Query 028494
Match_columns 208
No_of_seqs 272 out of 1178
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 12:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 99.9 1.2E-26 2.5E-31 203.6 8.5 120 2-125 139-260 (317)
2 PF00650 CRAL_TRIO: CRAL/TRIO 99.9 3.3E-24 7E-29 168.9 7.1 100 18-121 57-159 (159)
3 smart00516 SEC14 Domain in hom 99.9 1E-22 2.2E-27 160.2 9.6 101 17-122 57-157 (158)
4 KOG1470 Phosphatidylinositol t 99.9 1.7E-22 3.7E-27 177.0 7.9 110 8-124 136-245 (324)
5 cd00170 SEC14 Sec14p-like lipi 99.9 1.5E-21 3.3E-26 151.2 9.1 107 10-121 50-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.1 9.5E-11 2.1E-15 92.0 4.6 97 22-124 48-146 (149)
7 KOG4406 CDC42 Rho GTPase-activ 96.6 0.003 6.5E-08 57.7 5.1 85 24-110 131-215 (467)
8 PF03641 Lysine_decarbox: Poss 32.0 68 0.0015 24.5 3.7 62 42-105 65-133 (133)
9 PF04548 AIG1: AIG1 family; I 31.5 1.7E+02 0.0036 23.9 6.2 71 23-93 49-122 (212)
10 TIGR02886 spore_II_AA anti-sig 28.8 2.1E+02 0.0046 20.1 5.9 52 24-79 40-91 (106)
11 PF04378 RsmJ: Ribosomal RNA s 28.4 40 0.00086 29.0 2.0 29 60-88 206-234 (245)
12 PLN02824 hydrolase, alpha/beta 28.2 2E+02 0.0044 24.0 6.3 60 3-68 42-136 (294)
13 KOG3923 D-aspartate oxidase [A 28.0 24 0.00052 31.7 0.5 43 22-75 182-224 (342)
14 TIGR02364 dha_pts dihydroxyace 26.4 1.4E+02 0.0031 22.7 4.5 50 22-81 60-109 (125)
15 PRK14484 phosphotransferase ma 25.2 1.1E+02 0.0024 23.5 3.7 56 12-81 50-105 (124)
16 COG2961 ComJ Protein involved 24.9 47 0.001 29.0 1.7 27 60-86 237-263 (279)
17 PRK03592 haloalkane dehalogena 24.6 2.2E+02 0.0047 23.9 5.8 60 2-67 39-126 (295)
18 KOG4178 Soluble epoxide hydrol 24.1 2.8E+02 0.006 25.0 6.5 63 3-70 57-149 (322)
19 KOG1534 Putative transcription 22.8 3.3E+02 0.0071 23.5 6.3 85 21-109 96-193 (273)
20 PF04838 Baculo_LEF5: Baculovi 22.8 49 0.0011 26.5 1.3 69 43-112 16-101 (159)
21 PF01740 STAS: STAS domain; I 21.2 1.5E+02 0.0032 21.3 3.7 50 24-77 49-98 (117)
22 PF14213 DUF4325: Domain of un 20.7 2.8E+02 0.0061 18.7 5.2 46 26-74 20-67 (74)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=99.93 E-value=1.2e-26 Score=203.58 Aligned_cols=120 Identities=38% Similarity=0.558 Sum_probs=110.4
Q ss_pred chhHHHhhhHhhHHhcCCccccEEEEEECCCCCcCCCcc--hHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHh
Q 028494 2 NEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 79 (208)
Q Consensus 2 ~ey~~r~~l~~~s~~~g~~i~~~v~IiDl~G~sl~~l~~--i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivk 79 (208)
.|.+.+++++.+++..+++++|++.|+||+|++++|++. ...++.++.++|++|||+++++||||+|++|+++|+++|
T Consensus 139 ~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ik 218 (317)
T KOG1471|consen 139 FEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVK 218 (317)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHh
Confidence 366777889888888889999999999999999999954 578999999999999999999999999999999999999
Q ss_pred hccccccccceEEccCCChhHHHhhCCCCCcccccccCCCCccccC
Q 028494 80 PLLQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHI 125 (208)
Q Consensus 80 pfL~~kt~~KI~~~~~~~~~~L~k~id~~~LP~~~gge~GG~~~~~ 125 (208)
|||+++|++||+++++++.++|+++|+++.||.+| ||++.+.
T Consensus 219 pfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~y----GG~~~~~ 260 (317)
T KOG1471|consen 219 PFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEY----GGTCGDL 260 (317)
T ss_pred ccCCHHHHhhheecCCCchhhhhhhCCHhhCcccc----CCCcccc
Confidence 99999999999977777899999999999999999 7777773
No 2
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.90 E-value=3.3e-24 Score=168.86 Aligned_cols=100 Identities=31% Similarity=0.608 Sum_probs=85.3
Q ss_pred CCccccEEEEEECCCCCcCCCcc--hHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhccccccccceEEccC
Q 028494 18 GRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQG 95 (208)
Q Consensus 18 g~~i~~~v~IiDl~G~sl~~l~~--i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpfL~~kt~~KI~~~~~ 95 (208)
+.+++++++|+|++|++++++.. +++++.++++++++||+|++++|++|+|++|+++|++++|||+++|++||+++++
T Consensus 57 ~~~~~~~~~iiD~~g~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~ 136 (159)
T PF00650_consen 57 GGQVEGIVVIIDLSGFSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSG 136 (159)
T ss_dssp TSHHH-EEEEEE-TT--HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECT
T ss_pred cccceeEEEEEeCCCceEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECC
Confidence 46889999999999999998753 6889999999999999999999999999999999999999999999999999975
Q ss_pred -CChhHHHhhCCCCCcccccccCCCCc
Q 028494 96 -NGRDELLKIMDYASLPHFCRKEGSGS 121 (208)
Q Consensus 96 -~~~~~L~k~id~~~LP~~~gge~GG~ 121 (208)
++.++|.++||+++||.+| ||+
T Consensus 137 ~~~~~~l~~~i~~~~lP~~~----GG~ 159 (159)
T PF00650_consen 137 SDWKAKLKEYIDPEQLPVEY----GGT 159 (159)
T ss_dssp TCHCHHHCCCSTGGGSBGGG----TSS
T ss_pred cccHHHHHhhCCHhHCchhc----CCC
Confidence 3447999999999999999 775
No 3
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.88 E-value=1e-22 Score=160.16 Aligned_cols=101 Identities=30% Similarity=0.576 Sum_probs=95.0
Q ss_pred cCCccccEEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhccccccccceEEccCC
Q 028494 17 HGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGN 96 (208)
Q Consensus 17 ~g~~i~~~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpfL~~kt~~KI~~~~~~ 96 (208)
...+++++++|+|++|++++++. ++.++.++.+++.+||+|++++||||+|++|+++|+++++||++++++||++++++
T Consensus 57 ~~~~~~~~~~i~D~~~~~~~~~~-~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~ 135 (158)
T smart00516 57 KTGGIEGFTVIFDLKGLSMSNPD-LSVLRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGND 135 (158)
T ss_pred cCCCeeeEEEEEECCCCCccccc-HHHHHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCC
Confidence 56688999999999999999964 68999999999999999999999999999999999999999999999999999976
Q ss_pred ChhHHHhhCCCCCcccccccCCCCcc
Q 028494 97 GRDELLKIMDYASLPHFCRKEGSGSS 122 (208)
Q Consensus 97 ~~~~L~k~id~~~LP~~~gge~GG~~ 122 (208)
+.+.|.++||+++||.+| ||++
T Consensus 136 ~~~~L~~~i~~~~lP~~~----GG~~ 157 (158)
T smart00516 136 SKEELLEYIDPEQLPEEL----GGTL 157 (158)
T ss_pred CHHHHHhhCCHhhCcHhh----CCCC
Confidence 789999999999999999 8875
No 4
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=99.87 E-value=1.7e-22 Score=176.96 Aligned_cols=110 Identities=28% Similarity=0.480 Sum_probs=101.1
Q ss_pred hhhHhhHHhcCCccccEEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhccccccc
Q 028494 8 VVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTR 87 (208)
Q Consensus 8 ~~l~~~s~~~g~~i~~~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpfL~~kt~ 87 (208)
++|+.+.....++.+++++++|++|++++|++ +++.+.+++++|+||||||+.++++|+||+|..+|+++||||++.|+
T Consensus 136 y~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~d-~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~ 214 (324)
T KOG1470|consen 136 YTLENAILFLPPGQEQFVWLFDLTGFSMSNPD-IKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTA 214 (324)
T ss_pred HHHHHHHHhCCCCcceEEEEEecccCcccCCC-cHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhh
Confidence 56777778888889999999999999999986 79999999999999999999999999999999999999999999999
Q ss_pred cceEEccCCChhHHHhhCCCCCcccccccCCCCcccc
Q 028494 88 RKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRH 124 (208)
Q Consensus 88 ~KI~~~~~~~~~~L~k~id~~~LP~~~gge~GG~~~~ 124 (208)
+||+|+.+ .+.|.++||+++||..| ||+...
T Consensus 215 ~Kv~F~~~--~~~l~~~~d~~~l~s~~----GG~~~~ 245 (324)
T KOG1470|consen 215 SKVKFVEP--KDDLSEYFDESQLPSLF----GGKLLF 245 (324)
T ss_pred ceeEEecC--hhHHHhhCCccccchhh----CCCccc
Confidence 99999974 56699999999999999 885544
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.86 E-value=1.5e-21 Score=151.18 Aligned_cols=107 Identities=36% Similarity=0.638 Sum_probs=94.9
Q ss_pred hHhhHHhcCCccccEEEEEECCCCCcCCCc-chHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhcccccccc
Q 028494 10 LPSASKKHGRYIGTSLKVLDMTGLKLSALN-QIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRR 88 (208)
Q Consensus 10 l~~~s~~~g~~i~~~v~IiDl~G~sl~~l~-~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpfL~~kt~~ 88 (208)
++...+....+.+++++|+|++|++++++. .++.+++++.+++++||++++++|+||+|++|+.+|+++++|+++++++
T Consensus 50 ~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ 129 (157)
T cd00170 50 LEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRK 129 (157)
T ss_pred HHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhh
Confidence 334444444555799999999999999884 4688999999999999999999999999999999999999999999999
Q ss_pred ceEEccCCChhHHHhhCCCCCcccccccCCCCc
Q 028494 89 KMQVLQGNGRDELLKIMDYASLPHFCRKEGSGS 121 (208)
Q Consensus 89 KI~~~~~~~~~~L~k~id~~~LP~~~gge~GG~ 121 (208)
||++++++ .++|.+++|+++||.+| ||+
T Consensus 130 ki~~~~~~-~~~L~~~i~~~~Lp~~~----GG~ 157 (157)
T cd00170 130 KIVFLGSD-KEELLKYIDKEQLPEEY----GGT 157 (157)
T ss_pred hEEEecCC-HHHHHhhCChhhCcHhh----CCC
Confidence 99999854 78999999999999999 774
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.09 E-value=9.5e-11 Score=92.01 Aligned_cols=97 Identities=19% Similarity=0.313 Sum_probs=70.4
Q ss_pred ccEEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHH-HHHhhcccccc-ccceEEccCCChh
Q 028494 22 GTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACW-KVVKPLLQERT-RRKMQVLQGNGRD 99 (208)
Q Consensus 22 ~~~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w-~ivkpfL~~kt-~~KI~~~~~~~~~ 99 (208)
.++++|+|+++.+..+-..+..++++..++...|+..++++||||+.++++.++ .+.+++.+.+. ..||+++. ..+
T Consensus 48 ~~f~vVid~~~~~~~~~~~~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~--sl~ 125 (149)
T PF13716_consen 48 KPFSVVIDHTGFSRSSEPSLSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVS--SLS 125 (149)
T ss_dssp S-EEEEEE-TT--GGG---HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEES--STC
T ss_pred CCEEEEEEcCCCccccCCchHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEEC--CHH
Confidence 459999999999887665578899999999999999999999999999999999 56677889998 89999887 489
Q ss_pred HHHhhCCCCCcccccccCCCCcccc
Q 028494 100 ELLKIMDYASLPHFCRKEGSGSSRH 124 (208)
Q Consensus 100 ~L~k~id~~~LP~~~gge~GG~~~~ 124 (208)
+|.++||+++||..+ ||++.+
T Consensus 126 ~L~~~i~~~qL~~~l----p~~~~~ 146 (149)
T PF13716_consen 126 ELSKHIDPSQLPESL----PGVLQY 146 (149)
T ss_dssp GGGGTSGGGG----------HHH--
T ss_pred HHHhhCCHHHhcccC----CCEEec
Confidence 999999999999999 888766
No 7
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=96.64 E-value=0.003 Score=57.67 Aligned_cols=85 Identities=20% Similarity=0.332 Sum_probs=62.8
Q ss_pred EEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhccccccccceEEccCCChhHHHh
Q 028494 24 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNGRDELLK 103 (208)
Q Consensus 24 ~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpfL~~kt~~KI~~~~~~~~~~L~k 103 (208)
++.++=-.|+...+...++++.....-+..+|=--++.+|+|++-|+..++|+++|||++.|..+||+-+. ..++|.+
T Consensus 131 Yt~vYfh~gl~s~nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n--~lseL~~ 208 (467)
T KOG4406|consen 131 YTLVYFHHGLPSDNKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFN--SLSELFE 208 (467)
T ss_pred ceeeehhcCCcccccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEee--hHHHHHH
Confidence 33344344554444433455555555555567777899999999999999999999999999999999886 5889998
Q ss_pred hCCCCCc
Q 028494 104 IMDYASL 110 (208)
Q Consensus 104 ~id~~~L 110 (208)
++.-+.|
T Consensus 209 ~l~l~rL 215 (467)
T KOG4406|consen 209 ALKLNRL 215 (467)
T ss_pred hhhhhhh
Confidence 8875543
No 8
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=32.00 E-value=68 Score=24.48 Aligned_cols=62 Identities=6% Similarity=0.114 Sum_probs=41.1
Q ss_pred HHHHHHHHhhhcccccc-ce-eEEEEcCchHHHHHHHHH-----hhccccccccceEEccCCChhHHHhhC
Q 028494 42 KLMTVITTIDDLNYPEK-TE-TYYIVNAPYIFSACWKVV-----KPLLQERTRRKMQVLQGNGRDELLKIM 105 (208)
Q Consensus 42 ~~~k~~~~i~q~~YPer-l~-~i~iVNaP~~f~~~w~iv-----kpfL~~kt~~KI~~~~~~~~~~L~k~i 105 (208)
..+-.++.++...+=.+ -+ -++++|..-++.-+++.+ .-|++++..+.+.++. +.+++.++|
T Consensus 65 GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d--~~~e~~~~i 133 (133)
T PF03641_consen 65 GTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVD--DPEEALEYI 133 (133)
T ss_dssp HHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEES--SHHHHHHHH
T ss_pred chHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeC--CHHHHHhhC
Confidence 34555555554222222 23 689999887777777766 4688888999999986 477776653
No 9
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=31.48 E-value=1.7e+02 Score=23.94 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=47.1
Q ss_pred cEEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchH---HHHHHHHHhhccccccccceEEc
Q 028494 23 TSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYI---FSACWKVVKPLLQERTRRKMQVL 93 (208)
Q Consensus 23 ~~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~---f~~~w~ivkpfL~~kt~~KI~~~ 93 (208)
.-+.|+|.-|+.=.....-...+.+.+.+..+.|..-.-+++++..++ -..+++.++..+.++..+.+.|+
T Consensus 49 ~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivv 122 (212)
T PF04548_consen 49 RQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVV 122 (212)
T ss_dssp EEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred eEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHH
Confidence 356799999984444332346677777777788887788888888755 34677778777788777775554
No 10
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=28.80 E-value=2.1e+02 Score=20.15 Aligned_cols=52 Identities=4% Similarity=0.034 Sum_probs=34.7
Q ss_pred EEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHh
Q 028494 24 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 79 (208)
Q Consensus 24 ~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivk 79 (208)
-.+|+||+++..=....+..+..+..-++ .+=.++++++.+.-+.-++.+..
T Consensus 40 ~~vilDls~v~~iDssgi~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 91 (106)
T TIGR02886 40 KHLILNLKNVTFMDSSGLGVILGRYKKIK----NEGGEVIVCNVSPAVKRLFELSG 91 (106)
T ss_pred CEEEEECCCCcEecchHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHhC
Confidence 46799999998766544554444444333 24478999999887777766543
No 11
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=28.44 E-value=40 Score=29.04 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=21.7
Q ss_pred eeEEEEcCchHHHHHHHHHhhcccccccc
Q 028494 60 ETYYIVNAPYIFSACWKVVKPLLQERTRR 88 (208)
Q Consensus 60 ~~i~iVNaP~~f~~~w~ivkpfL~~kt~~ 88 (208)
..++|||+||-+.-..+-+-|+|.+....
T Consensus 206 SGm~iiNPPw~l~~~l~~~l~~L~~~L~~ 234 (245)
T PF04378_consen 206 SGMLIINPPWTLDEELEEILPWLAETLAQ 234 (245)
T ss_dssp EEEEEES--TTHHHHHHHHHHHHHHHSST
T ss_pred ceEEEEcCCccHHHHHHHHHHHHHHHhCc
Confidence 67999999999998888888877765543
No 12
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=28.18 E-value=2e+02 Score=24.01 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=38.3
Q ss_pred hhHHHhhhHhhHHhcCCccccEEEEEECCCCCcCCCc-----------ch----HHHHH--------------------H
Q 028494 3 EYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALN-----------QI----KLMTV--------------------I 47 (208)
Q Consensus 3 ey~~r~~l~~~s~~~g~~i~~~v~IiDl~G~sl~~l~-----------~i----~~~k~--------------------~ 47 (208)
-++|+.+++..+++ .-++.+|+.|.+.+.-. .+ ..+.. +
T Consensus 42 ~~~w~~~~~~L~~~------~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~v 115 (294)
T PLN02824 42 ADHWRKNTPVLAKS------HRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDVVGDPAFVICNSVGGVV 115 (294)
T ss_pred hhHHHHHHHHHHhC------CeEEEEcCCCCCCCCCCccccccccccCCHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHH
Confidence 45788877776543 35788999999876421 11 11111 1
Q ss_pred HHhhhccccccceeEEEEcCc
Q 028494 48 TTIDDLNYPEKTETYYIVNAP 68 (208)
Q Consensus 48 ~~i~q~~YPerl~~i~iVNaP 68 (208)
...+...||+++.++.++|++
T Consensus 116 a~~~a~~~p~~v~~lili~~~ 136 (294)
T PLN02824 116 GLQAAVDAPELVRGVMLINIS 136 (294)
T ss_pred HHHHHHhChhheeEEEEECCC
Confidence 222355799999999999974
No 13
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=28.03 E-value=24 Score=31.66 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=34.3
Q ss_pred ccEEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHH
Q 028494 22 GTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACW 75 (208)
Q Consensus 22 ~~~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w 75 (208)
.++-+|+.|+|+.-+.+.. .++.||-| +.+.-|.|||+..+++
T Consensus 182 ~~~DVivNCtGL~a~~L~g----------Dd~~yPiR-GqVl~V~ApWvkhf~~ 224 (342)
T KOG3923|consen 182 PEYDVIVNCTGLGAGKLAG----------DDDLYPIR-GQVLKVDAPWVKHFIY 224 (342)
T ss_pred CCCcEEEECCccccccccC----------Ccceeecc-ceEEEeeCCceeEEEE
Confidence 4567899999998877632 24589999 8999999999877665
No 14
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=26.36 E-value=1.4e+02 Score=22.74 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=34.2
Q ss_pred ccEEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhc
Q 028494 22 GTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPL 81 (208)
Q Consensus 22 ~~~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpf 81 (208)
++++++.|+ |=+..+.. . ++.+++ ++..+.+..+|+|.+-..+-..+..-
T Consensus 60 dgVlvl~DL-Ggs~~n~e---~---a~~~l~---~~~~~~v~g~nlPlvega~~aa~~~~ 109 (125)
T TIGR02364 60 DGVLIFYDL-GSAVMNAE---M---AVELLE---DEDRDKVHLVDAPLVEGAFAAAVEAQ 109 (125)
T ss_pred CCEEEEEcC-CCcHhHHH---H---HHHHhc---cccccEEEEechhHHHHHHHHHHHHc
Confidence 689999999 76554321 1 222222 45668899999999999888777543
No 15
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=25.23 E-value=1.1e+02 Score=23.53 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=34.7
Q ss_pred hhHHhcCCccccEEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhc
Q 028494 12 SASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPL 81 (208)
Q Consensus 12 ~~s~~~g~~i~~~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpf 81 (208)
++-++... ++++++.|+ |-+..+.. . .+.++. +- .++.++++|.+=..+-..+...
T Consensus 50 ~ai~~~~~--dGVlVltDL-Gssp~n~~---~---a~e~~~----~~-~~v~~~daPlVEGa~~Aav~~~ 105 (124)
T PRK14484 50 EAIEKNES--DGVLIFFDL-GSAEMNAE---M---AIEMLD----GE-KKIIIIDAPIVEGAFTAAVLLS 105 (124)
T ss_pred HHHHhcCc--CCeEEEEeC-CChHHHHH---H---HHHhcC----CC-CcEEEECCcHHHHHHHHHHHHc
Confidence 33344444 899999999 76654432 1 222222 22 8899999998876666555443
No 16
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=24.94 E-value=47 Score=29.04 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=22.8
Q ss_pred eeEEEEcCchHHHHHHHHHhhcccccc
Q 028494 60 ETYYIVNAPYIFSACWKVVKPLLQERT 86 (208)
Q Consensus 60 ~~i~iVNaP~~f~~~w~ivkpfL~~kt 86 (208)
..++|||+||-+.--...+-|+|....
T Consensus 237 SGMivINPPwtle~ql~~~LP~L~~~L 263 (279)
T COG2961 237 SGMIVINPPWTLEQQLRAALPWLTTLL 263 (279)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHHh
Confidence 579999999999998888888877543
No 17
>PRK03592 haloalkane dehalogenase; Provisional
Probab=24.60 E-value=2.2e+02 Score=23.87 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=38.1
Q ss_pred chhHHHhhhHhhHHhcCCccccEEEEEECCCCCcCCCcc----h----HHHHH--------------------HHHhhhc
Q 028494 2 NEYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ----I----KLMTV--------------------ITTIDDL 53 (208)
Q Consensus 2 ~ey~~r~~l~~~s~~~g~~i~~~v~IiDl~G~sl~~l~~----i----~~~k~--------------------~~~i~q~ 53 (208)
+.+.|+.+.+..++. +-++.+|+.|.+.+.... + ..+.. +.-.+..
T Consensus 39 ~~~~w~~~~~~L~~~------~~via~D~~G~G~S~~~~~~~~~~~~a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~ 112 (295)
T PRK03592 39 SSYLWRNIIPHLAGL------GRCLAPDLIGMGASDKPDIDYTFADHARYLDAWFDALGLDDVVLVGHDWGSALGFDWAA 112 (295)
T ss_pred CHHHHHHHHHHHhhC------CEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHH
Confidence 346777776665442 368899999999875311 1 11111 1222346
Q ss_pred cccccceeEEEEcC
Q 028494 54 NYPEKTETYYIVNA 67 (208)
Q Consensus 54 ~YPerl~~i~iVNa 67 (208)
.||++++++.++++
T Consensus 113 ~~p~~v~~lil~~~ 126 (295)
T PRK03592 113 RHPDRVRGIAFMEA 126 (295)
T ss_pred hChhheeEEEEECC
Confidence 88999999999996
No 18
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=24.14 E-value=2.8e+02 Score=24.97 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=42.2
Q ss_pred hhHHHhhhHhhHHhcCCccccEEEEEECCCCCcCCCcc------h----HHHHHH--------------------HHhhh
Q 028494 3 EYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ------I----KLMTVI--------------------TTIDD 52 (208)
Q Consensus 3 ey~~r~~l~~~s~~~g~~i~~~v~IiDl~G~sl~~l~~------i----~~~k~~--------------------~~i~q 52 (208)
-|.||.+++..+.+. --++-+|+.|++.+.... + ..+..+ .--+.
T Consensus 57 wyswr~q~~~la~~~-----~rviA~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~lld~Lg~~k~~lvgHDwGaivaw~la 131 (322)
T KOG4178|consen 57 WYSWRHQIPGLASRG-----YRVIAPDLRGYGFSDAPPHISEYTIDELVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLA 131 (322)
T ss_pred chhhhhhhhhhhhcc-----eEEEecCCCCCCCCCCCCCcceeeHHHHHHHHHHHHHHhccceeEEEeccchhHHHHHHH
Confidence 388999998876431 246688999999875431 1 111111 12235
Q ss_pred ccccccceeEEEEcCchH
Q 028494 53 LNYPEKTETYYIVNAPYI 70 (208)
Q Consensus 53 ~~YPerl~~i~iVNaP~~ 70 (208)
..||+|+..++.+|.|..
T Consensus 132 ~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 132 LFYPERVDGLVTLNVPFP 149 (322)
T ss_pred HhChhhcceEEEecCCCC
Confidence 689999999999999887
No 19
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=22.83 E-value=3.3e+02 Score=23.55 Aligned_cols=85 Identities=15% Similarity=0.303 Sum_probs=50.0
Q ss_pred cccEEEEEECCCCC--cCCCcchHHHHHHHHhhhccccccceeEEEEcCc------hHHHHHHHHHhhccccc-----cc
Q 028494 21 IGTSLKVLDMTGLK--LSALNQIKLMTVITTIDDLNYPEKTETYYIVNAP------YIFSACWKVVKPLLQER-----TR 87 (208)
Q Consensus 21 i~~~v~IiDl~G~s--l~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP------~~f~~~w~ivkpfL~~k-----t~ 87 (208)
++.--+|+||-|-= ..|+ .++++++.-++. .=.++..+|++.++ ++|+.+++.+..++.-. ..
T Consensus 96 ~eddylifDcPGQIELytH~---pVm~~iv~hl~~-~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvl 171 (273)
T KOG1534|consen 96 VEDDYLIFDCPGQIELYTHL---PVMPQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVL 171 (273)
T ss_pred ccCCEEEEeCCCeeEEeecC---hhHHHHHHHHhc-ccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 46667899998852 3454 466777766665 23455666665555 56777776666554332 23
Q ss_pred cceEEccCCChhHHHhhCCCCC
Q 028494 88 RKMQVLQGNGRDELLKIMDYAS 109 (208)
Q Consensus 88 ~KI~~~~~~~~~~L~k~id~~~ 109 (208)
+|.-.+++..+++|.++.+|+.
T Consensus 172 sKMDLlk~~~k~~l~~Fl~~d~ 193 (273)
T KOG1534|consen 172 SKMDLLKDKNKKELERFLNPDE 193 (273)
T ss_pred hHHHHhhhhhHHHHHHhcCCch
Confidence 4444444445566666666553
No 20
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=22.76 E-value=49 Score=26.50 Aligned_cols=69 Identities=20% Similarity=0.350 Sum_probs=50.1
Q ss_pred HHHHHHHhhhccccccce--eEEEEcCchHHHHHHHHHhhcccc--ccccceEEc--------c--CC---ChhHHHhhC
Q 028494 43 LMTVITTIDDLNYPEKTE--TYYIVNAPYIFSACWKVVKPLLQE--RTRRKMQVL--------Q--GN---GRDELLKIM 105 (208)
Q Consensus 43 ~~k~~~~i~q~~YPerl~--~i~iVNaP~~f~~~w~ivkpfL~~--kt~~KI~~~--------~--~~---~~~~L~k~i 105 (208)
-.+.++..+..+||.-++ ..-++|+.-.|..+|+-+ |-++. +-|+-|+.- . .+ -.++|.+.|
T Consensus 16 ~y~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLYAYv-P~~s~~~kERKQIRLs~dcI~kL~~nT~NdfKLY~Elf~~i 94 (159)
T PF04838_consen 16 DYKELIDFLITNYPKNVKNKTFNFANTGHLFHSLYAYV-PSVSNVEKERKQIRLSEDCIEKLFVNTINDFKLYEELFDMI 94 (159)
T ss_pred CHHHHHHHHHhhcccccccCeeecCCCchhhhhhhhcc-CCCchHhHHHHHhhhhHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 356688889999999998 999999999999999876 66666 666667761 1 01 236677777
Q ss_pred CCCCccc
Q 028494 106 DYASLPH 112 (208)
Q Consensus 106 d~~~LP~ 112 (208)
+.+.+..
T Consensus 95 ~~~~~~~ 101 (159)
T PF04838_consen 95 DDNKLKE 101 (159)
T ss_pred HccCCCC
Confidence 7544433
No 21
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=21.15 E-value=1.5e+02 Score=21.34 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=33.2
Q ss_pred EEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHH
Q 028494 24 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKV 77 (208)
Q Consensus 24 ~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~i 77 (208)
-.+|+||+++..-....+..+..+.+.++ .+=..++++|.+.-..-.+..
T Consensus 49 ~~vIlD~s~v~~iDssgi~~L~~~~~~~~----~~g~~~~l~~~~~~v~~~l~~ 98 (117)
T PF01740_consen 49 KNVILDMSGVSFIDSSGIQALVDIIKELR----RRGVQLVLVGLNPDVRRILER 98 (117)
T ss_dssp SEEEEEETTESEESHHHHHHHHHHHHHHH----HTTCEEEEESHHHHHHHHHHH
T ss_pred eEEEEEEEeCCcCCHHHHHHHHHHHHHHH----HCCCEEEEEECCHHHHHHHHH
Confidence 56799999996544433455555554444 466889999998776666543
No 22
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=20.66 E-value=2.8e+02 Score=18.71 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=27.0
Q ss_pred EEEECCCCCcCCCcchHHHHHHHHhhhcccc--ccceeEEEEcCchHHHHH
Q 028494 26 KVLDMTGLKLSALNQIKLMTVITTIDDLNYP--EKTETYYIVNAPYIFSAC 74 (208)
Q Consensus 26 ~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YP--erl~~i~iVNaP~~f~~~ 74 (208)
+++|++|+..-. -+++-.++.-+...|+ +.-.++.++|+......+
T Consensus 20 V~lDF~gv~~~~---ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~ 67 (74)
T PF14213_consen 20 VVLDFEGVESIT---SSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEM 67 (74)
T ss_pred EEEECCCccccc---HHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHH
Confidence 789999994321 1344444444444555 445677788876655443
Done!