BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028494
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 10 LPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN---YPEKTETYYIVN 66
+P+ S++ G I TS VLD+ G+ LS N +++ I + D++ YPE+ +YI++
Sbjct: 171 VPACSRRAGYLIETSCTVLDLKGISLS--NAYHVLSYIKDVADISQNYYPERMGKFYIIH 228
Query: 67 APYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLP 111
+P+ FS +K+VKP L T K+ +L + + ELLK + +LP
Sbjct: 229 SPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLP 273
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 10 LPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLN---YPEKTETYYIVN 66
+P+ S++ G I TS VLD+ G+ LS N +++ I + D++ YPE+ +YI++
Sbjct: 171 VPACSRRAGYLIETSCTVLDLKGISLS--NAYHVLSYIKDVADISQNYYPERMGKFYIIH 228
Query: 67 APYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLP 111
+P+ FS +K+VKP L T K+ +L + + ELLK + +LP
Sbjct: 229 SPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLP 273
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 10 LPSASKKHGRYIGTSLKVLDMTGLKLS-ALNQIKLMTVITTIDDLNYPEKTETYYIVNAP 68
LP+ S+ G + TS ++D+ G+ +S A + + + + I YPE+ +YI+NAP
Sbjct: 156 LPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAP 215
Query: 69 YIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLP 111
+ FS +++ KP L T K+ +L + + ELLK + +LP
Sbjct: 216 FGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLP 258
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 14 SKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIF 71
+ K GR + T + D GL L L + ++ + + NYPE + ++V AP +F
Sbjct: 139 TTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLF 198
Query: 72 SACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTE 131
+ ++KP L E TR+K+ VL N ++ LLK + +P + G + GN +
Sbjct: 199 PVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVP---VEYGGTMTDPDGNPKCK 255
Query: 132 NCFSLDHAFHQRLY--NYIKQQAVLTESVVPIRQGSFH 167
+ + ++ Y + +KQQ E V I +GS H
Sbjct: 256 SKINYGGDIPRKYYVRDQVKQQ---YEHSVQISRGSSH 290
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 14 SKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIF 71
+ K GR + T + D GL L L + ++ + + NYPE + ++V AP +F
Sbjct: 139 TTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLF 198
Query: 72 SACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTE 131
+ ++KP L E TR+K+ VL N ++ LLK + +P + G + GN +
Sbjct: 199 PVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVP---VEYGGTMTDPDGNPKCK 255
Query: 132 NCFSLDHAFHQRLY--NYIKQQAVLTESVVPIRQGSFH 167
+ + ++ Y + +KQQ E V I +GS H
Sbjct: 256 SKINYGGDIPRKYYVRDQVKQQ---YEHSVQISRGSSH 290
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 10/158 (6%)
Query: 14 SKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIF 71
+ K GR + T + D GL L L + ++ + NYPE + ++V AP +F
Sbjct: 139 TTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLF 198
Query: 72 SACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTE 131
+ ++KP L E TR+K+ VL N ++ LLK + +P + G + GN +
Sbjct: 199 PVAYNLIKPFLSEDTRKKIXVLGANWKEVLLKHISPDQVP---VEYGGTXTDPDGNPKCK 255
Query: 132 NCFSLDHAFHQRLY--NYIKQQAVLTESVVPIRQGSFH 167
+ + ++ Y + +KQQ E V I +GS H
Sbjct: 256 SKINYGGDIPRKYYVRDQVKQQ---YEHSVQISRGSSH 290
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 27 VLDMTGLKLSALNQI------KLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKP 80
+ D+ G + S QI K+ V+T ++P K +++N P IF A + ++KP
Sbjct: 157 IFDLEGWQFSHAFQITPSVAKKIAAVLTD----SFPLKVRGIHLINEPVIFHAVFSMIKP 212
Query: 81 LLQERTRRKMQVLQGNGRDELLK 103
L E+ + ++ + N + LL+
Sbjct: 213 FLTEKIKERIHMHGNNYKQSLLQ 235
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 27 VLDMTGLKLSALNQI------KLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKP 80
+ D+ G + S QI K+ V+T ++P K +++N P IF A + +KP
Sbjct: 141 IFDLEGWQFSHAFQITPSVAKKIAAVLTD----SFPLKVRGIHLINEPVIFHAVFSXIKP 196
Query: 81 LLQERTRRKMQVLQGNGRDELLK 103
L E+ + ++ N + LL+
Sbjct: 197 FLTEKIKERIHXHGNNYKQSLLQ 219
>pdb|2GB7|A Chain A, Metal-Depleted Ecl18ki In Complex With Uncleaved,
Modified Dna
pdb|2GB7|B Chain B, Metal-Depleted Ecl18ki In Complex With Uncleaved,
Modified Dna
pdb|2GB7|C Chain C, Metal-Depleted Ecl18ki In Complex With Uncleaved,
Modified Dna
pdb|2GB7|D Chain D, Metal-Depleted Ecl18ki In Complex With Uncleaved,
Modified Dna
pdb|2FQZ|A Chain A, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
pdb|2FQZ|B Chain B, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
pdb|2FQZ|C Chain C, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
pdb|2FQZ|D Chain D, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
Length = 305
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 46 VITTIDDLNYPEKTETYYIVN-APYIFSA---CWKVVKPLLQERTRRKMQVLQGNGR 98
V T DL Y +K Y++ N + YI + CWK +P +E T R + L R
Sbjct: 28 VYKTFCDLGYDQKNSDYFLNNPSEYIIAMRKNCWKEFEPFEKEFTTRMLSYLIDEER 84
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSR|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
pdb|1WSV|B Chain B, Crystal Structure Of Human T-Protein Of Glycine Cleavage
System
Length = 375
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 50 IDDLNYPEKTETY-YIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLKIMDYA 108
+DDL +E + Y+V+ + CW+ L+Q++ R LQ GRD L+++D A
Sbjct: 99 LDDLIVTNTSEGHLYVVSN----AGCWEKDLALMQDKVRE----LQNQGRDVGLEVLDNA 150
Query: 109 SL 110
L
Sbjct: 151 LL 152
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 30 MTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQER 85
T + ++L L ++ + D ++P + + + ++ P+ F+ + VVKP L+ +
Sbjct: 206 FTMQQAASLRTSDLRKMVDMLQD-SFPARFKAIHFIHQPWYFTTTYNVVKPFLKSK 260
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 49 TIDDLNYPEKTETYYIVNAPYIFS-ACWKVVKPLLQERTR--RKMQVLQGNG--RDELLK 103
ID NY ++++ ++VNA Y + A K+ + L T+ M++L G +D LLK
Sbjct: 353 AIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLK 412
Query: 104 I 104
I
Sbjct: 413 I 413
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,259,038
Number of Sequences: 62578
Number of extensions: 252473
Number of successful extensions: 560
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 19
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)