BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028497
MESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQKSHDQVITTIEDALTLVSNSVRKVIL
DAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPS
TGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAV
VTSNPILFQRVMQDIRTQCLEEGFSLIR

High Scoring Gene Products

Symbol, full name Information P value
GDPD4
glycerophosphodiester phosphodiesterase 4
protein from Arabidopsis thaliana 1.8e-62
BA_0591
glycerophosphoryl diester phosphodiesterase family protein
protein from Bacillus anthracis str. Ames 8.4e-07

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028497
        (208 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2032323 - symbol:GDPD4 "glycerophosphodiester ...   638  1.8e-62   1
TIGR_CMR|BA_0591 - symbol:BA_0591 "glycerophosphoryl dies...   136  8.4e-07   1


>TAIR|locus:2032323 [details] [associations]
            symbol:GDPD4 "glycerophosphodiester phosphodiesterase 4"
            species:3702 "Arabidopsis thaliana" [GO:0005886 "plasma membrane"
            evidence=ISM] [GO:0006071 "glycerol metabolic process"
            evidence=IEA;ISS] [GO:0006629 "lipid metabolic process"
            evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
            evidence=IEA] [GO:0008889 "glycerophosphodiester phosphodiesterase
            activity" evidence=IEA;ISS] InterPro:IPR004129 InterPro:IPR017946
            Pfam:PF03009 EMBL:CP002684 Gene3D:3.20.20.190 SUPFAM:SSF51695
            GO:GO:0006629 GO:GO:0006071 GO:GO:0008889 PANTHER:PTHR23344
            UniGene:At.22241 IPI:IPI00539129 RefSeq:NP_177290.3
            ProteinModelPortal:F4I8H8 PRIDE:F4I8H8 EnsemblPlants:AT1G71340.1
            GeneID:843475 KEGG:ath:AT1G71340 OMA:DPSFHEA Uniprot:F4I8H8
        Length = 328

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 126/205 (61%), Positives = 158/205 (77%)

Query:    11 RDLQRISGNITSKVGHLSMKEFAQKSHDQV---------ITTIEDALTLVSNSVRKVILD 61
             RDLQRI+ N + +VG LSMK+  +    ++         I T+E+AL L+SNSVRKVILD
Sbjct:   122 RDLQRIARNSSVQVGDLSMKQIKELDVSEIVKGTLGSSRIPTLEEALALISNSVRKVILD 181

Query:    62 AKVGPPSYEKGLAKDILSVIERTKCYNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPST 121
             AKVGPP YEKGLA+DILS+IER +C NC+VWAKSD L RDI+R + +   GYI+MVDP T
Sbjct:   182 AKVGPPMYEKGLAQDILSIIERAQCNNCIVWAKSDTLARDIIRRAPDTMVGYIVMVDPLT 241

Query:   122 GFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVV 181
             G R +LLR++ A VVGVYHPLIDE+LVR    RNK V+AWTVDD D M++MLH  VDAVV
Sbjct:   242 GARNSLLRMKGARVVGVYHPLIDEELVRVVRRRNKEVYAWTVDDADPMKRMLHLGVDAVV 301

Query:   182 TSNPILFQRVMQDIRTQCLEEGFSL 206
             TS+P +FQ +M+D+RT+CLEEGFS+
Sbjct:   302 TSDPSMFQGLMEDLRTECLEEGFSI 326


>TIGR_CMR|BA_0591 [details] [associations]
            symbol:BA_0591 "glycerophosphoryl diester phosphodiesterase
            family protein" species:198094 "Bacillus anthracis str. Ames"
            [GO:0008889 "glycerophosphodiester phosphodiesterase activity"
            evidence=ISS] [GO:0009395 "phospholipid catabolic process"
            evidence=ISS] InterPro:IPR004129 InterPro:IPR017946 Pfam:PF03009
            EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
            GenomeReviews:AE017334_GR Gene3D:3.20.20.190 SUPFAM:SSF51695
            GO:GO:0006629 GO:GO:0006071 GO:GO:0008889 PANTHER:PTHR23344
            KO:K01126 HSSP:Q9X1V6 RefSeq:NP_843124.1 RefSeq:YP_017217.1
            ProteinModelPortal:Q81VA7 DNASU:1087942
            EnsemblBacteria:EBBACT00000008162 EnsemblBacteria:EBBACT00000017758
            GeneID:1087942 GeneID:2817484 KEGG:ban:BA_0591 KEGG:bar:GBAA_0591
            PATRIC:18778786 HOGENOM:HOG000083323 OMA:ISPLTIM
            ProtClustDB:CLSK915875 BioCyc:BANT261594:GJ7F-646-MONOMER
            InterPro:IPR018476 Pfam:PF10110 Uniprot:Q81VA7
        Length = 611

 Score = 136 (52.9 bits), Expect = 8.4e-07, P = 8.4e-07
 Identities = 46/196 (23%), Positives = 91/196 (46%)

Query:    13 LQRISGNITSKVGHLSMKEFAQKSHDQ-----VITTIEDALTLVSNSVRKVILDAKVGPP 67
             L+R++ N    V  L+M E  Q +  Q      I+T+++ + L    ++   L+ +V   
Sbjct:   400 LKRLA-NANVHVSDLTMDELRQLTLSQDGFSGQISTLDEIIKLAKGKIK---LNIEVKLH 455

Query:    68 SYEKGLAKDILSVIERTKCYN-CLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTN 126
               EK     +L  I+  +    C++      L+++  R + N+  GYI+        R +
Sbjct:   456 GGEKDFVNKVLKTIKDNEFEKQCVIQTLHYPLIKEFKRANPNIKVGYILYAS-----RAH 510

Query:   127 LLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPI 186
             L  + KA        ++++KLV+     NK ++ WTV+D +S++      VD ++T  P 
Sbjct:   511 LKNV-KADFYVAEEYMLNKKLVKEARKLNKPIYVWTVNDMESLKGYYKLNVDGIITDYPE 569

Query:   187 LFQRVMQDIRTQCLEE 202
               +  ++ ++ Q  EE
Sbjct:   570 DARETIKMLKEQEEEE 585


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      208       208   0.00077  112 3  11 22  0.45    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  166 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.39u 0.09s 19.48t   Elapsed:  00:00:01
  Total cpu time:  19.39u 0.09s 19.48t   Elapsed:  00:00:01
  Start:  Fri May 10 23:07:54 2013   End:  Fri May 10 23:07:55 2013

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