKRVAFLAG-----------------------------SYG-------------------TYAEYAVADAQQCLP 112 (324)
T ss_pred ccCCCCCEEEecCC-----------------------------CCC-------------------cchheeeecHHHeEE
Confidence 6 999999985321 013 899999999999999
Q ss_pred cCCCCCccceeeccchhHHHhhe
Q 028493 177 ITPDIPLDIACLLSCGVSTGNYR 199 (208)
Q Consensus 177 ip~~~~~~~aa~l~~~~~ta~~a 199 (208)
+|+++++++++.+.+...|||.+
T Consensus 113 iP~~~~~~~aa~~~~~~~ta~~~ 135 (324)
T cd08291 113 LPDGVSFEQGASSFVNPLTALGM 135 (324)
T ss_pred CCCCCCHHHHhhhcccHHHHHHH
Confidence 99999999988777788888754
No 75
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.84 E-value=2.4e-20 Score=160.71 Aligned_cols=155 Identities=31% Similarity=0.501 Sum_probs=127.1
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCC--CCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~--~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
||+++++.++..+++.+.+.|.|+++||+|||.++++|+.|++.+.+.. ......|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 6899999877669999999999999999999999999999988765432 11124567899999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+..+..+|+.|+.|..+++|+|+.... .|....| +|++|++++...++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~v~v~~~~~~~lP~~ 138 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKI---LGVDTDG-------------------CFAEYVVVPEENLWKNDKD 138 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCcccce---EeccCCC-------------------cceEEEEechHHcEECcCC
Confidence 99999998888999999999999999976432 2222233 8999999999999999999
Q ss_pred CCccceeeccchhHHHhhee
Q 028493 181 IPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al 200 (208)
++.+.+ ++...+.++|+++
T Consensus 139 ~~~~~a-~~~~~~~~a~~~~ 157 (341)
T cd05281 139 IPPEIA-SIQEPLGNAVHTV 157 (341)
T ss_pred CCHHHh-hhhhHHHHHHHHH
Confidence 988554 4555667777654
No 76
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.84 E-value=5.2e-21 Score=156.20 Aligned_cols=133 Identities=29% Similarity=0.319 Sum_probs=120.1
Q ss_pred ccceeeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493 18 GKIIRCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG 95 (208)
Q Consensus 18 ~~~~~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~ 95 (208)
..|...|.+++++.|.. +++++.|.|+|.++|++||..|+|+|..|..+.+|.+.. .+.|+++|-|++|+|+++|++
T Consensus 4 ~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~-~plPytpGmEaaGvVvAvG~g 82 (336)
T KOG1197|consen 4 ASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDP-APLPYTPGMEAAGVVVAVGEG 82 (336)
T ss_pred CCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCC-CCCCcCCCcccceEEEEecCC
Confidence 45777899999988875 899999999999999999999999999999999999842 488999999999999999999
Q ss_pred CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEE
Q 028493 96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVV 175 (208)
Q Consensus 96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~ 175 (208)
|+++++||||+-.. +.| .|+|+..+|...+.
T Consensus 83 vtdrkvGDrVayl~------------------------------~~g-------------------~yaee~~vP~~kv~ 113 (336)
T KOG1197|consen 83 VTDRKVGDRVAYLN------------------------------PFG-------------------AYAEEVTVPSVKVF 113 (336)
T ss_pred ccccccccEEEEec------------------------------cch-------------------hhheeccccceeec
Confidence 99999999997432 224 99999999999999
Q ss_pred EcCCCCCccceeeccchhHHHhhee
Q 028493 176 KITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 176 ~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
++|+.+++.+||++...++|||.-+
T Consensus 114 ~vpe~i~~k~aaa~llq~lTAy~ll 138 (336)
T KOG1197|consen 114 KVPEAITLKEAAALLLQGLTAYMLL 138 (336)
T ss_pred cCCcccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888999999766
No 77
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.84 E-value=3.2e-20 Score=159.53 Aligned_cols=143 Identities=25% Similarity=0.383 Sum_probs=119.4
Q ss_pred eeeEEEecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC----------CCCCCCceeccceeEEEEEe
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP----------PMAVFPRILGHEAVGVVESV 92 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~----------~~~~~p~~~G~e~~G~Vv~v 92 (208)
|||+++.++ .+++++++.|+++++||+|||.++++|++|++.+.|... .....|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 78 (341)
T cd08262 1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78 (341)
T ss_pred CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence 689999876 599999999999999999999999999999998887321 11235788999999999999
Q ss_pred CCCCCC-CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec
Q 028493 93 GGGVEE-VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV 171 (208)
Q Consensus 93 G~~v~~-~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~ 171 (208)
|+++++ |++||+|+..+...|+.|+.|..|. .....| +|+||+.++.
T Consensus 79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~-------------~~~~~g-------------------~~~~~~~v~~ 126 (341)
T cd08262 79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGL-------------SPEAPG-------------------GYAEYMLLSE 126 (341)
T ss_pred CCCCcCCCCCCCEEEecCCcCCCCChhhhCCC-------------CcCCCC-------------------ceeeeEEech
Confidence 999987 9999999999999999999994321 111223 8999999999
Q ss_pred CcEEEcCCCCCccceeeccchhHHHhhee
Q 028493 172 THVVKITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 172 ~~v~~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
..++++|+++++++++ ++..+++||+++
T Consensus 127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~~ 154 (341)
T cd08262 127 ALLLRVPDGLSMEDAA-LTEPLAVGLHAV 154 (341)
T ss_pred HHeEECCCCCCHHHhh-hhhhHHHHHHHH
Confidence 9999999999998876 556778898863
No 78
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.82 E-value=1.2e-19 Score=156.28 Aligned_cols=148 Identities=28% Similarity=0.335 Sum_probs=119.1
Q ss_pred eeeEEEecCCCC--eEEEE-eecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC-------------------CCCCCce
Q 028493 23 CRAAISRIPGKP--LVMEE-IEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP-------------------MAVFPRI 80 (208)
Q Consensus 23 ~ka~~~~~~~~~--l~~~~-~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~-------------------~~~~p~~ 80 (208)
||++++.+++.+ +.+.+ .+.|.+.++||+|||.++++|++|++.+.|.++. ...+|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 688888876643 55543 4777789999999999999999999988775431 2356889
Q ss_pred eccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCc
Q 028493 81 LGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNV 160 (208)
Q Consensus 81 ~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~ 160 (208)
+|||++|+|+++|+++++|++||+|+..+...|+.|..|.. | .. +|...+|
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~---~~---~~~~~~g------------------ 131 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----I---DY---IGSERDG------------------ 131 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----c---cc---cCCCCCc------------------
Confidence 99999999999999999999999999988778877655321 1 11 2212234
Q ss_pred ccccceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493 161 SSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 161 g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
+|++|+.++...++++|+++++++++.+.+.+.|||+++
T Consensus 132 -~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~ 170 (350)
T cd08274 132 -GFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML 170 (350)
T ss_pred -cceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH
Confidence 999999999999999999999999999999999999876
No 79
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.82 E-value=9.8e-20 Score=154.91 Aligned_cols=129 Identities=29% Similarity=0.373 Sum_probs=112.8
Q ss_pred eeeEEEecCCCC---eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493 23 CRAAISRIPGKP---LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV 99 (208)
Q Consensus 23 ~ka~~~~~~~~~---l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~ 99 (208)
|||+++.+++.+ +++++++.|.+.++||+|||.++++|++|++.+.|.++.....|.++|||++|+|+++|++|+.+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 689999887753 78899999999999999999999999999999988765323568899999999999999999999
Q ss_pred CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (208)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~ 179 (208)
++||+|+.... .| +|++|+.++...++++|+
T Consensus 81 ~~Gd~V~~~~~------------------------------~g-------------------~~~~~~~~~~~~~~~ip~ 111 (324)
T cd08292 81 QVGQRVAVAPV------------------------------HG-------------------TWAEYFVAPADGLVPLPD 111 (324)
T ss_pred CCCCEEEeccC------------------------------CC-------------------cceeEEEEchHHeEECCC
Confidence 99999986421 13 899999999999999999
Q ss_pred CCCccceeeccchhHHHhhee
Q 028493 180 DIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~al 200 (208)
++++++++.+++...|+|+++
T Consensus 112 ~~~~~~aa~~~~~~~ta~~~~ 132 (324)
T cd08292 112 GISDEVAAQLIAMPLSALMLL 132 (324)
T ss_pred CCCHHHhhhccccHHHHHHHH
Confidence 999999998888889998875
No 80
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.82 E-value=1.1e-19 Score=156.62 Aligned_cols=150 Identities=31% Similarity=0.515 Sum_probs=125.3
Q ss_pred ecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC--CCCCCCceeccceeEEEEEeCCCCCCCCCCCEEe
Q 028493 29 RIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP--PMAVFPRILGHEAVGVVESVGGGVEEVREGDLVL 106 (208)
Q Consensus 29 ~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~--~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~ 106 (208)
++++.++++++.+.|.|+++||+|||.++++|++|.+.+.+... ...+.|.++|+|++|+|+++|+++++|++||+|+
T Consensus 5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 84 (340)
T TIGR00692 5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS 84 (340)
T ss_pred ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence 56777799999999999999999999999999999987665421 1124567899999999999999999999999999
Q ss_pred eeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccce
Q 028493 107 PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186 (208)
Q Consensus 107 ~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~a 186 (208)
....+.|+.|..|..+..++|++.++ +|....| +|++|++++...++++|++++.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~~~~a 142 (340)
T TIGR00692 85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------CFAEYAVVPAQNIWKNPKSIPPEYA 142 (340)
T ss_pred ECCcCCCCCChhhhCcChhhCcCcce---EeecCCC-------------------cceeEEEeehHHcEECcCCCChHhh
Confidence 99999999999999999999999753 2222334 9999999999999999999998655
Q ss_pred eeccchhHHHhheee
Q 028493 187 CLLSCGVSTGNYRTL 201 (208)
Q Consensus 187 a~l~~~~~ta~~al~ 201 (208)
+++..+.++|+++.
T Consensus 143 -~~~~~~~~a~~~~~ 156 (340)
T TIGR00692 143 -TIQEPLGNAVHTVL 156 (340)
T ss_pred -hhcchHHHHHHHHH
Confidence 45667788887753
No 81
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.79 E-value=2.5e-19 Score=153.39 Aligned_cols=131 Identities=26% Similarity=0.300 Sum_probs=110.7
Q ss_pred eeEEEecC---CCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCC
Q 028493 24 RAAISRIP---GKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEE 98 (208)
Q Consensus 24 ka~~~~~~---~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~ 98 (208)
||+++.++ +++ ++..++|.|+++++||+|||+++++|++|.+.+.|..+. ..+|.++|+|++|+|+++|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~ 79 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVTL 79 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEeCCCCCC
Confidence 57788775 443 778888999999999999999999999999888776543 346789999999999999999999
Q ss_pred CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493 99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (208)
Q Consensus 99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip 178 (208)
|++||+|+.... ....| +|++|++++...++++|
T Consensus 80 ~~~Gd~V~~~~~---------------------------~~~~g-------------------~~~~~~~v~~~~~~~ip 113 (336)
T TIGR02817 80 FKPGDEVWYAGD---------------------------IDRPG-------------------SNAEFHLVDERIVGHKP 113 (336)
T ss_pred CCCCCEEEEcCC---------------------------CCCCC-------------------cccceEEEcHHHcccCC
Confidence 999999975310 01123 89999999999999999
Q ss_pred CCCCccceeeccchhHHHhheee
Q 028493 179 PDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 179 ~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++++.++++..|||+++.
T Consensus 114 ~~~~~~~aa~~~~~~~ta~~~l~ 136 (336)
T TIGR02817 114 KSLSFAEAAALPLTSITAWELLF 136 (336)
T ss_pred CCCCHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999873
No 82
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.79 E-value=3.9e-19 Score=152.70 Aligned_cols=131 Identities=28% Similarity=0.439 Sum_probs=113.9
Q ss_pred eeeEEEecCCCC---eEEEEeecCCCCC-CeEEEEEEeeeCChhhhhhhcCCCCCCCC----CCceeccceeEEEEEeCC
Q 028493 23 CRAAISRIPGKP---LVMEEIEVDPPKA-GEVRIKILCTSLCHSDVTFWRSTQPPMAV----FPRILGHEAVGVVESVGG 94 (208)
Q Consensus 23 ~ka~~~~~~~~~---l~~~~~~~p~~~~-~eVlVkV~a~~l~~sD~~~~~g~~~~~~~----~p~~~G~e~~G~Vv~vG~ 94 (208)
|||+++.+++.+ +++++.+.|+|.+ +||+||+.++++|++|.+.+.|..+.... .|.++|||++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 799999988765 8999999998887 99999999999999999998887543222 577999999999999999
Q ss_pred CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcE
Q 028493 95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHV 174 (208)
Q Consensus 95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v 174 (208)
+++.|++||+|+.... ..| +|++|+.++...+
T Consensus 81 ~v~~~~~Gd~V~~~~~-----------------------------~~g-------------------~~~~~~~v~~~~~ 112 (341)
T cd08290 81 GVKSLKPGDWVIPLRP-----------------------------GLG-------------------TWRTHAVVPADDL 112 (341)
T ss_pred CCCCCCCCCEEEecCC-----------------------------CCc-------------------cchheEeccHHHe
Confidence 9999999999986421 013 8999999999999
Q ss_pred EEcCCCCCccceeeccchhHHHhheee
Q 028493 175 VKITPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 175 ~~ip~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++|+++++++++.+++..+|||+++.
T Consensus 113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~ 139 (341)
T cd08290 113 IKVPNDVDPEQAATLSVNPCTAYRLLE 139 (341)
T ss_pred EeCCCCCCHHHHHHhhccHHHHHHHHH
Confidence 999999999999999999999999874
No 83
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.79 E-value=1.4e-18 Score=147.76 Aligned_cols=133 Identities=26% Similarity=0.306 Sum_probs=112.8
Q ss_pred eeeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
|||++++++++ ++++++.+.|.++++||+|||.++++|++|++.+.|..+....+|.++|||++|+|+++ +++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 69999999886 59999999999999999999999999999999988876543456789999999999999 567899
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+.... ..|....| +|++|++++...++++|++
T Consensus 79 ~Gd~V~~~~~------------------------~~g~~~~g-------------------~~~~~~~v~~~~~~~lp~~ 115 (325)
T cd05280 79 EGDEVLVTGY------------------------DLGMNTDG-------------------GFAEYVRVPADWVVPLPEG 115 (325)
T ss_pred CCCEEEEccc------------------------ccCCCCCc-------------------eeEEEEEEchhhEEECCCC
Confidence 9999986421 01222234 8999999999999999999
Q ss_pred CCccceeeccchhHHHhhee
Q 028493 181 IPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al 200 (208)
+++++++.+++++.|+|.++
T Consensus 116 ~~~~~aa~~~~~~~ta~~~l 135 (325)
T cd05280 116 LSLREAMILGTAGFTAALSV 135 (325)
T ss_pred CCHHHHHhhHHHHHHHHHHH
Confidence 99999999999999998876
No 84
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.77 E-value=5.6e-18 Score=144.33 Aligned_cols=151 Identities=25% Similarity=0.310 Sum_probs=121.8
Q ss_pred eeeEEEecCC--CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPG--KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~--~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
|||++++..+ ..+++++.+.|.++++|++||+.++++|++|++...|.++.....|.++|||++|+|+.+|+.+.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 7899999664 33888888888889999999999999999999988887654345678999999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+......|.. +..+.|.... +.|....| +|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~------~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~ 132 (336)
T cd08276 81 VGDRVVPTFFPNWLD------GPPTAEDEAS---ALGGPIDG-------------------VLAEYVVLPEEGLVRAPDH 132 (336)
T ss_pred CCCEEEEeccccccc------cccccccccc---ccccccCc-------------------eeeeEEEecHHHeEECCCC
Confidence 999999876655543 3334443321 12222234 8999999999999999999
Q ss_pred CCccceeeccchhHHHhheee
Q 028493 181 IPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++.+++.+.+.+.+||+++.
T Consensus 133 ~~~~~a~~~~~~~~~a~~~l~ 153 (336)
T cd08276 133 LSFEEAATLPCAGLTAWNALF 153 (336)
T ss_pred CCHHHhhhhhHHHHHHHHHHH
Confidence 999999988889999998863
No 85
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.76 E-value=3e-18 Score=147.57 Aligned_cols=132 Identities=26% Similarity=0.270 Sum_probs=112.4
Q ss_pred eeeEEEecCCCC---eEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCCC--------------CCCCCCceeccc
Q 028493 23 CRAAISRIPGKP---LVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQP--------------PMAVFPRILGHE 84 (208)
Q Consensus 23 ~ka~~~~~~~~~---l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~~--------------~~~~~p~~~G~e 84 (208)
|||+++++++++ +++++.+.|.| +++||+|||.++++|++|++...|... .....|.++|||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 689999888775 88899999999 499999999999999999998877421 013458899999
Q ss_pred eeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCccccc
Q 028493 85 AVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFT 164 (208)
Q Consensus 85 ~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~ 164 (208)
++|+|+++|++++++++||+|+..... ...| +|+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~---------------------------~~~g-------------------~~~ 114 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPP---------------------------WSQG-------------------THA 114 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCC---------------------------CCCc-------------------cce
Confidence 999999999999999999999875321 0123 899
Q ss_pred ceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493 165 EYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 165 e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
+|+.++...++++|+++++++++.+++.+.|+|+++
T Consensus 115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l 150 (350)
T cd08248 115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSAL 150 (350)
T ss_pred eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHH
Confidence 999999999999999999999999999999999886
No 86
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.76 E-value=1e-18 Score=147.25 Aligned_cols=106 Identities=23% Similarity=0.367 Sum_probs=87.7
Q ss_pred eeccceeEEEEEeCCCCC------CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCce
Q 028493 80 ILGHEAVGVVESVGGGVE------EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEV 153 (208)
Q Consensus 80 ~~G~e~~G~Vv~vG~~v~------~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~ 153 (208)
++|||++|+|+++|++|+ +|++||||+..+..+|++|.+|+.|++|+|+.... .|....+ +
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~----~------ 67 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALD----S------ 67 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCccccc----C------
Confidence 579999999999999999 89999999998888999999999999999988654 2211100 0
Q ss_pred eeeccCcccccceEEEecC-cEEEcCCCCCccceeeccchhHHHhhee
Q 028493 154 IHNVLNVSSFTEYTVVDVT-HVVKITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 154 ~~~~~~~g~~~e~~~v~~~-~v~~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
.....|+|+||+.+|.. .++++|+++++++++.++++..|+|+++
T Consensus 68 --~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al 113 (280)
T TIGR03366 68 --GWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL 113 (280)
T ss_pred --CccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH
Confidence 00012399999999987 6999999999999998888999999876
No 87
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.76 E-value=6.7e-18 Score=145.61 Aligned_cols=137 Identities=31% Similarity=0.446 Sum_probs=114.2
Q ss_pred eeeEEEecCC-CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPG-KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~-~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
|||++++.++ ..+++++++.|.++++||+|||.++++|++|++...+.+. ...|.++|||++|+|+.+|++++.+++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~~~ 78 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI--PSYPAILGCDFAGTVVEVGSGVTRFKV 78 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccc--cCCCceeeeeeeEEEEEeCCCcCcCCC
Confidence 6899999884 2388999999999999999999999999999988766541 235678999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
||+|+......|. +...+| +|++|++++...++++|+++
T Consensus 79 Gd~V~~~~~~~~~----------------------~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~ 117 (339)
T cd08249 79 GDRVAGFVHGGNP----------------------NDPRNG-------------------AFQEYVVADADLTAKIPDNI 117 (339)
T ss_pred CCEEEEEeccccC----------------------CCCCCC-------------------cccceEEechhheEECCCCC
Confidence 9999876432111 011123 99999999999999999999
Q ss_pred CccceeeccchhHHHhheeee
Q 028493 182 PLDIACLLSCGVSTGNYRTLV 202 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al~~ 202 (208)
++++++.+++.+.|||+++..
T Consensus 118 ~~~~~~~~~~~~~ta~~~l~~ 138 (339)
T cd08249 118 SFEEAATLPVGLVTAALALFQ 138 (339)
T ss_pred CHHHceecchHHHHHHHHHhc
Confidence 999999999999999998743
No 88
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.75 E-value=4.3e-18 Score=145.42 Aligned_cols=131 Identities=24% Similarity=0.278 Sum_probs=112.8
Q ss_pred eeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493 22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV 99 (208)
Q Consensus 22 ~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~ 99 (208)
+||++++.+++.+ |++++++.|.++++||+|||.++++|++|++...|.++. ..+|.++|||++|+|+.+|++|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~vG~~v~~~ 79 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKVGSGVKHI 79 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC-CCCCCccCcceEEEEEEeCCCCCCC
Confidence 5899999987764 888999999999999999999999999999988887654 2457889999999999999999999
Q ss_pred CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (208)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~ 179 (208)
++||+|+.... ..| +|++|+.++...++++|+
T Consensus 80 ~~Gd~V~~~~~-----------------------------~~g-------------------~~~~~v~v~~~~~~~lp~ 111 (327)
T PRK10754 80 KVGDRVVYAQS-----------------------------ALG-------------------AYSSVHNVPADKAAILPD 111 (327)
T ss_pred CCCCEEEECCC-----------------------------CCc-------------------ceeeEEEcCHHHceeCCC
Confidence 99999974210 013 899999999999999999
Q ss_pred CCCccceeeccchhHHHhheee
Q 028493 180 DIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~al~ 201 (208)
++++++++.++....|+|.++.
T Consensus 112 ~~~~~~~~~~~~~~~ta~~~l~ 133 (327)
T PRK10754 112 AISFEQAAASFLKGLTVYYLLR 133 (327)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888899998763
No 89
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.75 E-value=1.5e-17 Score=141.76 Aligned_cols=132 Identities=23% Similarity=0.287 Sum_probs=109.4
Q ss_pred eeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 24 ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
||++++..+.+ ++++++|.|.++++||+|||.++++|++|++.+.|.++.....|.++|||++|+|+. ++++.|++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 67888877764 789999999999999999999999999999998887643235588999999999998 56778999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
||+|+.... ..|...+| ++++|+.++...++++|+++
T Consensus 79 Gd~V~~~~~------------------------~~~~~~~g-------------------~~~~~~~~~~~~~~~iP~~~ 115 (323)
T TIGR02823 79 GDEVIVTGY------------------------GLGVSHDG-------------------GYSQYARVPADWLVPLPEGL 115 (323)
T ss_pred CCEEEEccC------------------------CCCCCCCc-------------------cceEEEEEchhheEECCCCC
Confidence 999986421 01111233 99999999999999999999
Q ss_pred CccceeeccchhHHHhhee
Q 028493 182 PLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al 200 (208)
++++++.+++.+.|+|.++
T Consensus 116 ~~~~aa~~~~~~~ta~~~~ 134 (323)
T TIGR02823 116 SLREAMALGTAGFTAALSV 134 (323)
T ss_pred CHHHhhhhhhhHHHHHHHH
Confidence 9999999888888888765
No 90
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.75 E-value=1.3e-17 Score=142.04 Aligned_cols=133 Identities=19% Similarity=0.245 Sum_probs=107.7
Q ss_pred eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
|||+++.+.+++ +.+++.+.|.++++||+||+.++++|++|.+...+.......+|.++|||++|+|+++| ++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 789999988764 78899999999999999999999999999876543211112457899999999999954 57899
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+.... ..|...+| +|++|+.++...++++|++
T Consensus 79 ~Gd~V~~~~~------------------------~~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~ 115 (326)
T cd08289 79 PGDEVIVTSY------------------------DLGVSHHG-------------------GYSEYARVPAEWVVPLPKG 115 (326)
T ss_pred CCCEEEEccc------------------------ccCCCCCC-------------------cceeEEEEcHHHeEECCCC
Confidence 9999986531 01222234 9999999999999999999
Q ss_pred CCccceeeccchhHHHhhee
Q 028493 181 IPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al 200 (208)
+++++++.+++++.|||.++
T Consensus 116 ~~~~~a~~~~~~~~ta~~~l 135 (326)
T cd08289 116 LTLKEAMILGTAGFTAALSI 135 (326)
T ss_pred CCHHHHhhhhhHHHHHHHHH
Confidence 99999999999999998775
No 91
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.74 E-value=6.4e-18 Score=139.31 Aligned_cols=127 Identities=34% Similarity=0.558 Sum_probs=109.1
Q ss_pred eEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCC
Q 028493 49 EVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICS 128 (208)
Q Consensus 49 eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~ 128 (208)
||+|||.++++|++|++.+.|..+.....|.++|||++|+|+++|++++.|++||+|+......|++|+.|+. .|.
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~ 76 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP 76 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence 6899999999999999999887652235678999999999999999999999999999999999999999997 565
Q ss_pred CCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhheee
Q 028493 129 KFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 129 ~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
.... .+....| +|++|+.++...++++|+++++++++.+++.+.|||+++.
T Consensus 77 ~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~ 127 (271)
T cd05188 77 GGGI---LGEGLDG-------------------GFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALR 127 (271)
T ss_pred CCCE---eccccCC-------------------cceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHH
Confidence 5442 2222334 9999999999999999999999999999999999998863
No 92
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.74 E-value=1.2e-17 Score=142.30 Aligned_cols=130 Identities=28% Similarity=0.372 Sum_probs=112.0
Q ss_pred eeeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493 22 RCRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV 99 (208)
Q Consensus 22 ~~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~ 99 (208)
||||+++...+.. +++++.+.|++.++||+|||.++++|+.|.....|..+.....|.++|||++|+|+++|++++.+
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 6899999987753 77778788888999999999999999999998887654333456789999999999999999999
Q ss_pred CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (208)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~ 179 (208)
++||+|+.... +| +|++|++++...++++|+
T Consensus 81 ~~Gd~V~~~~~------------------------------~g-------------------~~~~~~~v~~~~~~~ip~ 111 (334)
T PTZ00354 81 KEGDRVMALLP------------------------------GG-------------------GYAEYAVAHKGHVMHIPQ 111 (334)
T ss_pred CCCCEEEEecC------------------------------CC-------------------ceeeEEEecHHHcEeCCC
Confidence 99999975321 13 899999999999999999
Q ss_pred CCCccceeeccchhHHHhhee
Q 028493 180 DIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~al 200 (208)
+++.++++.++..+.|||+++
T Consensus 112 ~~~~~~a~~~~~~~~ta~~~l 132 (334)
T PTZ00354 112 GYTFEEAAAIPEAFLTAWQLL 132 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 999999988888999999886
No 93
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.74 E-value=2.4e-17 Score=140.83 Aligned_cols=128 Identities=27% Similarity=0.287 Sum_probs=110.2
Q ss_pred eeeeEEEecCCC----CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493 22 RCRAAISRIPGK----PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE 97 (208)
Q Consensus 22 ~~ka~~~~~~~~----~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~ 97 (208)
.|||+++++++. ++++++++.|.+.++||+|||.++++|++|++...|.+......|.++|||++|+|+.+|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~ 80 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT 80 (329)
T ss_pred CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence 389999998765 4899999999999999999999999999999988887654346788999999999999999999
Q ss_pred CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493 98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (208)
Q Consensus 98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i 177 (208)
.+++||+|+... .| +|++|+.++...++++
T Consensus 81 ~~~~Gd~V~~~~-------------------------------~g-------------------~~~s~~~v~~~~~~~i 110 (329)
T cd08250 81 DFKVGDAVATMS-------------------------------FG-------------------AFAEYQVVPARHAVPV 110 (329)
T ss_pred CCCCCCEEEEec-------------------------------Cc-------------------ceeEEEEechHHeEEC
Confidence 999999998632 13 8999999999999999
Q ss_pred CCCCCccceeeccchhHHHhheee
Q 028493 178 TPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 178 p~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
|++ ..+++.+++++.|||+++.
T Consensus 111 p~~--~~~~a~l~~~~~ta~~~l~ 132 (329)
T cd08250 111 PEL--KPEVLPLLVSGLTASIALE 132 (329)
T ss_pred CCC--cchhhhcccHHHHHHHHHH
Confidence 987 3466778889999998863
No 94
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.73 E-value=2.1e-17 Score=139.48 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=106.2
Q ss_pred eeeEEEecCCC-CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 23 CRAAISRIPGK-PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 23 ~ka~~~~~~~~-~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
||++++++.+. .+++++.+.|.++++||+||+.++++|++|.+...+. ..|.++|||++|+|+++|+++..|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g~e~~G~v~~~G~~v~~~~~ 75 (305)
T cd08270 1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER-----PDGAVPGWDAAGVVERAAADGSGPAV 75 (305)
T ss_pred CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC-----CCCCcccceeEEEEEEeCCCCCCCCC
Confidence 58899987541 1677788889999999999999999999999876521 23578999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
||+|+.... .| +|++|+.++...++++|+++
T Consensus 76 Gd~V~~~~~------------------------------~g-------------------~~~~~~~v~~~~~~~ip~~~ 106 (305)
T cd08270 76 GARVVGLGA------------------------------MG-------------------AWAELVAVPTGWLAVLPDGV 106 (305)
T ss_pred CCEEEEecC------------------------------Cc-------------------ceeeEEEEchHHeEECCCCC
Confidence 999975421 13 89999999999999999999
Q ss_pred CccceeeccchhHHHhhee
Q 028493 182 PLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al 200 (208)
++++++++++.+.|||+++
T Consensus 107 ~~~~a~~~~~~~~ta~~~~ 125 (305)
T cd08270 107 SFAQAATLPVAGVTALRAL 125 (305)
T ss_pred CHHHHHHhHhHHHHHHHHH
Confidence 9999999999999999986
No 95
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.72 E-value=3.6e-17 Score=140.82 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=92.5
Q ss_pred eEEEEeecCCC-CCCeEEEEEEeeeCChhhhhhhcCCC--CCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccC
Q 028493 35 LVMEEIEVDPP-KAGEVRIKILCTSLCHSDVTFWRSTQ--PPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQG 111 (208)
Q Consensus 35 l~~~~~~~p~~-~~~eVlVkV~a~~l~~sD~~~~~g~~--~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~ 111 (208)
+++++++.|.| +++||||||+|++||+.|........ ....++|.++|||++|+|+++|++|++|++||+|+...
T Consensus 23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-- 100 (345)
T cd08293 23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN-- 100 (345)
T ss_pred eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence 88899999987 49999999999999999864332111 11125678999999999999999999999999997420
Q ss_pred CCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccc----ee
Q 028493 112 DCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI----AC 187 (208)
Q Consensus 112 ~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~----aa 187 (208)
+ +|+||++++...++++|+++++++ ++
T Consensus 101 ------------------------------~-------------------~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a 131 (345)
T cd08293 101 ------------------------------W-------------------PWQTYAVLDGSSLEKVDPQLVDGHLSYFLG 131 (345)
T ss_pred ------------------------------C-------------------CceeEEEecHHHeEEcCccccccchhHHhh
Confidence 2 799999999999999999865432 34
Q ss_pred eccchhHHHhheee
Q 028493 188 LLSCGVSTGNYRTL 201 (208)
Q Consensus 188 ~l~~~~~ta~~al~ 201 (208)
.++..+.|||+++.
T Consensus 132 ~~~~~~~ta~~al~ 145 (345)
T cd08293 132 AVGLPGLTALIGIQ 145 (345)
T ss_pred hcCcHHHHHHHHHH
Confidence 56678899998873
No 96
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.72 E-value=5.1e-17 Score=138.59 Aligned_cols=128 Identities=27% Similarity=0.376 Sum_probs=112.0
Q ss_pred eeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 24 ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
||+++...+.+ +++++.+.|.|.++||+||+.++++|++|+..+.|.......+|.++|||++|+|+.+|+++..|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~~ 81 (331)
T cd08273 2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFEV 81 (331)
T ss_pred eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCCC
Confidence 78889887754 8888889999999999999999999999999888775443356889999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
||+|..... .| +|++|++++...++++|+++
T Consensus 82 Gd~V~~~~~------------------------------~g-------------------~~~~~~~~~~~~~~~~p~~~ 112 (331)
T cd08273 82 GDRVAALTR------------------------------VG-------------------GNAEYINLDAKYLVPVPEGV 112 (331)
T ss_pred CCEEEEeCC------------------------------Cc-------------------ceeeEEEechHHeEECCCCC
Confidence 999986421 13 89999999999999999999
Q ss_pred CccceeeccchhHHHhhee
Q 028493 182 PLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al 200 (208)
++++++.+++...|||+++
T Consensus 113 ~~~~a~~~~~~~~ta~~~l 131 (331)
T cd08273 113 DAAEAVCLVLNYVTAYQML 131 (331)
T ss_pred CHHHHHhhhhHHHHHHHHH
Confidence 9999988899999999886
No 97
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.72 E-value=6.3e-17 Score=137.76 Aligned_cols=133 Identities=14% Similarity=0.154 Sum_probs=109.6
Q ss_pred eeeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
|||+++++++. .+++++.+.|+++++||+|||.++++|++|.+.+.|.+.....+|.++|||++|+|++ +++++++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 78999998775 3899999999999999999999999999999988876532234577899999999999 7778899
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+.... +.+...+| +|++|+.++...++++|++
T Consensus 79 ~Gd~V~~~~~------------------------~~~~~~~g-------------------~~~~~~~v~~~~~~~lp~~ 115 (324)
T cd08288 79 PGDRVVLTGW------------------------GVGERHWG-------------------GYAQRARVKADWLVPLPEG 115 (324)
T ss_pred CCCEEEECCc------------------------cCCCCCCC-------------------cceeEEEEchHHeeeCCCC
Confidence 9999986421 01111123 8999999999999999999
Q ss_pred CCccceeeccchhHHHhhee
Q 028493 181 IPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al 200 (208)
+++++++.+++.++|+|.++
T Consensus 116 ~~~~~~~~~~~~~~ta~~~~ 135 (324)
T cd08288 116 LSARQAMAIGTAGFTAMLCV 135 (324)
T ss_pred CCHHHHhhhhhHHHHHHHHH
Confidence 99999998888888887664
No 98
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.72 E-value=6.6e-17 Score=137.36 Aligned_cols=130 Identities=26% Similarity=0.342 Sum_probs=108.1
Q ss_pred eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCCC
Q 028493 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEE 98 (208)
Q Consensus 23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~~ 98 (208)
|||+++++++.+ +++.+.+.|.+.++||+||+.++++|++|++...|..+. ....|.++|||++|+|+.+|+++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 689999876543 677777777788999999999999999999988876532 2345788999999999999999999
Q ss_pred CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493 99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (208)
Q Consensus 99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip 178 (208)
+++||+|+.... ...| +|++|+.++...++++|
T Consensus 81 ~~~Gd~V~~~~~----------------------------~~~g-------------------~~~~~~~v~~~~~~~lp 113 (324)
T cd08244 81 AWLGRRVVAHTG----------------------------RAGG-------------------GYAELAVADVDSLHPVP 113 (324)
T ss_pred CCCCCEEEEccC----------------------------CCCc-------------------eeeEEEEEchHHeEeCC
Confidence 999999986421 0123 89999999999999999
Q ss_pred CCCCccceeeccchhHHHhhe
Q 028493 179 PDIPLDIACLLSCGVSTGNYR 199 (208)
Q Consensus 179 ~~~~~~~aa~l~~~~~ta~~a 199 (208)
+++++++++.+++.+.|||..
T Consensus 114 ~~~~~~~a~~~~~~~~ta~~~ 134 (324)
T cd08244 114 DGLDLEAAVAVVHDGRTALGL 134 (324)
T ss_pred CCCCHHHHhhhcchHHHHHHH
Confidence 999999998888888998643
No 99
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.71 E-value=4.4e-17 Score=139.42 Aligned_cols=132 Identities=26% Similarity=0.264 Sum_probs=110.5
Q ss_pred eeeEEEecCCCC-----eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC
Q 028493 23 CRAAISRIPGKP-----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE 97 (208)
Q Consensus 23 ~ka~~~~~~~~~-----l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~ 97 (208)
|||+++.++++. ++.++++.|.+.++||+||+.++++|++|++.+.+..+. .+.|.++|||++|+|+.+|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~ 79 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAVGSEVT 79 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCC-CCCCcccccceEEEEEEcCCCCC
Confidence 589999988763 566677888889999999999999999999988776542 34677899999999999999999
Q ss_pred CCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc
Q 028493 98 EVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI 177 (208)
Q Consensus 98 ~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i 177 (208)
.|++||+|+.... ....| +|++|+.++...++++
T Consensus 80 ~~~~Gd~V~~~~~---------------------------~~~~g-------------------~~~~~~~v~~~~~~~i 113 (336)
T cd08252 80 LFKVGDEVYYAGD---------------------------ITRPG-------------------SNAEYQLVDERIVGHK 113 (336)
T ss_pred CCCCCCEEEEcCC---------------------------CCCCc-------------------cceEEEEEchHHeeeC
Confidence 9999999975310 00123 8999999999999999
Q ss_pred CCCCCccceeeccchhHHHhheee
Q 028493 178 TPDIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 178 p~~~~~~~aa~l~~~~~ta~~al~ 201 (208)
|++++.++++.+++.+.|||+++.
T Consensus 114 p~~~~~~~~~~~~~~~~ta~~~l~ 137 (336)
T cd08252 114 PKSLSFAEAAALPLTSLTAWEALF 137 (336)
T ss_pred CCCCCHHHhhhhhhHHHHHHHHHH
Confidence 999999999989999999998863
No 100
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.71 E-value=7.6e-17 Score=139.38 Aligned_cols=133 Identities=23% Similarity=0.343 Sum_probs=108.6
Q ss_pred eeEEEecCCCCeEEEEeecCCC---CCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCC-CC
Q 028493 24 RAAISRIPGKPLVMEEIEVDPP---KAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVE-EV 99 (208)
Q Consensus 24 ka~~~~~~~~~l~~~~~~~p~~---~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~-~~ 99 (208)
|++++.++++++++++++.|.| +++||+||+.++++|++|+..+.+........|.++|||++|+|+++|++++ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~ 81 (352)
T cd08247 2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW 81 (352)
T ss_pred ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence 6899999888888888877766 8999999999999999999877543221112377899999999999999998 89
Q ss_pred CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC----cEE
Q 028493 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT----HVV 175 (208)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~----~v~ 175 (208)
++||+|+......| ...| +|++|++++.. .++
T Consensus 82 ~~Gd~V~~~~~~~~-------------------------~~~g-------------------~~~~~~~v~~~~~~~~~~ 117 (352)
T cd08247 82 KVGDEVCGIYPHPY-------------------------GGQG-------------------TLSQYLLVDPKKDKKSIT 117 (352)
T ss_pred CCCCEEEEeecCCC-------------------------CCCc-------------------eeeEEEEEccccccceeE
Confidence 99999986532110 0123 89999999987 789
Q ss_pred EcCCCCCccceeeccchhHHHhhee
Q 028493 176 KITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 176 ~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
++|+++++++++.++++..|||+++
T Consensus 118 ~lP~~l~~~~aa~~~~~~~ta~~~l 142 (352)
T cd08247 118 RKPENISLEEAAAWPLVLGTAYQIL 142 (352)
T ss_pred ECCCCCCHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999886
No 101
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.71 E-value=1.2e-16 Score=135.32 Aligned_cols=131 Identities=33% Similarity=0.445 Sum_probs=112.3
Q ss_pred eeeEEEecCC--CCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPG--KPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~--~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
|||+++.+++ +.+++++.+.|+++++||+|||.++++|++|++...+.... ...|.++|||++|+|+.+|++++.++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~~~ 79 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAVGAKVTGWK 79 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCcccccceEEEEEEeCCCCCcCC
Confidence 7999999988 35999999999999999999999999999999887776432 23367899999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|++.... ...| +|++|+.++...++++|++
T Consensus 80 ~Gd~V~~~~~~---------------------------~~~~-------------------~~~s~~~~~~~~~~~ip~~ 113 (325)
T cd08271 80 VGDRVAYHASL---------------------------ARGG-------------------SFAEYTVVDARAVLPLPDS 113 (325)
T ss_pred CCCEEEeccCC---------------------------CCCc-------------------cceeEEEeCHHHeEECCCC
Confidence 99999864310 0123 8999999999999999999
Q ss_pred CCccceeeccchhHHHhhee
Q 028493 181 IPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al 200 (208)
++..+++.+.+...++|+++
T Consensus 114 ~~~~~~a~~~~~~~~a~~~~ 133 (325)
T cd08271 114 LSFEEAAALPCAGLTAYQAL 133 (325)
T ss_pred CCHHHHHhhhhhHHHHHHHH
Confidence 99999888888999999886
No 102
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.70 E-value=1e-16 Score=134.80 Aligned_cols=129 Identities=29% Similarity=0.421 Sum_probs=110.6
Q ss_pred eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
||++++.+.+.+ +++++.+.|.+.++||+||+.++++|++|++...+.++....+|.++|||++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 699999876543 778888877788999999999999999999988776544345678999999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+.... +| +|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~g-------------------~~~~~~~~~~~~~~~~p~~ 111 (323)
T cd05276 81 VGDRVCALLA------------------------------GG-------------------GYAEYVVVPAGQLLPVPEG 111 (323)
T ss_pred CCCEEEEecC------------------------------CC-------------------ceeEEEEcCHHHhccCCCC
Confidence 9999986421 13 8999999999999999999
Q ss_pred CCccceeeccchhHHHhhee
Q 028493 181 IPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al 200 (208)
+++.+++.++....++|+++
T Consensus 112 ~~~~~~~~l~~~~~~a~~~~ 131 (323)
T cd05276 112 LSLVEAAALPEVFFTAWQNL 131 (323)
T ss_pred CCHHHHhhchhHHHHHHHHH
Confidence 99999988888999999875
No 103
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.70 E-value=1.5e-16 Score=134.08 Aligned_cols=135 Identities=26% Similarity=0.412 Sum_probs=112.9
Q ss_pred eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
||+++++.++.+ +++.+.+.|.+.++||+||+.++++|++|++...|........|.++|||++|+|+.+|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 588888876543 888888888899999999999999999999988776544345788999999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+..... .+ ...| ++++|+.++...++++|++
T Consensus 81 ~Gd~v~~~~~~------------------------~~-~~~g-------------------~~~~~~~~~~~~~~~ip~~ 116 (325)
T cd08253 81 VGDRVWLTNLG------------------------WG-RRQG-------------------TAAEYVVVPADQLVPLPDG 116 (325)
T ss_pred CCCEEEEeccc------------------------cC-CCCc-------------------ceeeEEEecHHHcEeCCCC
Confidence 99999875320 00 0123 8999999999999999999
Q ss_pred CCccceeeccchhHHHhheee
Q 028493 181 IPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++.+++...+||+++.
T Consensus 117 ~~~~~aa~~~~~~~~a~~~l~ 137 (325)
T cd08253 117 VSFEQGAALGIPALTAYRALF 137 (325)
T ss_pred CCHHHHhhhhhHHHHHHHHHH
Confidence 999999999889999998763
No 104
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.70 E-value=6.4e-17 Score=139.34 Aligned_cols=128 Identities=23% Similarity=0.276 Sum_probs=101.8
Q ss_pred eeeeEEEecCCC-CeEEEEeec----CCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccce--eEEEEEeCC
Q 028493 22 RCRAAISRIPGK-PLVMEEIEV----DPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEA--VGVVESVGG 94 (208)
Q Consensus 22 ~~ka~~~~~~~~-~l~~~~~~~----p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~--~G~Vv~vG~ 94 (208)
.+|++....+.. .|++++.+. |+|+++||||||++++||+.|.+...|.+......|.++|+++ .|++..+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~~ 86 (338)
T cd08295 7 ILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVDS 86 (338)
T ss_pred EEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEec
Confidence 366777655543 289988877 7899999999999999999999988885432124577889865 455555889
Q ss_pred CCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec-Cc
Q 028493 95 GVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-TH 173 (208)
Q Consensus 95 ~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~-~~ 173 (208)
++++|++||+|+.. | +|+||++++. ..
T Consensus 87 ~v~~~~vGd~V~~~---------------------------------g-------------------~~aey~~v~~~~~ 114 (338)
T cd08295 87 GNPDFKVGDLVWGF---------------------------------T-------------------GWEEYSLIPRGQD 114 (338)
T ss_pred CCCCCCCCCEEEec---------------------------------C-------------------CceeEEEecchhc
Confidence 99999999999632 2 8999999999 78
Q ss_pred EEEcC-CCCCcc-ceeeccchhHHHhheee
Q 028493 174 VVKIT-PDIPLD-IACLLSCGVSTGNYRTL 201 (208)
Q Consensus 174 v~~ip-~~~~~~-~aa~l~~~~~ta~~al~ 201 (208)
++++| ++++++ +++++++++.|||+++.
T Consensus 115 ~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~ 144 (338)
T cd08295 115 LRKIDHTDVPLSYYLGLLGMPGLTAYAGFY 144 (338)
T ss_pred eeecCCCCCCHHHHHHhcccHHHHHHHHHH
Confidence 99995 678876 78888999999999974
No 105
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.70 E-value=1.6e-16 Score=134.37 Aligned_cols=133 Identities=31% Similarity=0.418 Sum_probs=109.3
Q ss_pred eeeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
||++++...+. .+++.+.+.|.++++||+||+.++++|++|++...+..+. ...|.++|||++|+|+++|. ..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~--~~~~ 77 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEAPG--GTFT 77 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEecC--CCCC
Confidence 68899987664 2677788887889999999999999999999988876543 35578999999999999995 5799
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|++.... .+....| +|++|+.++...++++|++
T Consensus 78 ~Gd~V~~~~~~------------------------~~~~~~g-------------------~~~~~~~~~~~~~~~ip~~ 114 (320)
T cd08243 78 PGQRVATAMGG------------------------MGRTFDG-------------------SYAEYTLVPNEQVYAIDSD 114 (320)
T ss_pred CCCEEEEecCC------------------------CCCCCCc-------------------ccceEEEcCHHHcEeCCCC
Confidence 99999875320 1111223 8999999999999999999
Q ss_pred CCccceeeccchhHHHhheee
Q 028493 181 IPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++++++.+++++.|||+++.
T Consensus 115 ~~~~~aa~~~~~~~ta~~~l~ 135 (320)
T cd08243 115 LSWAELAALPETYYTAWGSLF 135 (320)
T ss_pred CCHHHHHhcchHHHHHHHHHH
Confidence 999999999999999998863
No 106
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.69 E-value=1.8e-16 Score=134.01 Aligned_cols=134 Identities=26% Similarity=0.355 Sum_probs=111.6
Q ss_pred eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
|||+++.+++.+ +++++.+.|++.++||+|||.++++|++|.+...+........|.++|||++|+|+.+|++++.|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 689999887764 788888888889999999999999999999988776543334578899999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+..... .+ ... |+|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~~------------------------~~-~~~-------------------g~~~~~~~v~~~~~~~~p~~ 116 (326)
T cd08272 81 VGDEVYGCAGG------------------------LG-GLQ-------------------GSLAEYAVVDARLLALKPAN 116 (326)
T ss_pred CCCEEEEccCC------------------------cC-CCC-------------------CceeEEEEecHHHcccCCCC
Confidence 99999864210 00 012 28999999999999999999
Q ss_pred CCccceeeccchhHHHhhee
Q 028493 181 IPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al 200 (208)
+++..++.++....+||+++
T Consensus 117 ~~~~~~~~~~~~~~~a~~~l 136 (326)
T cd08272 117 LSMREAAALPLVGITAWEGL 136 (326)
T ss_pred CCHHHHHHhHHHHHHHHHHH
Confidence 99999888888899999875
No 107
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.67 E-value=4.8e-16 Score=131.29 Aligned_cols=134 Identities=33% Similarity=0.410 Sum_probs=110.7
Q ss_pred eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
||++.+...+.+ +++++.+.|.+++++|+|+|.++++|+.|.+...+........|.++|||++|+|+.+|+++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 688888875542 777788878889999999999999999999888776544334578899999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+..... +....| ++++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~~-------------------------~~~~~g-------------------~~~~~~~~~~~~~~~~p~~ 116 (328)
T cd08268 81 VGDRVSVIPAA-------------------------DLGQYG-------------------TYAEYALVPAAAVVKLPDG 116 (328)
T ss_pred CCCEEEecccc-------------------------ccCCCc-------------------cceEEEEechHhcEeCCCC
Confidence 99999875321 011123 8999999999999999999
Q ss_pred CCccceeeccchhHHHhhee
Q 028493 181 IPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al 200 (208)
++.++++.+++...++|.++
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~ 136 (328)
T cd08268 117 LSFVEAAALWMQYLTAYGAL 136 (328)
T ss_pred CCHHHHHHhhhHHHHHHHHH
Confidence 99989888888999999876
No 108
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.66 E-value=5.3e-16 Score=132.34 Aligned_cols=121 Identities=22% Similarity=0.246 Sum_probs=96.7
Q ss_pred eeeeEEEecC--CCC----eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCC
Q 028493 22 RCRAAISRIP--GKP----LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGG 95 (208)
Q Consensus 22 ~~ka~~~~~~--~~~----l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~ 95 (208)
.||+|++.+. +.+ |++++.+.|+|+++||+|||++++||+.|.+...+ . .+.|.++|+|++|+|++ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~--~~~p~v~G~e~~G~V~~---~ 74 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L--NEGDTMIGTQVAKVIES---K 74 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--C--CCCCcEecceEEEEEec---C
Confidence 4899999883 332 88899999999999999999999999987653221 1 14578999999999985 4
Q ss_pred CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecC---
Q 028493 96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVT--- 172 (208)
Q Consensus 96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~--- 172 (208)
++.|++||+|+.. + +|++|..++..
T Consensus 75 ~~~~~~Gd~V~~~---------------------------------~-------------------~~~~~~~~~~~~~~ 102 (329)
T cd08294 75 NSKFPVGTIVVAS---------------------------------F-------------------GWRTHTVSDGKDQP 102 (329)
T ss_pred CCCCCCCCEEEee---------------------------------C-------------------CeeeEEEECCcccc
Confidence 5689999999742 1 68999999999
Q ss_pred cEEEcCCCCCc-----cceeeccchhHHHhheee
Q 028493 173 HVVKITPDIPL-----DIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 173 ~v~~ip~~~~~-----~~aa~l~~~~~ta~~al~ 201 (208)
.++++|+++++ ..++++++.++|||+++.
T Consensus 103 ~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~ 136 (329)
T cd08294 103 DLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLL 136 (329)
T ss_pred ceEECCccccccCChHHHHHhcccHHHHHHHHHH
Confidence 99999999872 223457788999999874
No 109
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.64 E-value=1.2e-15 Score=129.54 Aligned_cols=117 Identities=27% Similarity=0.439 Sum_probs=101.7
Q ss_pred eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCC
Q 028493 35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCG 114 (208)
Q Consensus 35 l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~ 114 (208)
+++++.+.|+++++||+|||.++++|+.|.+.+.+.......+|.++|||++|+|+.+|++++++++||+|+....
T Consensus 14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---- 89 (323)
T cd05282 14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG---- 89 (323)
T ss_pred EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence 6667888888999999999999999999999887765443356789999999999999999999999999986431
Q ss_pred CCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhH
Q 028493 115 ECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVS 194 (208)
Q Consensus 115 ~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ 194 (208)
.| +|++|+.++...++++|+++++++++.+++...
T Consensus 90 --------------------------~g-------------------~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ 124 (323)
T cd05282 90 --------------------------EG-------------------TWQEYVVAPADDLIPVPDSISDEQAAMLYINPL 124 (323)
T ss_pred --------------------------CC-------------------cceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence 13 899999999999999999999999888888889
Q ss_pred HHhhee
Q 028493 195 TGNYRT 200 (208)
Q Consensus 195 ta~~al 200 (208)
|||+++
T Consensus 125 ta~~~~ 130 (323)
T cd05282 125 TAWLML 130 (323)
T ss_pred HHHHHH
Confidence 999886
No 110
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.63 E-value=1.6e-15 Score=127.14 Aligned_cols=132 Identities=25% Similarity=0.348 Sum_probs=108.9
Q ss_pred eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCC--CCCCCCceeccceeEEEEEeCCCCCC
Q 028493 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQP--PMAVFPRILGHEAVGVVESVGGGVEE 98 (208)
Q Consensus 23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~--~~~~~p~~~G~e~~G~Vv~vG~~v~~ 98 (208)
||+++++.++.. +++++.+.|.++++||+|||.++++|++|++.+.|... .....|.++|||++|+|+.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 688999877653 56677777788999999999999999999998877642 11345789999999999999999999
Q ss_pred CCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcC
Q 028493 99 VREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKIT 178 (208)
Q Consensus 99 ~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip 178 (208)
+++||+|+..... ...| +|++|+.++...++++|
T Consensus 81 ~~~G~~V~~~~~~---------------------------~~~g-------------------~~~~~~~~~~~~~~~~p 114 (309)
T cd05289 81 FKVGDEVFGMTPF---------------------------TRGG-------------------AYAEYVVVPADELALKP 114 (309)
T ss_pred CCCCCEEEEccCC---------------------------CCCC-------------------cceeEEEecHHHhccCC
Confidence 9999999864310 0123 89999999999999999
Q ss_pred CCCCccceeeccchhHHHhhee
Q 028493 179 PDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 179 ~~~~~~~aa~l~~~~~ta~~al 200 (208)
+++++..++.+++...++|+++
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~ 136 (309)
T cd05289 115 ANLSFEEAAALPLAGLTAWQAL 136 (309)
T ss_pred CCCCHHHHHhhhHHHHHHHHHH
Confidence 9999988888888888998875
No 111
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.63 E-value=1.6e-15 Score=129.89 Aligned_cols=108 Identities=21% Similarity=0.285 Sum_probs=89.5
Q ss_pred eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCC
Q 028493 35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCG 114 (208)
Q Consensus 35 l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~ 114 (208)
|++++++.|.|++|||||||.++++|+.+.. |.+.. ...|.++|.|++|+|+++|+ .|++||+|+..
T Consensus 19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~-~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~------ 85 (325)
T TIGR02825 19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRL-KEGDTMMGQQVARVVESKNV---ALPKGTIVLAS------ 85 (325)
T ss_pred eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcC-CCCCcEecceEEEEEEeCCC---CCCCCCEEEEe------
Confidence 8899999999999999999999999997654 33322 23468999999999999874 59999999752
Q ss_pred CCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEc----CCCCCccce-eec
Q 028493 115 ECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKI----TPDIPLDIA-CLL 189 (208)
Q Consensus 115 ~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~i----p~~~~~~~a-a~l 189 (208)
+ +|++|++++...+.++ |++++++++ +++
T Consensus 86 ---------------------------~-------------------~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l 119 (325)
T TIGR02825 86 ---------------------------P-------------------GWTSHSISDGKDLEKLLTEWPDTLPLSLALGTV 119 (325)
T ss_pred ---------------------------c-------------------CceeeEEechhheEEccccccCCCCHHHHHHhc
Confidence 1 6889999998887777 889998887 678
Q ss_pred cchhHHHhheee
Q 028493 190 SCGVSTGNYRTL 201 (208)
Q Consensus 190 ~~~~~ta~~al~ 201 (208)
++.+.|||+++.
T Consensus 120 ~~~~~TA~~~l~ 131 (325)
T TIGR02825 120 GMPGLTAYFGLL 131 (325)
T ss_pred ccHHHHHHHHHH
Confidence 889999999873
No 112
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.63 E-value=2.8e-15 Score=130.18 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=97.3
Q ss_pred eeeeeEEEecCCC------CeEEEE---eecCC-CCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceecc--ceeEE
Q 028493 21 IRCRAAISRIPGK------PLVMEE---IEVDP-PKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGH--EAVGV 88 (208)
Q Consensus 21 ~~~ka~~~~~~~~------~l~~~~---~~~p~-~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~--e~~G~ 88 (208)
.+.|.+++...-+ .|++++ ++.|. +++|||||||.++++|+.|.....+.... ...|.++|+ |++|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~-~~~p~~~G~~~~~~G~ 85 (348)
T PLN03154 7 VENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDS-YLPPFVPGQRIEGFGV 85 (348)
T ss_pred ccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCC-CCCCcCCCCeeEeeEE
Confidence 3457788854321 288876 35553 47999999999999999987654332221 235788998 88999
Q ss_pred EEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEE
Q 028493 89 VESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTV 168 (208)
Q Consensus 89 Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~ 168 (208)
|..+|+++++|++||+|+.. | +|+||.+
T Consensus 86 v~~vg~~v~~~~~Gd~V~~~---------------------------------~-------------------~~aey~~ 113 (348)
T PLN03154 86 SKVVDSDDPNFKPGDLISGI---------------------------------T-------------------GWEEYSL 113 (348)
T ss_pred EEEEecCCCCCCCCCEEEec---------------------------------C-------------------CcEEEEE
Confidence 99999999999999999642 2 7999999
Q ss_pred EecCc--EE--EcCCCCCcc-ceeeccchhHHHhheee
Q 028493 169 VDVTH--VV--KITPDIPLD-IACLLSCGVSTGNYRTL 201 (208)
Q Consensus 169 v~~~~--v~--~ip~~~~~~-~aa~l~~~~~ta~~al~ 201 (208)
++... ++ ++|++++++ +++.+++++.|||+++.
T Consensus 114 v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~ 151 (348)
T PLN03154 114 IRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFY 151 (348)
T ss_pred EeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHH
Confidence 98743 54 458999986 67788999999999874
No 113
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.62 E-value=4.2e-15 Score=126.49 Aligned_cols=128 Identities=25% Similarity=0.375 Sum_probs=107.4
Q ss_pred eeEEEecCCC--CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 24 RAAISRIPGK--PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 24 ka~~~~~~~~--~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
|++++...+. .+++++.+.|++.++||+||+.++++|++|.+.+.|.+......|.++|||++|+|+.+|++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 80 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV 80 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence 4666665553 37777877788899999999999999999999888765432345778999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
||+|+.... .| +|++|..++...++++|+++
T Consensus 81 G~~V~~~~~------------------------------~~-------------------~~~~~~~~~~~~~~~ip~~~ 111 (337)
T cd08275 81 GDRVMGLTR------------------------------FG-------------------GYAEVVNVPADQVFPLPDGM 111 (337)
T ss_pred CCEEEEecC------------------------------CC-------------------eeeeEEEecHHHeEECCCCC
Confidence 999986421 12 89999999999999999999
Q ss_pred CccceeeccchhHHHhhee
Q 028493 182 PLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al 200 (208)
++++++.+.+...++|+++
T Consensus 112 ~~~~~~~~~~~~~~a~~~~ 130 (337)
T cd08275 112 SFEEAAAFPVNYLTAYYAL 130 (337)
T ss_pred CHHHHhhhhHHHHHHHHHH
Confidence 9999888888999999886
No 114
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.61 E-value=6.1e-15 Score=124.42 Aligned_cols=129 Identities=30% Similarity=0.404 Sum_probs=108.0
Q ss_pred eeeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCC
Q 028493 23 CRAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVR 100 (208)
Q Consensus 23 ~ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~ 100 (208)
|||+.+...+.+ +++++.+.+.++++||+|||.++++|++|.+...+.+.....+|.++|||++|+|+.+|+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 578888775544 667777777788999999999999999999888776543234578999999999999999999999
Q ss_pred CCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCC
Q 028493 101 EGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPD 180 (208)
Q Consensus 101 vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~ 180 (208)
+||+|+.... +| +|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~~-------------------~~~~~~~~~~~~~~~ip~~ 111 (325)
T TIGR02824 81 VGDRVCALVA------------------------------GG-------------------GYAEYVAVPAGQVLPVPEG 111 (325)
T ss_pred CCCEEEEccC------------------------------CC-------------------cceeEEEecHHHcEeCCCC
Confidence 9999986321 13 8999999999999999999
Q ss_pred CCccceeeccchhHHHhhee
Q 028493 181 IPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 181 ~~~~~aa~l~~~~~ta~~al 200 (208)
+++.+++.++....|+|.++
T Consensus 112 ~~~~~~~~~~~~~~ta~~~~ 131 (325)
T TIGR02824 112 LSLVEAAALPETFFTVWSNL 131 (325)
T ss_pred CCHHHHHhhhHHHHHHHHHH
Confidence 99988888888999999875
No 115
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.59 E-value=1e-14 Score=122.49 Aligned_cols=127 Identities=31% Similarity=0.424 Sum_probs=105.7
Q ss_pred eeEEEecCCCC--eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCC
Q 028493 24 RAAISRIPGKP--LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVRE 101 (208)
Q Consensus 24 ka~~~~~~~~~--l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~v 101 (208)
||+.+..++.+ +.+.+.+.+.+.++||+|||.++++|++|++...+..+. .+|.++|||++|+|+.+|++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~ 78 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAVGPGVTGFKV 78 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEECCCCCCCCC
Confidence 46666655543 666677777788999999999999999999988876544 45778999999999999999999999
Q ss_pred CCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC
Q 028493 102 GDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI 181 (208)
Q Consensus 102 Gd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~ 181 (208)
||+|+... ..| +|++|+.++.+.++++|+++
T Consensus 79 G~~V~~~~------------------------------~~g-------------------~~~~~~~~~~~~~~~~p~~~ 109 (320)
T cd05286 79 GDRVAYAG------------------------------PPG-------------------AYAEYRVVPASRLVKLPDGI 109 (320)
T ss_pred CCEEEEec------------------------------CCC-------------------ceeEEEEecHHHceeCCCCC
Confidence 99998531 013 89999999999999999999
Q ss_pred CccceeeccchhHHHhheee
Q 028493 182 PLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 182 ~~~~aa~l~~~~~ta~~al~ 201 (208)
+..+++.+.....++|+++.
T Consensus 110 ~~~~~~~~~~~~~~a~~~l~ 129 (320)
T cd05286 110 SDETAAALLLQGLTAHYLLR 129 (320)
T ss_pred CHHHHhhccchHHHHHHHHH
Confidence 99998888888899988763
No 116
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.59 E-value=7.8e-15 Score=123.98 Aligned_cols=119 Identities=25% Similarity=0.361 Sum_probs=95.6
Q ss_pred ecCCCCeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhh-cCCCCCC-CCCCceeccceeEEEEEeCCCCCCCCCCCEEe
Q 028493 29 RIPGKPLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFW-RSTQPPM-AVFPRILGHEAVGVVESVGGGVEEVREGDLVL 106 (208)
Q Consensus 29 ~~~~~~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~-~g~~~~~-~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~ 106 (208)
++++. |++++++.|++.++||+||+.++++|++|.+.+ .|..+.. ...|.++|+|++|+|+.+|++++.+++||+|+
T Consensus 2 ~~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 80 (312)
T cd08269 2 TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA 80 (312)
T ss_pred CCCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence 34454 999999999999999999999999999999887 6654321 12477899999999999999999999999998
Q ss_pred eeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccce
Q 028493 107 PVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIA 186 (208)
Q Consensus 107 ~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~a 186 (208)
... .| +|++|+.++.+.++++|+++ ..+
T Consensus 81 ~~~-------------------------------~g-------------------~~~~~~~v~~~~~~~lP~~~--~~~ 108 (312)
T cd08269 81 GLS-------------------------------GG-------------------AFAEYDLADADHAVPLPSLL--DGQ 108 (312)
T ss_pred Eec-------------------------------CC-------------------cceeeEEEchhheEECCCch--hhh
Confidence 642 13 89999999999999999988 222
Q ss_pred eeccchhHHHhhee
Q 028493 187 CLLSCGVSTGNYRT 200 (208)
Q Consensus 187 a~l~~~~~ta~~al 200 (208)
+....+++++|+++
T Consensus 109 ~~~~~~~~~a~~~~ 122 (312)
T cd08269 109 AFPGEPLGCALNVF 122 (312)
T ss_pred HHhhhhHHHHHHHH
Confidence 22235677888765
No 117
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.58 E-value=7.8e-15 Score=122.73 Aligned_cols=112 Identities=31% Similarity=0.397 Sum_probs=97.2
Q ss_pred cCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccC
Q 028493 42 VDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKS 121 (208)
Q Consensus 42 ~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~ 121 (208)
.|++.++||+||+.++++|++|++...+.++....+|.++|+|++|+|+++|++++++++||+|+....
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----------- 70 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG----------- 70 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC-----------
Confidence 577889999999999999999999888765443456889999999999999999999999999986431
Q ss_pred CCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493 122 PKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 122 g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
...| +|++|+.++...++++|++++.++++.++....|||+++
T Consensus 71 -----------------~~~g-------------------~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l 113 (303)
T cd08251 71 -----------------ESMG-------------------GHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF 113 (303)
T ss_pred -----------------CCCc-------------------ceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH
Confidence 0123 899999999999999999999999999988999999886
No 118
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.56 E-value=1.4e-14 Score=122.36 Aligned_cols=119 Identities=26% Similarity=0.349 Sum_probs=100.8
Q ss_pred EEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCC
Q 028493 36 VMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDC 113 (208)
Q Consensus 36 ~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c 113 (208)
++++.+.|.++++||+|++.++++|++|.+.+.|.... ....|..+|||++|+|+++|+++.++++||+|+.....
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~-- 92 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP-- 92 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence 77788889999999999999999999999988776521 12346789999999999999999999999999865320
Q ss_pred CCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchh
Q 028493 114 GECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGV 193 (208)
Q Consensus 114 ~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~ 193 (208)
...| +|++|..++...++++|+++++++++.+++.+
T Consensus 93 -------------------------~~~g-------------------~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 128 (319)
T cd08267 93 -------------------------KGGG-------------------ALAEYVVAPESGLAKKPEGVSFEEAAALPVAG 128 (319)
T ss_pred -------------------------CCCc-------------------eeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence 0113 89999999999999999999999988888899
Q ss_pred HHHhhee
Q 028493 194 STGNYRT 200 (208)
Q Consensus 194 ~ta~~al 200 (208)
.+||+++
T Consensus 129 ~~a~~~~ 135 (319)
T cd08267 129 LTALQAL 135 (319)
T ss_pred HHHHHHH
Confidence 9999886
No 119
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.55 E-value=4e-14 Score=119.12 Aligned_cols=129 Identities=29% Similarity=0.455 Sum_probs=105.2
Q ss_pred eeeEEEecCCCC--eEEEEeecCCCC-CCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCC
Q 028493 23 CRAAISRIPGKP--LVMEEIEVDPPK-AGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEV 99 (208)
Q Consensus 23 ~ka~~~~~~~~~--l~~~~~~~p~~~-~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~ 99 (208)
|||+++...+.+ +++.+.+ |.+. ++|++||+.++++|++|++.+.|.+......|.++|||++|+|+.+|++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 688888754433 7777777 6666 49999999999999999998877654323446789999999999999999999
Q ss_pred CCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCC
Q 028493 100 REGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITP 179 (208)
Q Consensus 100 ~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~ 179 (208)
++||+|+.... .| ++++|+.++...++++|+
T Consensus 80 ~~G~~V~~~~~------------------------------~~-------------------~~~~~~~~~~~~~~~ip~ 110 (323)
T cd08241 80 KVGDRVVALTG------------------------------QG-------------------GFAEEVVVPAAAVFPLPD 110 (323)
T ss_pred CCCCEEEEecC------------------------------Cc-------------------eeEEEEEcCHHHceeCCC
Confidence 99999986420 13 899999999999999999
Q ss_pred CCCccceeeccchhHHHhheee
Q 028493 180 DIPLDIACLLSCGVSTGNYRTL 201 (208)
Q Consensus 180 ~~~~~~aa~l~~~~~ta~~al~ 201 (208)
+++..+++.+.....+||.++.
T Consensus 111 ~~~~~~~~~~~~~~~~a~~~~~ 132 (323)
T cd08241 111 GLSFEEAAALPVTYGTAYHALV 132 (323)
T ss_pred CCCHHHHhhhhhHHHHHHHHHH
Confidence 9998888878888888888753
No 120
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.49 E-value=1.5e-13 Score=117.13 Aligned_cols=124 Identities=20% Similarity=0.197 Sum_probs=96.2
Q ss_pred eeEEEecCCC------CeEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCC--CCCCCceeccceeEEEEEeCCC
Q 028493 24 RAAISRIPGK------PLVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPP--MAVFPRILGHEAVGVVESVGGG 95 (208)
Q Consensus 24 ka~~~~~~~~------~l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~--~~~~p~~~G~e~~G~Vv~vG~~ 95 (208)
|+|.+....+ .+++++++.|++.++||+||+.++++|+.|.....+.... +...+.++|+|++|+|+++|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~ 82 (329)
T cd05288 3 RQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP 82 (329)
T ss_pred cEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC
Confidence 5666654331 2899999999999999999999999999886555543211 1123467899999999999964
Q ss_pred CCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEec-CcE
Q 028493 96 VEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDV-THV 174 (208)
Q Consensus 96 v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~-~~v 174 (208)
.+++||+|+.. + +|++|+.++. ..+
T Consensus 83 --~~~~Gd~V~~~---------------------------------~-------------------~~~~~~~v~~~~~~ 108 (329)
T cd05288 83 --DFKVGDLVSGF---------------------------------L-------------------GWQEYAVVDGASGL 108 (329)
T ss_pred --CCCCCCEEecc---------------------------------c-------------------ceEEEEEecchhhc
Confidence 79999999742 1 7999999999 999
Q ss_pred EEcCCCCC--ccceee-ccchhHHHhheee
Q 028493 175 VKITPDIP--LDIACL-LSCGVSTGNYRTL 201 (208)
Q Consensus 175 ~~ip~~~~--~~~aa~-l~~~~~ta~~al~ 201 (208)
+++|++++ +.+++. +++...|||+++.
T Consensus 109 ~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~ 138 (329)
T cd05288 109 RKLDPSLGLPLSAYLGVLGMTGLTAYFGLT 138 (329)
T ss_pred EECCcccCCCHHHHHHhcccHHHHHHHHHH
Confidence 99999985 444444 7889999999874
No 121
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.42 E-value=7.7e-13 Score=115.00 Aligned_cols=120 Identities=28% Similarity=0.410 Sum_probs=93.4
Q ss_pred eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCC---CCCceeccceeEEEEEeCCC----CCCCCCCCEEee
Q 028493 35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMA---VFPRILGHEAVGVVESVGGG----VEEVREGDLVLP 107 (208)
Q Consensus 35 l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~---~~p~~~G~e~~G~Vv~vG~~----v~~~~vGd~V~~ 107 (208)
...++.++|.|++++++|++.++++|+.|.....|.+.... .+|.+++.++.|++..++.. +..+..||.+..
T Consensus 20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~ 99 (347)
T KOG1198|consen 20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA 99 (347)
T ss_pred EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence 44478899999999999999999999999999999887644 57766666666664443332 333445544432
Q ss_pred eccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCcccee
Q 028493 108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIAC 187 (208)
Q Consensus 108 ~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa 187 (208)
.. . .|+|+||.++|...++++|++++++++|
T Consensus 100 ~~------------------------------~-------------------~g~~aey~v~p~~~~~~~P~~l~~~~aa 130 (347)
T KOG1198|consen 100 FL------------------------------S-------------------SGGLAEYVVVPEKLLVKIPESLSFEEAA 130 (347)
T ss_pred cc------------------------------C-------------------CCceeeEEEcchhhccCCCCccChhhhh
Confidence 11 1 2399999999999999999999999999
Q ss_pred eccchhHHHhheeeee
Q 028493 188 LLSCGVSTGNYRTLVD 203 (208)
Q Consensus 188 ~l~~~~~ta~~al~~~ 203 (208)
+++.++.|||.+|+..
T Consensus 131 ~~p~~~~tA~~al~~~ 146 (347)
T KOG1198|consen 131 ALPLAALTALSALFQL 146 (347)
T ss_pred cCchHHHHHHHHHHhc
Confidence 9999999999998654
No 122
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.41 E-value=7.6e-13 Score=109.35 Aligned_cols=100 Identities=30% Similarity=0.393 Sum_probs=88.3
Q ss_pred CeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCC
Q 028493 48 GEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNIC 127 (208)
Q Consensus 48 ~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c 127 (208)
+||+||+.++++|++|++...|..+ .+|.++|||++|+|+++|++++.+++||+|+...
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~~---~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~------------------ 59 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLLP---GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA------------------ 59 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCCC---CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe------------------
Confidence 5899999999999999998887642 3578999999999999999999999999998642
Q ss_pred CCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493 128 SKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 128 ~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
.| +|++|+.++...++++|+++++.+++.+++...|+|.++
T Consensus 60 -------------~g-------------------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~ 100 (293)
T cd05195 60 -------------PG-------------------AFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYAL 100 (293)
T ss_pred -------------cC-------------------cccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHH
Confidence 13 899999999999999999999999988888999998876
No 123
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.31 E-value=4.9e-12 Score=104.55 Aligned_cols=95 Identities=29% Similarity=0.401 Sum_probs=84.1
Q ss_pred EEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCc
Q 028493 52 IKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFV 131 (208)
Q Consensus 52 VkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~ 131 (208)
||+.++++|++|.+.+.|.++ .|.++|||++|+|+++|++++.+++||+|+...
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~---------------------- 55 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA---------------------- 55 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc----------------------
Confidence 789999999999999887643 257899999999999999999999999998642
Q ss_pred cCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493 132 NKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 132 ~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
.| +|++|+.++...++++|+++++++++.+.+.+.|+|.++
T Consensus 56 ---------~g-------------------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~ 96 (288)
T smart00829 56 ---------PG-------------------SFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYAL 96 (288)
T ss_pred ---------CC-------------------ceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHH
Confidence 13 899999999999999999999999998888999999876
No 124
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.18 E-value=7.1e-11 Score=99.27 Aligned_cols=115 Identities=24% Similarity=0.278 Sum_probs=87.4
Q ss_pred eEEEEeecCCCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceeccceeEEEEEe--CCCCCCCCCCCEEeeeccCC
Q 028493 35 LVMEEIEVDPPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILGHEAVGVVESV--GGGVEEVREGDLVLPVFQGD 112 (208)
Q Consensus 35 l~~~~~~~p~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G~e~~G~Vv~v--G~~v~~~~vGd~V~~~~~~~ 112 (208)
|+++++++|.|++||||||..|.++++.....++....+ ..|+.+|-..+|-+++. -+....|++||.|....
T Consensus 27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~SY--~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~--- 101 (340)
T COG2130 27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAPSY--APPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS--- 101 (340)
T ss_pred ceeEeccCCCCCcCceEEEEEEeccCHHHeecccCCccc--CCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc---
Confidence 999999999999999999999999999666555443322 34666676666555542 26678899999998642
Q ss_pred CCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCC-Cccc-eeecc
Q 028493 113 CGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDI-PLDI-ACLLS 190 (208)
Q Consensus 113 c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~-~~~~-aa~l~ 190 (208)
+|+||.+++.+.+.++.... ++.. ...++
T Consensus 102 -------------------------------------------------GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLG 132 (340)
T COG2130 102 -------------------------------------------------GWQEYAISDGEGLRKLDPSPAPLSAYLGVLG 132 (340)
T ss_pred -------------------------------------------------cceEEEeechhhceecCCCCCCcchHHhhcC
Confidence 79999999999999997543 3322 44678
Q ss_pred chhHHHhheeeee
Q 028493 191 CGVSTGNYRTLVD 203 (208)
Q Consensus 191 ~~~~ta~~al~~~ 203 (208)
..+.|||.+|+..
T Consensus 133 mpG~TAY~gLl~i 145 (340)
T COG2130 133 MPGLTAYFGLLDI 145 (340)
T ss_pred CchHHHHHHHHHh
Confidence 8899999998643
No 125
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=98.92 E-value=1.5e-09 Score=90.57 Aligned_cols=77 Identities=29% Similarity=0.352 Sum_probs=67.5
Q ss_pred CCCCCCCCCCceeccceeEEEEEeCCCCCCCCCCCEEeeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCccccc
Q 028493 69 STQPPMAVFPRILGHEAVGVVESVGGGVEEVREGDLVLPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRD 148 (208)
Q Consensus 69 g~~~~~~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~ 148 (208)
|.++. ++|.++|||++|+|+++|+++++|++||+|+.. +
T Consensus 14 ~~~~~--~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~---------------------------------~------ 52 (277)
T cd08255 14 GTEKL--PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF---------------------------------G------ 52 (277)
T ss_pred cCccC--cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec---------------------------------C------
Confidence 44554 688999999999999999999999999999853 1
Q ss_pred CCCceeeeccCcccccceEEEecCcEEEcCCCCCccceeeccchhHHHhhee
Q 028493 149 LKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDIACLLSCGVSTGNYRT 200 (208)
Q Consensus 149 ~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~aa~l~~~~~ta~~al 200 (208)
.|++|++++...++++|+++++++++++ +.+.|||+++
T Consensus 53 -------------~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~ 90 (277)
T cd08255 53 -------------PHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV 90 (277)
T ss_pred -------------CcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH
Confidence 6899999999999999999999888877 7889999875
No 126
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=98.08 E-value=4.2e-05 Score=64.73 Aligned_cols=113 Identities=26% Similarity=0.261 Sum_probs=76.2
Q ss_pred eEEE--EeecC-CCCCCeEEEEEEeeeCChhhhhhhcCCCCCCCCCCceec----cceeEEEEEeCCCCCCCCCCCEEee
Q 028493 35 LVME--EIEVD-PPKAGEVRIKILCTSLCHSDVTFWRSTQPPMAVFPRILG----HEAVGVVESVGGGVEEVREGDLVLP 107 (208)
Q Consensus 35 l~~~--~~~~p-~~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~~~~p~~~G----~e~~G~Vv~vG~~v~~~~vGd~V~~ 107 (208)
|.++ +++.+ ++++++||||..|.+..+.....+.-..+.....|+.+| ..++|.|++. +-+++++||.|..
T Consensus 22 ~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kVi~S--~~~~~~~GD~v~g 99 (343)
T KOG1196|consen 22 FEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKVIDS--GHPNYKKGDLVWG 99 (343)
T ss_pred ceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEEEec--CCCCCCcCceEEE
Confidence 4443 44443 458899999999999999988766543322111222222 3788999994 5578999999986
Q ss_pred eccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCc--EEEcC--CCCCc
Q 028493 108 VFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTH--VVKIT--PDIPL 183 (208)
Q Consensus 108 ~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~--v~~ip--~~~~~ 183 (208)
.. +|.||.++.+.. .++++ .+.++
T Consensus 100 ~~----------------------------------------------------gWeeysii~~~~~~~~ki~~~~~~pL 127 (343)
T KOG1196|consen 100 IV----------------------------------------------------GWEEYSVITPNDLEHFKIQHPTDVPL 127 (343)
T ss_pred ec----------------------------------------------------cceEEEEecCcchhcccCCCCCccCH
Confidence 43 799999997653 34443 45555
Q ss_pred cce-eeccchhHHHhheee
Q 028493 184 DIA-CLLSCGVSTGNYRTL 201 (208)
Q Consensus 184 ~~a-a~l~~~~~ta~~al~ 201 (208)
... ..++..++|||..++
T Consensus 128 s~ylg~lGm~glTAy~Gf~ 146 (343)
T KOG1196|consen 128 SYYLGLLGMPGLTAYAGFY 146 (343)
T ss_pred hhhhhccCCchhHHHHHHH
Confidence 553 356788999998764
No 127
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=97.60 E-value=4.8e-05 Score=74.12 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=88.9
Q ss_pred eEEEEeecC--C-CCCCeEEEEEEeeeCChhhhhhhcCCCCCC------CCCCceeccceeEEEEEeCCCCCCCCCCCEE
Q 028493 35 LVMEEIEVD--P-PKAGEVRIKILCTSLCHSDVTFWRSTQPPM------AVFPRILGHEAVGVVESVGGGVEEVREGDLV 105 (208)
Q Consensus 35 l~~~~~~~p--~-~~~~eVlVkV~a~~l~~sD~~~~~g~~~~~------~~~p~~~G~e~~G~Vv~vG~~v~~~~vGd~V 105 (208)
|++.+-+.. . ..++.=+--|-|+.||..|+++..|..+.. ......+|-|++|+ .+-|.||
T Consensus 1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence 566665554 2 356777888999999999999999986551 12347899999987 4568999
Q ss_pred eeeccCCCCCCccccCCCCCCCCCCccCCCCCCCCCCCcccccCCCceeeeccCcccccceEEEecCcEEEcCCCCCccc
Q 028493 106 LPVFQGDCGECRDCKSPKSNICSKFVNKDNQSMPRDGTNRFRDLKGEVIHNVLNVSSFTEYTVVDVTHVVKITPDIPLDI 185 (208)
Q Consensus 106 ~~~~~~~c~~c~~~~~g~~~~c~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~g~~~e~~~v~~~~v~~ip~~~~~~~ 185 (208)
++.... - ++++.+.++.+.++.+|++...++
T Consensus 1499 M~mvpA------------------------------k-------------------sLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MGMVPA------------------------------K-------------------SLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred EEeeeh------------------------------h-------------------hhhhhhhcchhhhhhCCcccchhh
Confidence 876531 1 789999999999999999999999
Q ss_pred eeeccchhHHHhheeeeeE
Q 028493 186 ACLLSCGVSTGNYRTLVDV 204 (208)
Q Consensus 186 aa~l~~~~~ta~~al~~~~ 204 (208)
|+.+++.+.|+|+||+.+-
T Consensus 1530 AstVP~VYsTaYYALVvRG 1548 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRG 1548 (2376)
T ss_pred cccCceEeeeehhhhhhhc
Confidence 9999999999999997654
No 128
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=95.60 E-value=0.014 Score=30.35 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=15.8
Q ss_pred eeeEEEecCCCCeEEEEeecCCC
Q 028493 23 CRAAISRIPGKPLVMEEIEVDPP 45 (208)
Q Consensus 23 ~ka~~~~~~~~~l~~~~~~~p~~ 45 (208)
|||++|+++++ +++++++.|.+
T Consensus 1 MkAv~y~G~~~-v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD-VRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE-EEEEEE----S
T ss_pred CcceEEeCCCc-eEEEECCCccc
Confidence 79999999998 99999998864
No 129
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=86.93 E-value=1.5 Score=31.46 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCC----CCCCCCEEee
Q 028493 86 VGVVESVGGGVE----EVREGDLVLP 107 (208)
Q Consensus 86 ~G~Vv~vG~~v~----~~~vGd~V~~ 107 (208)
.|.|+++|++.. .+++||+|+.
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~ 71 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLL 71 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEE
Confidence 699999999854 3899999974
No 130
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=81.85 E-value=2.9 Score=29.40 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.5
Q ss_pred eeEEEEEeCCCCC----CCCCCCEEee
Q 028493 85 AVGVVESVGGGVE----EVREGDLVLP 107 (208)
Q Consensus 85 ~~G~Vv~vG~~v~----~~~vGd~V~~ 107 (208)
..|.|+++|++.. .+++||+|+.
T Consensus 36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~ 62 (91)
T PRK14533 36 MKAEVVAVGKLDDEEDFDIKVGDKVIF 62 (91)
T ss_pred ceEEEEEECCCCccccccccCCCEEEE
Confidence 4799999997542 3899999974
No 131
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=80.63 E-value=2.2 Score=30.16 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=19.2
Q ss_pred eeEEEEEeCCCCC---------CCCCCCEEeee
Q 028493 85 AVGVVESVGGGVE---------EVREGDLVLPV 108 (208)
Q Consensus 85 ~~G~Vv~vG~~v~---------~~~vGd~V~~~ 108 (208)
..|+|+++|++.. .+++||+|+..
T Consensus 36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~ 68 (95)
T PRK00364 36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG 68 (95)
T ss_pred ceEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence 4799999999642 38999999743
No 132
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=77.39 E-value=2.9 Score=29.45 Aligned_cols=24 Identities=42% Similarity=0.432 Sum_probs=19.6
Q ss_pred eeEEEEEeCCCC---------CCCCCCCEEeee
Q 028493 85 AVGVVESVGGGV---------EEVREGDLVLPV 108 (208)
Q Consensus 85 ~~G~Vv~vG~~v---------~~~~vGd~V~~~ 108 (208)
..|+|+++|++. ..+++||+|+..
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~ 67 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFP 67 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEEC
Confidence 579999999973 349999999753
No 133
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=73.91 E-value=5.4 Score=27.95 Aligned_cols=24 Identities=42% Similarity=0.454 Sum_probs=17.3
Q ss_pred eeEEEEEeCC--------CC-CCCCCCCEEeee
Q 028493 85 AVGVVESVGG--------GV-EEVREGDLVLPV 108 (208)
Q Consensus 85 ~~G~Vv~vG~--------~v-~~~~vGd~V~~~ 108 (208)
..|+|+++|+ .+ ..+++||+|+..
T Consensus 35 ~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~ 67 (93)
T PF00166_consen 35 NQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFP 67 (93)
T ss_dssp EEEEEEEE-SEEETTTSSEEETSS-TTSEEEEE
T ss_pred ceeEEEEcCCccccCCCcEeeeeeeeccEEecc
Confidence 6899999999 22 358999999764
No 134
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=62.81 E-value=8.2 Score=27.36 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=17.1
Q ss_pred eEEEEEeCCCCC---------CCCCCCEEee
Q 028493 86 VGVVESVGGGVE---------EVREGDLVLP 107 (208)
Q Consensus 86 ~G~Vv~vG~~v~---------~~~vGd~V~~ 107 (208)
-|+|+++|++-. .+++||+|+.
T Consensus 37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf 67 (96)
T COG0234 37 EGEVVAVGPGRRDENGELVPLDVKVGDRVLF 67 (96)
T ss_pred ceEEEEEccceecCCCCEeccccccCCEEEE
Confidence 599999997421 2899999974
No 135
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=51.43 E-value=21 Score=25.64 Aligned_cols=28 Identities=39% Similarity=0.523 Sum_probs=20.5
Q ss_pred eccceeEEEEEeCCCCC---------CCCCCCEEeee
Q 028493 81 LGHEAVGVVESVGGGVE---------EVREGDLVLPV 108 (208)
Q Consensus 81 ~G~e~~G~Vv~vG~~v~---------~~~vGd~V~~~ 108 (208)
.+-...|+|+++|++-. ..++||+|...
T Consensus 40 ~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlp 76 (104)
T KOG1641|consen 40 VGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLP 76 (104)
T ss_pred ccccceEEEEEEcCccccCCCCCcCccccCCCEEEee
Confidence 34456789999988643 37899999764
No 136
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=43.49 E-value=55 Score=28.27 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=17.1
Q ss_pred CCCCCCCCEEeeeccCCCCCC
Q 028493 96 VEEVREGDLVLPVFQGDCGEC 116 (208)
Q Consensus 96 v~~~~vGd~V~~~~~~~c~~c 116 (208)
-..+++||+|...+...|..+
T Consensus 314 ~~~~~vGd~v~~~p~h~c~t~ 334 (358)
T cd06819 314 AAPLKIGDRLELVPGHCDPTV 334 (358)
T ss_pred CCCCCCCCEEEEECCCcCccc
Confidence 356999999999988877654
No 137
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=36.28 E-value=24 Score=25.70 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=27.5
Q ss_pred ceeccceeEEEEEeCCCCCCCCCCCEEeeec
Q 028493 79 RILGHEAVGVVESVGGGVEEVREGDLVLPVF 109 (208)
Q Consensus 79 ~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~ 109 (208)
.+.|-.++|+|.--|......++||+|++..
T Consensus 58 vI~g~~gSg~I~lNGAAAr~~~~GD~vII~s 88 (111)
T cd06919 58 VIPGERGSGVICLNGAAARLGQPGDRVIIMA 88 (111)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEE
Confidence 6789999999999998888899999998864
No 138
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=33.24 E-value=21 Score=26.23 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=24.5
Q ss_pred ceeccceeEEEEEeCCCCCCCCCCCEEeeec
Q 028493 79 RILGHEAVGVVESVGGGVEEVREGDLVLPVF 109 (208)
Q Consensus 79 ~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~ 109 (208)
.+.|-.++|+|.--|......++||+|++..
T Consensus 59 vI~g~~GSg~I~lNGaAArl~~~GD~vII~s 89 (116)
T PF02261_consen 59 VIPGERGSGVICLNGAAARLVQVGDRVIIMS 89 (116)
T ss_dssp EEEESTTTT-EEEEGGGGGCS-TT-EEEEEE
T ss_pred EEEccCCCcEEEECCHHHhccCCCCEEEEEE
Confidence 5788889999999999888899999998764
No 139
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=32.36 E-value=13 Score=22.53 Aligned_cols=13 Identities=31% Similarity=1.104 Sum_probs=7.2
Q ss_pred CCCCCccccCCCC
Q 028493 112 DCGECRDCKSPKS 124 (208)
Q Consensus 112 ~c~~c~~~~~g~~ 124 (208)
+|+.|-.||.|-.
T Consensus 15 SCGkC~PCR~Gt~ 27 (46)
T PF10589_consen 15 SCGKCTPCREGTR 27 (46)
T ss_dssp --S--HHHHCCCC
T ss_pred CCCCCCCcHhHHH
Confidence 6999999998743
No 140
>PF14031 D-ser_dehydrat: Putative serine dehydratase domain; PDB: 3LLX_A 3ANV_A 3AWO_A 3AWN_A 3ANU_A 3GWQ_A.
Probab=32.26 E-value=33 Score=23.99 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=18.0
Q ss_pred ceeEEEEEeCCCCCCCCCCCEEeeeccCCCCC
Q 028493 84 EAVGVVESVGGGVEEVREGDLVLPVFQGDCGE 115 (208)
Q Consensus 84 e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~c~~ 115 (208)
|=-|.|...+. -..+++||+|.+.+...|.+
T Consensus 53 eEHg~l~~~~~-~~~~~vGd~v~iiP~H~C~t 83 (94)
T PF14031_consen 53 EEHGILRLPDG-ADRLKVGDKVEIIPNHCCPT 83 (94)
T ss_dssp SS-EEEE-STT-GCGT-TT-EEEEEESSHHHH
T ss_pred cceeEEECCCC-CCCCCCCCEEEEECCccchh
Confidence 33355554333 34599999999998877754
No 141
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=31.94 E-value=33 Score=25.55 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=28.0
Q ss_pred ceeccceeEEEEEeCCCCCCCCCCCEEeeecc
Q 028493 79 RILGHEAVGVVESVGGGVEEVREGDLVLPVFQ 110 (208)
Q Consensus 79 ~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~ 110 (208)
.+.|-.++|+|---|......++||+|++...
T Consensus 59 vI~G~~GSg~I~lNGAAArl~~~GD~VII~sy 90 (126)
T TIGR00223 59 AIAGKRGSRIICVNGAAARCVSVGDIVIIASY 90 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence 67899999999999998888999999988653
No 142
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=30.60 E-value=33 Score=25.58 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=27.7
Q ss_pred ceeccceeEEEEEeCCCCCCCCCCCEEeeecc
Q 028493 79 RILGHEAVGVVESVGGGVEEVREGDLVLPVFQ 110 (208)
Q Consensus 79 ~~~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~ 110 (208)
.+.|-.++|+|.--|......++||+|++...
T Consensus 59 vI~g~~GSg~I~lNGAAAr~~~~GD~vII~ay 90 (126)
T PRK05449 59 VIAGERGSGVICLNGAAARLVQVGDLVIIAAY 90 (126)
T ss_pred EEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence 57888999999998988888999999988643
No 143
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=30.09 E-value=59 Score=22.96 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=10.9
Q ss_pred CCCCCCCEEeeec
Q 028493 97 EEVREGDLVLPVF 109 (208)
Q Consensus 97 ~~~~vGd~V~~~~ 109 (208)
+.|++||+|++..
T Consensus 75 ~~Lk~GD~V~ll~ 87 (100)
T PF10844_consen 75 DGLKVGDKVLLLR 87 (100)
T ss_pred cCCcCCCEEEEEE
Confidence 4699999998865
No 144
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=26.90 E-value=1.4e+02 Score=25.66 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=15.6
Q ss_pred CCCCCCCEEeeeccCCCCC
Q 028493 97 EEVREGDLVLPVFQGDCGE 115 (208)
Q Consensus 97 ~~~~vGd~V~~~~~~~c~~ 115 (208)
..+++||+|...+...|..
T Consensus 310 ~~~~vGd~i~~~p~h~c~t 328 (353)
T cd06820 310 ALPRVGDRVRVVPNHACVV 328 (353)
T ss_pred CCCCCCCEEEEECCCcCcc
Confidence 4699999999988877654
No 145
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=22.76 E-value=1.3e+02 Score=26.04 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=15.6
Q ss_pred CCCCCCCEEeeeccCCCCC
Q 028493 97 EEVREGDLVLPVFQGDCGE 115 (208)
Q Consensus 97 ~~~~vGd~V~~~~~~~c~~ 115 (208)
..+++||+|.+.+...|.+
T Consensus 314 ~~~~vGd~v~~~p~H~c~t 332 (361)
T cd06821 314 ARPEIGDVLYGIPRHICPT 332 (361)
T ss_pred CCCCCCCEEEEeCCCcCcc
Confidence 5589999999988877754
No 146
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=22.28 E-value=1.6e+02 Score=25.32 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=23.4
Q ss_pred ceeccceeEEEEEe--CCCCCCCCCCCEEeeeccCCCCCC
Q 028493 79 RILGHEAVGVVESV--GGGVEEVREGDLVLPVFQGDCGEC 116 (208)
Q Consensus 79 ~~~G~e~~G~Vv~v--G~~v~~~~vGd~V~~~~~~~c~~c 116 (208)
.....|--|.+... +++-..+++||+|.+.+...|.++
T Consensus 284 ~~~~s~eh~~~~~~~~~~~~~~~~vGd~v~~ip~H~c~t~ 323 (345)
T cd07376 284 AVLLSEEHEGRSEPLNTPDLDDLPIGDRVFLVPNHACETV 323 (345)
T ss_pred EecCCCCccceeccccCcccCCCCCCCEEEEeCCccccch
Confidence 33444445555321 233456999999999887766654
No 147
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=21.81 E-value=95 Score=27.42 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=24.1
Q ss_pred eccceeEEEEE--eCCCCCCCCCCCEEeeeccCCCCCC
Q 028493 81 LGHEAVGVVES--VGGGVEEVREGDLVLPVFQGDCGEC 116 (208)
Q Consensus 81 ~G~e~~G~Vv~--vG~~v~~~~vGd~V~~~~~~~c~~c 116 (208)
.+.|+.|.+.. .|+.-..+++||+|...+...|..|
T Consensus 323 ~~~~g~~e~~~~l~~~~~~~l~~gd~v~~r~~~~~~~~ 360 (388)
T cd06813 323 LPLEGAGEVQTPLTGPAAERLGIGDPVWFRHAKAGELC 360 (388)
T ss_pred ccccCCCCCcccccCCccccCCCCCEEEEecCCcchhh
Confidence 34455666655 3555566999999998776555444
No 148
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=20.74 E-value=3.2e+02 Score=19.40 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=15.0
Q ss_pred EEeecCCCCCCeEEEEEEee
Q 028493 38 EEIEVDPPKAGEVRIKILCT 57 (208)
Q Consensus 38 ~~~~~p~~~~~eVlVkV~a~ 57 (208)
...+.|.|.++|+..+|...
T Consensus 11 ~~~~~~~p~e~e~~g~V~~~ 30 (100)
T PRK04012 11 TRVRLPMPEEGEVFGVVEQM 30 (100)
T ss_pred eeEEccCCCCCEEEEEEEEE
Confidence 44567778899999998653
Done!