Query 028494
Match_columns 208
No_of_seqs 272 out of 1178
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 20:37:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 1.4E-33 4.7E-38 253.7 11.5 169 10-187 135-310 (403)
2 1aua_A Phosphatidylinositol tr 100.0 2.5E-29 8.5E-34 217.2 10.9 133 3-141 149-283 (296)
3 3q8g_A CRAL-TRIO domain-contai 99.9 2.5E-28 8.5E-33 214.4 8.1 128 3-136 164-292 (320)
4 1r5l_A Alpha-TTP, protein (alp 99.9 7.1E-26 2.4E-30 191.4 6.8 99 20-123 134-234 (262)
5 3hx3_A Retinaldehyde-binding p 99.9 3.8E-25 1.3E-29 193.5 6.2 103 17-124 190-294 (316)
6 3pg7_A Neurofibromin; SEC lipi 98.4 3.9E-07 1.3E-11 77.3 7.0 102 4-110 42-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.0 5.2E-06 1.8E-10 71.6 5.2 86 22-109 76-162 (290)
8 2q3l_A Uncharacterized protein 25.7 1.6E+02 0.0054 21.0 5.8 69 9-85 38-111 (126)
9 2kln_A Probable sulphate-trans 24.4 1.8E+02 0.0063 20.2 6.2 51 24-78 49-99 (130)
10 2ka5_A Putative anti-sigma fac 24.2 1.6E+02 0.0055 20.6 5.5 51 25-79 54-104 (125)
11 3sbx_A Putative uncharacterize 24.0 91 0.0031 24.4 4.4 46 60-107 139-189 (189)
12 3llo_A Prestin; STAS domain, c 22.9 2E+02 0.0069 20.3 6.0 51 25-79 66-116 (143)
13 1sbo_A Putative anti-sigma fac 22.6 1.7E+02 0.0059 19.2 5.9 50 25-78 46-95 (110)
14 2oo3_A Protein involved in cat 22.5 40 0.0014 28.4 2.1 32 55-86 233-264 (283)
15 4dgh_A Sulfate permease family 21.5 2.1E+02 0.0072 19.9 6.0 51 24-78 50-100 (130)
16 4dgf_A Sulfate transporter sul 21.4 2.2E+02 0.0074 20.1 5.9 51 24-78 53-103 (135)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.4e-33 Score=253.71 Aligned_cols=169 Identities=26% Similarity=0.411 Sum_probs=147.8
Q ss_pred hHhhHHhcCCccccEEEEEECCCCCcCCCcc--hHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhccccccc
Q 028494 10 LPSASKKHGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTR 87 (208)
Q Consensus 10 l~~~s~~~g~~i~~~v~IiDl~G~sl~~l~~--i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpfL~~kt~ 87 (208)
++.++++.|++++++++|+||+|++++++++ +++++.++.++|++||||++++||||+|++|+++|+++||||+++|+
T Consensus 135 ~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~ 214 (403)
T 1olm_A 135 CAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTR 214 (403)
T ss_dssp HHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHH
T ss_pred HHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhh
Confidence 4566777899999999999999999999874 57899999999999999999999999999999999999999999999
Q ss_pred cceEEccCCChhHHHhhCCCCCcccccccCCCCccccCCCCCCCCcccC---CCcchHHHHHHHhhhcc--cceeeeeeC
Q 028494 88 RKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSL---DHAFHQRLYNYIKQQAV--LTESVVPIR 162 (208)
Q Consensus 88 ~KI~~~~~~~~~~L~k~id~~~LP~~~gge~GG~~~~~~~~~~~~c~~~---~~~~p~~~y~~i~~~~~--~~~~~~~~~ 162 (208)
+||+|+++++.++|.++||+++||++| ||++++ |++++.|.+. +|++|+++| +.+... ..++++|.+
T Consensus 215 ~KI~~~~~~~~~~L~~~I~~~~LP~~y----GG~~~~--~~~~~~c~~~i~~gg~vp~~~~--~~~~~~~~~~~~~~V~~ 286 (403)
T 1olm_A 215 KKIMVLGANWKEVLLKHISPDQVPVEY----GGTMTD--PDGNPKCKSKINYGGDIPRKYY--VRDQVKQQYEHSVQISR 286 (403)
T ss_dssp HTEEECCTTHHHHHTTTSCGGGSBGGG----TSSBCC--TTCCTTCTTTCBCCCCCCGGGC--SCSSCCCCCSEEEEECT
T ss_pred ceEEEEChhHHHHHHhhcChhhCchhh----CCCcCC--CCCCcccccccccCCCCCcccc--cCCCcccccceEEEEcC
Confidence 999999876678999999999999999 999999 6899999975 899999999 665422 235699999
Q ss_pred CCceEEeccCCCCcchHHHHHhhhh
Q 028494 163 QGSFHVDFPEPDPEGAKITKKIESE 187 (208)
Q Consensus 163 ~~~~~v~~~~~~~~~~~~~~~~~~~ 187 (208)
|++++|++++..+ +..+.|.+.++
T Consensus 287 g~~~~v~~~v~~~-g~~l~W~f~~~ 310 (403)
T 1olm_A 287 GSSHQVEYEILFP-GCVLRWQFMSD 310 (403)
T ss_dssp TCEEEEEEEECST-TCEEEEEEEES
T ss_pred CCEEEEEEEEcCC-CCEEEEEEEec
Confidence 9999999998743 44455666554
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.96 E-value=2.5e-29 Score=217.18 Aligned_cols=133 Identities=26% Similarity=0.434 Sum_probs=116.7
Q ss_pred hhHHHhhhHhhHHhcCCccccEEEEEECCCCCcCCCcc-hHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhc
Q 028494 3 EYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPL 81 (208)
Q Consensus 3 ey~~r~~l~~~s~~~g~~i~~~v~IiDl~G~sl~~l~~-i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpf 81 (208)
|.+.+..++.|++..|.+++++++|+||+|++++|+++ +++++.++.++|++||||++++||||+|++|+++|+++|||
T Consensus 149 E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpf 228 (296)
T 1aua_A 149 ESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPF 228 (296)
T ss_dssp HHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhh
Confidence 44555667888999999999999999999999999875 47889999999999999999999999999999999999999
Q ss_pred cccccccceEEccCCChhHHHhhCCCCCcccccccCCCCccccCCCCCCCCcccC-CCcch
Q 028494 82 LQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSL-DHAFH 141 (208)
Q Consensus 82 L~~kt~~KI~~~~~~~~~~L~k~id~~~LP~~~gge~GG~~~~~~~~~~~~c~~~-~~~~p 141 (208)
|+++|++||+|+++++.++|.++||+++||++| ||++++. +...+|... -||..
T Consensus 229 l~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~y----GG~~~~~--~~~~g~~~~~~~~w~ 283 (296)
T 1aua_A 229 LDPVTVSKIFILGSSYQKELLKQIPAENLPVKF----GGKSEVD--ESKGGLYLSDIGPWR 283 (296)
T ss_dssp SCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGG----TSCBCCC--GGGCCSTTCCCSGGG
T ss_pred cCHhhcceEEEeCcccHHHHHhhCCHhhCcHHh----CCCCCCC--CCCCCceeCCCCCCC
Confidence 999999999999977789999999999999999 9999884 323457654 35443
No 3
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.95 E-value=2.5e-28 Score=214.37 Aligned_cols=128 Identities=30% Similarity=0.493 Sum_probs=114.5
Q ss_pred hhHHHhhhHhhHHhcCCccccEEEEEECCCCCcCCCcc-hHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhc
Q 028494 3 EYRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQ-IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPL 81 (208)
Q Consensus 3 ey~~r~~l~~~s~~~g~~i~~~v~IiDl~G~sl~~l~~-i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpf 81 (208)
|...+..+++|++..|..++++++|+||+|++++++++ +++++.++.++|++||+|++++||||+|++|+++|+++|||
T Consensus 164 E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpf 243 (320)
T 3q8g_A 164 ELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPF 243 (320)
T ss_dssp HHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGG
T ss_pred HHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHh
Confidence 44455567889999999999999999999999999875 57889999999999999999999999999999999999999
Q ss_pred cccccccceEEccCCChhHHHhhCCCCCcccccccCCCCccccCCCCCCCCcccC
Q 028494 82 LQERTRRKMQVLQGNGRDELLKIMDYASLPHFCRKEGSGSSRHIGNGTTENCFSL 136 (208)
Q Consensus 82 L~~kt~~KI~~~~~~~~~~L~k~id~~~LP~~~gge~GG~~~~~~~~~~~~c~~~ 136 (208)
|+++|++||+|+++++.++|.++||+++||++| ||++++. +..++|...
T Consensus 244 l~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~y----GG~~~~~--~~~ggc~~~ 292 (320)
T 3q8g_A 244 LDPVTVSKIFILGSSYKKELLKQIPIENLPVKY----GGTSVLH--NPNDKFYYS 292 (320)
T ss_dssp SCHHHHHTEEECCTTHHHHHHHHSCGGGSBGGG----TSCBCCS--STTSCGGGB
T ss_pred CCHHHhhhEEEeCCCcHHHHHhhCChhhCChhh----CCCCCCC--CCCCCeecC
Confidence 999999999999876678999999999999999 9999884 444568643
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.92 E-value=7.1e-26 Score=191.42 Aligned_cols=99 Identities=22% Similarity=0.366 Sum_probs=92.3
Q ss_pred ccccEEEEEECCCCCcCCCcc--hHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhccccccccceEEccCCC
Q 028494 20 YIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQGNG 97 (208)
Q Consensus 20 ~i~~~v~IiDl~G~sl~~l~~--i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpfL~~kt~~KI~~~~~~~ 97 (208)
++.|+++|+|++|++++|+++ +++++.++.++|++||||++++||||+|++|+++|+++||||+++|++||+|+++++
T Consensus 134 ~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~ 213 (262)
T 1r5l_A 134 QRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNY 213 (262)
T ss_dssp HHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSC
T ss_pred cccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCc
Confidence 568999999999999999854 578999999999999999999999999999999999999999999999999998777
Q ss_pred hhHHHhhCCCCCcccccccCCCCccc
Q 028494 98 RDELLKIMDYASLPHFCRKEGSGSSR 123 (208)
Q Consensus 98 ~~~L~k~id~~~LP~~~gge~GG~~~ 123 (208)
.++|.++|| ++||++| ||++.
T Consensus 214 ~~~L~~~i~-~~LP~~y----GG~~~ 234 (262)
T 1r5l_A 214 KQSLLQHFP-DILPLEY----GGEEF 234 (262)
T ss_dssp HHHHHHHST-TTSCGGG----TCSSC
T ss_pred HHHHHHHhh-hhCcHhh----CCCCC
Confidence 899999999 9999999 77654
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.91 E-value=3.8e-25 Score=193.53 Aligned_cols=103 Identities=15% Similarity=0.267 Sum_probs=94.7
Q ss_pred cCCccccEEEEEECCCCCcCCCcc--hHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhccccccccceEEcc
Q 028494 17 HGRYIGTSLKVLDMTGLKLSALNQ--IKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQERTRRKMQVLQ 94 (208)
Q Consensus 17 ~g~~i~~~v~IiDl~G~sl~~l~~--i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpfL~~kt~~KI~~~~ 94 (208)
.+.+++|+++|+||+|++++|+++ .+.++.++.++|++||+|++++||||+|++|.++|+++||||+++|++||+|++
T Consensus 190 ~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~ 269 (316)
T 3hx3_A 190 EETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG 269 (316)
T ss_dssp HHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEE
T ss_pred ccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeC
Confidence 345789999999999999999753 478999999999999999999999999999999999999999999999999997
Q ss_pred CCChhHHHhhCCCCCcccccccCCCCcccc
Q 028494 95 GNGRDELLKIMDYASLPHFCRKEGSGSSRH 124 (208)
Q Consensus 95 ~~~~~~L~k~id~~~LP~~~gge~GG~~~~ 124 (208)
++ .++|.++||+++||++| ||++++
T Consensus 270 ~~-~~~L~~~I~~~~LP~ey----GG~~~~ 294 (316)
T 3hx3_A 270 DD-LSGFYQEIDENILPSDF----GGTLPK 294 (316)
T ss_dssp TC-CHHHHHHSCGGGSBGGG----TSSBCC
T ss_pred CC-HHHHHhhCCHhhCcHhh----CCCCCC
Confidence 54 57999999999999999 888875
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=98.42 E-value=3.9e-07 Score=77.28 Aligned_cols=102 Identities=12% Similarity=-0.001 Sum_probs=81.9
Q ss_pred hHHHhhhHhhHHhcCCccccEEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHH-hhcc
Q 028494 4 YRDRVVLPSASKKHGRYIGTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV-KPLL 82 (208)
Q Consensus 4 y~~r~~l~~~s~~~g~~i~~~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~iv-kpfL 82 (208)
.+..+++...++--. ..+.+|+|+.|++..+..+++.++.+..++...|...++++||+|++++|...|+.+ ++|.
T Consensus 42 ~Ll~~vl~tl~~~~~---~~y~lV~d~T~~~~~n~p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~ 118 (256)
T 3pg7_A 42 LLIYHVLLTLKPYYA---KPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLT 118 (256)
T ss_dssp HHHHHHHHHHTTTTT---SCEEEEEECTTCCGGGCCCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHhcC---CCeEEEEECCCCCcccCCcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhcccc
Confidence 334444544442222 468999999999998877788999999999999999999999999999999776654 6677
Q ss_pred ccccccceEEccCCChhHHHhhCCCCCc
Q 028494 83 QERTRRKMQVLQGNGRDELLKIMDYASL 110 (208)
Q Consensus 83 ~~kt~~KI~~~~~~~~~~L~k~id~~~L 110 (208)
+.+..+|+++++ ..++|.++|+.++|
T Consensus 119 ~~k~~~Ki~fv~--sl~eL~~~i~~~~L 144 (256)
T 3pg7_A 119 GLKGSKRLVFID--CPGKLAEHIEHEQQ 144 (256)
T ss_dssp TTTTCTTEEEES--STTGGGGTSCGGGC
T ss_pred ccccCCcEEEEC--CHHHHHhhcCHHHc
Confidence 668889999997 48899999987765
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.00 E-value=5.2e-06 Score=71.65 Aligned_cols=86 Identities=10% Similarity=0.015 Sum_probs=67.3
Q ss_pred ccEEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHH-HHHhhccccccccceEEccCCChhH
Q 028494 22 GTSLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACW-KVVKPLLQERTRRKMQVLQGNGRDE 100 (208)
Q Consensus 22 ~~~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w-~ivkpfL~~kt~~KI~~~~~~~~~~ 100 (208)
..+.+|+|+++++..+-.+.+.++.+..++...|+..++++|++|++.+|...+ ...++|...+..+|+.+++. ...
T Consensus 76 ~~y~lV~D~T~~~~~n~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~--~~~ 153 (290)
T 3peg_A 76 KPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGK 153 (290)
T ss_dssp SCEEEEEECTTCCGGGCCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS--SCC
T ss_pred CCeEEEEEcCCCCccCCChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC--HHH
Confidence 468999999999998777788999999999999999999999999999999855 46788888899999999864 455
Q ss_pred HHhhCCCCC
Q 028494 101 LLKIMDYAS 109 (208)
Q Consensus 101 L~k~id~~~ 109 (208)
|..++++++
T Consensus 154 L~~~i~~~~ 162 (290)
T 3peg_A 154 LAEHIEHEQ 162 (290)
T ss_dssp ---------
T ss_pred HHhhCCHHH
Confidence 888888775
No 8
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=25.65 E-value=1.6e+02 Score=21.01 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=42.2
Q ss_pred hhHhhHHhcCCcccc--EEEEEE---CCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHhhccc
Q 028494 9 VLPSASKKHGRYIGT--SLKVLD---MTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVKPLLQ 83 (208)
Q Consensus 9 ~l~~~s~~~g~~i~~--~v~IiD---l~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivkpfL~ 83 (208)
+.|....+.... .. +.+++| +.|+++..+| .-++ .-..+ -....++-||-.+.|...+-++.++|++
T Consensus 38 l~~~l~~~l~~~-~~~~i~ll~~~~~f~G~~~~a~~--~d~k----~~~~h-~~~~~RiAvV~d~~W~~~~~~~~~~~~~ 109 (126)
T 2q3l_A 38 MTPLLESALAGI-KTPEIVALIDITELDGLSLHAAW--DDLK----LGLKH-GKEFKRVAIIGQGELQEWATRVANWFTP 109 (126)
T ss_dssp HHHHHHHHTTTC-CSSCEEEEEEEEEEEEECHHHHH--HHHH----HHHHH-GGGEEEEEEECCSHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhC-CCceEEEEEEecCCCCCCHHHHH--HHHH----hhhhH-HhcCCEEEEEcChHHHHHHHHHHhhccC
Confidence 455555444432 23 555555 4555544443 2222 11123 3678999999999999999999999977
Q ss_pred cc
Q 028494 84 ER 85 (208)
Q Consensus 84 ~k 85 (208)
-.
T Consensus 110 ~e 111 (126)
T 2q3l_A 110 GE 111 (126)
T ss_dssp SE
T ss_pred Cc
Confidence 53
No 9
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=24.45 E-value=1.8e+02 Score=20.25 Aligned_cols=51 Identities=8% Similarity=0.015 Sum_probs=34.6
Q ss_pred EEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHH
Q 028494 24 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 78 (208)
Q Consensus 24 ~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~iv 78 (208)
-.+|+||++++.-....+..+..+.+-++ .+=..++++|.+.-+.-++...
T Consensus 49 ~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 99 (130)
T 2kln_A 49 EWFVLNAESNVEVDLTALDALDQLRTELL----RRGIVFAMARVKQDLRESLRAA 99 (130)
T ss_dssp EEEEEECSCCSSSBCSTTTHHHHHHHHHH----TTTEEEEEECCSSHHHHHHHHC
T ss_pred eEEEEECCCCChhhHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHHc
Confidence 46899999998765555666666555444 3447788999887666665543
No 10
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=24.16 E-value=1.6e+02 Score=20.56 Aligned_cols=51 Identities=6% Similarity=-0.003 Sum_probs=34.8
Q ss_pred EEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHh
Q 028494 25 LKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 79 (208)
Q Consensus 25 v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivk 79 (208)
.+|+||++++.-.-..+..+..+.+.++ .+=..+.++|++.-+.-++.+..
T Consensus 54 ~vvlDls~V~~iDSsGl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 104 (125)
T 2ka5_A 54 KIFLVLSDVESIDSFSLGVIVNILKSIS----SSGGFFALVSPNEKVERVLSLTN 104 (125)
T ss_dssp EEEEECTTCSCCCHHHHHHHHHHHHHHH----HHTCEEEEECCCHHHHHHHHHTT
T ss_pred EEEEECCCCCEEcHHHHHHHHHHHHHHH----HcCCEEEEEeCCHHHHHHHHHcC
Confidence 5799999998765444555555444443 33478899999888777777653
No 11
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=23.95 E-value=91 Score=24.45 Aligned_cols=46 Identities=9% Similarity=0.113 Sum_probs=34.9
Q ss_pred eeEEEEcCchHHHHHHHHHh-----hccccccccceEEccCCChhHHHhhCCC
Q 028494 60 ETYYIVNAPYIFSACWKVVK-----PLLQERTRRKMQVLQGNGRDELLKIMDY 107 (208)
Q Consensus 60 ~~i~iVNaP~~f~~~w~ivk-----pfL~~kt~~KI~~~~~~~~~~L~k~id~ 107 (208)
+-++++|..-++.-++.+++ -|++++.++.+.+.. +.+++.+++.|
T Consensus 139 kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d--~~ee~~~~l~~ 189 (189)
T 3sbx_A 139 KSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVD--NLDDALQACAP 189 (189)
T ss_dssp CCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEES--SHHHHHHHHCC
T ss_pred CCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeC--CHHHHHHHhcC
Confidence 57899998766666665543 488888899999986 48888887754
No 12
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=22.88 E-value=2e+02 Score=20.29 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=34.2
Q ss_pred EEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHHh
Q 028494 25 LKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVVK 79 (208)
Q Consensus 25 v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~ivk 79 (208)
.+|+||++++.-....+..+..+.+-++ .+=..++++|++.-..-++....
T Consensus 66 ~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~g 116 (143)
T 3llo_A 66 TVILDFTQVNFMDSVGVKTLAGIVKEYG----DVGIYVYLAGCSAQVVNDLTSNR 116 (143)
T ss_dssp EEEEECTTCCCCCHHHHHHHHHHHHHHH----TTTCEEEEESCCHHHHHHHHHTT
T ss_pred EEEEECCCCccccHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHhCC
Confidence 5899999987655444555555554433 45578999998877666665543
No 13
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=22.55 E-value=1.7e+02 Score=19.24 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=32.1
Q ss_pred EEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHH
Q 028494 25 LKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 78 (208)
Q Consensus 25 v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~iv 78 (208)
.+|+|+++++.-.-..+..+..+.+-++. +=..+.++|++.-+.-++.+.
T Consensus 46 ~vvlDls~v~~iDssgl~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~~~ 95 (110)
T 1sbo_A 46 KIVLDLSSVSYMDSAGLGTLVVILKDAKI----NGKEFILSSLKESISRILKLT 95 (110)
T ss_dssp EEEEECTTCCCBCHHHHHHHHHHHHHHHH----TTCEEEEESCCHHHHHHHHHT
T ss_pred EEEEECCCCcEEccHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHHHHHh
Confidence 45899999876554434555554443332 336788899887777666654
No 14
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=22.47 E-value=40 Score=28.42 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=24.4
Q ss_pred ccccceeEEEEcCchHHHHHHHHHhhcccccc
Q 028494 55 YPEKTETYYIVNAPYIFSACWKVVKPLLQERT 86 (208)
Q Consensus 55 YPerl~~i~iVNaP~~f~~~w~ivkpfL~~kt 86 (208)
....=..++|||+||-+.-..+-+-|+|.+..
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l 264 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTYF 264 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHHS
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHHh
Confidence 33344679999999999988888877776643
No 15
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=21.49 E-value=2.1e+02 Score=19.89 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=33.8
Q ss_pred EEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHH
Q 028494 24 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 78 (208)
Q Consensus 24 ~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~iv 78 (208)
-.+|+||++++.-....+..+..+.+-++ .+=.++++++.+.-+.-++...
T Consensus 50 ~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 100 (130)
T 4dgh_A 50 QILILRLKWVPFMDITGIQTLEEMIQSFH----KRGIKVLISGANSRVSQKLVKA 100 (130)
T ss_dssp SEEEEECTTCCCCCHHHHHHHHHHHHHHH----TTTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCcccHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHHc
Confidence 35799999987655444555555554443 4557889999887766666544
No 16
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=21.42 E-value=2.2e+02 Score=20.07 Aligned_cols=51 Identities=4% Similarity=0.032 Sum_probs=33.9
Q ss_pred EEEEEECCCCCcCCCcchHHHHHHHHhhhccccccceeEEEEcCchHHHHHHHHH
Q 028494 24 SLKVLDMTGLKLSALNQIKLMTVITTIDDLNYPEKTETYYIVNAPYIFSACWKVV 78 (208)
Q Consensus 24 ~v~IiDl~G~sl~~l~~i~~~k~~~~i~q~~YPerl~~i~iVNaP~~f~~~w~iv 78 (208)
-.+|+||++++.-....+..+..+.+-++ .+=.++++++.+.-+.-++...
T Consensus 53 ~~vvlDls~v~~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~~ 103 (135)
T 4dgf_A 53 KVFILRMRRVPVIDATGMHALWEFQESCE----KRGTILLLSGVSDRLYGALNRF 103 (135)
T ss_dssp SEEEEECTTCSCBCHHHHHHHHHHHHHHH----HHTCEEEEESCCHHHHHHHHHH
T ss_pred cEEEEEcCCCCccCHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHHc
Confidence 36899999998655444555555544433 4557889999887666666544
Done!