Query 028497
Match_columns 208
No_of_seqs 127 out of 1123
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 12:26:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08562 GDPD_EcUgpQ_like Glyce 100.0 1.1E-36 2.4E-41 241.0 20.4 180 2-185 39-229 (229)
2 PRK09454 ugpQ cytoplasmic glyc 100.0 1.7E-36 3.8E-41 242.7 20.5 187 2-192 48-246 (249)
3 cd08568 GDPD_TmGDE_like Glycer 100.0 1.1E-36 2.3E-41 240.8 18.6 177 2-187 40-225 (226)
4 cd08565 GDPD_pAtGDE_like Glyce 100.0 2.2E-36 4.7E-41 240.0 19.6 184 2-188 39-234 (235)
5 cd08582 GDPD_like_2 Glyceropho 100.0 3.4E-36 7.4E-41 238.9 20.3 182 2-186 39-232 (233)
6 cd08601 GDPD_SaGlpQ_like Glyce 100.0 5.4E-36 1.2E-40 240.9 20.9 187 2-192 41-255 (256)
7 cd08612 GDPD_GDE4 Glycerophosp 100.0 3.3E-36 7.1E-41 247.0 19.4 185 2-193 67-299 (300)
8 cd08581 GDPD_like_1 Glyceropho 100.0 5E-36 1.1E-40 237.1 19.4 177 2-185 39-229 (229)
9 cd08579 GDPD_memb_like Glycero 100.0 9E-36 1.9E-40 234.6 20.3 176 2-185 39-220 (220)
10 cd08563 GDPD_TtGDE_like Glycer 100.0 1.1E-35 2.4E-40 235.5 20.2 180 2-185 41-230 (230)
11 cd08580 GDPD_Rv2277c_like Glyc 100.0 5.9E-37 1.3E-41 245.8 12.7 181 2-188 41-263 (263)
12 cd08609 GDPD_GDE3 Glycerophosp 100.0 2.5E-35 5.4E-40 241.7 20.3 184 2-195 67-285 (315)
13 cd08610 GDPD_GDE6 Glycerophosp 100.0 1.2E-35 2.7E-40 243.4 18.1 186 2-194 63-284 (316)
14 cd08574 GDPD_GDE_2_3_6 Glycero 100.0 2.4E-35 5.2E-40 236.3 18.3 174 2-183 42-251 (252)
15 cd08573 GDPD_GDE1 Glycerophosp 100.0 7.4E-35 1.6E-39 234.1 19.0 177 2-184 39-257 (258)
16 cd08564 GDPD_GsGDE_like Glycer 100.0 9.5E-35 2.1E-39 234.7 19.7 185 2-192 46-264 (265)
17 cd08559 GDPD_periplasmic_GlpQ_ 100.0 6.7E-35 1.5E-39 238.8 15.8 183 2-185 41-296 (296)
18 cd08567 GDPD_SpGDE_like Glycer 100.0 5.1E-34 1.1E-38 230.2 19.4 185 2-187 41-263 (263)
19 cd08575 GDPD_GDE4_like Glycero 100.0 8.7E-35 1.9E-39 234.6 14.3 180 2-187 41-263 (264)
20 cd08605 GDPD_GDE5_like_1_plant 100.0 4.9E-34 1.1E-38 232.5 18.7 182 2-185 51-282 (282)
21 cd08608 GDPD_GDE2 Glycerophosp 100.0 6.2E-34 1.3E-38 235.8 19.5 184 2-194 42-262 (351)
22 cd08570 GDPD_YPL206cp_fungi Gl 100.0 9E-34 1.9E-38 225.1 18.8 178 2-185 39-234 (234)
23 cd08585 GDPD_like_3 Glyceropho 100.0 1.2E-33 2.6E-38 224.4 18.7 177 2-182 46-236 (237)
24 cd08561 GDPD_cytoplasmic_ScUgp 100.0 7.8E-34 1.7E-38 227.5 16.4 183 2-191 39-248 (249)
25 cd08606 GDPD_YPL110cp_fungi Gl 100.0 4.9E-33 1.1E-37 227.0 19.9 189 2-193 50-285 (286)
26 cd08583 PI-PLCc_GDPD_SF_unchar 100.0 8.6E-33 1.9E-37 219.9 20.4 185 2-186 41-236 (237)
27 cd08604 GDPD_SHV3_repeat_2 Gly 100.0 7.5E-33 1.6E-37 226.7 18.3 187 2-190 41-299 (300)
28 cd08566 GDPD_AtGDE_like Glycer 100.0 3.4E-32 7.4E-37 216.7 18.8 174 2-185 41-240 (240)
29 cd08571 GDPD_SHV3_plant Glycer 100.0 5.7E-33 1.2E-37 227.4 14.5 189 2-190 41-301 (302)
30 cd08600 GDPD_EcGlpQ_like Glyce 100.0 1.1E-32 2.5E-37 227.1 15.6 185 2-186 41-318 (318)
31 cd08572 GDPD_GDE5_like Glycero 100.0 3.2E-32 7E-37 222.4 17.7 182 2-185 48-293 (293)
32 PRK11143 glpQ glycerophosphodi 100.0 4.8E-32 1E-36 225.8 18.4 193 2-194 67-353 (355)
33 cd08607 GDPD_GDE5 Glycerophosp 100.0 7.3E-32 1.6E-36 220.6 19.0 183 2-185 47-290 (290)
34 cd08602 GDPD_ScGlpQ1_like Glyc 100.0 3.3E-31 7.1E-36 217.7 18.0 182 2-185 41-309 (309)
35 cd08560 GDPD_EcGlpQ_like_1 Gly 100.0 7.3E-30 1.6E-34 212.1 18.8 188 2-189 57-351 (356)
36 cd08613 GDPD_GDE4_like_1 Glyce 100.0 6E-28 1.3E-32 195.6 16.0 180 2-188 86-307 (309)
37 PF03009 GDPD: Glycerophosphor 100.0 1.7E-27 3.6E-32 190.2 16.8 185 2-187 36-256 (256)
38 cd08556 GDPD Glycerophosphodie 100.0 9.8E-27 2.1E-31 178.5 18.6 150 2-184 39-189 (189)
39 COG0584 UgpQ Glycerophosphoryl 99.9 9.1E-26 2E-30 181.5 17.7 190 2-193 46-255 (257)
40 cd08603 GDPD_SHV3_repeat_1 Gly 99.9 2.8E-25 6E-30 179.8 14.1 185 2-190 43-298 (299)
41 cd08555 PI-PLCc_GDPD_SF Cataly 99.9 4E-23 8.7E-28 157.7 14.7 129 2-184 39-179 (179)
42 cd08578 GDPD_NUC-2_fungi Putat 99.8 1.9E-18 4.2E-23 140.7 15.4 180 2-184 41-296 (300)
43 cd08584 PI-PLCc_GDPD_SF_unchar 99.6 4E-14 8.6E-19 107.5 13.8 149 2-187 29-191 (192)
44 cd08576 GDPD_like_SMaseD_PLD G 99.2 1.9E-09 4.1E-14 86.0 15.6 54 142-195 191-249 (265)
45 cd08577 PI-PLCc_GDPD_SF_unchar 99.1 5.1E-10 1.1E-14 88.3 11.0 167 2-184 34-228 (228)
46 PF13653 GDPD_2: Glycerophosph 99.1 1.6E-10 3.4E-15 60.9 3.3 30 157-186 1-30 (30)
47 KOG2258 Glycerophosphoryl dies 98.9 2.6E-09 5.6E-14 89.1 5.0 180 1-191 108-328 (341)
48 COG0134 TrpC Indole-3-glycerol 96.5 0.12 2.5E-06 41.4 12.8 152 26-184 18-184 (254)
49 TIGR01182 eda Entner-Doudoroff 96.2 0.25 5.5E-06 38.4 12.8 105 72-182 20-127 (204)
50 PRK06552 keto-hydroxyglutarate 95.7 0.68 1.5E-05 36.3 13.4 126 46-185 5-137 (213)
51 PRK05718 keto-hydroxyglutarate 95.6 0.8 1.7E-05 35.8 15.4 141 43-196 4-150 (212)
52 cd04726 KGPDC_HPS 3-Keto-L-gul 95.5 0.28 6.1E-06 37.7 10.7 88 95-183 40-133 (202)
53 COG2200 Rtn c-di-GMP phosphodi 95.1 0.84 1.8E-05 36.7 12.6 136 44-183 72-234 (256)
54 PLN02460 indole-3-glycerol-pho 95.0 0.99 2.2E-05 37.8 12.9 125 56-184 119-259 (338)
55 PF00218 IGPS: Indole-3-glycer 95.0 1.1 2.3E-05 36.2 12.6 151 27-184 19-186 (254)
56 PRK13957 indole-3-glycerol-pho 94.9 1.6 3.4E-05 35.0 14.0 133 44-185 32-180 (247)
57 cd00452 KDPG_aldolase KDPG and 94.9 0.93 2E-05 34.7 11.7 117 73-195 17-137 (190)
58 PRK07114 keto-hydroxyglutarate 94.8 1.5 3.2E-05 34.6 12.8 125 45-182 6-138 (222)
59 PF01081 Aldolase: KDPG and KH 94.6 0.53 1.2E-05 36.3 9.6 117 72-196 20-143 (196)
60 PRK06015 keto-hydroxyglutarate 94.6 0.9 2E-05 35.2 10.8 117 72-195 16-138 (201)
61 PF03060 NMO: Nitronate monoox 94.4 0.66 1.4E-05 38.8 10.5 49 133-182 114-162 (330)
62 TIGR03128 RuMP_HxlA 3-hexulose 94.3 1.7 3.6E-05 33.5 12.1 87 96-183 40-133 (206)
63 PRK00278 trpC indole-3-glycero 94.3 2.4 5.2E-05 34.2 15.3 151 26-184 22-188 (260)
64 PF10566 Glyco_hydro_97: Glyco 94.1 0.2 4.3E-06 40.7 6.7 59 145-203 76-150 (273)
65 cd04743 NPD_PKS 2-Nitropropane 93.6 0.94 2E-05 37.7 9.8 104 76-182 18-129 (320)
66 PF04309 G3P_antiterm: Glycero 93.2 0.53 1.1E-05 35.6 7.1 49 145-193 34-89 (175)
67 PF05913 DUF871: Bacterial pro 93.1 1.8 3.9E-05 36.7 10.9 155 39-198 44-235 (357)
68 PRK13802 bifunctional indole-3 93.1 3.5 7.6E-05 38.1 13.4 123 56-183 50-187 (695)
69 PF04309 G3P_antiterm: Glycero 92.9 0.36 7.8E-06 36.6 5.8 145 38-188 27-174 (175)
70 COG0800 Eda 2-keto-3-deoxy-6-p 92.4 2.9 6.4E-05 32.6 10.3 103 72-180 25-130 (211)
71 COG1954 GlpP Glycerol-3-phosph 91.9 4.3 9.3E-05 30.6 10.9 144 39-188 32-178 (181)
72 PRK07455 keto-hydroxyglutarate 91.8 4.7 0.0001 30.8 14.6 129 46-187 4-135 (187)
73 PRK11059 regulatory protein Cs 91.3 7.1 0.00015 35.7 13.4 111 71-184 498-632 (640)
74 COG0269 SgbH 3-hexulose-6-phos 90.8 4.9 0.00011 31.5 10.1 95 94-189 42-143 (217)
75 TIGR03151 enACPred_II putative 90.7 2.8 6.1E-05 34.7 9.3 104 76-182 26-135 (307)
76 PRK10060 RNase II stability mo 90.6 10 0.00022 34.9 13.7 132 57-192 494-651 (663)
77 COG3010 NanE Putative N-acetyl 90.1 5.4 0.00012 31.0 9.6 155 38-198 49-228 (229)
78 cd02809 alpha_hydroxyacid_oxid 89.8 10 0.00022 31.2 12.1 107 74-182 83-199 (299)
79 cd00331 IGPS Indole-3-glycerol 89.5 8.5 0.00018 29.9 13.6 124 56-183 11-148 (217)
80 TIGR01768 GGGP-family geranylg 89.4 4.3 9.2E-05 32.1 8.9 62 130-191 147-221 (223)
81 cd00381 IMPDH IMPDH: The catal 89.0 8.6 0.00019 32.1 11.0 107 75-182 48-162 (325)
82 cd04729 NanE N-acetylmannosami 88.8 9.6 0.00021 29.7 13.3 108 72-183 27-150 (219)
83 cd02812 PcrB_like PcrB_like pr 88.0 9.7 0.00021 30.0 10.1 62 130-191 146-217 (219)
84 cd00956 Transaldolase_FSA Tran 87.8 11 0.00025 29.3 13.4 133 43-183 38-185 (211)
85 PRK09722 allulose-6-phosphate 87.2 7.8 0.00017 30.7 9.2 84 92-179 44-133 (229)
86 COG3589 Uncharacterized conser 86.6 7.9 0.00017 32.4 9.1 162 40-206 47-248 (360)
87 PLN02591 tryptophan synthase 86.6 14 0.00029 29.8 10.4 39 145-183 178-218 (250)
88 PF00563 EAL: EAL domain; Int 86.6 1.6 3.4E-05 33.9 5.1 125 56-184 88-232 (236)
89 PF04413 Glycos_transf_N: 3-De 86.5 8 0.00017 29.5 8.7 68 89-160 53-123 (186)
90 PRK12331 oxaloacetate decarbox 85.9 24 0.00051 31.0 14.4 103 96-198 63-195 (448)
91 cd04728 ThiG Thiazole synthase 85.8 3.1 6.7E-05 33.2 6.2 37 146-182 111-150 (248)
92 PRK09427 bifunctional indole-3 85.5 17 0.00036 32.0 11.1 148 27-184 25-187 (454)
93 TIGR01769 GGGP geranylgeranylg 85.5 4.9 0.00011 31.3 7.1 54 129-182 144-204 (205)
94 TIGR01108 oadA oxaloacetate de 85.4 29 0.00062 31.6 13.6 103 96-198 58-190 (582)
95 PRK09140 2-dehydro-3-deoxy-6-p 85.4 15 0.00033 28.5 13.5 107 72-185 22-132 (206)
96 COG0826 Collagenase and relate 84.9 3 6.4E-05 35.2 6.1 46 145-190 52-106 (347)
97 PRK08883 ribulose-phosphate 3- 84.6 9.1 0.0002 30.1 8.4 85 92-179 42-131 (220)
98 PRK13561 putative diguanylate 84.1 29 0.00063 31.6 12.7 122 71-195 500-647 (651)
99 PRK01130 N-acetylmannosamine-6 84.1 18 0.00039 28.2 14.6 108 72-183 23-146 (221)
100 PRK00208 thiG thiazole synthas 84.0 4.1 8.9E-05 32.6 6.2 37 146-182 111-150 (250)
101 KOG4201 Anthranilate synthase 83.7 2.3 5E-05 33.3 4.5 159 24-185 37-215 (289)
102 cd00405 PRAI Phosphoribosylant 83.1 7.9 0.00017 29.8 7.5 88 96-186 37-130 (203)
103 PRK08745 ribulose-phosphate 3- 82.9 11 0.00024 29.7 8.3 92 92-186 46-144 (223)
104 PRK08005 epimerase; Validated 82.1 13 0.00028 29.1 8.2 84 92-179 43-131 (210)
105 PRK11829 biofilm formation reg 81.7 39 0.00084 30.8 12.5 135 57-195 492-652 (660)
106 PRK09776 putative diguanylate 81.6 46 0.001 32.2 13.5 133 57-193 927-1085(1092)
107 TIGR01302 IMP_dehydrog inosine 81.5 20 0.00043 31.4 10.1 106 74-183 226-356 (450)
108 TIGR01064 pyruv_kin pyruvate k 81.4 28 0.0006 30.8 10.9 58 143-200 258-335 (473)
109 cd01948 EAL EAL domain. This d 81.2 23 0.0005 27.3 12.1 125 57-184 85-231 (240)
110 cd08592 PI-PLCc_gamma Catalyti 81.2 5.4 0.00012 31.6 5.9 39 2-65 55-100 (229)
111 PRK08195 4-hyroxy-2-oxovalerat 81.2 32 0.00069 28.9 14.8 101 96-198 65-185 (337)
112 PLN02334 ribulose-phosphate 3- 80.9 14 0.00031 29.0 8.3 85 93-180 51-143 (229)
113 PRK09283 delta-aminolevulinic 80.5 32 0.0007 28.7 10.2 62 131-192 240-322 (323)
114 PTZ00170 D-ribulose-5-phosphat 80.2 11 0.00024 29.7 7.4 80 92-173 49-134 (228)
115 CHL00200 trpA tryptophan synth 79.9 26 0.00057 28.4 9.6 38 146-183 192-231 (263)
116 PRK13307 bifunctional formalde 79.6 17 0.00038 31.2 8.8 152 22-181 123-304 (391)
117 cd00622 PLPDE_III_ODC Type III 79.4 26 0.00057 29.4 10.0 49 144-192 55-107 (362)
118 PRK13111 trpA tryptophan synth 79.2 23 0.0005 28.6 9.1 103 97-199 78-199 (258)
119 PTZ00314 inosine-5'-monophosph 79.1 46 0.001 29.6 11.9 86 97-185 271-375 (495)
120 PF09370 TIM-br_sig_trns: TIM- 79.1 3.5 7.6E-05 33.3 4.2 39 145-184 140-178 (268)
121 COG4943 Predicted signal trans 79.0 46 0.001 29.5 11.1 137 56-200 356-519 (524)
122 TIGR01048 lysA diaminopimelate 78.9 41 0.00089 28.9 11.8 111 77-194 16-134 (417)
123 PRK11359 cyclic-di-GMP phospho 78.6 34 0.00074 31.8 11.3 47 146-192 739-788 (799)
124 TIGR02873 spore_ylxY probable 78.6 34 0.00074 27.7 10.4 92 72-165 98-209 (268)
125 cd06831 PLPDE_III_ODC_like_AZI 78.4 34 0.00074 29.4 10.4 90 98-193 26-119 (394)
126 PF00834 Ribul_P_3_epim: Ribul 78.3 13 0.00028 28.9 7.1 85 92-180 42-131 (201)
127 PRK10551 phage resistance prot 78.2 42 0.0009 30.0 11.2 119 72-193 365-508 (518)
128 cd00384 ALAD_PBGS Porphobilino 78.0 39 0.00084 28.1 10.1 61 131-191 232-313 (314)
129 cd04730 NPD_like 2-Nitropropan 77.5 32 0.00069 26.8 10.4 53 129-183 77-129 (236)
130 COG1646 Predicted phosphate-bi 77.4 34 0.00074 27.2 9.7 65 130-195 162-237 (240)
131 PRK15452 putative protease; Pr 77.1 9.8 0.00021 33.3 6.8 47 146-192 50-105 (443)
132 PF03740 PdxJ: Pyridoxal phosp 76.8 6.9 0.00015 31.1 5.2 134 37-183 17-152 (239)
133 cd04824 eu_ALAD_PBGS_cysteine_ 76.6 41 0.00089 28.0 9.7 61 131-191 237-319 (320)
134 smart00052 EAL Putative diguan 76.0 7.6 0.00016 30.1 5.4 110 72-184 100-232 (241)
135 cd04724 Tryptophan_synthase_al 75.7 38 0.00082 26.9 9.4 57 145-204 65-130 (242)
136 cd08627 PI-PLCc_gamma1 Catalyt 75.5 8.1 0.00018 30.6 5.3 52 2-83 55-113 (229)
137 cd03174 DRE_TIM_metallolyase D 75.4 39 0.00084 26.8 13.4 54 146-199 119-188 (265)
138 cd04823 ALAD_PBGS_aspartate_ri 75.4 46 0.001 27.7 10.3 62 131-192 237-319 (320)
139 PRK14040 oxaloacetate decarbox 75.1 67 0.0015 29.4 14.9 105 95-199 63-197 (593)
140 PRK13111 trpA tryptophan synth 74.9 43 0.00093 27.0 13.2 38 145-183 189-228 (258)
141 cd02071 MM_CoA_mut_B12_BD meth 74.7 16 0.00034 25.6 6.3 48 145-192 68-120 (122)
142 PRK06739 pyruvate kinase; Vali 74.4 41 0.00089 28.5 9.5 59 142-200 251-329 (352)
143 TIGR00736 nifR3_rel_arch TIM-b 74.3 42 0.00091 26.7 9.3 56 129-184 158-221 (231)
144 PRK01130 N-acetylmannosamine-6 74.3 39 0.00084 26.2 11.1 82 97-183 109-202 (221)
145 TIGR02764 spore_ybaN_pdaB poly 74.2 35 0.00076 25.7 13.2 92 72-165 19-130 (191)
146 TIGR03239 GarL 2-dehydro-3-deo 74.0 44 0.00096 26.8 9.8 68 126-193 27-104 (249)
147 cd07943 DRE_TIM_HOA 4-hydroxy- 73.8 45 0.00097 26.8 14.6 101 96-198 62-182 (263)
148 COG5016 Pyruvate/oxaloacetate 73.8 60 0.0013 28.2 10.2 104 96-199 65-198 (472)
149 PF04131 NanE: Putative N-acet 73.6 20 0.00043 27.6 6.8 49 146-194 135-188 (192)
150 COG0352 ThiE Thiamine monophos 73.6 23 0.0005 27.7 7.4 79 98-183 53-131 (211)
151 PRK05286 dihydroorotate dehydr 73.3 27 0.00059 29.4 8.3 57 147-203 278-344 (344)
152 PF02581 TMP-TENI: Thiamine mo 73.2 24 0.00052 26.5 7.4 56 126-182 66-121 (180)
153 TIGR00559 pdxJ pyridoxine 5'-p 72.7 11 0.00023 30.1 5.3 132 38-182 17-150 (237)
154 PF01645 Glu_synthase: Conserv 72.6 28 0.00062 29.7 8.2 93 97-189 192-309 (368)
155 cd00003 PNPsynthase Pyridoxine 72.3 11 0.00024 29.9 5.3 132 38-182 17-150 (234)
156 TIGR00262 trpA tryptophan synt 72.2 50 0.0011 26.6 10.1 101 97-197 76-195 (256)
157 cd04728 ThiG Thiazole synthase 72.0 50 0.0011 26.5 14.7 53 142-194 161-222 (248)
158 PRK14042 pyruvate carboxylase 72.0 80 0.0017 28.9 12.8 104 95-198 62-195 (596)
159 TIGR01037 pyrD_sub1_fam dihydr 71.6 18 0.00039 29.6 6.8 59 147-205 225-290 (300)
160 COG0036 Rpe Pentose-5-phosphat 71.3 37 0.00081 26.7 8.0 85 92-180 46-135 (220)
161 COG0113 HemB Delta-aminolevuli 71.1 59 0.0013 27.0 11.7 63 131-193 245-328 (330)
162 PLN02274 inosine-5'-monophosph 70.8 78 0.0017 28.3 11.4 51 131-181 259-315 (505)
163 PRK11070 ssDNA exonuclease Rec 70.7 38 0.00083 30.8 9.1 42 143-184 115-159 (575)
164 PRK05265 pyridoxine 5'-phospha 70.7 13 0.00027 29.7 5.3 131 38-181 20-152 (239)
165 PRK10558 alpha-dehydro-beta-de 70.5 55 0.0012 26.4 9.8 69 125-193 33-111 (256)
166 TIGR01303 IMP_DH_rel_1 IMP deh 70.5 52 0.0011 29.1 9.7 83 97-183 255-357 (475)
167 PRK00230 orotidine 5'-phosphat 70.3 51 0.0011 26.0 13.6 57 46-105 44-101 (230)
168 cd01573 modD_like ModD; Quinol 68.8 62 0.0013 26.3 9.3 83 97-185 172-260 (272)
169 cd00331 IGPS Indole-3-glycerol 68.8 38 0.00083 26.2 7.8 72 130-204 42-122 (217)
170 PRK14010 potassium-transportin 68.8 22 0.00047 32.9 7.2 54 145-198 447-502 (673)
171 PRK07807 inosine 5-monophospha 68.4 86 0.0019 27.8 10.9 83 97-183 257-359 (479)
172 PRK05437 isopentenyl pyrophosp 68.2 53 0.0011 27.8 9.0 111 72-183 77-217 (352)
173 PF00290 Trp_syntA: Tryptophan 68.1 33 0.00073 27.7 7.4 156 39-199 18-197 (259)
174 PRK15447 putative protease; Pr 68.1 21 0.00046 29.4 6.5 48 145-193 51-104 (301)
175 PRK06512 thiamine-phosphate py 68.0 34 0.00073 26.9 7.3 57 126-182 81-137 (221)
176 CHL00200 trpA tryptophan synth 67.6 62 0.0013 26.2 8.9 100 97-197 81-199 (263)
177 cd06589 GH31 The enzymes of gl 67.6 13 0.00028 30.0 5.0 41 145-185 69-115 (265)
178 cd04732 HisA HisA. Phosphorib 67.4 23 0.0005 27.6 6.4 51 145-195 62-119 (234)
179 PRK11596 cyclic-di-GMP phospho 67.3 16 0.00034 29.1 5.5 46 146-191 200-248 (255)
180 COG1519 KdtA 3-deoxy-D-manno-o 67.1 85 0.0019 27.3 11.0 106 72-179 63-199 (419)
181 COG2185 Sbm Methylmalonyl-CoA 67.0 6.7 0.00015 28.7 2.9 54 140-193 76-135 (143)
182 COG0159 TrpA Tryptophan syntha 67.0 68 0.0015 26.1 9.3 102 96-197 82-202 (265)
183 TIGR00693 thiE thiamine-phosph 66.8 42 0.00092 25.3 7.6 55 126-181 67-121 (196)
184 PRK13307 bifunctional formalde 66.5 85 0.0019 27.1 13.9 128 56-193 227-375 (391)
185 PRK08227 autoinducer 2 aldolas 66.2 16 0.00034 29.7 5.2 56 131-186 106-181 (264)
186 PRK05692 hydroxymethylglutaryl 66.1 73 0.0016 26.1 9.7 55 145-199 123-197 (287)
187 PF10223 DUF2181: Uncharacteri 66.0 12 0.00025 30.0 4.4 144 40-189 56-242 (244)
188 cd02911 arch_FMN Archeal FMN-b 65.9 65 0.0014 25.5 9.5 84 98-185 131-222 (233)
189 TIGR00640 acid_CoA_mut_C methy 65.7 22 0.00047 25.5 5.4 50 145-194 71-125 (132)
190 PRK08649 inosine 5-monophospha 65.3 28 0.00061 29.7 6.8 52 130-181 152-213 (368)
191 PRK10302 hypothetical protein; 65.2 9.5 0.00021 31.1 3.8 120 39-166 109-237 (272)
192 PRK00043 thiE thiamine-phospha 65.2 33 0.00071 26.2 6.8 55 127-182 76-130 (212)
193 PRK10128 2-keto-3-deoxy-L-rham 65.1 74 0.0016 25.8 10.1 70 126-195 33-112 (267)
194 PRK14041 oxaloacetate decarbox 65.0 1E+02 0.0022 27.3 13.4 103 96-198 62-194 (467)
195 PTZ00066 pyruvate kinase; Prov 65.0 47 0.001 29.7 8.3 60 141-200 294-373 (513)
196 cd08597 PI-PLCc_PRIP_metazoa C 64.7 20 0.00044 29.0 5.5 12 2-13 55-66 (260)
197 TIGR01163 rpe ribulose-phospha 64.7 60 0.0013 24.7 12.3 87 93-182 42-132 (210)
198 cd00564 TMP_TenI Thiamine mono 64.6 35 0.00075 25.4 6.7 55 127-182 67-121 (196)
199 COG0159 TrpA Tryptophan syntha 64.5 76 0.0017 25.8 9.5 38 145-183 194-233 (265)
200 cd06596 GH31_CPE1046 CPE1046 i 64.5 17 0.00036 29.4 5.0 41 145-185 78-119 (261)
201 TIGR00007 phosphoribosylformim 64.4 32 0.00069 26.9 6.6 52 144-195 60-118 (230)
202 cd00452 KDPG_aldolase KDPG and 64.4 60 0.0013 24.6 8.6 55 130-184 115-172 (190)
203 PF01729 QRPTase_C: Quinolinat 64.4 14 0.00029 27.9 4.3 49 146-195 68-121 (169)
204 COG0854 PdxJ Pyridoxal phospha 64.1 21 0.00045 28.2 5.2 37 145-181 114-150 (243)
205 PTZ00314 inosine-5'-monophosph 64.0 48 0.001 29.5 8.3 51 131-181 252-308 (495)
206 PRK08883 ribulose-phosphate 3- 63.9 69 0.0015 25.1 8.6 26 156-181 168-193 (220)
207 TIGR03217 4OH_2_O_val_ald 4-hy 63.8 88 0.0019 26.3 15.5 100 96-197 64-183 (333)
208 PF00867 XPG_I: XPG I-region; 63.7 12 0.00027 24.9 3.6 23 166-188 15-38 (94)
209 PLN02765 pyruvate kinase 63.2 82 0.0018 28.3 9.4 59 141-200 292-370 (526)
210 PTZ00413 lipoate synthase; Pro 63.2 1E+02 0.0022 26.7 12.7 134 72-205 180-364 (398)
211 PRK07259 dihydroorotate dehydr 63.1 35 0.00076 27.9 6.9 60 146-205 224-290 (301)
212 PRK00208 thiG thiazole synthas 62.8 79 0.0017 25.4 15.3 53 142-194 161-222 (250)
213 PRK13384 delta-aminolevulinic 62.4 25 0.00055 29.2 5.7 60 131-190 241-321 (322)
214 CHL00162 thiG thiamin biosynth 62.4 52 0.0011 26.6 7.3 53 141-193 174-235 (267)
215 PRK04169 geranylgeranylglycery 62.4 78 0.0017 25.2 8.4 41 143-183 170-213 (232)
216 PF13344 Hydrolase_6: Haloacid 62.2 27 0.00058 23.6 5.1 34 145-178 20-57 (101)
217 PF03537 Glyco_hydro_114: Glyc 62.1 17 0.00037 23.2 3.9 32 131-162 25-56 (74)
218 PRK14057 epimerase; Provisiona 62.0 57 0.0012 26.3 7.6 82 92-179 62-157 (254)
219 TIGR01334 modD putative molybd 61.6 89 0.0019 25.6 10.9 101 95-196 109-230 (277)
220 PF05690 ThiG: Thiazole biosyn 61.5 17 0.00037 28.9 4.5 34 148-181 116-149 (247)
221 COG1921 SelA Selenocysteine sy 61.4 12 0.00026 32.1 3.8 39 145-183 177-220 (395)
222 COG1954 GlpP Glycerol-3-phosph 60.8 50 0.0011 25.0 6.5 49 145-193 38-93 (181)
223 PF00977 His_biosynth: Histidi 60.8 40 0.00087 26.5 6.6 54 146-199 63-123 (229)
224 PRK06852 aldolase; Validated 60.7 23 0.00049 29.4 5.3 40 146-185 158-210 (304)
225 PRK05848 nicotinate-nucleotide 60.7 41 0.00088 27.5 6.7 49 145-194 169-222 (273)
226 PF00478 IMPDH: IMP dehydrogen 60.5 78 0.0017 26.9 8.5 106 74-184 110-241 (352)
227 PRK13125 trpA tryptophan synth 60.4 84 0.0018 24.9 9.4 60 145-204 63-130 (244)
228 TIGR03099 dCO2ase_PEP1 pyridox 60.2 1.1E+02 0.0024 26.1 12.3 111 77-194 15-132 (398)
229 PRK01122 potassium-transportin 60.0 46 0.001 30.9 7.6 54 145-198 451-506 (679)
230 cd06836 PLPDE_III_ODC_DapDC_li 59.9 1.1E+02 0.0024 26.0 10.5 50 143-193 56-109 (379)
231 PRK05567 inosine 5'-monophosph 59.6 1.3E+02 0.0028 26.7 10.7 84 97-183 258-360 (486)
232 PLN02591 tryptophan synthase 59.1 93 0.002 25.0 9.1 100 97-197 68-186 (250)
233 PRK05742 nicotinate-nucleotide 58.8 1E+02 0.0022 25.3 10.3 82 97-186 178-264 (277)
234 PF00490 ALAD: Delta-aminolevu 58.8 31 0.00067 28.8 5.7 62 131-192 242-324 (324)
235 PRK06559 nicotinate-nucleotide 58.8 49 0.0011 27.2 6.9 50 146-196 185-239 (290)
236 PRK13585 1-(5-phosphoribosyl)- 58.7 46 0.001 26.1 6.7 47 149-195 70-122 (241)
237 PF00532 Peripla_BP_1: Peripla 58.7 95 0.0021 25.0 8.7 129 72-208 44-209 (279)
238 PRK12581 oxaloacetate decarbox 58.6 1.3E+02 0.0029 26.6 12.3 103 95-197 71-203 (468)
239 CHL00162 thiG thiamin biosynth 58.6 20 0.00044 28.9 4.5 34 148-181 130-163 (267)
240 PLN02623 pyruvate kinase 58.2 46 0.001 30.2 7.1 57 144-200 365-441 (581)
241 PF00875 DNA_photolyase: DNA p 57.8 41 0.00089 24.7 5.9 60 146-205 57-119 (165)
242 TIGR01235 pyruv_carbox pyruvat 57.3 2.1E+02 0.0046 28.5 12.1 103 96-198 592-730 (1143)
243 TIGR01182 eda Entner-Doudoroff 57.2 52 0.0011 25.6 6.5 54 131-184 32-88 (204)
244 PRK12656 fructose-6-phosphate 56.9 96 0.0021 24.5 14.1 140 43-191 43-196 (222)
245 PRK06096 molybdenum transport 56.9 1.1E+02 0.0024 25.1 10.1 49 146-195 178-230 (284)
246 PF01702 TGT: Queuine tRNA-rib 56.8 28 0.0006 27.5 5.1 37 154-190 112-148 (238)
247 PRK03512 thiamine-phosphate py 56.7 66 0.0014 25.0 7.1 56 126-182 73-128 (211)
248 COG0157 NadC Nicotinate-nucleo 56.3 23 0.00049 29.0 4.4 49 146-194 176-228 (280)
249 cd07939 DRE_TIM_NifV Streptomy 56.2 1E+02 0.0022 24.6 13.8 53 146-198 114-180 (259)
250 COG1830 FbaB DhnA-type fructos 55.8 48 0.001 26.9 6.2 42 146-187 134-190 (265)
251 PF05913 DUF871: Bacterial pro 55.8 67 0.0015 27.3 7.4 103 74-178 16-135 (357)
252 cd02875 GH18_chitobiase Chitob 55.7 75 0.0016 26.9 7.8 62 141-202 63-148 (358)
253 PRK06015 keto-hydroxyglutarate 55.3 56 0.0012 25.3 6.4 38 146-183 44-83 (201)
254 COG2217 ZntA Cation transport 55.1 39 0.00084 31.6 6.3 54 145-198 543-598 (713)
255 COG2070 Dioxygenases related t 55.0 55 0.0012 27.5 6.8 54 131-185 103-156 (336)
256 PRK05458 guanosine 5'-monophos 54.7 1.3E+02 0.0028 25.3 12.0 107 72-181 48-166 (326)
257 COG5016 Pyruvate/oxaloacetate 54.5 1.5E+02 0.0032 25.9 11.5 115 68-182 94-230 (472)
258 PRK06978 nicotinate-nucleotide 54.5 24 0.00051 29.2 4.4 51 146-196 194-247 (294)
259 cd03332 LMO_FMN L-Lactate 2-mo 54.3 35 0.00076 29.3 5.5 43 141-183 238-281 (383)
260 cd04724 Tryptophan_synthase_al 54.1 1.1E+02 0.0024 24.3 9.5 102 95-197 64-184 (242)
261 PRK13306 ulaD 3-keto-L-gulonat 54.1 98 0.0021 24.2 7.7 90 91-181 39-134 (216)
262 PRK13586 1-(5-phosphoribosyl)- 53.6 68 0.0015 25.4 6.8 52 145-196 62-120 (232)
263 COG4747 ACT domain-containing 53.5 28 0.00061 24.6 3.9 47 146-205 19-65 (142)
264 PRK06843 inosine 5-monophospha 53.4 1.5E+02 0.0033 25.7 11.6 86 97-185 183-287 (404)
265 cd04726 KGPDC_HPS 3-Keto-L-gul 53.2 97 0.0021 23.4 14.5 127 46-183 42-186 (202)
266 TIGR00262 trpA tryptophan synt 52.9 1.2E+02 0.0026 24.4 9.8 57 146-205 76-142 (256)
267 TIGR01305 GMP_reduct_1 guanosi 52.8 1.3E+02 0.0029 25.4 8.5 82 97-181 139-239 (343)
268 PRK09282 pyruvate carboxylase 52.8 1.9E+02 0.004 26.5 14.1 104 96-199 63-196 (592)
269 cd00381 IMPDH IMPDH: The catal 52.8 1.4E+02 0.003 25.0 16.1 84 97-183 124-226 (325)
270 cd04722 TIM_phosphate_binding 52.6 90 0.0019 22.8 15.2 123 56-183 58-199 (200)
271 COG1509 KamA Lysine 2,3-aminom 52.1 1.5E+02 0.0033 25.3 9.7 97 98-195 149-276 (369)
272 PRK07028 bifunctional hexulose 51.9 1.6E+02 0.0035 25.5 10.4 57 127-183 76-138 (430)
273 PRK08091 ribulose-phosphate 3- 51.6 1.2E+02 0.0025 24.1 7.7 82 92-179 55-143 (228)
274 cd02811 IDI-2_FMN Isopentenyl- 51.6 1.4E+02 0.003 25.0 8.6 110 73-182 70-208 (326)
275 cd06278 PBP1_LacI_like_2 Ligan 51.6 50 0.0011 25.6 5.9 36 148-183 22-61 (266)
276 TIGR01304 IMP_DH_rel_2 IMP deh 51.4 37 0.00079 29.0 5.2 52 130-181 153-214 (369)
277 PRK08385 nicotinate-nucleotide 51.2 82 0.0018 25.8 7.0 50 146-196 171-224 (278)
278 cd06299 PBP1_LacI_like_13 Liga 51.1 34 0.00073 26.7 4.8 36 147-182 21-61 (265)
279 cd00401 AdoHcyase S-adenosyl-L 50.8 1.5E+02 0.0033 25.7 9.0 63 129-192 57-128 (413)
280 TIGR01497 kdpB K+-transporting 50.5 84 0.0018 29.2 7.7 54 145-198 452-507 (675)
281 cd06311 PBP1_ABC_sugar_binding 50.5 94 0.002 24.4 7.4 68 133-200 186-258 (274)
282 cd02072 Glm_B12_BD B12 binding 50.1 92 0.002 22.3 7.9 39 145-183 68-115 (128)
283 KOG0622 Ornithine decarboxylas 50.0 1.7E+02 0.0037 25.5 8.8 43 141-185 131-178 (448)
284 PLN02274 inosine-5'-monophosph 49.7 1.9E+02 0.0042 25.8 11.2 107 73-183 249-380 (505)
285 PF05221 AdoHcyase: S-adenosyl 49.7 1.4E+02 0.0031 24.3 7.9 64 128-191 63-136 (268)
286 PF04131 NanE: Putative N-acet 49.6 55 0.0012 25.2 5.4 87 94-182 19-118 (192)
287 PF01884 PcrB: PcrB family; I 49.5 43 0.00094 26.6 5.0 57 129-185 150-213 (230)
288 PRK07695 transcriptional regul 49.5 1E+02 0.0022 23.4 7.1 57 126-184 67-123 (201)
289 PRK00748 1-(5-phosphoribosyl)- 49.3 80 0.0017 24.6 6.6 51 145-195 63-120 (233)
290 PLN02494 adenosylhomocysteinas 49.1 1.6E+02 0.0034 26.2 8.8 84 108-191 46-139 (477)
291 cd04732 HisA HisA. Phosphorib 49.1 1.2E+02 0.0027 23.4 12.0 107 76-183 87-219 (234)
292 KOG2550 IMP dehydrogenase/GMP 48.9 1.3E+02 0.0027 26.3 7.8 103 75-181 253-381 (503)
293 PRK06552 keto-hydroxyglutarate 48.8 71 0.0015 24.9 6.1 38 146-183 53-95 (213)
294 KOG2518 5'-3' exonuclease [Rep 48.7 21 0.00046 31.7 3.4 45 145-189 131-176 (556)
295 PRK11840 bifunctional sulfur c 48.6 38 0.00081 28.4 4.7 48 146-193 185-246 (326)
296 PF05368 NmrA: NmrA-like famil 48.6 53 0.0011 25.4 5.5 10 172-181 90-99 (233)
297 cd02067 B12-binding B12 bindin 48.5 60 0.0013 22.3 5.2 46 145-190 68-116 (119)
298 cd01572 QPRTase Quinolinate ph 48.4 1.5E+02 0.0032 24.1 10.0 79 98-184 171-255 (268)
299 cd06841 PLPDE_III_MccE_like Ty 48.2 1.7E+02 0.0037 24.7 9.6 27 165-192 89-115 (379)
300 COG2150 Predicted regulator of 47.8 1.2E+02 0.0025 22.8 6.8 55 39-98 79-133 (167)
301 COG0107 HisF Imidazoleglycerol 47.8 36 0.00078 27.1 4.2 55 145-199 63-124 (256)
302 PRK09250 fructose-bisphosphate 47.7 57 0.0012 27.6 5.6 57 131-187 158-241 (348)
303 COG2022 ThiG Uncharacterized e 47.7 33 0.00072 27.3 4.0 34 148-181 123-156 (262)
304 TIGR01684 viral_ppase viral ph 47.7 63 0.0014 26.8 5.8 38 146-183 153-195 (301)
305 TIGR01675 plant-AP plant acid 47.4 81 0.0017 25.0 6.2 36 145-180 126-165 (229)
306 TIGR00936 ahcY adenosylhomocys 47.2 1.9E+02 0.0042 25.1 9.4 80 108-187 32-117 (406)
307 TIGR03151 enACPred_II putative 46.9 1.7E+02 0.0036 24.3 14.3 103 75-184 77-191 (307)
308 PF01136 Peptidase_U32: Peptid 46.7 1.4E+02 0.003 23.2 9.9 26 168-193 161-190 (233)
309 COG0019 LysA Diaminopimelate d 46.5 1.9E+02 0.0042 24.9 12.1 109 78-193 19-135 (394)
310 cd00958 DhnA Class I fructose- 46.5 53 0.0012 25.7 5.2 41 146-186 113-166 (235)
311 COG0214 SNZ1 Pyridoxine biosyn 46.4 73 0.0016 25.5 5.7 49 144-192 194-253 (296)
312 PRK02615 thiamine-phosphate py 46.4 1.1E+02 0.0024 25.9 7.3 50 131-181 216-265 (347)
313 PF01791 DeoC: DeoC/LacD famil 46.3 57 0.0012 25.6 5.4 40 146-185 116-168 (236)
314 TIGR02090 LEU1_arch isopropylm 46.0 1.9E+02 0.004 24.6 12.4 53 146-198 116-182 (363)
315 COG0320 LipA Lipoate synthase 45.7 78 0.0017 26.0 5.9 133 72-205 100-282 (306)
316 PRK09016 quinolinate phosphori 45.7 38 0.00081 28.0 4.3 49 146-195 197-249 (296)
317 TIGR03239 GarL 2-dehydro-3-deo 45.5 1.1E+02 0.0025 24.4 7.0 38 146-184 194-231 (249)
318 COG2022 ThiG Uncharacterized e 45.5 1.1E+02 0.0024 24.4 6.6 53 141-193 167-228 (262)
319 PF00290 Trp_syntA: Tryptophan 45.5 1.6E+02 0.0035 23.8 10.1 38 145-183 187-226 (259)
320 cd06557 KPHMT-like Ketopantoat 45.3 1.4E+02 0.003 24.1 7.4 69 126-194 98-190 (254)
321 TIGR01302 IMP_dehydrog inosine 45.0 91 0.002 27.3 6.8 50 131-180 235-290 (450)
322 PRK07896 nicotinate-nucleotide 45.0 49 0.0011 27.2 4.8 49 146-195 188-240 (289)
323 PRK10128 2-keto-3-deoxy-L-rham 45.0 1.6E+02 0.0035 23.9 7.8 46 146-192 201-247 (267)
324 KOG1201 Hydroxysteroid 17-beta 45.0 1.3E+02 0.0029 24.9 7.2 28 144-172 75-104 (300)
325 PRK02261 methylaspartate mutas 44.8 1.2E+02 0.0025 21.9 9.2 51 145-195 72-133 (137)
326 cd04737 LOX_like_FMN L-Lactate 44.7 58 0.0013 27.6 5.4 41 142-182 207-248 (351)
327 cd06309 PBP1_YtfQ_like Peripla 44.4 57 0.0012 25.6 5.2 40 144-183 18-62 (273)
328 PRK06543 nicotinate-nucleotide 44.4 42 0.00091 27.5 4.3 50 146-196 181-235 (281)
329 PRK08091 ribulose-phosphate 3- 44.4 1.6E+02 0.0035 23.4 8.9 104 77-183 83-207 (228)
330 cd06305 PBP1_methylthioribose_ 44.3 1.4E+02 0.003 23.2 7.4 39 146-184 20-63 (273)
331 PRK05749 3-deoxy-D-manno-octul 44.2 2E+02 0.0044 24.5 12.8 89 72-162 64-154 (425)
332 PF05690 ThiG: Thiazole biosyn 43.8 1.7E+02 0.0037 23.5 10.6 52 142-193 161-221 (247)
333 TIGR01370 cysRS possible cyste 43.7 42 0.00091 28.0 4.3 20 143-162 82-101 (315)
334 TIGR02884 spore_pdaA delta-lac 43.6 1.6E+02 0.0034 23.0 12.2 91 72-164 50-161 (224)
335 PLN02229 alpha-galactosidase 43.5 55 0.0012 28.6 5.1 41 145-185 131-185 (427)
336 cd00956 Transaldolase_FSA Tran 43.4 1.1E+02 0.0024 23.8 6.4 40 146-186 92-131 (211)
337 COG2179 Predicted hydrolase of 43.3 1.4E+02 0.0031 22.5 7.2 56 140-195 44-106 (175)
338 TIGR00078 nadC nicotinate-nucl 43.2 1.1E+02 0.0023 24.8 6.6 49 147-195 167-219 (265)
339 PRK13957 indole-3-glycerol-pho 42.9 1.8E+02 0.0038 23.4 8.2 77 129-205 71-153 (247)
340 PRK10669 putative cation:proto 42.4 2.6E+02 0.0056 25.2 11.9 116 72-196 427-548 (558)
341 PRK11475 DNA-binding transcrip 42.4 1E+02 0.0022 23.8 6.1 49 146-194 57-111 (207)
342 PRK08999 hypothetical protein; 42.3 1.1E+02 0.0024 25.1 6.7 24 158-181 228-251 (312)
343 PF02784 Orn_Arg_deC_N: Pyrido 42.2 1.6E+02 0.0034 23.3 7.4 51 143-193 49-103 (251)
344 PF13377 Peripla_BP_3: Peripla 42.1 1.2E+02 0.0027 21.4 8.1 59 146-208 30-96 (160)
345 cd06810 PLPDE_III_ODC_DapDC_li 41.8 2.1E+02 0.0045 23.9 10.1 90 98-193 14-108 (368)
346 PRK07565 dihydroorotate dehydr 41.7 2.1E+02 0.0045 23.9 16.6 58 148-205 231-296 (334)
347 PF03446 NAD_binding_2: NAD bi 41.6 1.4E+02 0.0029 21.9 6.5 31 145-176 14-44 (163)
348 PRK08649 inosine 5-monophospha 41.6 95 0.0021 26.5 6.2 37 146-182 122-160 (368)
349 PF02638 DUF187: Glycosyl hydr 41.5 26 0.00057 29.0 2.8 18 145-162 73-90 (311)
350 cd06598 GH31_transferase_CtsZ 41.5 1.1E+02 0.0024 25.3 6.5 16 169-184 147-162 (317)
351 PRK14024 phosphoribosyl isomer 41.4 1.2E+02 0.0026 24.0 6.5 52 145-196 64-122 (241)
352 TIGR00482 nicotinate (nicotina 41.4 1.6E+02 0.0034 22.4 8.7 100 93-195 78-190 (193)
353 PRK08227 autoinducer 2 aldolas 41.2 42 0.0009 27.3 3.8 39 168-206 99-143 (264)
354 TIGR00338 serB phosphoserine p 41.2 1.4E+02 0.003 22.7 6.8 37 145-181 91-128 (219)
355 TIGR01417 PTS_I_fam phosphoeno 41.2 1.2E+02 0.0025 27.7 7.0 48 147-194 487-538 (565)
356 cd06313 PBP1_ABC_sugar_binding 41.0 97 0.0021 24.4 6.1 39 145-183 19-62 (272)
357 TIGR02134 transald_staph trans 41.0 1.9E+02 0.004 23.1 15.3 163 39-207 40-236 (236)
358 PRK04128 1-(5-phosphoribosyl)- 41.0 1.4E+02 0.0031 23.4 6.8 49 145-193 62-116 (228)
359 cd01539 PBP1_GGBP Periplasmic 40.9 1.7E+02 0.0036 23.6 7.5 36 147-182 21-63 (303)
360 TIGR01544 HAD-SF-IE haloacid d 40.7 78 0.0017 25.9 5.4 33 145-177 127-160 (277)
361 cd07940 DRE_TIM_IPMS 2-isoprop 40.7 1.9E+02 0.0041 23.2 14.9 123 72-197 20-183 (268)
362 PF02254 TrkA_N: TrkA-N domain 40.4 1.1E+02 0.0025 20.5 11.5 102 72-182 8-115 (116)
363 cd01572 QPRTase Quinolinate ph 40.4 1.1E+02 0.0024 24.8 6.2 48 147-194 171-222 (268)
364 COG4229 Predicted enolase-phos 40.3 97 0.0021 23.9 5.4 19 146-164 110-128 (229)
365 PF00224 PK: Pyruvate kinase, 40.3 89 0.0019 26.4 5.9 58 142-199 261-338 (348)
366 PRK06106 nicotinate-nucleotide 40.2 53 0.0011 26.9 4.3 49 146-195 182-235 (281)
367 PF00107 ADH_zinc_N: Zinc-bind 40.1 1.1E+02 0.0024 20.9 5.6 46 148-194 7-52 (130)
368 KOG0207 Cation transport ATPas 39.8 97 0.0021 29.7 6.3 53 146-198 730-784 (951)
369 cd01568 QPRTase_NadC Quinolina 39.7 1.3E+02 0.0028 24.4 6.5 50 146-195 169-222 (269)
370 PLN02428 lipoic acid synthase 39.4 2.4E+02 0.0052 24.0 12.6 130 76-205 137-316 (349)
371 PRK10658 putative alpha-glucos 39.4 75 0.0016 29.5 5.6 17 168-184 400-416 (665)
372 PRK05848 nicotinate-nucleotide 39.4 2.1E+02 0.0046 23.3 8.4 82 97-186 170-260 (273)
373 cd06312 PBP1_ABC_sugar_binding 39.4 1.8E+02 0.004 22.6 7.6 57 133-189 184-243 (271)
374 PRK01362 putative translaldola 39.4 1.9E+02 0.004 22.7 14.8 141 44-193 39-194 (214)
375 PRK06843 inosine 5-monophospha 39.4 1.8E+02 0.0038 25.3 7.5 51 131-181 164-220 (404)
376 cd06292 PBP1_LacI_like_10 Liga 39.2 1.1E+02 0.0023 24.0 6.0 38 145-182 19-61 (273)
377 cd01540 PBP1_arabinose_binding 39.1 85 0.0018 24.8 5.4 38 146-183 20-61 (289)
378 PF00702 Hydrolase: haloacid d 39.1 1E+02 0.0023 23.0 5.8 52 145-196 133-192 (215)
379 PLN02979 glycolate oxidase 39.0 90 0.0019 26.7 5.6 43 141-183 208-251 (366)
380 cd03309 CmuC_like CmuC_like. P 38.9 91 0.002 26.0 5.6 48 147-194 203-253 (321)
381 PRK15452 putative protease; Pr 38.9 2.7E+02 0.0059 24.5 12.9 92 44-137 48-139 (443)
382 cd01994 Alpha_ANH_like_IV This 38.7 57 0.0012 25.0 4.1 34 148-181 107-142 (194)
383 cd07944 DRE_TIM_HOA_like 4-hyd 38.6 2.1E+02 0.0045 23.1 15.5 128 72-199 20-180 (266)
384 cd06295 PBP1_CelR Ligand bindi 38.6 1.9E+02 0.0041 22.6 7.4 16 146-161 78-93 (275)
385 TIGR02708 L_lactate_ox L-lacta 38.5 86 0.0019 26.8 5.5 43 142-184 214-258 (367)
386 cd01542 PBP1_TreR_like Ligand- 38.4 77 0.0017 24.5 5.0 13 170-182 49-61 (259)
387 TIGR01670 YrbI-phosphatas 3-de 38.2 1.4E+02 0.0031 21.6 6.1 49 146-194 35-87 (154)
388 PRK05581 ribulose-phosphate 3- 38.1 1.8E+02 0.0039 22.2 7.6 82 95-180 49-135 (220)
389 cd04731 HisF The cyclase subun 37.9 1.6E+02 0.0034 23.1 6.7 52 144-195 59-117 (243)
390 cd06318 PBP1_ABC_sugar_binding 37.7 1E+02 0.0022 24.2 5.7 37 146-182 20-61 (282)
391 PRK07226 fructose-bisphosphate 37.7 1.5E+02 0.0032 23.9 6.6 40 147-186 131-183 (267)
392 cd04738 DHOD_2_like Dihydrooro 37.5 1.9E+02 0.0042 24.0 7.4 48 146-193 268-325 (327)
393 TIGR01681 HAD-SF-IIIC HAD-supe 37.5 1.1E+02 0.0025 21.3 5.3 30 145-174 35-65 (128)
394 PTZ00411 transaldolase-like pr 37.5 2.5E+02 0.0055 23.7 13.4 131 57-193 102-264 (333)
395 PRK10558 alpha-dehydro-beta-de 37.3 83 0.0018 25.3 5.0 47 146-193 201-248 (256)
396 TIGR00343 pyridoxal 5'-phospha 37.3 84 0.0018 25.8 5.0 51 143-193 184-245 (287)
397 PRK06294 coproporphyrinogen II 37.2 92 0.002 26.5 5.5 55 43-103 76-133 (370)
398 PRK06806 fructose-bisphosphate 37.2 1.8E+02 0.004 23.7 7.1 54 129-182 163-229 (281)
399 KOG3111 D-ribulose-5-phosphate 37.1 1.3E+02 0.0028 23.4 5.6 68 92-161 47-118 (224)
400 PRK01222 N-(5'-phosphoribosyl) 37.1 2E+02 0.0043 22.3 8.9 87 96-185 41-133 (210)
401 cd03174 DRE_TIM_metallolyase D 37.0 1.2E+02 0.0027 23.9 6.0 38 145-182 54-93 (265)
402 PRK09427 bifunctional indole-3 36.9 2.3E+02 0.0051 25.0 8.0 23 43-65 147-169 (454)
403 COG0106 HisA Phosphoribosylfor 36.8 2.2E+02 0.0048 22.8 12.3 138 40-184 59-222 (241)
404 TIGR01698 PUNP purine nucleoti 36.7 1E+02 0.0022 24.6 5.3 48 142-189 130-186 (237)
405 TIGR01303 IMP_DH_rel_1 IMP deh 36.6 67 0.0015 28.5 4.7 51 131-181 236-292 (475)
406 cd01543 PBP1_XylR Ligand-bindi 36.6 55 0.0012 25.6 4.0 8 174-181 48-55 (265)
407 PRK06806 fructose-bisphosphate 36.1 2.4E+02 0.0052 23.1 7.6 58 148-205 67-130 (281)
408 cd06828 PLPDE_III_DapDC Type I 36.0 2.6E+02 0.0056 23.4 10.0 91 98-194 16-112 (373)
409 COG0134 TrpC Indole-3-glycerol 36.0 65 0.0014 26.0 4.1 97 82-182 126-235 (254)
410 PF14871 GHL6: Hypothetical gl 36.0 43 0.00092 24.1 2.9 18 145-162 47-64 (132)
411 PF13407 Peripla_BP_4: Peripla 36.0 1.1E+02 0.0025 23.6 5.7 37 147-183 20-62 (257)
412 PRK07428 nicotinate-nucleotide 35.7 86 0.0019 25.8 4.9 49 146-195 184-237 (288)
413 TIGR00290 MJ0570_dom MJ0570-re 35.7 57 0.0012 25.7 3.8 36 146-181 102-139 (223)
414 PF02896 PEP-utilizers_C: PEP- 35.7 1.3E+02 0.0027 24.9 5.9 40 146-185 239-280 (293)
415 TIGR02765 crypto_DASH cryptoch 35.6 1.9E+02 0.004 25.0 7.3 60 145-204 64-126 (429)
416 PRK12330 oxaloacetate decarbox 35.6 3.3E+02 0.0071 24.4 14.9 105 95-199 63-197 (499)
417 PRK03669 mannosyl-3-phosphogly 35.5 73 0.0016 25.5 4.5 35 144-178 29-64 (271)
418 PRK00278 trpC indole-3-glycero 35.4 2.3E+02 0.0051 22.7 11.6 103 78-182 126-239 (260)
419 PLN02898 HMP-P kinase/thiamin- 35.4 1.7E+02 0.0036 26.0 7.1 55 126-181 361-415 (502)
420 COG1242 Predicted Fe-S oxidore 35.3 91 0.002 25.7 4.8 37 145-181 171-216 (312)
421 TIGR03128 RuMP_HxlA 3-hexulose 35.2 2E+02 0.0043 21.8 17.1 130 41-182 40-185 (206)
422 cd03465 URO-D_like The URO-D _ 35.2 97 0.0021 25.5 5.3 47 147-193 213-260 (330)
423 PRK05904 coproporphyrinogen II 35.2 86 0.0019 26.5 5.0 55 44-104 75-134 (353)
424 PF01207 Dus: Dihydrouridine s 35.2 2.6E+02 0.0056 23.1 8.6 92 98-190 113-225 (309)
425 cd04731 HisF The cyclase subun 35.1 1.6E+02 0.0034 23.2 6.3 56 130-185 160-225 (243)
426 COG1456 CdhE CO dehydrogenase/ 35.1 2.9E+02 0.0063 23.7 9.8 38 146-183 196-237 (467)
427 PLN02762 pyruvate kinase compl 35.1 3.4E+02 0.0073 24.4 10.0 59 142-200 290-368 (509)
428 COG0415 PhrB Deoxyribodipyrimi 34.9 1.4E+02 0.003 26.4 6.3 61 145-205 58-121 (461)
429 PRK13347 coproporphyrinogen II 34.8 99 0.0021 27.1 5.5 55 44-104 122-183 (453)
430 cd06839 PLPDE_III_Btrk_like Ty 34.7 2.8E+02 0.006 23.3 10.4 91 98-194 20-115 (382)
431 cd08594 PI-PLCc_eta Catalytic 34.7 1.2E+02 0.0027 24.0 5.4 23 43-65 71-100 (227)
432 cd04739 DHOD_like Dihydroorota 34.6 1.2E+02 0.0025 25.3 5.7 58 148-205 229-294 (325)
433 TIGR00735 hisF imidazoleglycer 34.6 2.4E+02 0.0051 22.5 12.8 76 131-206 167-253 (254)
434 PRK02083 imidazole glycerol ph 34.5 1.8E+02 0.004 23.0 6.6 51 145-195 63-120 (253)
435 cd06842 PLPDE_III_Y4yA_like Ty 34.5 3.1E+02 0.0066 23.8 10.5 26 166-192 93-118 (423)
436 cd01538 PBP1_ABC_xylose_bindin 34.5 2.3E+02 0.0051 22.4 7.6 38 146-183 20-62 (288)
437 TIGR00735 hisF imidazoleglycer 34.4 1.9E+02 0.0042 23.0 6.7 51 145-195 63-120 (254)
438 PRK06801 hypothetical protein; 34.3 2.5E+02 0.0053 23.1 7.4 58 148-205 67-130 (286)
439 cd06298 PBP1_CcpA_like Ligand- 34.0 2.2E+02 0.0048 22.0 7.3 36 147-182 21-61 (268)
440 cd04723 HisA_HisF Phosphoribos 34.0 1.1E+02 0.0025 24.0 5.3 40 144-183 177-218 (233)
441 PF08444 Gly_acyl_tr_C: Aralky 34.0 54 0.0012 21.9 2.9 35 143-177 40-75 (89)
442 smart00484 XPGI Xeroderma pigm 33.9 59 0.0013 20.7 3.0 20 166-185 15-35 (73)
443 TIGR01919 hisA-trpF 1-(5-phosp 33.9 73 0.0016 25.4 4.2 51 145-195 63-120 (243)
444 cd06285 PBP1_LacI_like_7 Ligan 33.8 1E+02 0.0023 23.9 5.1 11 148-158 48-58 (265)
445 PRK11165 diaminopimelate decar 33.8 3.1E+02 0.0068 23.7 10.9 48 144-192 76-131 (420)
446 PHA03398 viral phosphatase sup 33.8 1.3E+02 0.0029 24.9 5.6 33 146-178 155-188 (303)
447 PF00682 HMGL-like: HMGL-like 33.7 2.3E+02 0.0049 22.0 11.5 124 72-197 14-177 (237)
448 cd06287 PBP1_LacI_like_8 Ligan 33.7 2.3E+02 0.005 22.3 7.2 59 146-208 139-206 (269)
449 TIGR03201 dearomat_had 6-hydro 33.6 1.7E+02 0.0037 24.2 6.6 36 146-182 181-216 (349)
450 PRK12655 fructose-6-phosphate 33.5 2.4E+02 0.0052 22.2 13.9 132 43-183 42-187 (220)
451 COG2102 Predicted ATPases of P 33.4 74 0.0016 25.1 4.0 37 147-183 104-142 (223)
452 PF00218 IGPS: Indole-3-glycer 33.4 2.6E+02 0.0056 22.6 8.1 98 82-183 128-238 (254)
453 COG3836 HpcH 2,4-dihydroxyhept 33.3 77 0.0017 25.4 4.0 48 146-194 200-248 (255)
454 cd08596 PI-PLCc_epsilon Cataly 33.3 1.2E+02 0.0027 24.4 5.3 37 42-83 70-113 (254)
455 TIGR01481 ccpA catabolite cont 33.2 1.9E+02 0.0041 23.4 6.7 59 146-208 198-264 (329)
456 PRK04180 pyridoxal biosynthesi 33.1 1.1E+02 0.0024 25.2 5.0 51 143-193 190-251 (293)
457 PRK05660 HemN family oxidoredu 33.0 1.2E+02 0.0025 25.9 5.5 55 44-104 77-138 (378)
458 PRK11840 bifunctional sulfur c 33.0 3E+02 0.0065 23.2 14.9 50 144-193 237-295 (326)
459 PRK09484 3-deoxy-D-manno-octul 32.9 1.5E+02 0.0033 22.1 5.7 51 145-195 54-108 (183)
460 cd01568 QPRTase_NadC Quinolina 32.9 2.7E+02 0.0058 22.6 9.7 78 98-183 170-255 (269)
461 PRK09206 pyruvate kinase; Prov 32.8 1.9E+02 0.0041 25.7 6.8 58 143-200 259-336 (470)
462 COG5564 Predicted TIM-barrel e 32.8 80 0.0017 25.1 4.0 38 145-183 146-183 (276)
463 PRK08745 ribulose-phosphate 3- 32.7 2E+02 0.0043 22.7 6.4 63 131-193 28-107 (223)
464 PRK03379 vitamin B12-transport 32.7 1.5E+02 0.0032 23.6 5.8 63 131-195 71-133 (260)
465 cd04722 TIM_phosphate_binding 32.6 1.3E+02 0.0028 21.9 5.3 57 127-183 79-143 (200)
466 COG0075 Serine-pyruvate aminot 32.5 3.3E+02 0.0071 23.5 9.1 39 145-183 151-190 (383)
467 TIGR02463 MPGP_rel mannosyl-3- 32.5 1.2E+02 0.0027 23.1 5.3 35 144-178 21-56 (221)
468 cd02922 FCB2_FMN Flavocytochro 32.4 1.4E+02 0.003 25.3 5.7 40 142-181 199-239 (344)
469 COG0656 ARA1 Aldo/keto reducta 32.4 2.8E+02 0.0061 22.7 11.5 107 57-163 70-191 (280)
470 TIGR01501 MthylAspMutase methy 32.3 1.9E+02 0.0042 20.8 7.7 50 145-194 70-130 (134)
471 cd06308 PBP1_sensor_kinase_lik 32.2 1.1E+02 0.0025 23.8 5.1 36 148-183 22-63 (270)
472 PRK13587 1-(5-phosphoribosyl)- 32.2 1.8E+02 0.004 22.9 6.2 51 145-195 65-122 (234)
473 PRK08446 coproporphyrinogen II 32.1 1.4E+02 0.0029 25.2 5.7 55 44-104 70-129 (350)
474 PRK06801 hypothetical protein; 32.0 2.5E+02 0.0055 23.0 7.1 69 126-194 163-246 (286)
475 PF01902 ATP_bind_4: ATP-bindi 31.9 51 0.0011 25.9 2.9 33 150-182 106-140 (218)
476 PF00532 Peripla_BP_1: Peripla 31.8 1.4E+02 0.003 24.0 5.6 57 146-202 47-120 (279)
477 cd01541 PBP1_AraR Ligand-bindi 31.8 81 0.0018 24.7 4.2 38 145-182 19-61 (273)
478 PF08774 VRR_NUC: VRR-NUC doma 31.7 1.6E+02 0.0034 19.5 5.1 36 57-93 63-98 (100)
479 PF04273 DUF442: Putative phos 31.7 77 0.0017 21.9 3.5 20 142-161 14-33 (110)
480 PRK09249 coproporphyrinogen II 31.6 1.1E+02 0.0024 26.7 5.3 56 43-104 120-182 (453)
481 PRK01033 imidazole glycerol ph 31.5 2.4E+02 0.0051 22.6 6.8 56 144-199 62-124 (258)
482 PRK14987 gluconate operon tran 31.5 1.2E+02 0.0025 24.8 5.2 43 41-86 5-49 (331)
483 TIGR02634 xylF D-xylose ABC tr 31.4 1.7E+02 0.0037 23.6 6.2 39 145-183 18-61 (302)
484 PRK07379 coproporphyrinogen II 31.4 1.3E+02 0.0028 25.9 5.6 56 43-104 84-146 (400)
485 PLN02692 alpha-galactosidase 31.2 1E+02 0.0022 26.8 4.8 41 145-185 124-179 (412)
486 PF14057 GGGtGRT: GGGtGRT prot 31.2 38 0.00082 27.2 2.0 75 129-203 164-248 (328)
487 PRK15408 autoinducer 2-binding 31.2 2.4E+02 0.0051 23.5 7.0 56 133-188 210-267 (336)
488 TIGR00007 phosphoribosylformim 31.1 1.4E+02 0.003 23.2 5.3 41 143-183 176-218 (230)
489 cd04729 NanE N-acetylmannosami 30.9 2.5E+02 0.0054 21.6 11.6 82 97-183 113-206 (219)
490 TIGR02151 IPP_isom_2 isopenten 30.9 3.2E+02 0.0069 22.9 11.7 112 72-184 70-211 (333)
491 PRK12290 thiE thiamine-phospha 30.9 2E+02 0.0043 25.3 6.5 56 126-182 271-326 (437)
492 cd08629 PI-PLCc_delta1 Catalyt 30.8 1.5E+02 0.0033 24.0 5.5 37 42-83 70-113 (258)
493 cd06301 PBP1_rhizopine_binding 30.8 1.2E+02 0.0027 23.5 5.1 39 145-183 19-63 (272)
494 PLN02808 alpha-galactosidase 30.5 1.1E+02 0.0024 26.4 4.9 41 145-185 100-155 (386)
495 PRK08072 nicotinate-nucleotide 30.5 3E+02 0.0066 22.5 10.3 82 97-186 176-263 (277)
496 cd06324 PBP1_ABC_sugar_binding 30.5 1.9E+02 0.0042 23.2 6.3 38 146-183 21-65 (305)
497 PRK05628 coproporphyrinogen II 30.5 1.2E+02 0.0027 25.6 5.3 55 43-103 77-138 (375)
498 PLN02424 ketopantoate hydroxym 30.3 1.6E+02 0.0034 24.9 5.6 44 143-186 22-65 (332)
499 TIGR02461 osmo_MPG_phos mannos 30.3 1.4E+02 0.003 23.3 5.2 34 144-177 20-54 (225)
500 COG5014 Predicted Fe-S oxidore 30.3 2.5E+02 0.0055 21.5 8.6 114 39-161 71-191 (228)
No 1
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=100.00 E-value=1.1e-36 Score=241.03 Aligned_cols=180 Identities=21% Similarity=0.238 Sum_probs=154.0
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhc---------ccCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchh
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQ---------KSHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKG 72 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~---------~~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~ 72 (208)
||++||+||++++|+||. .+.|+++||+||++ .+.++++|||+|+|+++++.++.++||+|..... ...
T Consensus 39 Dg~lvv~HD~~l~r~t~~-~~~i~~lt~~el~~l~~~~~~~~~~~~~~iptl~evl~~~~~~~~~l~iEiK~~~~~-~~~ 116 (229)
T cd08562 39 DGTLVLIHDDTLDRTTNG-SGAVTELTWAELAQLDAGSWFSPEFAGEPIPTLADVLELARELGLGLNLEIKPDPGD-EAL 116 (229)
T ss_pred CCCEEEEcCCCCccccCC-CceeecCcHHHHhhcCCCcccCCCCCCCCCCCHHHHHHHHHhcCCEEEEEECCCCCc-cHH
Confidence 999999999999999965 69999999999964 2356899999999999987667899999986533 236
Q ss_pred HHHHHHHHHHhcCC--cceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHH
Q 028497 73 LAKDILSVIERTKC--YNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRT 150 (208)
Q Consensus 73 ~~~~v~~~l~~~~~--~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 150 (208)
+++.+.+++++++. .+++++||+++.++.+++..|++++|++....+. .+.++.+..++..+.+.+..+++++++.
T Consensus 117 ~~~~v~~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 194 (229)
T cd08562 117 TARVVAAALRELWPHASKLLLSSFSLEALRAARRAAPELPLGLLFDTLPA--DWLELLAALGAVSIHLNYRGLTEEQVKA 194 (229)
T ss_pred HHHHHHHHHHHhcCCcCCEEEECCCHHHHHHHHHhCCCCcEEEEecCCCc--CHHHHHHHcCCeEEecChhhCCHHHHHH
Confidence 77889999999986 3457799999999999999999999998754332 1234445577777888888899999999
Q ss_pred HHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCCh
Q 028497 151 FHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 151 ~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P 185 (208)
+|++|++|++||+|+++++++++++||||||||+|
T Consensus 195 ~~~~g~~v~~wTvn~~~~~~~~~~~gVdgiiTD~p 229 (229)
T cd08562 195 LKDAGYKLLVYTVNDPARAAELLEWGVDAIFTDRP 229 (229)
T ss_pred HHHCCCEEEEEeCCCHHHHHHHHHCCCCEEEcCCC
Confidence 99999999999999999999999999999999998
No 2
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=1.7e-36 Score=242.67 Aligned_cols=187 Identities=16% Similarity=0.168 Sum_probs=150.4
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhc---------ccCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchh
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQ---------KSHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKG 72 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~---------~~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~ 72 (208)
||++||+||++++|+||. .+.|+++||+||+. .+.+++||||+|+|+++++.++.++||+|...... ..
T Consensus 48 Dg~lVV~HD~~l~R~t~~-~~~v~~~t~~el~~l~~~~~~~~~~~~~~iPtL~evl~~~~~~~~~l~iEiK~~~~~~-~~ 125 (249)
T PRK09454 48 DGEIFLLHDDTLERTSNG-WGVAGELTWQDLAQLDAGSWFSAAFAGEPLPTLSQVAARCRAHGMAANIEIKPTTGRE-AE 125 (249)
T ss_pred CCCEEEECCCcccccCCC-CCchhhCCHHHHHhcCCCCccCCCCCCCcCCCHHHHHHHHHhcCCEEEEEECCCCCcc-hh
Confidence 999999999999999964 69999999999964 23578999999999999765568999999754221 23
Q ss_pred HHHHHHHHHHhc--CC-cceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHH
Q 028497 73 LAKDILSVIERT--KC-YNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVR 149 (208)
Q Consensus 73 ~~~~v~~~l~~~--~~-~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 149 (208)
..+.+..+++.+ +. .+.+++||++..+++++++.|++++|+++...+. .+....+..++..+++.+..+++.+++
T Consensus 126 ~~~~v~~~~~~~~~~~~~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~ 203 (249)
T PRK09454 126 TGRVVALAARALWAGAAVPPLLSSFSEDALEAARQAAPELPRGLLLDEWPD--DWLELTRRLGCVSLHLNHKLLDEARVA 203 (249)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEeccccc--cHHHHHHhcCCeEEecccccCCHHHHH
Confidence 334444444443 33 3567899999999999999999999999863321 222333446666777888889999999
Q ss_pred HHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHHHH
Q 028497 150 TFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQRVM 192 (208)
Q Consensus 150 ~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~ 192 (208)
.+|++|++|++||+|+++++++++++|||||+||+|+.+...+
T Consensus 204 ~~~~~g~~v~~WTvn~~~~~~~l~~~GVdgIiTD~p~~~~~~~ 246 (249)
T PRK09454 204 ALKAAGLRILVYTVNDPARARELLRWGVDCICTDRIDLIGPDF 246 (249)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCChHhcCccc
Confidence 9999999999999999999999999999999999999876543
No 3
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=100.00 E-value=1.1e-36 Score=240.76 Aligned_cols=177 Identities=19% Similarity=0.269 Sum_probs=145.0
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc-cCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK-SHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSV 80 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~-~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~ 80 (208)
||++||+||++++|+||. .|.|+++|++||+.. ..+++||||+|+|++++++ ..++||||.. ..++.++++
T Consensus 40 Dg~~Vv~HD~~l~R~t~~-~g~v~~~t~~eL~~l~~~g~~iPtL~evl~~~~~~-~~l~iEiK~~------~~~~~~~~~ 111 (226)
T cd08568 40 DGKLVVLHDENLKRVGGV-DLKVKELTYKELKKLHPGGELIPTLEEVFRALPND-AIINVEIKDI------DAVEPVLEI 111 (226)
T ss_pred CCCEEEECCCcccccCCC-CceeecCCHHHHhhCCCCCCcCCCHHHHHHhcCCC-cEEEEEECCc------cHHHHHHHH
Confidence 999999999999999964 699999999999863 3378999999999999875 5899999974 356789999
Q ss_pred HHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeeccccc-------CHHHHHHHH
Q 028497 81 IERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLI-------DEKLVRTFH 152 (208)
Q Consensus 81 l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~ 152 (208)
++++++. +++++||+++.+++++++.|++++|++....+.......+.+..++..+++.+..+ ++++++.+|
T Consensus 112 l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 191 (226)
T cd08568 112 VEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELHEKLKLYSLHVPIDAIGYIGFEKFVELLRLLR 191 (226)
T ss_pred HHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCHHHHHHhcCCcEeccchhhhccccccccHHHHHHHH
Confidence 9999875 55779999999999999999999999986432111112333445555555443333 589999999
Q ss_pred hCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHH
Q 028497 153 GRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPIL 187 (208)
Q Consensus 153 ~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~ 187 (208)
++|++|++||+|+++.++++... |||||||+|+.
T Consensus 192 ~~G~~v~~WTvn~~~~~~~l~~~-vdgiiTD~p~~ 225 (226)
T cd08568 192 KLGLKIVLWTVNDPELVPKLKGL-VDGVITDDVEK 225 (226)
T ss_pred HCCCEEEEEcCCCHHHHHHHHhh-CCEEEccCccc
Confidence 99999999999999999999886 99999999975
No 4
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=2.2e-36 Score=239.99 Aligned_cols=184 Identities=20% Similarity=0.170 Sum_probs=148.3
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhccc----CCCcCCCHHHHHHHHhcCCceEEEEeecCCC-CCchhHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQKS----HDQVITTIEDALTLVSNSVRKVILDAKVGPP-SYEKGLAKD 76 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~~----~~~~iptL~evL~~~~~~~~~l~lEiK~~~~-~~~~~~~~~ 76 (208)
||++||+||++++|+|| +.|.|+++|++||+... .+++||||+|+|+++++..+.++||+|.... .....+++.
T Consensus 39 Dg~~Vv~HD~~l~r~t~-~~g~v~~~t~~el~~l~~~~~~~~~iptL~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~ 117 (235)
T cd08565 39 DGEVVVIHDPTLDRTTH-GTGAVRDLTLAERKALRLRDSFGEKIPTLEEVLALFAPSGLELHVEIKTDADGTPYPGAAAL 117 (235)
T ss_pred CCCEEEECCChhhcccC-CCCceeeccHHHHhcCCCCCCCCCCCCCHHHHHHHhhccCcEEEEEECCCCCCCccHHHHHH
Confidence 99999999999999995 46999999999998621 2689999999999998755789999997631 112368889
Q ss_pred HHHHHHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchh----hhHhhhhcCceEeeccc--ccCHHHHH
Q 028497 77 ILSVIERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFR----TNLLRIRKAGVVGVYHP--LIDEKLVR 149 (208)
Q Consensus 77 v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~v~ 149 (208)
++++++++++. +++|+||+++.+++++++ |++++|++.......... .......+++++++++. ..++++++
T Consensus 118 v~~~i~~~~~~~~v~~~Sf~~~~l~~~~~~-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 196 (235)
T cd08565 118 AAATLRRHGLLERSVLTSFDPAVLTEVRKH-PGVRTLGSVDEDMLERLGGELPFLTATALKAHIVAVEQSLLAATWELVR 196 (235)
T ss_pred HHHHHHhCCCcCCEEEEECCHHHHHHHHhC-CCCcEEEEeccccccccccccchhhhhhccCcEEccCcccccCCHHHHH
Confidence 99999999975 557899999999999999 999999987532111000 01123356666666554 57899999
Q ss_pred HHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHH
Q 028497 150 TFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILF 188 (208)
Q Consensus 150 ~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~ 188 (208)
.+| +|++|++||||+++++++++++||||||||+|+.+
T Consensus 197 ~~~-~g~~v~~WTVn~~~~~~~l~~~GVdgIiTD~P~~~ 234 (235)
T cd08565 197 AAV-PGLRLGVWTVNDDSLIRYWLACGVRQLTTDRPDLA 234 (235)
T ss_pred HHh-CCCEEEEEccCCHHHHHHHHHcCCCEEEeCCcccc
Confidence 987 49999999999999999999999999999999864
No 5
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=3.4e-36 Score=238.89 Aligned_cols=182 Identities=14% Similarity=0.280 Sum_probs=152.6
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhc---------ccCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchh
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQ---------KSHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKG 72 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~---------~~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~ 72 (208)
||++||+||.+++|+||. .+.|+++|++||+. .+.+++||||+|+|+++++.++.++||+|... ....
T Consensus 39 Dg~~Vv~HD~~l~r~t~~-~~~i~~~t~~el~~l~~~~~~~~~~~~~~iptL~evl~~~~~~~~~l~ieiK~~~--~~~~ 115 (233)
T cd08582 39 DGELVCVHDPTLKRTSGG-DGAVSDLTLAELRKLDIGSWKGESYKGEKVPTLEEYLAIVPKYGKKLFIEIKHPR--RGPE 115 (233)
T ss_pred CCCEEEecCCccccccCC-CcchhhCCHHHHhcCCCCcccCCCCCCCcCCCHHHHHHHHHhcCceEEEEeCCCc--cCcc
Confidence 999999999999999965 69999999999964 23568999999999999886679999999751 1237
Q ss_pred HHHHHHHHHHhcC-C-cceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccc-cCHHHHH
Q 028497 73 LAKDILSVIERTK-C-YNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPL-IDEKLVR 149 (208)
Q Consensus 73 ~~~~v~~~l~~~~-~-~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~ 149 (208)
+++.+++++++++ + .+++++||++..++++++..|+++++++............+.+..++..+++++.. .++++++
T Consensus 116 ~~~~~~~~~~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~ 195 (233)
T cd08582 116 AEEELLKLLKESGLLPEQIVIISFDAEALKRVRELAPTLETLWLRNYKSPKEDPRPLAKSGGAAGLDLSYEKKLNPAFIK 195 (233)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCHHHHHHHHHHCCCCcEEEEeccCccccchhHHHHhhCceEEcccccccCCHHHHH
Confidence 8889999999995 4 45678999999999999999999999988643211111123344667777777776 8999999
Q ss_pred HHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChH
Q 028497 150 TFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPI 186 (208)
Q Consensus 150 ~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~ 186 (208)
.+|++|++|++||+|+++++++++++|||||+||+|.
T Consensus 196 ~~~~~G~~v~~wTvn~~~~~~~l~~~GVdgi~TD~p~ 232 (233)
T cd08582 196 ALRDAGLKLNVWTVDDAEDAKRLIELGVDSITTNRPG 232 (233)
T ss_pred HHHHCCCEEEEEeCCCHHHHHHHHHCCCCEEEcCCCC
Confidence 9999999999999999999999999999999999996
No 6
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=5.4e-36 Score=240.90 Aligned_cols=187 Identities=15% Similarity=0.226 Sum_probs=153.7
Q ss_pred CceEEEEeCccchhhhCCC-cccccccCHHHhhcc-----------------cCCCcCCCHHHHHHHHhcCCceEEEEee
Q 028497 2 ESCWLFTTGRDLQRISGNI-TSKVGHLSMKEFAQK-----------------SHDQVITTIEDALTLVSNSVRKVILDAK 63 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g-~~~i~~~t~~eL~~~-----------------~~~~~iptL~evL~~~~~~~~~l~lEiK 63 (208)
||++||+||++|+|+||.- .+.|+++|++||+.. +.++++|||+|+|++++++ ..++||||
T Consensus 41 Dg~~Vv~HD~~l~r~t~~~~~g~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~-~~l~IEiK 119 (256)
T cd08601 41 DGVLVAMHDETLDRTTNIERPGPVKDYTLAEIKQLDAGSWFNKAYPEYARESYSGLKVPTLEEVIERYGGR-ANYYIETK 119 (256)
T ss_pred CCeEEEeCCCccccccCCCCCceeecCcHHHHHhcCCCccccccCccccccccCCccCCCHHHHHHHhccC-ceEEEEee
Confidence 9999999999999999640 489999999999641 3468899999999999886 59999999
Q ss_pred cCCCCCchhHHHHHHHHHHhcCCc------c-eEEEeeCHHHHHHHHhhccCCeEEEEEEecCCC--c-hhhhHhhhhcC
Q 028497 64 VGPPSYEKGLAKDILSVIERTKCY------N-CLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPST--G-FRTNLLRIRKA 133 (208)
Q Consensus 64 ~~~~~~~~~~~~~v~~~l~~~~~~------~-~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~--~-~~~~~~~~~~~ 133 (208)
.... + ..+++.+.++++++++. + .+|+||+++.++++++..|+++++++++..... . ......+. ++
T Consensus 120 ~~~~-~-~~~~~~v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~-~~ 196 (256)
T cd08601 120 SPDL-Y-PGMEEKLLATLDKYGLLTDNLKNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGAETYDKWLDEIKE-YA 196 (256)
T ss_pred CCCC-C-CCHHHHHHHHHHHcCCCcccCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCcccccchhHHHHHHh-cC
Confidence 7532 2 25788999999999864 4 467999999999999999999999987532111 0 11122232 55
Q ss_pred ceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHHHH
Q 028497 134 GVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQRVM 192 (208)
Q Consensus 134 ~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~ 192 (208)
..+++++..+++++++.+|++|++|++||+|+.+++++++++||||||||+|+.+++++
T Consensus 197 ~~~~~~~~~~~~~~v~~~~~~g~~v~~wTvn~~~~~~~l~~~Gvd~IiTD~p~~~~~~~ 255 (256)
T cd08601 197 IGIGPSIADADPWMVHLIHKKGLLVHPYTVNEKADMIRLINWGVDGMFTNYPDRLKEVL 255 (256)
T ss_pred eEeCCchhhcCHHHHHHHHHCCCEEEEEecCCHHHHHHHHhcCCCEEEeCCHHHHHHhh
Confidence 56666777889999999999999999999999999999999999999999999998875
No 7
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=100.00 E-value=3.3e-36 Score=246.96 Aligned_cols=185 Identities=17% Similarity=0.279 Sum_probs=148.0
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc-----------------cCCCcCCCHHHHHHHHhcCCceEEEEeec
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK-----------------SHDQVITTIEDALTLVSNSVRKVILDAKV 64 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~-----------------~~~~~iptL~evL~~~~~~~~~l~lEiK~ 64 (208)
||++||+||++++|+|| +.+.|+++|++||+.. +.+++||||+|+|+++++ ..++||||.
T Consensus 67 DG~lVV~HD~~l~Rtt~-~~g~V~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~g~~IPtL~EvL~~~~~--~~lnIEiK~ 143 (300)
T cd08612 67 DGQVVVSHDENLLRSCG-VDKLVSDLNYADLPPYLEKLEVTFSPGDYCVPKGSDRRIPLLEEVFEAFPD--TPINIDIKV 143 (300)
T ss_pred CCeEEEECCccccccCC-CCcccccCCHHHHhhccccccccccCCccccccCCCCCCCCHHHHHHhCCC--CeEEEEECC
Confidence 99999999999999996 4699999999999653 357899999999999965 589999997
Q ss_pred CCCCCchhHHHHHHHHHHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEe------------cCC----C----ch
Q 028497 65 GPPSYEKGLAKDILSVIERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMV------------DPS----T----GF 123 (208)
Q Consensus 65 ~~~~~~~~~~~~v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~------------~~~----~----~~ 123 (208)
.. ..+++.++++++++++. +++++||+++.++++++..|+++++++... .+. . ..
T Consensus 144 ~~----~~~~~~v~~~i~~~~~~~~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (300)
T cd08612 144 EN----DELIKKVSDLVRKYKREDITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKESFLEIP 219 (300)
T ss_pred Cc----hHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccCcccccccc
Confidence 64 25788999999999975 456799999999999999999999985421 000 0 00
Q ss_pred -hhhHhhhh---------cCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHHHHH
Q 028497 124 -RTNLLRIR---------KAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQRVMQ 193 (208)
Q Consensus 124 -~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~ 193 (208)
.....+.. +...+..++..+++++++.+|++|++|++||||+++++++++++||||||||+|..+.+++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD~P~~l~~~l~ 299 (300)
T cd08612 220 MPSIFLKTYFPKSMSRLNRFVLFLIDWLLMRPSLFRHLQKRGIQVYGWVLNDEEEFERAFELGADGVMTDYPTKLREFLD 299 (300)
T ss_pred chhhhhhhcccccccccccceecccccccCCHHHHHHHHHCCCEEEEeecCCHHHHHHHHhcCCCEEEeCCHHHHHHHHh
Confidence 00000111 11222234567799999999999999999999999999999999999999999999887763
No 8
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=5e-36 Score=237.06 Aligned_cols=177 Identities=9% Similarity=0.060 Sum_probs=141.0
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc-----------cCCCcCCCHHHHHHHHhc-CCceEEEEeecCCCCC
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK-----------SHDQVITTIEDALTLVSN-SVRKVILDAKVGPPSY 69 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~-----------~~~~~iptL~evL~~~~~-~~~~l~lEiK~~~~~~ 69 (208)
||++||+||++|+|+|| +.+.|.++|++||++. +.+++||||+|+|+++++ ..+.++||+|.....+
T Consensus 39 Dg~~Vv~HD~~l~r~t~-~~~~v~~~t~~el~~l~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~ 117 (229)
T cd08581 39 DGVPVVFHDDTLLRLTG-VEGLLHELEDAELDSLRVAEPARFGSRFAGEPLPSLAAVVQWLAQHPQVTLFVEIKTESLDR 117 (229)
T ss_pred CCcEEEECCCccccccC-CCceeccCCHHHHhhcccccCcccccccCCccCCCHHHHHHHHhhCCCceEEEEecCCcccc
Confidence 99999999999999995 4699999999999742 357899999999999987 3568999999864322
Q ss_pred chhHHHHHHHHHHhcC-C-cceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHH
Q 028497 70 EKGLAKDILSVIERTK-C-YNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKL 147 (208)
Q Consensus 70 ~~~~~~~v~~~l~~~~-~-~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (208)
....+.+.++++.++ + .+++++||++.++++++++ |.+++|++....+ .......+..+++++.+.+.. . ..
T Consensus 118 -~~~~~~v~~~~~~~~~~~~~~~i~SF~~~~l~~~r~~-~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-~-~~ 191 (229)
T cd08581 118 -FGLERVVDKVLRALPAVAAQRVLISFDYDLLALAKQQ-GGPRTGWVLPDWD--DASLAEADELQPDYLFCDKNL-L-PD 191 (229)
T ss_pred -cchhHHHHHHHHHHHhccCCeEEEeCCHHHHHHHHhc-CCCCeEEEeccCC--hHHHHHHHhhCCCEEeccccc-C-hh
Confidence 234455666666654 4 4667899999999999999 9999999875221 111233344677777766653 3 45
Q ss_pred HHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCCh
Q 028497 148 VRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 148 v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P 185 (208)
++.+|++|++|++||||+++++++++++||||||||+|
T Consensus 192 v~~~~~~G~~v~vWTVn~~~~~~~l~~~GVdgiiTD~P 229 (229)
T cd08581 192 TGDLWAGTWKWVIYEVNEPAEALALAARGVALIETDNI 229 (229)
T ss_pred hHHHHhCCceEEEEEcCCHHHHHHHHHhCCcEEEcCCC
Confidence 78899999999999999999999999999999999998
No 9
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=100.00 E-value=9e-36 Score=234.57 Aligned_cols=176 Identities=20% Similarity=0.419 Sum_probs=152.1
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc-----cCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK-----SHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKD 76 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~-----~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~ 76 (208)
||++||+||++++|+||. .+.|+++|++||++. +.++++|||+|+|++++++...++||||..... ...+++.
T Consensus 39 Dg~~vv~HD~~l~r~t~~-~~~v~~~t~~el~~l~~~~~~~~~~iptL~evl~~~~~~~~~l~iEiK~~~~~-~~~~~~~ 116 (220)
T cd08579 39 DGQFVVMHDANLKRLAGV-NKKVWDLTLEELKKLTIGENGHGAKIPSLDEYLALAKGLKQKLLIELKPHGHD-SPDLVEK 116 (220)
T ss_pred CCCEEEEcCCchhhccCC-CCChhhCCHHHHhcCcCccCCCCCcCCCHHHHHHHhhccCCeEEEEECCCCCC-CHHHHHH
Confidence 999999999999999965 699999999999752 356899999999999988556899999987532 2467889
Q ss_pred HHHHHHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCC
Q 028497 77 ILSVIERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRN 155 (208)
Q Consensus 77 v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g 155 (208)
++++++++++. +++|+||+++.++.+++..|++++|++...... .+ ...+++++++.+..+++++++.+|++|
T Consensus 117 v~~~l~~~~~~~~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~v~~~~~~G 190 (220)
T cd08579 117 FVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIKTGYILPFNIG-----NL-PKTNVDFYSIEYSTLNKEFIRQAHQNG 190 (220)
T ss_pred HHHHHHHcCCCcCeEEEeCCHHHHHHHHHHCCCCeEEEEEecccC-----cc-cccCceEEeeehhhcCHHHHHHHHHCC
Confidence 99999999874 557899999999999999999999998853221 11 335677788888889999999999999
Q ss_pred CeEEEeeCCCHHHHHHHHhCCCCEEEcCCh
Q 028497 156 KRVFAWTVDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 156 ~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P 185 (208)
++|++||+|+++++++++++|||+|+||+|
T Consensus 191 ~~v~~wtvn~~~~~~~~~~~Gvd~i~TD~P 220 (220)
T cd08579 191 KKVYVWTVNDPDDMQRYLAMGVDGIITDYP 220 (220)
T ss_pred CEEEEEcCCCHHHHHHHHHcCCCEEeCCCC
Confidence 999999999999999999999999999998
No 10
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=100.00 E-value=1.1e-35 Score=235.55 Aligned_cols=180 Identities=17% Similarity=0.305 Sum_probs=152.4
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc---------cCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchh
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK---------SHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKG 72 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~---------~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~ 72 (208)
||++||+||++++|+||. .+.|+++||+||+.. +.++++|||+|+|+.+++.+..++||+|.....+ ..
T Consensus 41 Dg~~Vv~HD~~l~r~t~~-~~~i~~~t~~el~~l~~~~~~~~~~~~~~iptL~evl~~~~~~~~~l~leiK~~~~~~-~~ 118 (230)
T cd08563 41 DGQLVVIHDETVDRTTNG-KGYVKDLTLEELKKLDAGSWFDEKFTGEKIPTLEEVLDLLKDKDLLLNIEIKTDVIHY-PG 118 (230)
T ss_pred CCCEEEECCCCcccccCC-CCchhhCCHHHHHhcCCCCccCccCCCCcCCCHHHHHHHHHhcCcEEEEEECCCCCcC-hh
Confidence 999999999999999965 699999999999741 2458999999999999865578999999865433 36
Q ss_pred HHHHHHHHHHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHH
Q 028497 73 LAKDILSVIERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTF 151 (208)
Q Consensus 73 ~~~~v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 151 (208)
+++.++++++++++. +.+++||+++.++++++..|++++|++....... ...+.+..++..+++++..+++++++.+
T Consensus 119 ~~~~l~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~i~~~ 196 (230)
T cd08563 119 IEKKVLELVKEYNLEDRVIFSSFNHESLKRLKKLDPKIKLALLYETGLQD--PKDYAKKIGADSLHPDFKLLTEEVVEEL 196 (230)
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCCHHHHHHHHHHCCCCcEEEEecCcccC--HHHHHHHhCCEEEccCchhcCHHHHHHH
Confidence 788999999999875 4567999999999999999999999988643211 1234444566667777778899999999
Q ss_pred HhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCCh
Q 028497 152 HGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 152 ~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P 185 (208)
|++|++|++||+|+++++++++++|||||+||+|
T Consensus 197 ~~~g~~v~~Wtvn~~~~~~~~~~~GVdgi~TD~P 230 (230)
T cd08563 197 KKRGIPVRLWTVNEEEDMKRLKDLGVDGIITNYP 230 (230)
T ss_pred HHCCCEEEEEecCCHHHHHHHHHCCCCEEeCCCC
Confidence 9999999999999999999999999999999998
No 11
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=100.00 E-value=5.9e-37 Score=245.81 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=141.5
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc-------------c--CCCcCCCHHHHHHHHhcCCceEEEEeecCC
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK-------------S--HDQVITTIEDALTLVSNSVRKVILDAKVGP 66 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~-------------~--~~~~iptL~evL~~~~~~~~~l~lEiK~~~ 66 (208)
||++||+||++++|+|| |.|.|+++||+||+.. + .+++||||+|+|+++++ ..++||||...
T Consensus 41 Dg~lVv~HD~~l~R~t~-~~g~v~~~t~~el~~ld~g~~~~~~~~~~~~~~~~~iPtL~evl~~~~~--~~l~iEiK~~~ 117 (263)
T cd08580 41 DGVPVLYRPSDLKSLTN-GSGAVSAYTAAQLATLNAGYNFKPEGGYPYRGKPVGIPTLEQVLRAFPD--TPFILDMKSLP 117 (263)
T ss_pred CCCEEEeCCCchhcccC-CCCChhhCcHHHHhcCCCccccccccCcccCCCCCcCccHHHHHHhhcC--CeEEEEECCCC
Confidence 99999999999999995 5799999999999752 1 23589999999999986 47999999764
Q ss_pred CCCchhHHHHHHHHHHhcCCc-ceEEEeeCHHHHHHHHhhcc-------CCeEEEEEEec---CCCc----hhh---hHh
Q 028497 67 PSYEKGLAKDILSVIERTKCY-NCLVWAKSDNLVRDIMRLSS-------NVTAGYIIMVD---PSTG----FRT---NLL 128 (208)
Q Consensus 67 ~~~~~~~~~~v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p-------~~~~~~l~~~~---~~~~----~~~---~~~ 128 (208)
. ..+++.++++++++++. +++|+||+++.+++++++.| +++++++.... +... .+. .+.
T Consensus 118 ~---~~~~~~v~~~i~~~~~~~~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (263)
T cd08580 118 A---DPQAKAVARVLERENAWSRVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELR 194 (263)
T ss_pred c---HHHHHHHHHHHHhcCCCCCEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhcccccc
Confidence 2 26889999999999985 55789999999999999999 45555553210 0000 000 000
Q ss_pred -------h-hhcCceEeecccccCHHHHHHHHhC-CCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHH
Q 028497 129 -------R-IRKAGVVGVYHPLIDEKLVRTFHGR-NKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILF 188 (208)
Q Consensus 129 -------~-~~~~~~~~~~~~~~~~~~v~~~~~~-g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~ 188 (208)
. ..++..+..++..+++++++.+|++ |++|++||||++++|++++++||||||||+|+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~l~t~~~V~~~h~~~gl~V~~WTVN~~~~~~~l~~~GVDgIiTD~P~~~ 263 (263)
T cd08580 195 RKVTVVETFTLGEGRSPVQATLWTPAAVDCFRRNSKVKIVLFGINTADDYRLAKCLGADAVMVDSPAAM 263 (263)
T ss_pred ccchheeeecccccccccccccCCHHHHHHHHhcCCcEEEEEEeCCHHHHHHHHHcCCCEEEeCCcccC
Confidence 0 0222323345678899999999999 9999999999999999999999999999999863
No 12
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=100.00 E-value=2.5e-35 Score=241.68 Aligned_cols=184 Identities=13% Similarity=0.200 Sum_probs=151.4
Q ss_pred CceEEEEeCccchhhhCCCccc--------ccccCHHHhhcc-------------------------cCCCcCCCHHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITSK--------VGHLSMKEFAQK-------------------------SHDQVITTIEDAL 48 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~--------i~~~t~~eL~~~-------------------------~~~~~iptL~evL 48 (208)
||++||+||++|+|+|| +.|. |+++|++||+.. +.+++||||+|+|
T Consensus 67 DG~lVV~HD~tL~Rtt~-~~g~~~~~~~~~V~dlTlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~ge~IPTL~EvL 145 (315)
T cd08609 67 DGVPFLMHDEGLLRTTN-VKDVFPGRDAAGSNNFTWTELKTLNAGSWFLERRPFWTLSSLSEEDRREADNQTVPSLSELL 145 (315)
T ss_pred CCCEEEeCCCcccccCC-CCCCccccccccHhhCCHHHHhhCCCCcccCcccccccccccccccccccCCCCCCCHHHHH
Confidence 99999999999999995 3453 999999999641 2468999999999
Q ss_pred HHHhcCCceEEEEeecCCC--CCchhHHHHHHHHHHhcCCcceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhh
Q 028497 49 TLVSNSVRKVILDAKVGPP--SYEKGLAKDILSVIERTKCYNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTN 126 (208)
Q Consensus 49 ~~~~~~~~~l~lEiK~~~~--~~~~~~~~~v~~~l~~~~~~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~ 126 (208)
+.+++.+..++||||.... .....+.+.++++++++++....+.++++..++.++++.|++++++... . .
T Consensus 146 ~~~~~~~~~l~IEIK~~~~~~~~~~~f~~~vl~~i~~~~~~~~~v~~~~~~~l~~~~~~~P~~~~~~~~~----~----~ 217 (315)
T cd08609 146 DLAKKHNVSIMFDLRNENNSHVFYSSFVFYTLETILKLGIPPDKVWWLPDEYRHDVMKMEPGFKQVYGRQ----K----E 217 (315)
T ss_pred HHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHHHHHHcCCCcceEEEeCHHHHHHHHHhCcCceeecccc----h----h
Confidence 9998765689999997631 1123677889999999997533333457888999999999999875431 0 1
Q ss_pred HhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHHHHHHH
Q 028497 127 LLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQRVMQDI 195 (208)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~~~ 195 (208)
. ...+++++++++..+++++++.+|++|++|++||||+++++++++++||||||||+|+.+.+.+++.
T Consensus 218 ~-~~~~~~~i~~~~~~l~~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~~GVDgIiTD~P~~l~~~~~~~ 285 (315)
T cd08609 218 M-LMDGGNFMNLPYQDLSALEIKELRKDNVSVNLWVVNEPWLFSLLWCSGVSSVTTNACQLLKDMSKPI 285 (315)
T ss_pred h-HhcCCeEEecccccCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHhcCCCEEEcCCHHHHHHhhhhh
Confidence 1 1246777888888999999999999999999999999999999999999999999999999998864
No 13
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=100.00 E-value=1.2e-35 Score=243.37 Aligned_cols=186 Identities=13% Similarity=0.157 Sum_probs=151.0
Q ss_pred CceEEEEeCccchhhhCCCcc--------cccccCHHHhhcc-------------------------cCCCcCCCHHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITS--------KVGHLSMKEFAQK-------------------------SHDQVITTIEDAL 48 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~--------~i~~~t~~eL~~~-------------------------~~~~~iptL~evL 48 (208)
||++||+||++|+|+||. .+ .|+++||+||+.. +.+++||||+|+|
T Consensus 63 DG~lVV~HD~tL~Rtt~~-~~~~~~~~~~~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~~e~IPTLeEvL 141 (316)
T cd08610 63 DGVPFLMHDFTLKRTTNI-GEVQPESACENPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERARNQSIPKLSNFL 141 (316)
T ss_pred CCCEEEeCCCccccccCC-CCccccccccchhhCCHHHHhhCCCCCccCcccccccccccccccccccCCCCCCCHHHHH
Confidence 999999999999999954 33 6999999999641 1368999999999
Q ss_pred HHHhcCCceEEEEeecCCC--CCchhHHHHHHHHH-HhcCCcceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhh
Q 028497 49 TLVSNSVRKVILDAKVGPP--SYEKGLAKDILSVI-ERTKCYNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRT 125 (208)
Q Consensus 49 ~~~~~~~~~l~lEiK~~~~--~~~~~~~~~v~~~l-~~~~~~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~ 125 (208)
+++++....++||||.... .+...+++.+++.+ +++++.+.+++||++..++++++..|++++++... .+ ..
T Consensus 142 ~~~~~~~~~l~IEIK~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~v~sf~~~~l~~~~~~~P~~~~~l~~~-~~----~~ 216 (316)
T cd08610 142 RLAEKENKLVIFDLYRPPPKHPYRHTWIRRVLEVILNEVGIEQHLVLWLPAHDRQYVQSVAPGFKQHVGRK-VP----IE 216 (316)
T ss_pred HHhHhcCceEEEEeCCCcccCcchhHHHHHHHHHHHHHcCCCCCEEEEcCHHHHHHHHHHCcchhhhhccc-cc----HH
Confidence 9998755689999996421 12224677777776 67788666666799999999999999999775432 11 11
Q ss_pred hHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHHHHHH
Q 028497 126 NLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQRVMQD 194 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~~ 194 (208)
.+ ...+++.+++++..+++++++.+|++|++|++||||+++++++++++||||||||+|+.+.++.+.
T Consensus 217 ~l-~~~~~~~l~~~~~~l~~~~v~~a~~~Gl~V~vWTVNd~~~~~~l~~~GVDgIiTD~P~~l~~~~~~ 284 (316)
T cd08610 217 TL-LKNNISILNLAYKKLFSNDIRDYKAANIHTNVYVINEPWLFSLAWCSGIHSVTTNNIHLLKQLDHP 284 (316)
T ss_pred HH-HHcCCeEEccchhhCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHhCCcCEEEeCCHHHHHHhhch
Confidence 22 335778888888889999999999999999999999999999999999999999999999877664
No 14
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=100.00 E-value=2.4e-35 Score=236.28 Aligned_cols=174 Identities=15% Similarity=0.223 Sum_probs=144.3
Q ss_pred CceEEEEeCccchhhhCCCcc--------cccccCHHHhhc-------------------------ccCCCcCCCHHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITS--------KVGHLSMKEFAQ-------------------------KSHDQVITTIEDAL 48 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~--------~i~~~t~~eL~~-------------------------~~~~~~iptL~evL 48 (208)
||++||+||++|+|+||. .+ .|+++||+||+. .+.+++||||+|+|
T Consensus 42 Dg~lVV~HD~~l~Rtt~~-~g~~~~~~~~~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~~~IPtL~evl 120 (252)
T cd08574 42 DGVPFLMHDRTLRRTTNV-ADVFPERAHERASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAGNQSIPSLAELL 120 (252)
T ss_pred CCcEEEeCCCcccccCCC-CcccccccccchhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcCCCCCCCHHHHH
Confidence 999999999999999954 45 689999999963 23568999999999
Q ss_pred HHHhcCCceEEEEeecCCC--CCchhHHHHHHHHHHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhh
Q 028497 49 TLVSNSVRKVILDAKVGPP--SYEKGLAKDILSVIERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRT 125 (208)
Q Consensus 49 ~~~~~~~~~l~lEiK~~~~--~~~~~~~~~v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~ 125 (208)
+++++.+..++||||.... .+...+++.++++++++++. +++++||+.. +++++++.|+++++++.... ..
T Consensus 121 ~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~~~~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~~-----~~ 194 (252)
T cd08574 121 RLAKKHNKSVIFDLRRPPPNHPYYQSYVNITLDTILASGIPQHQVFWLPDEY-RALVRKVAPGFQQVSGRKLP-----VE 194 (252)
T ss_pred HHHHHcCCeEEEEecCCcccCccHHHHHHHHHHHHHHcCCCcccEEEccHHH-HHHHHHHCCCCeEeeccccc-----hH
Confidence 9998755689999997542 12236888999999999974 5567777654 79999999999998654211 11
Q ss_pred hHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 126 NLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
.+ +..+++++++++..+++++++.+|++|++|++||||+++++++++++||||||||
T Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~WTVn~~~~~~~l~~~GVdgIiTD 251 (252)
T cd08574 195 SL-RENGISRLNLEYSQLSAQEIREYSKANISVNLYVVNEPWLYSLLWCSGVQSVTTN 251 (252)
T ss_pred HH-HhcCCeEEccCcccCCHHHHHHHHHCCCEEEEEccCCHHHHHHHHHcCCCEEecC
Confidence 22 3367888888889999999999999999999999999999999999999999999
No 15
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=100.00 E-value=7.4e-35 Score=234.14 Aligned_cols=177 Identities=16% Similarity=0.213 Sum_probs=148.1
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhc-----------ccCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCc
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQ-----------KSHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYE 70 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~-----------~~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~ 70 (208)
||++||+||++++|+|| +.+.|+++||+||+. .+.+++||||+|+|+++++....++||+|...
T Consensus 39 Dg~~Vv~HD~~l~R~t~-~~g~v~~~t~~el~~l~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~l~iEiK~~~---- 113 (258)
T cd08573 39 DGVPVLMHDDTVDRTTD-GTGLVAELTWEELRKLNAAAKHRLSSRFPGEKIPTLEEAVKECLENNLRMIFDVKSNS---- 113 (258)
T ss_pred CCcEEEECCCCcceecC-CCceEecCcHHHHhhCCCCCCCCCccccCCCCCCCHHHHHHHHHhcCCEEEEEeCCCc----
Confidence 99999999999999995 469999999999974 13468999999999999865568999999764
Q ss_pred hhHHHHHHHHHHhcC-Cc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCC-------c----hhh----h-------
Q 028497 71 KGLAKDILSVIERTK-CY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPST-------G----FRT----N------- 126 (208)
Q Consensus 71 ~~~~~~v~~~l~~~~-~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~-------~----~~~----~------- 126 (208)
..+++.+++++++++ +. +++++||++..++++++..|++++|+++...... . .+. .
T Consensus 114 ~~~~~~v~~~l~~~~~~~~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (258)
T cd08573 114 SKLVDALKNLFKKYPGLYDKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILE 193 (258)
T ss_pred HHHHHHHHHHHHHCCCccCCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHHHHHHHHHHHH
Confidence 267888999999998 75 5578999999999999999999999987421100 0 000 0
Q ss_pred ------HhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHh-CCCCEEEcCC
Q 028497 127 ------LLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLH-ERVDAVVTSN 184 (208)
Q Consensus 127 ------~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~-~gvd~i~TD~ 184 (208)
+.+..+++++++++..+++++++.+|++|++|++||||++++++++++ +||| ||||+
T Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~G~~v~vWTVn~~~~~~~l~~~~GVd-iiTD~ 257 (258)
T cd08573 194 WSLHSWLPYFLGVSALLIHKDDISSAYVRYWRARGIRVIAWTVNTPTEKQYFAKTLNVP-YITDS 257 (258)
T ss_pred HHHHhhhhhhcCeeEEEechHhcCHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHhCCC-eecCC
Confidence 002357788888889999999999999999999999999999999999 9999 99997
No 16
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=9.5e-35 Score=234.66 Aligned_cols=185 Identities=17% Similarity=0.204 Sum_probs=154.6
Q ss_pred CceEEEEeCccch--------hhhCCCcccccccCHHHhhcc---------------cCCCcCCCHHHHHHHHhcCCceE
Q 028497 2 ESCWLFTTGRDLQ--------RISGNITSKVGHLSMKEFAQK---------------SHDQVITTIEDALTLVSNSVRKV 58 (208)
Q Consensus 2 Dg~~Vv~HD~~l~--------r~tg~g~~~i~~~t~~eL~~~---------------~~~~~iptL~evL~~~~~~~~~l 58 (208)
||++||+||.+++ |++| +.+.|+++|++||++. +.+++||||+|+|+++++. +.+
T Consensus 46 Dg~lVv~HD~~~~~~~~~~~~~~~~-~~~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~-~~l 123 (265)
T cd08564 46 DNEIVVFHGTEDDTNPDTSIQLDDS-GFKNINDLSLDEITRLHFKQLFDEKPCGADEIKGEKIPTLEDVLVTFKDK-LKY 123 (265)
T ss_pred CCCEEEEcCCccccCccccccccCC-CccchhhCcHHHHhhcccCcccccCcccccccCCccCCCHHHHHHHhccC-cEE
Confidence 9999999998655 4674 4699999999999741 3568999999999999885 689
Q ss_pred EEEeecCCCCCchhHHHHHHHHHHhcCCc-ceEEEeeCH-HHHHHHHhhccC---CeEEEEEEecCCC--chhhhHhhhh
Q 028497 59 ILDAKVGPPSYEKGLAKDILSVIERTKCY-NCLVWAKSD-NLVRDIMRLSSN---VTAGYIIMVDPST--GFRTNLLRIR 131 (208)
Q Consensus 59 ~lEiK~~~~~~~~~~~~~v~~~l~~~~~~-~~ii~Sf~~-~~l~~l~~~~p~---~~~~~l~~~~~~~--~~~~~~~~~~ 131 (208)
+||||... ..+++.++++++++++. +++|+||++ +.+++++++.|+ +++|+++...++. ..+....+..
T Consensus 124 ~iEiK~~~----~~~~~~v~~~l~~~~~~~~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (265)
T cd08564 124 NIELKGRE----VGLGERVLNLVEKYGMILQVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKSPSPLDFLEQAKYY 199 (265)
T ss_pred EEEeCCCc----hhHHHHHHHHHHHcCCCCCEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCCcccccHHHHHHhc
Confidence 99999754 26788999999999975 456799999 999999999998 9999998643211 1122333446
Q ss_pred cCceEeecccccCHHHHHHHHhCCCeEEEee----CCCHHHHHHHHhCCCCEEEcCChHHHHHHH
Q 028497 132 KAGVVGVYHPLIDEKLVRTFHGRNKRVFAWT----VDDEDSMRKMLHERVDAVVTSNPILFQRVM 192 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wt----v~~~~~~~~~~~~gvd~i~TD~P~~~~~~~ 192 (208)
++..+.+.+..+++++++.+|++|++|++|| +|+++++++++++||||||||+|..+.+++
T Consensus 200 ~~~~v~~~~~~~~~~~v~~~~~~Gl~v~~wT~~~~~n~~~~~~~l~~~GvdgiiTD~p~~~~~~~ 264 (265)
T cd08564 200 NATWVNFSYDFWTEEFVKKAHENGLKVMTYFDEPVNDNEEDYKVYLELGVDCICPNDPVLLVNFL 264 (265)
T ss_pred CCceeeechhhhhHHHHHHHHHcCCEEEEecCCCCCCCHHHHHHHHHcCCCEEEcCCHHHHHHhh
Confidence 7777888888889999999999999999999 788999999999999999999999998876
No 17
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=100.00 E-value=6.7e-35 Score=238.81 Aligned_cols=183 Identities=15% Similarity=0.187 Sum_probs=146.3
Q ss_pred CceEEEEeCccchhhhCCCc------------ccccccCHHHhhcc-----------------cCCCcCCCHHHHHHHHh
Q 028497 2 ESCWLFTTGRDLQRISGNIT------------SKVGHLSMKEFAQK-----------------SHDQVITTIEDALTLVS 52 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~------------~~i~~~t~~eL~~~-----------------~~~~~iptL~evL~~~~ 52 (208)
||++||+||++|+|+|| +. +.|.++|++||+.. ..+++||||+|+|++++
T Consensus 41 Dg~lVv~HD~~l~r~t~-~~~~~~~~~~~~~~~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~ 119 (296)
T cd08559 41 DGVLVARHDPTLDRTTN-VAEHFPFRGRKDTGYFVIDFTLAELKTLRAGSWFNQRYPERAPSYYGGFKIPTLEEVIELAQ 119 (296)
T ss_pred CCCEEEeccchhhcCCC-ccccccccccCCCCeeeecCcHHHHhcCCCCCcccccccccCccccCCCCcCCHHHHHHHHH
Confidence 99999999999999995 46 79999999999741 13688999999999998
Q ss_pred cC------CceEEEEeecCCCC--CchhHHHHHHHHHHhcCCc----ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCC
Q 028497 53 NS------VRKVILDAKVGPPS--YEKGLAKDILSVIERTKCY----NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPS 120 (208)
Q Consensus 53 ~~------~~~l~lEiK~~~~~--~~~~~~~~v~~~l~~~~~~----~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~ 120 (208)
+. .++++||||..... ....+++.++++++++++. +++|+||++++|++++++.|++++++++.....
T Consensus 120 ~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~ 199 (296)
T cd08559 120 GLNKSTGRNVGIYPETKHPTFHKQEGPDIEEKLLEVLKKYGYTGKNDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDW 199 (296)
T ss_pred hhhhccCCcceEEEEecChhhhhhcCCCHHHHHHHHHHHcCCCCCCCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 72 46899999975321 0136788999999999874 457799999999999999999999999864321
Q ss_pred Cc----------hhhhHhhh--hcCceEeecccccC----------HHHHHHHHhCCCeEEEeeCCC---------HHHH
Q 028497 121 TG----------FRTNLLRI--RKAGVVGVYHPLID----------EKLVRTFHGRNKRVFAWTVDD---------EDSM 169 (208)
Q Consensus 121 ~~----------~~~~~~~~--~~~~~~~~~~~~~~----------~~~v~~~~~~g~~v~~wtv~~---------~~~~ 169 (208)
.. ......+. .+++.+++.+..++ +++++.+|++|++|++||||+ ++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~~~~~~~~~~~~~~ 279 (296)
T cd08559 200 AETDKKYTYAWLTTDAGLKEIAKYADGIGPWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRNENLFLAPDFKQDM 279 (296)
T ss_pred CccccccccchhcCHHHHHHHHHHhhhhCCCHHhccccccccccCchHHHHHHHHcCCEEEEEEecCcccccccccccCH
Confidence 10 00111111 25566666665555 899999999999999999999 9999
Q ss_pred HHHHhC-CCCEEEcCCh
Q 028497 170 RKMLHE-RVDAVVTSNP 185 (208)
Q Consensus 170 ~~~~~~-gvd~i~TD~P 185 (208)
++++++ ||||||||+|
T Consensus 280 ~~l~~~~GVdgIiTD~P 296 (296)
T cd08559 280 DALYNAAGVDGVFTDFP 296 (296)
T ss_pred HHHHHHhCCCEEEcCCC
Confidence 999998 9999999998
No 18
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=5.1e-34 Score=230.19 Aligned_cols=185 Identities=18% Similarity=0.281 Sum_probs=151.6
Q ss_pred CceEEEEeCccchhhhC---CCc------ccccccCHHHhhcc--------------------cCCCcCCCHHHHHHHHh
Q 028497 2 ESCWLFTTGRDLQRISG---NIT------SKVGHLSMKEFAQK--------------------SHDQVITTIEDALTLVS 52 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg---~g~------~~i~~~t~~eL~~~--------------------~~~~~iptL~evL~~~~ 52 (208)
||++||+||.+++|+|+ +|. +.|+++|++||+.. +.+++||||+|+|++++
T Consensus 41 Dg~~Vv~HD~~l~r~~~r~~~~~~~~~~~~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~ 120 (263)
T cd08567 41 DGVIVVSHDPKLNPDITRDPDGAWLPYEGPALYELTLAEIKQLDVGEKRPGSDYAKLFPEQIPVPGTRIPTLEEVFALVE 120 (263)
T ss_pred CCCEEEeCCCccCcceeecCCCCcccccCcchhcCCHHHHHhcCCCccccCcCcccCCCccccCccccCCCHHHHHHHHH
Confidence 99999999999997542 223 78999999999742 12478999999999998
Q ss_pred cC---CceEEEEeecCCCC-----CchhHHHHHHHHHHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCch
Q 028497 53 NS---VRKVILDAKVGPPS-----YEKGLAKDILSVIERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGF 123 (208)
Q Consensus 53 ~~---~~~l~lEiK~~~~~-----~~~~~~~~v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~ 123 (208)
+. .+.++||+|..... ....+++.++++++++++. +++|+||+++.++.++++.|+++++++...... ..
T Consensus 121 ~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~-~~ 199 (263)
T cd08567 121 KYGNQKVRFNIETKSDPDRDILHPPPEEFVDAVLAVIRKAGLEDRVVLQSFDWRTLQEVRRLAPDIPTVALTEETTL-GN 199 (263)
T ss_pred HhccCCceEEEEEcCCCCccccCccHHHHHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHHCCCccEEEEecCCcc-cC
Confidence 74 36899999976432 1135788999999999875 557799999999999999999999998864321 11
Q ss_pred hhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHH
Q 028497 124 RTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPIL 187 (208)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~ 187 (208)
.....+..|++++++.+..+++++++.+|++|++|++||+|+++++++++++|||||+||+|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~G~~v~vwtvn~~~~~~~~~~~Gvdgi~TD~P~~ 263 (263)
T cd08567 200 LPRAAKKLGADIWSPYFTLVTKELVDEAHALGLKVVPWTVNDPEDMARLIDLGVDGIITDYPDL 263 (263)
T ss_pred HHHHHHHhCCcEEecchhhcCHHHHHHHHHCCCEEEEecCCCHHHHHHHHHcCCCEEEcCCCCC
Confidence 1233455788888877888999999999999999999999999999999999999999999963
No 19
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=100.00 E-value=8.7e-35 Score=234.61 Aligned_cols=180 Identities=19% Similarity=0.269 Sum_probs=142.5
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc------------------cCCCcCCCHHHHHHHHhcCCceEEEEee
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK------------------SHDQVITTIEDALTLVSNSVRKVILDAK 63 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~------------------~~~~~iptL~evL~~~~~~~~~l~lEiK 63 (208)
||++||+||.+++|+|| +.+.|+++|++||+.. +.+++||||+|+|+.+++ ..++||+|
T Consensus 41 Dg~~Vv~HD~~l~r~t~-~~~~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~l~iEiK 117 (264)
T cd08575 41 DGQVVVFHDWDLDRLTG-GSGLVSDLTYAELPPLDAGYGYTFDGGKTGYPRGGGDGRIPTLEEVFKAFPD--TPINIDIK 117 (264)
T ss_pred CCCEEEEcCCcccceeC-CceEEecCCHHHHHhcccCCccccCCCCcccccCCCCCcCCcHHHHHHhCCC--CeEEEEEC
Confidence 99999999999999996 4699999999999641 235789999999999976 58999999
Q ss_pred cCCCCCchhHHHHHHHHHHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecC-------CCc-hhhhHhh-----
Q 028497 64 VGPPSYEKGLAKDILSVIERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDP-------STG-FRTNLLR----- 129 (208)
Q Consensus 64 ~~~~~~~~~~~~~v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~-------~~~-~~~~~~~----- 129 (208)
.... ..+++.++++++++++. +++++||++++++++++..|+++++++..... ... .+....+
T Consensus 118 ~~~~---~~~~~~v~~~i~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (264)
T cd08575 118 SPDA---EELIAAVLDLLEKYKREDRTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLALGYTGLLPFVPIKESFFE 194 (264)
T ss_pred CCCH---HHHHHHHHHHHHhccccceEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHHhheeccCCCCCCCceEEE
Confidence 7642 36888999999999975 45679999999999999999988765542100 000 0000000
Q ss_pred -----------hhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHH
Q 028497 130 -----------IRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPIL 187 (208)
Q Consensus 130 -----------~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~ 187 (208)
..++..+++++...++++++.+|++|++|++||||+++++++++++||||||||+|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~~GVdgIiTD~P~~ 263 (264)
T cd08575 195 IPRPVIVLETFTLGEGASIVAALLWWPNLFDHLRKRGIQVYLWVLNDEEDFEEAFDLGADGVMTDSPTK 263 (264)
T ss_pred eecccEEEEEeccccccchhhhhhcCHHHHHHHHhcCCcEEEEEECCHHHHHHHHhcCCCEEEeCCccc
Confidence 0122334445667899999999999999999999999999999999999999999985
No 20
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=100.00 E-value=4.9e-34 Score=232.47 Aligned_cols=182 Identities=12% Similarity=0.081 Sum_probs=144.8
Q ss_pred CceEEEEeCccchhhhCCC---cccccccCHHHhhccc----------------------------CCCcCCCHHHHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNI---TSKVGHLSMKEFAQKS----------------------------HDQVITTIEDALTL 50 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g---~~~i~~~t~~eL~~~~----------------------------~~~~iptL~evL~~ 50 (208)
||++||+||++|+|+++ | .+.|.++||+||+..- .+++||||+|+|+.
T Consensus 51 Dg~~VV~HD~~l~r~~~-g~~~~~~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~ 129 (282)
T cd08605 51 DGVPVIWHDDFIVVERG-GEVESSRIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSE 129 (282)
T ss_pred CCeEEEECCCceecccC-CCcCccchhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHh
Confidence 99999999999999995 3 4899999999997411 15789999999999
Q ss_pred HhcCCceEEEEeecCCCCCc-----hhHHHHHHHHHHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCC--Cc
Q 028497 51 VSNSVRKVILDAKVGPPSYE-----KGLAKDILSVIERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPS--TG 122 (208)
Q Consensus 51 ~~~~~~~l~lEiK~~~~~~~-----~~~~~~v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~--~~ 122 (208)
+++. +.++||||....... ...++.++++++++++. +++|+||++.+++.++++.|++++++++...+. ..
T Consensus 130 ~~~~-~~l~IEiK~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~ 208 (282)
T cd08605 130 VPPS-LGFNIELKFGDDNKTEAEELVRELRAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHND 208 (282)
T ss_pred CCCC-ccEEEEEecCccccchHHHHHHHHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccC
Confidence 9775 689999997542211 12346788888888875 457799999999999999999999999853221 10
Q ss_pred h----h---hhHhhhhcCceEeecccc--cCHHHHHHHHhCCCeEEEeeC--CCHHHHHHHHhCCCCEEEcCCh
Q 028497 123 F----R---TNLLRIRKAGVVGVYHPL--IDEKLVRTFHGRNKRVFAWTV--DDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 123 ~----~---~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~g~~v~~wtv--~~~~~~~~~~~~gvd~i~TD~P 185 (208)
. . ..+++..++..+++.+.. .++++++.+|++|++|++||+ |+++++++++++||||||||++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~Gl~v~vWTv~~n~~~~~~~l~~~GVdgIiTD~~ 282 (282)
T cd08605 209 PRRNSIEAAIQVALEGGLQGIVSEVKVLLRNPTAVSLVKASGLELGTYGKLNNDAEAVERQADLGVDGVIVDHV 282 (282)
T ss_pred chhhhHHHHHHHHHHcCCceEEecHHHhhcCcHHHHHHHHcCcEEEEeCCCCCCHHHHHHHHHcCCCEEEeCCC
Confidence 0 0 123344667777766554 589999999999999999999 9999999999999999999986
No 21
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=100.00 E-value=6.2e-34 Score=235.81 Aligned_cols=184 Identities=13% Similarity=0.154 Sum_probs=148.0
Q ss_pred CceEEEEeCccchhhhCCCcccc--------cccCHHHhhcc-------------------------cCCCcCCCHHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITSKV--------GHLSMKEFAQK-------------------------SHDQVITTIEDAL 48 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i--------~~~t~~eL~~~-------------------------~~~~~iptL~evL 48 (208)
||++||+||++|+|||| +.+.| +++||+||++. +.+++||||+|+|
T Consensus 42 DGvlVV~HD~tL~RtTn-~~g~v~~~~~~~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~ge~IPTL~EvL 120 (351)
T cd08608 42 DGVPFLMHDRTLRRTTN-VDRVFPERQYEDASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAGNQSVCSLAELL 120 (351)
T ss_pred CCcEEEECCCccccccC-CCCccccccccccccCCHHHHhhCCCCcccccCCccccccccccccccccCCCCCCCHHHHH
Confidence 99999999999999995 46776 67999999641 2368999999999
Q ss_pred HHHhcCCceEEEEeecCCC--CCchhHHHHHHHHHHhcCCc-ceE-EEeeCHHHHHHHHhhccCCeEEEEEEecCCCchh
Q 028497 49 TLVSNSVRKVILDAKVGPP--SYEKGLAKDILSVIERTKCY-NCL-VWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFR 124 (208)
Q Consensus 49 ~~~~~~~~~l~lEiK~~~~--~~~~~~~~~v~~~l~~~~~~-~~i-i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~ 124 (208)
+++++.+..++||||.... .+...+++.+++++.++++. +++ ++||+. .+.++++.|+++++... . . .
T Consensus 121 ~~~~~~~~~l~iEIK~~~~~~~~~~~~~~~v~~~i~~~~~~~~~vi~sSf~~--~~~vr~l~P~~~~~~~~---~-~-~- 192 (351)
T cd08608 121 ELAKRYNASVLLNLRRPPPNHPYHQSWINLTLKTILASGIPQEQVMWTPDWQ--RKLVRKVAPGFQQTSGE---K-L-P- 192 (351)
T ss_pred HHHHhcCCeEEEEECCCcccCcchhHHHHHHHHHHHHhCCCcCeEEEEcchH--HHHHHHHCCCCeeeccc---c-c-h-
Confidence 9998765689999997532 12235677888889888874 444 466655 37899999999975321 1 1 1
Q ss_pred hhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHHHHHH
Q 028497 125 TNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQRVMQD 194 (208)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~~ 194 (208)
....+..+++.+++++..+++++++.+|++|++|++||||+++.+++++++||||||||+|+.+.++...
T Consensus 193 ~~~~~~~~~~~l~~~~~~lt~~~v~~~~~~Gl~V~vWTVN~~~~~~~l~~~GVdgIiTD~P~~l~~l~~~ 262 (351)
T cd08608 193 VASLRERGITRLNLRYTQASAQEIRDYSASNLSVNLYTVNEPWLYSLLWCSGVPSVTSDASHVLRKVPFP 262 (351)
T ss_pred HHHHHHcCCeEEccchhhcCHHHHHHHHHCCCEEEEEecCCHHHHHHHHHCCCCEEEECCHHHHHHhhhh
Confidence 1223446788888889999999999999999999999999999999999999999999999999987764
No 22
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip
Probab=100.00 E-value=9e-34 Score=225.15 Aligned_cols=178 Identities=18% Similarity=0.230 Sum_probs=140.6
Q ss_pred CceEEEEeCccchhhhCCCc-ccccccCHHHhhcc----cCCCcCCCHHHHHHHHhcC---CceEEEEeecCCCCCchhH
Q 028497 2 ESCWLFTTGRDLQRISGNIT-SKVGHLSMKEFAQK----SHDQVITTIEDALTLVSNS---VRKVILDAKVGPPSYEKGL 73 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~-~~i~~~t~~eL~~~----~~~~~iptL~evL~~~~~~---~~~l~lEiK~~~~~~~~~~ 73 (208)
||++||+||++++|+||. . +.|+++|++||++. ..++++|||+|+|+++++. +..++||+|..... ..+
T Consensus 39 Dg~~vv~HD~~l~R~t~~-~~~~v~~~t~~eL~~l~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~--~~~ 115 (234)
T cd08570 39 DGVVVISHDPNLKRCFGK-DGLIIDDSTWDELSHLRTIEEPHQPMPTLKDVLEWLVEHELPDVKLMLDIKRDNDP--EIL 115 (234)
T ss_pred CCcEEEeCCCccceeeCC-CCCEeccCCHHHHhhcccccCCCccCCcHHHHHHHHHhcCCCCeEEEEEECCCCCH--HHH
Confidence 999999999999999964 6 89999999999862 2346899999999999753 46899999975321 256
Q ss_pred HHHHHHHHHhcCC-----cceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhh-cCceEeecccc----c
Q 028497 74 AKDILSVIERTKC-----YNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIR-KAGVVGVYHPL----I 143 (208)
Q Consensus 74 ~~~v~~~l~~~~~-----~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~ 143 (208)
.+.+.+++++++. .+++++||++..++.+++..|+++++++..... ....+.... .+..+.+.+.. +
T Consensus 116 ~~~v~~~i~~~~~~~~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (234)
T cd08570 116 FKLIAEMLAVKPDLDFWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSLD---YARHFLNYSEKLVGISMHFVSLWGPF 192 (234)
T ss_pred HHHHHHHHHhcCCcccccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCHH---HHHHHhccccccceEEeeeehhhccc
Confidence 6778888888753 355789999999999999999999998864221 111222211 13334333322 6
Q ss_pred CHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCCh
Q 028497 144 DEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 144 ~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P 185 (208)
++++++.+|++|+++++||||+++++++++++|||||+||+|
T Consensus 193 ~~~~v~~~~~~gl~v~~wTvn~~~~~~~l~~~gvdgiiTD~P 234 (234)
T cd08570 193 GQAFLPELKKNGKKVFVWTVNTEEDMRYAIRLGVDGVITDDP 234 (234)
T ss_pred CHHHHHHHHHCCCEEEEEecCCHHHHHHHHHCCCCEEEeCCC
Confidence 899999999999999999999999999999999999999998
No 23
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=1.2e-33 Score=224.43 Aligned_cols=177 Identities=16% Similarity=0.266 Sum_probs=146.7
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc---cCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK---SHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDIL 78 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~---~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~ 78 (208)
||++||+||++|+|+||. .+.|.++|++||++. ..+++||||+|+|+.+++. ..++||+|..... ...+++.++
T Consensus 46 Dg~lVv~HD~~l~r~t~~-~~~v~~~t~~eL~~l~~~~~~~~iPtL~evl~~~~~~-~~l~iEiK~~~~~-~~~l~~~v~ 122 (237)
T cd08585 46 DGEVVVFHDDNLKRLTGV-EGRVEELTAAELRALRLLGTDEHIPTLDEVLELVAGR-VPLLIELKSCGGG-DGGLERRVL 122 (237)
T ss_pred CCCEEEeccchHhhhcCC-CCccccCCHHHHhcCCCCCCCCCCCCHHHHHHHhccC-ceEEEEEccCCcc-chHHHHHHH
Confidence 999999999999999964 699999999999863 2568999999999999875 5899999976432 236888899
Q ss_pred HHHHhcCCcceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchh---h-----hHh--hhhcCceEeecccccCHHHH
Q 028497 79 SVIERTKCYNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFR---T-----NLL--RIRKAGVVGVYHPLIDEKLV 148 (208)
Q Consensus 79 ~~l~~~~~~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~---~-----~~~--~~~~~~~~~~~~~~~~~~~v 148 (208)
+++++++ .+.+++||++..++++++..|++++|+++...+..... . ... ...+++++++++..++++++
T Consensus 123 ~~l~~~~-~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (237)
T cd08585 123 AALKDYK-GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSNDEADPAFWNEALLSALFSNLLTRPDFIAYHLDDLPNPFV 201 (237)
T ss_pred HHHHhcC-CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcccccccchhHHHHHhhhhhhccCCCEEEeChhhCcCHHH
Confidence 9998876 46788999999999999999999999998533211100 0 110 12477888888888999999
Q ss_pred HHHHhC-CCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 149 RTFHGR-NKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 149 ~~~~~~-g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+.+|++ |++|++||||++++++++.++|+++|+-
T Consensus 202 ~~~~~~~G~~v~vWTVnd~~~~~~l~~~G~~~i~~ 236 (237)
T cd08585 202 TLARALLGMPVIVWTVRTEEDIARLKQYADNIIFE 236 (237)
T ss_pred HHHHHhcCCcEEEEeCCCHHHHHHHHHhCCeeEeC
Confidence 999999 9999999999999999999999999873
No 24
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=7.8e-34 Score=227.48 Aligned_cols=183 Identities=23% Similarity=0.322 Sum_probs=145.9
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc-----------------cCCCcCCCHHHHHHHHhcCCceEEEEeec
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK-----------------SHDQVITTIEDALTLVSNSVRKVILDAKV 64 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~-----------------~~~~~iptL~evL~~~~~~~~~l~lEiK~ 64 (208)
||++||+||.++.|+||. .+.|+++|++||++. +.++++|||+|+|+++++ ..++||+|.
T Consensus 39 Dg~~Vv~HD~~l~r~t~~-~~~i~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~--~~~~ieiK~ 115 (249)
T cd08561 39 DGVLVVIHDETLDRTTDG-TGPVADLTLAELRRLDAGYHFTDDGGRTYPYRGQGIRIPTLEELFEAFPD--VRLNIEIKD 115 (249)
T ss_pred CCCEEEECCCccccccCC-CCchhhCCHHHHhhcCcCccccCccccccccCCCCccCCCHHHHHHhCcC--CcEEEEECC
Confidence 999999999999999975 699999999999741 124799999999999976 489999998
Q ss_pred CCCCCchhHHHHHHHHHHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhh----HhhhhcCceEeec
Q 028497 65 GPPSYEKGLAKDILSVIERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTN----LLRIRKAGVVGVY 139 (208)
Q Consensus 65 ~~~~~~~~~~~~v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~ 139 (208)
.. ..+++.++++++++++. +++++||+...++++++..|++++|++............ .....+.+.+.+.
T Consensus 116 ~~----~~~~~~~~~~l~~~~~~~~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (249)
T cd08561 116 DG----PAAAAALADLIERYGAQDRVLVASFSDRVLRRFRRLCPRVATSAGEGEVAAFVLASRLGLGSLYSPPYDALQIP 191 (249)
T ss_pred Cc----hhHHHHHHHHHHHcCCCCcEEEEECCHHHHHHHHHHCCCcceeccHHHHHHHHHHhhcccccccCCCCcEEEcC
Confidence 64 36888999999999875 457799999999999999999999887531100000000 0000222333322
Q ss_pred -----ccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHHH
Q 028497 140 -----HPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQRV 191 (208)
Q Consensus 140 -----~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~~ 191 (208)
+..+++++++.+|++|+++++||||+++++++++++|||||+||+|..+.++
T Consensus 192 ~~~~~~~~~~~~~v~~~~~~G~~v~vWTVN~~~~~~~l~~~gVdgIiTD~p~~~~~~ 248 (249)
T cd08561 192 VRYGGVPLVTPRFVRAAHAAGLEVHVWTVNDPAEMRRLLDLGVDGIITDRPDLLLEV 248 (249)
T ss_pred cccCCeecCCHHHHHHHHHCCCEEEEEecCCHHHHHHHHhcCCCEEEcCCHHHHHhh
Confidence 2467899999999999999999999999999999999999999999998875
No 25
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=100.00 E-value=4.9e-33 Score=227.04 Aligned_cols=189 Identities=11% Similarity=0.110 Sum_probs=147.9
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc-------------cC----C----CcCCCHHHHHHHHhcCCceEEE
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK-------------SH----D----QVITTIEDALTLVSNSVRKVIL 60 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~-------------~~----~----~~iptL~evL~~~~~~~~~l~l 60 (208)
||++||+||++++|+ |. .+.|.++|++||+.. +. + ++||||+|+|+.+++. +.++|
T Consensus 50 Dg~~VV~HD~~l~rt-~~-~~~v~~lt~~eL~~ld~~~~~~~~~~~~~~~~~~g~~~~~~iptL~evl~~~~~~-~~l~I 126 (286)
T cd08606 50 DLVPVIYHDFLVSET-GT-DVPIHDLTLEQFLHLSRMKYTVDFKKKGFKGNSRGHSIQAPFTTLEELLKKLPKS-VGFNI 126 (286)
T ss_pred CCEEEEeCCCeeccC-CC-CCccccCCHHHHHhhhcccccccccccCCCCcccccccccCCCcHHHHHHhCCCc-cceEE
Confidence 999999999999996 44 589999999999642 11 1 4689999999999764 68999
Q ss_pred EeecCCCCCc------------hhHHHHHHHHHHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEec--CCCc---
Q 028497 61 DAKVGPPSYE------------KGLAKDILSVIERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVD--PSTG--- 122 (208)
Q Consensus 61 EiK~~~~~~~------------~~~~~~v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~--~~~~--- 122 (208)
|||.+..... ..+++.++++++++++. +++|+||++.+++.+++..|++++++++... +...
T Consensus 127 EiK~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~ 206 (286)
T cd08606 127 ELKYPMLHEAEEEEVAPVAIELNAFVDTVLEKVFDYGAGRNIIFSSFTPDICILLSLKQPGYPVLFLTEAGKAPDMDVRA 206 (286)
T ss_pred EEecCCcchhhhcccccchhHHHHHHHHHHHHHHhcCCCCceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCCccCCchh
Confidence 9997532110 14567899999999875 4567999999999999999999999987531 1100
Q ss_pred -hh---hhHhhhhcCceEee--cccccCHHHHHHHHhCCCeEEEeeC--CCHHHHHHHHhCCCCEEEcCChHHHHHHHH
Q 028497 123 -FR---TNLLRIRKAGVVGV--YHPLIDEKLVRTFHGRNKRVFAWTV--DDEDSMRKMLHERVDAVVTSNPILFQRVMQ 193 (208)
Q Consensus 123 -~~---~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~g~~v~~wtv--~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~ 193 (208)
.. ..+++..+...+.+ .+..+++.+++.+|++|++|++||+ |+++++++++++||||||||+|+.+++.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~WTv~~n~~~~~~~l~~~GVdgIiTD~p~~~~~~~~ 285 (286)
T cd08606 207 ASLQEAIRFAKQWNLLGLVSAAEPLVMCPRLIQVVKRSGLVCVSYGVLNNDPENAKTQVKAGVDAVIVDSVLAIRRGLT 285 (286)
T ss_pred hcHHHHHHHHHHCCCeEEEechHHhhhChHHHHHHHHCCcEEEEECCccCCHHHHHHHHHcCCCEEEECCHHHHHHHhc
Confidence 00 02223345554433 4456789999999999999999999 999999999999999999999999998765
No 26
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=100.00 E-value=8.6e-33 Score=219.92 Aligned_cols=185 Identities=12% Similarity=0.111 Sum_probs=145.7
Q ss_pred CceEEEEeCccchhhhCCC---cccccccCHHHhhc--ccCCCcCCCHHHHHHHHhc-CCceEEEEeecCCCCCchhHHH
Q 028497 2 ESCWLFTTGRDLQRISGNI---TSKVGHLSMKEFAQ--KSHDQVITTIEDALTLVSN-SVRKVILDAKVGPPSYEKGLAK 75 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g---~~~i~~~t~~eL~~--~~~~~~iptL~evL~~~~~-~~~~l~lEiK~~~~~~~~~~~~ 75 (208)
||++||+||+++.|+.+.| .+.+.++|++||+. .+.++++|||+|+|+++++ ..+.++||+|.........++.
T Consensus 41 Dg~lVv~HD~~~~r~~~~g~~~~~~i~~~t~~el~~~~~~~~~~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~ 120 (237)
T cd08583 41 DGVLVARHSWDESLLKQLGLPTSKNTKPLSYEEFKSKKIYGKYTPMDFKDVIDLLKKYPDVYIVTDTKQDDDNDIKKLYE 120 (237)
T ss_pred CCCEEEEECCcCchhhhcCCcccccccCCCHHHHhhccccCCCCCCCHHHHHHHHHhCCCeEEEEEecCCCcccHHHHHH
Confidence 9999999999998864233 47899999999975 4567899999999999985 3468999999754311124566
Q ss_pred HHHHHHHhc--CCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecC-CC-chhhhHhhhhcCceEeecccccCHHHHHH
Q 028497 76 DILSVIERT--KCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDP-ST-GFRTNLLRIRKAGVVGVYHPLIDEKLVRT 150 (208)
Q Consensus 76 ~v~~~l~~~--~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 150 (208)
.+++.++++ ++. +++++||++.+++.++++.|....+++..... .. ..+..+....++..+++.+..+++.+++.
T Consensus 121 ~l~~~~~~~~~~~~~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 200 (237)
T cd08583 121 YIVKEAKEVDPDLLDRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQDSIRLDEIIAFCYENGIKAVTISKNYVNDKLIEK 200 (237)
T ss_pred HHHHHHHhhcccccceeEEEecCHHHHHHHHHhCCCcceeeEeccccccchHHHHHHHHHcCCcEEEechhhcCHHHHHH
Confidence 888888886 354 45679999999999999999866665543211 11 11123334467777888888899999999
Q ss_pred HHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChH
Q 028497 151 FHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPI 186 (208)
Q Consensus 151 ~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~ 186 (208)
+|++|++|++||||++.++++++++|||||+||+|.
T Consensus 201 ~~~~Gl~v~vwTVn~~~~~~~l~~~GVdgiiTD~~~ 236 (237)
T cd08583 201 LNKAGIYVYVYTINDLKDAQEYKKLGVYGIYTDFLT 236 (237)
T ss_pred HHHCCCEEEEEeCCCHHHHHHHHHcCCCEEEeCCCC
Confidence 999999999999999999999999999999999985
No 27
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=100.00 E-value=7.5e-33 Score=226.65 Aligned_cols=187 Identities=13% Similarity=0.143 Sum_probs=141.4
Q ss_pred CceEEEEeCccchhhhCCCcc-------------------cccccCHHHhhcc------------------cC-CCcCCC
Q 028497 2 ESCWLFTTGRDLQRISGNITS-------------------KVGHLSMKEFAQK------------------SH-DQVITT 43 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~-------------------~i~~~t~~eL~~~------------------~~-~~~ipt 43 (208)
||++||+||++|+|+||. .+ .+.++|++||+.. +. +++|||
T Consensus 41 DG~lVv~HD~~l~rtt~~-~~~~~~~~~~~~~~~~~~~~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~ipt 119 (300)
T cd08604 41 DGVPFCLDSINLINSTTV-ATSKFSNRATTVPEIGSTSGIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLT 119 (300)
T ss_pred CCCEEEeccccccCcccC-CcccccccccccccccccCceeeecCcHHHHhhCccCCcCcccccCcCCCcccCCCCCCCC
Confidence 999999999999999954 33 4789999999742 22 379999
Q ss_pred HHHHHHHHhcCC-ceEEEEeecCCCCC---chhHHHHHHHHHHhcCCc-----ceEEEeeCHHHHHHHHhhccCCeEEEE
Q 028497 44 IEDALTLVSNSV-RKVILDAKVGPPSY---EKGLAKDILSVIERTKCY-----NCLVWAKSDNLVRDIMRLSSNVTAGYI 114 (208)
Q Consensus 44 L~evL~~~~~~~-~~l~lEiK~~~~~~---~~~~~~~v~~~l~~~~~~-----~~ii~Sf~~~~l~~l~~~~p~~~~~~l 114 (208)
|+|+|+++++.+ ..++||||.....+ ...+++.++++++++++. +++|+||++..|+++++.. +++++++
T Consensus 120 L~Evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~v~i~SF~~~~L~~~~~~~-~~~~~~l 198 (300)
T cd08604 120 LSDFLDLAKNKSLSGVLINVENAAYLAEKKGLDVVDAVLDALTNAGYDNQTAQKVLIQSTDSSVLAAFKKQI-SYERVYV 198 (300)
T ss_pred HHHHHHHHHhcCCceEEEEeeccchhhhccCccHHHHHHHHHHHcCCCCCCCCeEEEEcCCHHHHHHHHhcc-CCceEEE
Confidence 999999998754 37999999754221 125888999999999873 4578999999999999988 9999999
Q ss_pred EEecCCCchhhhHhhh-hcCceEeeccccc----------CHHHHHHHHhCCCeEEEeeCCCH--------------HHH
Q 028497 115 IMVDPSTGFRTNLLRI-RKAGVVGVYHPLI----------DEKLVRTFHGRNKRVFAWTVDDE--------------DSM 169 (208)
Q Consensus 115 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~v~~~~~~g~~v~~wtv~~~--------------~~~ 169 (208)
+...+.......+... ..++.++++...+ +.++++.+|++|++|++||||++ +.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~vwTvn~~~~~~~~~~~~~~~~~~~ 278 (300)
T cd08604 199 VDETIRDASDSSIEEIKKFADAVVIDRGSVFPVSTSFLTRQTNVVEKLQSANLTVYVEVLRNEFVSLAFDFFADPTVEIN 278 (300)
T ss_pred ecCcccccChhHHHHHHHhccEEEeChhhcccccCCcccCchHHHHHHHHCCCEEEEEEecCCccccchhccCCHHHHHH
Confidence 8632211111111111 2355566554433 33899999999999999999975 345
Q ss_pred HHHHhCCCCEEEcCChHHHHH
Q 028497 170 RKMLHERVDAVVTSNPILFQR 190 (208)
Q Consensus 170 ~~~~~~gvd~i~TD~P~~~~~ 190 (208)
+++.++||||||||+|..+.+
T Consensus 279 ~~~~~~GVdgIiTD~P~~~~~ 299 (300)
T cd08604 279 SYVQGAGVDGFITEFPATAAR 299 (300)
T ss_pred HHHHHcCCCEEEecCchhhhc
Confidence 567789999999999998875
No 28
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.
Probab=100.00 E-value=3.4e-32 Score=216.65 Aligned_cols=174 Identities=16% Similarity=0.200 Sum_probs=140.2
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc--------cCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchhH
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK--------SHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKGL 73 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~--------~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~ 73 (208)
||++||+||.+++|+|+ +.+.|+++|++||+.. +.+++||||+|+|+++++. ..++||+|.. .
T Consensus 41 Dg~~vv~HD~~l~r~t~-~~~~v~~~t~~el~~l~~~~~~~~~~~~~iptL~evl~~~~~~-~~l~iEiK~~-------~ 111 (240)
T cd08566 41 DGVLVLMHDDTLDRTTN-GKGKVSDLTLAEIRKLRLKDGDGEVTDEKVPTLEEALAWAKGK-ILLNLDLKDA-------D 111 (240)
T ss_pred CCCEEEECCCCCccccC-CCCchhhCcHHHHHhCCcCCCcCCCCCCCCCCHHHHHHhhhcC-cEEEEEECch-------H
Confidence 99999999999999995 5799999999999741 3579999999999999886 6899999964 3
Q ss_pred HHHHHHHHHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhh--hHhhhhcCceEeecccc-cCHHHHH
Q 028497 74 AKDILSVIERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRT--NLLRIRKAGVVGVYHPL-IDEKLVR 149 (208)
Q Consensus 74 ~~~v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~v~ 149 (208)
.+.++++++++++. +++++||+++.++.++++.|+++++++....+.. ... ......++..+.+.+.. .....+.
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (240)
T cd08566 112 LDEVIALVKKHGALDQVIFKSYSEEQAKELRALAPEVMLMPIVRDAEDL-DEEEARAIDALNLLAFEITFDDLDLPPLFD 190 (240)
T ss_pred HHHHHHHHHHcCCcccEEEEECCHHHHHHHHHhCCCCEEEEEEccCcch-hHHHHhcccccceEEEEEeccccccHHHHH
Confidence 57789999999975 5577999999999999999999999998532211 100 11112333444555554 5677778
Q ss_pred HHHhC-CCeEEEeeCCC-------------HHHHHHHHhCCCCEEEcCCh
Q 028497 150 TFHGR-NKRVFAWTVDD-------------EDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 150 ~~~~~-g~~v~~wtv~~-------------~~~~~~~~~~gvd~i~TD~P 185 (208)
.++++ |++|++||+|+ ++.+++++++|||+|+||+|
T Consensus 191 ~~~~~~Gl~v~~wTvn~~~~~~~~~~~~~~~~~~~~l~~~Gvd~I~TD~P 240 (240)
T cd08566 191 ELLRALGIRVWVNTLGDDDTAGLDRALSDPREVWGELVDAGVDVIQTDRP 240 (240)
T ss_pred HHHHhCCCEEEEECCCcccccchhhhhhCchhHHHHHHHcCCCEEecCCC
Confidence 88777 99999999994 88999999999999999998
No 29
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv
Probab=100.00 E-value=5.7e-33 Score=227.43 Aligned_cols=189 Identities=16% Similarity=0.112 Sum_probs=141.3
Q ss_pred CceEEEEeCccchhhhCCC-----------------cc-cccccCHHHhhcc----------------c-CCCcCCCHHH
Q 028497 2 ESCWLFTTGRDLQRISGNI-----------------TS-KVGHLSMKEFAQK----------------S-HDQVITTIED 46 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g-----------------~~-~i~~~t~~eL~~~----------------~-~~~~iptL~e 46 (208)
||++||+||++|+|+|+.. .| .|.++|++||+.. + .+++||||+|
T Consensus 41 Dg~lVv~HD~~l~rtt~~~~~~~~~~~~~~~~~~~~~g~~v~d~T~aeL~~l~~~~~~~~~~~~~~~~~~~~~~IptL~e 120 (302)
T cd08571 41 DGVPICLPSINLDNSTTIASVFPKRKKTYVVEGQSTSGIFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDNAGKILTLED 120 (302)
T ss_pred CCcEEEeCCchhcCCcccccccccccceecccCcccCCeeeeeCCHHHHhhCcccccCcccccCCCcccCCCCCcCCHHH
Confidence 9999999999999999531 13 3999999999742 1 2369999999
Q ss_pred HHHHHhcCC-ceEEEEeecCCCCC---chhHHHHHHHHHHhcCCc----ceEEEeeCHHHHHHHHhhc--cCCeEEEEEE
Q 028497 47 ALTLVSNSV-RKVILDAKVGPPSY---EKGLAKDILSVIERTKCY----NCLVWAKSDNLVRDIMRLS--SNVTAGYIIM 116 (208)
Q Consensus 47 vL~~~~~~~-~~l~lEiK~~~~~~---~~~~~~~v~~~l~~~~~~----~~ii~Sf~~~~l~~l~~~~--p~~~~~~l~~ 116 (208)
+|+.++... ..++||||.....+ ...+++.++++++++++. +++|+||++.+|++++++. |.++++++..
T Consensus 121 vl~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~ 200 (302)
T cd08571 121 FLTLAKPKSLSGVWINVENAAFLAEHKGLLSVDAVLTSLSKAGYDQTAKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVD 200 (302)
T ss_pred HHHhhhccCCceEEEEccCchhhhhhccccHHHHHHHHHHHcCCCCCCCCEEEeCCCHHHHHHHHhccCCCceEEEeecC
Confidence 999998752 57999999753211 125778899999999873 5678999999999999999 9999998875
Q ss_pred ecCCCchhhhHhhh-hcCceEeecccccC-----------HHHHHHHHhCCCeEEEeeCCCHH-------------HHHH
Q 028497 117 VDPSTGFRTNLLRI-RKAGVVGVYHPLID-----------EKLVRTFHGRNKRVFAWTVDDED-------------SMRK 171 (208)
Q Consensus 117 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~v~~~~~~g~~v~~wtv~~~~-------------~~~~ 171 (208)
..........+... ..++.+++++..++ ..+++.+|++|++|++||+|++. ++.+
T Consensus 201 ~~~~~~~~~~l~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~~~~~~~~~~~~~~~~~~~ 280 (302)
T cd08571 201 DTEPDTLLSNLTEIKKFASGVLVPKSYIWPVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANEFVSLAYDYSADPTLEILS 280 (302)
T ss_pred CCcCCCChhHHHHHHHhcCccccChhHeeecCCCCcccCccHHHHHHHHcCCEEEEEEEecCcccccccccCCHHHHHHH
Confidence 32111101112111 22455554444333 48999999999999999998854 4777
Q ss_pred HHhC--CCCEEEcCChHHHHH
Q 028497 172 MLHE--RVDAVVTSNPILFQR 190 (208)
Q Consensus 172 ~~~~--gvd~i~TD~P~~~~~ 190 (208)
++.. ||||||||+|+.+.+
T Consensus 281 ~~~~~~gVDGiiTD~P~~~~~ 301 (302)
T cd08571 281 FVGNGNSVDGVITDFPATAAR 301 (302)
T ss_pred HHHhcCCCCEEEecCchhhhc
Confidence 7766 899999999998875
No 30
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP
Probab=100.00 E-value=1.1e-32 Score=227.14 Aligned_cols=185 Identities=18% Similarity=0.148 Sum_probs=139.7
Q ss_pred CceEEEEeCccchhhhCC-----------CcccccccCHHHhhcc-----c-------------------CCCcCCCHHH
Q 028497 2 ESCWLFTTGRDLQRISGN-----------ITSKVGHLSMKEFAQK-----S-------------------HDQVITTIED 46 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~-----------g~~~i~~~t~~eL~~~-----~-------------------~~~~iptL~e 46 (208)
||++||+||++|+|+|+. |.+.|.++|++||+.. + .+++||||+|
T Consensus 41 Dg~lVv~HD~~l~rtt~~~~~~~~~~~~~g~~~v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~~IptL~e 120 (318)
T cd08600 41 DDKLVVIHDHYLDNVTNVAEKFPDRKRKDGRYYVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDFKIHTLEE 120 (318)
T ss_pred CCcEEEeCCchhhccCCcccccccccccCCceeEeeCcHHHHhhCCCCCCcccccccccccccccCcccCCCCccCCHHH
Confidence 999999999999999952 2346999999999641 1 3568999999
Q ss_pred HHHHHhcC------CceEEEEeecCCCCC--chhHHHHHHHHHHhcCCc----ceEEEeeCHHHHHHHHh-hcc----CC
Q 028497 47 ALTLVSNS------VRKVILDAKVGPPSY--EKGLAKDILSVIERTKCY----NCLVWAKSDNLVRDIMR-LSS----NV 109 (208)
Q Consensus 47 vL~~~~~~------~~~l~lEiK~~~~~~--~~~~~~~v~~~l~~~~~~----~~ii~Sf~~~~l~~l~~-~~p----~~ 109 (208)
+|+++++. ...++||||...... ...+++.++++++++++. +++|+||+++.|+++++ +.| ++
T Consensus 121 vl~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SF~~~~L~~~~~~~~p~~~~~~ 200 (318)
T cd08600 121 EIELIQGLNKSTGKNVGIYPEIKAPWFHHQEGKDIAAATLEVLKKYGYTSKNDKVYLQTFDPNELKRIKNELLPKMGMDL 200 (318)
T ss_pred HHHHHHHhhhhcCCcceEEEeecCchhhhhccccHHHHHHHHHHHcCCCCCCCeEEEEeCCHHHHHHHHHhhCccccCCc
Confidence 99998752 468999999753211 125889999999999973 35789999999999997 899 99
Q ss_pred eEEEEEEecCCC--------------chh----hhHhh-hhcCceEeeccccc-----------CHHHHHHHHhCCCeEE
Q 028497 110 TAGYIIMVDPST--------------GFR----TNLLR-IRKAGVVGVYHPLI-----------DEKLVRTFHGRNKRVF 159 (208)
Q Consensus 110 ~~~~l~~~~~~~--------------~~~----~~~~~-~~~~~~~~~~~~~~-----------~~~~v~~~~~~g~~v~ 159 (208)
++++++....+. +.+ ..+.. ...++.+++++..+ +.++++.+|++|+.|+
T Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~ 280 (318)
T cd08600 201 KLVQLIAYTDWGETQEKDPGGWVNYDYDWMFTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVH 280 (318)
T ss_pred ceEEEeccCCCCcccccccCCccccchhhhcCHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEE
Confidence 999998521100 000 01212 13366677666544 4599999999999999
Q ss_pred EeeCCCHHH------HHH-----HHhCCCCEEEcCChH
Q 028497 160 AWTVDDEDS------MRK-----MLHERVDAVVTSNPI 186 (208)
Q Consensus 160 ~wtv~~~~~------~~~-----~~~~gvd~i~TD~P~ 186 (208)
+||||++.. +.. +.++||||||||+|+
T Consensus 281 ~wTvn~~~~~~~~~~~~~~~~~~l~~~GVDGiiTD~P~ 318 (318)
T cd08600 281 PYTVRKDALPEYAKDADQLLDALLNKAGVDGVFTDFPD 318 (318)
T ss_pred EEeccCCccccccCCHHHHHHHHHHhcCCcEEEcCCCC
Confidence 999999862 333 468999999999995
No 31
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=100.00 E-value=3.2e-32 Score=222.42 Aligned_cols=182 Identities=10% Similarity=0.076 Sum_probs=144.8
Q ss_pred CceEEEEeCccchhhhC----------CCcccccccCHHHhhcc---------------------------cCCCcCCCH
Q 028497 2 ESCWLFTTGRDLQRISG----------NITSKVGHLSMKEFAQK---------------------------SHDQVITTI 44 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg----------~g~~~i~~~t~~eL~~~---------------------------~~~~~iptL 44 (208)
||++||+||.+++|+|+ . .+.|+++|++||+.. +.+++||||
T Consensus 48 DG~lVv~HD~~l~r~~~~~~~~~~~~g~-~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL 126 (293)
T cd08572 48 DGVPVIYHDFTISVSEKSKTGSDEGELI-EVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDEHDPFPTL 126 (293)
T ss_pred CCeEEEEcCCcceeecccccccccCcce-eeehhhCcHHHHHhccccccccccccccccccccCCccccchhhccCCCCH
Confidence 99999999999999983 3 378999999999641 124789999
Q ss_pred HHHHHHHhcCCceEEEEeecCCCCCc-----------hhHHHHHHHHHHhcCCcc-eEEEeeCHHHHHHHHhhccCCeEE
Q 028497 45 EDALTLVSNSVRKVILDAKVGPPSYE-----------KGLAKDILSVIERTKCYN-CLVWAKSDNLVRDIMRLSSNVTAG 112 (208)
Q Consensus 45 ~evL~~~~~~~~~l~lEiK~~~~~~~-----------~~~~~~v~~~l~~~~~~~-~ii~Sf~~~~l~~l~~~~p~~~~~ 112 (208)
+|+|+.+++. ++++||||.+..... ..+++.++++++++++.+ ++++||++++++.+++..|+++++
T Consensus 127 ~evL~~~~~~-~~l~IEiK~~~~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~~~vv~~SF~~~~l~~l~~~~p~~~~~ 205 (293)
T cd08572 127 QEVLEQVPKD-LGFNIEIKYPQLLEDGEGELTPYFERNAFVDTILAVVFEHAGGRRIIFSSFDPDICIMLRLKQNKYPVL 205 (293)
T ss_pred HHHHHhCCCc-cceEEEEecCCccccccccccchHHHHHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHhhCccCCEE
Confidence 9999999864 689999997542110 257788999999998754 577999999999999999999999
Q ss_pred EEEEecCC----Cch----h---hhHhhhhcCceEeeccc--ccCHHHHHHHHhCCCeEEEeeC--CCHHHHHHHHhCCC
Q 028497 113 YIIMVDPS----TGF----R---TNLLRIRKAGVVGVYHP--LIDEKLVRTFHGRNKRVFAWTV--DDEDSMRKMLHERV 177 (208)
Q Consensus 113 ~l~~~~~~----~~~----~---~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~g~~v~~wtv--~~~~~~~~~~~~gv 177 (208)
+++..... ... . ..+.+..++..+.+.+. ..++++++.+|++|++|++||+ |++++++++.++||
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~~~~~~l~~~GV 285 (293)
T cd08572 206 FLTNGGTNEVEHMDPRRRSLQAAVNFALAEGLLGVVLHAEDLLKNPSLISLVKALGLVLFTYGDDNNDPENVKKQKELGV 285 (293)
T ss_pred EEecCCCCcccccchhhhhHHHHHHHHHHCCCeEEEechHHhhcCcHHHHHHHHcCcEEEEECCCCCCHHHHHHHHHcCC
Confidence 99853211 000 0 12234456666555433 4589999999999999999999 99999999999999
Q ss_pred CEEEcCCh
Q 028497 178 DAVVTSNP 185 (208)
Q Consensus 178 d~i~TD~P 185 (208)
||||||+|
T Consensus 286 dgIiTD~~ 293 (293)
T cd08572 286 DGVIYDRV 293 (293)
T ss_pred CEEEecCC
Confidence 99999986
No 32
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=100.00 E-value=4.8e-32 Score=225.79 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=146.3
Q ss_pred CceEEEEeCccchhhhCC-----------CcccccccCHHHhhcc-----c-------------------CCCcCCCHHH
Q 028497 2 ESCWLFTTGRDLQRISGN-----------ITSKVGHLSMKEFAQK-----S-------------------HDQVITTIED 46 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~-----------g~~~i~~~t~~eL~~~-----~-------------------~~~~iptL~e 46 (208)
||++||+||++|+|+|+. |.+.|.++||+||+.. + .+++||||+|
T Consensus 67 Dg~lVv~HD~~l~rtT~~~~~~~~~~~~~g~~~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IPTL~E 146 (355)
T PRK11143 67 DDQLVVLHDHYLDRVTDVAERFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVHTFEE 146 (355)
T ss_pred CCcEEEeCCchhcccCCcccccccccccCCceeEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccCCHHH
Confidence 999999999999999952 3457999999999741 1 2688999999
Q ss_pred HHHHHhcC------CceEEEEeecCCCCC--chhHHHHHHHHHHhcCC----cceEEEeeCHHHHHHHHh-hccC----C
Q 028497 47 ALTLVSNS------VRKVILDAKVGPPSY--EKGLAKDILSVIERTKC----YNCLVWAKSDNLVRDIMR-LSSN----V 109 (208)
Q Consensus 47 vL~~~~~~------~~~l~lEiK~~~~~~--~~~~~~~v~~~l~~~~~----~~~ii~Sf~~~~l~~l~~-~~p~----~ 109 (208)
+|++++.. ...++||||...... ...+++.++++++++++ .+++|+||++..++++++ +.|+ +
T Consensus 147 vl~~~~~~~~~~~~~~~l~IEiK~~~~~~~~~~~~~~~v~~~l~~~g~~~~~~~v~i~SFd~~~L~~~~~~~~p~~~~~~ 226 (355)
T PRK11143 147 EIEFIQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKVLEVLKKYGYTGKDDKVYLQCFDANELKRIKNELEPKMGMDL 226 (355)
T ss_pred HHHHHHHhhhhcCCCceeeEeccCcccccccchhHHHHHHHHHHHhCCCCCCCCEEEeCCCHHHHHHHHhhcCccccCCc
Confidence 99998752 458999999853221 13588999999999987 256789999999999998 7787 5
Q ss_pred eEEEEEEec--C-C------------Cchh----hhHhhh-hcCceEeeccc-ccCH----------HHHHHHHhCCCeE
Q 028497 110 TAGYIIMVD--P-S------------TGFR----TNLLRI-RKAGVVGVYHP-LIDE----------KLVRTFHGRNKRV 158 (208)
Q Consensus 110 ~~~~l~~~~--~-~------------~~~~----~~~~~~-~~~~~~~~~~~-~~~~----------~~v~~~~~~g~~v 158 (208)
++++++... + . .+.+ ..+.+. ..++.+++++. .+++ ++++.+|++|++|
T Consensus 227 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~~~~~~v~~ah~~Gl~V 306 (355)
T PRK11143 227 KLVQLIAYTDWNETQEKQPDGKWVNYNYDWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVV 306 (355)
T ss_pred ceEEEeccCCCcccccccccCcccccchhhhcChhhHHHHHhhceeecCChhheeeccccCCccChHHHHHHHHHcCCEE
Confidence 888886421 1 0 0000 112221 34566666654 3343 8999999999999
Q ss_pred EEeeCCC---------HHHHHHHH--hCCCCEEEcCChHHHHHHHHH
Q 028497 159 FAWTVDD---------EDSMRKML--HERVDAVVTSNPILFQRVMQD 194 (208)
Q Consensus 159 ~~wtv~~---------~~~~~~~~--~~gvd~i~TD~P~~~~~~~~~ 194 (208)
++||||+ +.++.+++ ++||||||||+|+.+.+++.+
T Consensus 307 ~~WTVn~~~~~~~~~d~~~~~~~~~~~~GVDGIiTD~P~~~~~~l~~ 353 (355)
T PRK11143 307 HPYTVRADQLPEYATDVNQLYDILYNQAGVDGVFTDFPDKAVKFLNK 353 (355)
T ss_pred EEEEeccccchhhhcChHHHHHHHHHccCCCEEEcCChHHHHHHHhc
Confidence 9999986 57887775 999999999999999988864
No 33
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=100.00 E-value=7.3e-32 Score=220.56 Aligned_cols=183 Identities=12% Similarity=0.085 Sum_probs=141.2
Q ss_pred CceEEEEeCccchhhhCCC---------cccccccCHHHhhcc------------c----------CCCcCCCHHHHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNI---------TSKVGHLSMKEFAQK------------S----------HDQVITTIEDALTL 50 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g---------~~~i~~~t~~eL~~~------------~----------~~~~iptL~evL~~ 50 (208)
||++||+||++++|+++.. .+.|.++||+||++. + .+++||||+|+|+.
T Consensus 47 Dg~~VV~HD~~l~r~~~~~~~~~~~~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~ 126 (290)
T cd08607 47 DLVPVVYHDFTLRVSLKSKGDSDRDDLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLES 126 (290)
T ss_pred CCeEEEEcCCeeEeeccCccccCccceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHh
Confidence 9999999999999998431 138999999999741 1 15689999999999
Q ss_pred HhcCCceEEEEeecCCCCCc-------------hhHHHHHHHHHHhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEE
Q 028497 51 VSNSVRKVILDAKVGPPSYE-------------KGLAKDILSVIERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIM 116 (208)
Q Consensus 51 ~~~~~~~l~lEiK~~~~~~~-------------~~~~~~v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~ 116 (208)
+++. +.++||||.+...+. ..+++.+++.+.+++.. +++|+||++.+++.+++..|+++++++..
T Consensus 127 ~~~~-~~lnIEiK~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~v~isSF~~~~l~~~~~~~p~~~~~~l~~ 205 (290)
T cd08607 127 VPED-VGFNIEIKWPQQQKDGSWESELFTYFDRNLFVDIILKIVLEHAGKRRIIFSSFDADICTMLRFKQNKYPVLFLTQ 205 (290)
T ss_pred CCCc-cceEEEEecCccccccccccccccccchhHHHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHhCcCCCEEEEec
Confidence 9874 689999997532111 13677888888888764 56789999999999999999999999875
Q ss_pred ecCC---Cch-h--------hhHhhhhcCceEee--cccccCHHHHHHHHhCCCeEEEeeC--CCHHHHHHHHhCCCCEE
Q 028497 117 VDPS---TGF-R--------TNLLRIRKAGVVGV--YHPLIDEKLVRTFHGRNKRVFAWTV--DDEDSMRKMLHERVDAV 180 (208)
Q Consensus 117 ~~~~---~~~-~--------~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~g~~v~~wtv--~~~~~~~~~~~~gvd~i 180 (208)
.... ... . ..+.+..+...+.+ .+...++++++.+|++|++|++||+ |++++++++.++|||||
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~~~~~~l~~~GVdgI 285 (290)
T cd08607 206 GKTQRYPEFMDLRTRTFEIAVNFAQAEELLGVNLHSEDLLKDPSQIELAKSLGLVVFCWGDDLNDPENRKKLKELGVDGL 285 (290)
T ss_pred CCCCccccccchHHHhHHHHHHHHHHcCCceeEechhhhhcChHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 3211 000 0 01222234443433 3445789999999999999999999 99999999999999999
Q ss_pred EcCCh
Q 028497 181 VTSNP 185 (208)
Q Consensus 181 ~TD~P 185 (208)
|||++
T Consensus 286 iTD~~ 290 (290)
T cd08607 286 IYDRI 290 (290)
T ss_pred EecCC
Confidence 99985
No 34
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=99.98 E-value=3.3e-31 Score=217.70 Aligned_cols=182 Identities=14% Similarity=0.157 Sum_probs=140.3
Q ss_pred CceEEEEeCccchhhhCCCcc---------------------cccccCHHHhhcc------------cCC-CcCCCHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITS---------------------KVGHLSMKEFAQK------------SHD-QVITTIEDA 47 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~---------------------~i~~~t~~eL~~~------------~~~-~~iptL~ev 47 (208)
||++||+||++|+|+|+. .+ .|.++|++||+.. +.+ ++||||+|+
T Consensus 41 Dg~lVv~HD~~l~rtt~~-~~~~~~~~r~~~~~i~~~~~~~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~iptL~Ev 119 (309)
T cd08602 41 DGVLICRHEPELSGTTDV-ADHPEFADRKTTKTVDGVNVTGWFTEDFTLAELKTLRARQRLPYRDQSYDGQFPIPTFEEI 119 (309)
T ss_pred CCcEEEeCCCccccccCc-cccccccccccccccCCcccCCeeeccCCHHHHhhCccCCcCcccCcccCCCcCcCCHHHH
Confidence 999999999999999953 22 3999999999741 223 589999999
Q ss_pred HHHHhcC------CceEEEEeecCCCCC---chhHHHHHHHHHHhcCCc----ceEEEeeCHHHHHHHHhhccCCeEEEE
Q 028497 48 LTLVSNS------VRKVILDAKVGPPSY---EKGLAKDILSVIERTKCY----NCLVWAKSDNLVRDIMRLSSNVTAGYI 114 (208)
Q Consensus 48 L~~~~~~------~~~l~lEiK~~~~~~---~~~~~~~v~~~l~~~~~~----~~ii~Sf~~~~l~~l~~~~p~~~~~~l 114 (208)
|+++++. .++++||||...... ...+++.++++++++++. +++|+||++..+++++++. +++++++
T Consensus 120 l~~~~~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~v~i~SFd~~~L~~~~~~~-~~~~~~L 198 (309)
T cd08602 120 IALAKAASAATGRTVGIYPEIKHPTYFNAPLGLPMEDKLLETLKKYGYTGKKAPVFIQSFEVTNLKYLRNKT-DLPLVQL 198 (309)
T ss_pred HHHHHhhhhcccccceeEEeecCchhcccccCCCHHHHHHHHHHHcCCCCCCCCEEEECCCHHHHHHHHhhh-CCCeEEE
Confidence 9999764 468999999654221 126888999999999873 5678999999999999988 9999999
Q ss_pred EEecCC---C--------ch---hhhHhhh--hcCceEeeccccc-----------CHHHHHHHHhCCCeEEEeeCCCH-
Q 028497 115 IMVDPS---T--------GF---RTNLLRI--RKAGVVGVYHPLI-----------DEKLVRTFHGRNKRVFAWTVDDE- 166 (208)
Q Consensus 115 ~~~~~~---~--------~~---~~~~~~~--~~~~~~~~~~~~~-----------~~~~v~~~~~~g~~v~~wtv~~~- 166 (208)
+..... . +. +....+. ..++.+++++.++ ++++++.+|++|++|++||+|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~~~ 278 (309)
T cd08602 199 IDDATIPPQDTPEGDSRTYADLTTDAGLKEIATYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRNEN 278 (309)
T ss_pred ecCCCCCcccccccCccchhhhcCHHHHHHHHhhceEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecCCC
Confidence 853211 0 00 0011111 2455666655544 45899999999999999999973
Q ss_pred ------------HHHHHHHhCCCCEEEcCCh
Q 028497 167 ------------DSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 167 ------------~~~~~~~~~gvd~i~TD~P 185 (208)
+++++++++||||||||+|
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~~GVdgiiTD~P 309 (309)
T cd08602 279 TFLPPDFFGDPYAEYRAFLDAGVDGLFTDFP 309 (309)
T ss_pred cccCcccCCCHHHHHHHHHHhCCCEEeCCCC
Confidence 7999999999999999998
No 35
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=99.97 E-value=7.3e-30 Score=212.14 Aligned_cols=188 Identities=7% Similarity=0.126 Sum_probs=139.6
Q ss_pred CceEEEEeCc-cchhhhCCC------------------------cccccccCHHHhhccc--------------------
Q 028497 2 ESCWLFTTGR-DLQRISGNI------------------------TSKVGHLSMKEFAQKS-------------------- 36 (208)
Q Consensus 2 Dg~~Vv~HD~-~l~r~tg~g------------------------~~~i~~~t~~eL~~~~-------------------- 36 (208)
||++||+||. +|+|||+.. .+.|.++||+||+...
T Consensus 57 Dg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~g~~~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~ 136 (356)
T cd08560 57 DRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTPANATKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGT 136 (356)
T ss_pred CCcEEEECCCccccCccCCccccchhhhccccccccccccccccCcchhhCcHHHHhcCCCccccccccccccccccccc
Confidence 9999999997 899999542 1279999999996421
Q ss_pred ---------CCCcCCCHHHHHHHHhcCCceEEEEeecCCCCC-------chhHHHHHHHHHHhcCCc--ceEEEeeCHHH
Q 028497 37 ---------HDQVITTIEDALTLVSNSVRKVILDAKVGPPSY-------EKGLAKDILSVIERTKCY--NCLVWAKSDNL 98 (208)
Q Consensus 37 ---------~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~-------~~~~~~~v~~~l~~~~~~--~~ii~Sf~~~~ 98 (208)
.+++||||+|+|+++++..+++++|||.+.... ...+++.++++++++++. +++|+||++..
T Consensus 137 p~~~~~~~~~~~~IPTL~Evl~lv~~~~v~l~iEiK~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~~~v~iqSFd~~~ 216 (356)
T cd08560 137 PDWRTDLYATCGTLMTHKESIALFKSLGVKMTPELKSPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPPSRVWPQSFNLDD 216 (356)
T ss_pred cccccccccCCCCCCCHHHHHHHHHhcCceEEEEeCCCcccccccccccHHHHHHHHHHHHHHcCCCCCCEEEECCCHHH
Confidence 246899999999999876679999999765311 125788999999999874 56789999999
Q ss_pred HHHHHhhccCCeEEEEEEec---CC--Cchhhh-Hh--hhhcCceEeeccc----------ccCHHHHHHHHhCCCeEEE
Q 028497 99 VRDIMRLSSNVTAGYIIMVD---PS--TGFRTN-LL--RIRKAGVVGVYHP----------LIDEKLVRTFHGRNKRVFA 160 (208)
Q Consensus 99 l~~l~~~~p~~~~~~l~~~~---~~--~~~~~~-~~--~~~~~~~~~~~~~----------~~~~~~v~~~~~~g~~v~~ 160 (208)
|++++++.|++++++++... +. ...+.. +. +..+++++++++. ..+..+++.+|++|++|++
T Consensus 217 L~~~~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 217 IFYWIKNEPDFGRQAVYLDDRDDTADFPATWSPSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIIT 296 (356)
T ss_pred HHHHHHhCCCCCeeEEEEccCCccccccccHHHHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEE
Confidence 99999999988775555311 10 011111 11 2356777776643 3367899999999999999
Q ss_pred eeCCCH-------------------------HHHHHHH-hCCCCEEEcCChHHHH
Q 028497 161 WTVDDE-------------------------DSMRKML-HERVDAVVTSNPILFQ 189 (208)
Q Consensus 161 wtv~~~-------------------------~~~~~~~-~~gvd~i~TD~P~~~~ 189 (208)
||++++ ..+..++ ++|||||+||+|....
T Consensus 297 WTvr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvDGvftD~p~~~~ 351 (356)
T cd08560 297 WTLERSGPLASGGGWYYQTIEDVINNDGDMYNVLDVLARDVGILGIFSDWPATVT 351 (356)
T ss_pred EEeecCcccccCcccccccccccccccccHHHHHHHHHHhcCCCEEEccCCCcee
Confidence 999521 2344444 6999999999998654
No 36
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=99.96 E-value=6e-28 Score=195.65 Aligned_cols=180 Identities=8% Similarity=0.064 Sum_probs=134.2
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc-----c----------C---CCcCCCHHHHHHHHhcCCceEEEEee
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK-----S----------H---DQVITTIEDALTLVSNSVRKVILDAK 63 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~-----~----------~---~~~iptL~evL~~~~~~~~~l~lEiK 63 (208)
||++||+||++|+|+|+ +.+.|+++|++||+.. + . ..+||||+|+|+++++ ..++||||
T Consensus 86 Dg~lVV~HD~tL~R~T~-g~g~V~dlTlaEL~~Ld~g~~~~~~~g~~~p~~~~~~~~IPTL~EvL~~~~~--~~l~IEiK 162 (309)
T cd08613 86 DGEFAVFHDWTLDCRTD-GSGVTRDHTMAELKTLDIGYGYTADGGKTFPFRGKGVGMMPTLDEVFAAFPD--RRFLINFK 162 (309)
T ss_pred CCeEEEEecCccccccC-CCCchhhCCHHHHhhCCcCcccccccccccccccCCCCCCcCHHHHHHhcCC--CcEEEEeC
Confidence 99999999999999995 5799999999999741 1 0 1369999999999976 47999999
Q ss_pred cCCCCCchhHHHHHHHHHHhcCCcceEEEeeC--HHHHHHHHhhccCCeEEEEEEecC--CCch---hhhH-hhhhcCce
Q 028497 64 VGPPSYEKGLAKDILSVIERTKCYNCLVWAKS--DNLVRDIMRLSSNVTAGYIIMVDP--STGF---RTNL-LRIRKAGV 135 (208)
Q Consensus 64 ~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf~--~~~l~~l~~~~p~~~~~~l~~~~~--~~~~---~~~~-~~~~~~~~ 135 (208)
.... ...+.+.++++++++.++.++||+ ++.+++++++.|++++.-...... ..+. |.-+ -..+.-+.
T Consensus 163 ~~~~----~~~~~v~~~i~~~~~~r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~~~~~~~~~~~~~~~~g~~p~~~~~~~ 238 (309)
T cd08613 163 SDDA----AEGELLAEKLATLPRKRLQVLTVYGGDKPIAALRELTPDLRTLSKASMKDCLIEYLALGWTGYVPDSCRNTT 238 (309)
T ss_pred CCCc----cHHHHHHHHHHhcCccceEEEEEECCHHHHHHHHHHCCCCceecccchHHHHHHHHhhcccccCCccccCCe
Confidence 8642 356788999999988766667775 788999999999998842111000 0000 0000 01111133
Q ss_pred Eeec--c---cc-cCHHHHHHHHhCCCeEEEe----------eCCCHHHHHHHHhCCCCEEEcCChHHH
Q 028497 136 VGVY--H---PL-IDEKLVRTFHGRNKRVFAW----------TVDDEDSMRKMLHERVDAVVTSNPILF 188 (208)
Q Consensus 136 ~~~~--~---~~-~~~~~v~~~~~~g~~v~~w----------tv~~~~~~~~~~~~gvd~i~TD~P~~~ 188 (208)
+.+. + .. .++.+++++|..|.+|++| |+|++++++++.+.|++||+||+|+.+
T Consensus 239 ~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~gi~T~r~~~l 307 (309)
T cd08613 239 LLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGEFSEGFDTPEDLKRLPEGFTGYIWTNKIEAL 307 (309)
T ss_pred EecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCcccCCCCCHHHHHHHHhhCCCeEEeCCHhhc
Confidence 3321 1 12 3789999999999999999 899999999999999999999999875
No 37
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme.; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....
Probab=99.95 E-value=1.7e-27 Score=190.25 Aligned_cols=185 Identities=18% Similarity=0.267 Sum_probs=127.0
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhccc----------CCC------cCCCHHHHHHHHhcCCceEEEEeecC
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQKS----------HDQ------VITTIEDALTLVSNSVRKVILDAKVG 65 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~~----------~~~------~iptL~evL~~~~~~~~~l~lEiK~~ 65 (208)
||++||+||.+++|+||. .+.|+++||+||+... .++ +||||+|+|+++......+.+++|..
T Consensus 36 Dg~~Vv~HD~~l~r~~~~-~~~i~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~i~tl~e~l~~~~~~~~~~~i~~~~~ 114 (256)
T PF03009_consen 36 DGVPVVFHDDTLDRTTGG-DGPISDLTYAELKKLRTLGSKNSPPFRGQRIPGKQKIPTLEEVLELCAKVKLNLEIKIKSK 114 (256)
T ss_dssp TS-EEE-SSSBSTTTSST-ESBGGGS-HHHHTTSBESSTTTTCGGTTTTSCTCB--EBHHHHHHHHHTTTSEEEEEEEEC
T ss_pred CceeEeccCCeeeeecCC-CceeccCCHHHHhhCcccccCCcccccccceecccccCcHHHHHHhhhhccceeEEEEeec
Confidence 999999999999999965 6899999999997532 233 47999999999655556888888876
Q ss_pred CCCCch---hHHHHHHHHHHhcC------C-cceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchh---hhHhhhhc
Q 028497 66 PPSYEK---GLAKDILSVIERTK------C-YNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFR---TNLLRIRK 132 (208)
Q Consensus 66 ~~~~~~---~~~~~v~~~l~~~~------~-~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~---~~~~~~~~ 132 (208)
...... .+.+.+.+.+.... . .+.+++||++..++.+++..|.++++++.......... ....+..+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 194 (256)
T PF03009_consen 115 DEIKDPEFLKIVKDIVESVSDILKNSKQALSRRIIISSFDPEALKQLKQRAPRYPVGFLFEQDDEAPADISLFELYKFVK 194 (256)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHCHHHHHHHHCTSEEEEESCHHHHHHHHHHCTTSEEEEEESSCHHHHHH-CCHHHHHHHT
T ss_pred ccccchhhccccccccccccccccccccccccccccccCcHHHHHHHHhcCCCceEEEEeccCccccccchhhHHHHhhc
Confidence 432111 23444445554443 2 34567999999999999999999999888532211111 01223333
Q ss_pred CceEeeccc---c--cCHHHHHHHHhCCCeEEEeeCCCH--HHHHHHHhCCCCEEEcCChHH
Q 028497 133 AGVVGVYHP---L--IDEKLVRTFHGRNKRVFAWTVDDE--DSMRKMLHERVDAVVTSNPIL 187 (208)
Q Consensus 133 ~~~~~~~~~---~--~~~~~v~~~~~~g~~v~~wtv~~~--~~~~~~~~~gvd~i~TD~P~~ 187 (208)
...+..... . .++++++.+|++|+.|++||+|++ ++++++.++||||||||+|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtvn~~~~~~~~~l~~~gvdgIiTD~P~~ 256 (256)
T PF03009_consen 195 CPGFLASVWNYADRLGNPRLVQEAHKAGLKVYVWTVNDPDVEDMKRLLDLGVDGIITDFPDT 256 (256)
T ss_dssp TTEEEEEHGGGGHHCEBHHHHHHHHHTT-EEEEBSB-SHSHHHHHHHHHHT-SEEEES-HHH
T ss_pred cccccccccccccccccHHHHHHHHHCCCEEEEEecCCcHHHHHHHHHhCCCCEEEEcCCCC
Confidence 333332221 1 256799999999999999999999 999999999999999999973
No 38
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=99.95 E-value=9.8e-27 Score=178.55 Aligned_cols=150 Identities=23% Similarity=0.358 Sum_probs=128.4
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcccCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQKSHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVI 81 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l 81 (208)
||++||+|| +|||+|+|+.+++ +..++||+|.... ...+++.+++++
T Consensus 39 Dg~~vv~Hd------------------------------i~tL~e~l~~~~~-~~~i~leiK~~~~--~~~~~~~l~~~i 85 (189)
T cd08556 39 DGVLVVIHD------------------------------IPTLEEVLELVKG-GVGLNIELKEPTR--YPGLEAKVAELL 85 (189)
T ss_pred CCCEEEEcC------------------------------CCCHHHHHHhccc-CcEEEEEECCCCC--chhHHHHHHHHH
Confidence 899999999 9999999999998 5789999999643 126888999999
Q ss_pred HhcCCc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEE
Q 028497 82 ERTKCY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFA 160 (208)
Q Consensus 82 ~~~~~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~ 160 (208)
++++.. +++++||++..++++++..|+++++++..............+..+++++++++..+++.+++.+|++|+++++
T Consensus 86 ~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~~~g~~v~~ 165 (189)
T cd08556 86 REYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYKLLTPELVRAAHAAGLKVYV 165 (189)
T ss_pred HHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccChhhCCHHHHHHHHHcCCEEEE
Confidence 999864 5577999999999999999999999998753322111113355788888888888999999999999999999
Q ss_pred eeCCCHHHHHHHHhCCCCEEEcCC
Q 028497 161 WTVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 161 wtv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
||+|+.+++++++++|||||+||+
T Consensus 166 wtvn~~~~~~~~~~~GVdgI~TD~ 189 (189)
T cd08556 166 WTVNDPEDARRLLALGVDGIITDD 189 (189)
T ss_pred EcCCCHHHHHHHHHCCCCEEecCC
Confidence 999999999999999999999996
No 39
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=99.94 E-value=9.1e-26 Score=181.54 Aligned_cols=190 Identities=19% Similarity=0.291 Sum_probs=143.4
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc--------cCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchh-
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK--------SHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKG- 72 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~--------~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~- 72 (208)
||++||+||++++|||+ +.+.+.++|++|+... ..++.+|||+|++..+ +...++++|+|.........
T Consensus 46 Dg~lVv~HD~~~drt~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~l~~~l~~~-~~~~~l~ieiK~~~~~~~~~~ 123 (257)
T COG0584 46 DGVLVVIHDETLDRTTN-GLGTVRDLTLAELKRLDAGSFRIPTFGEEIPTLEELLEAT-GRKIGLYIEIKSPGFHPQEGK 123 (257)
T ss_pred CCcEEEecccchhhhcc-CccccccCChhhhcCcccCcccCCCCCCccCCHHHHHHHh-cccCCeEEEecCCCcccchhh
Confidence 99999999999999994 5688999999999531 1279999999999999 55579999999976432212
Q ss_pred HHHHHHHHHHhcCC----cceEEEeeCHHHHHHHHhhccCCeEEEEEEecC---CCchhhhHhh-hhcCceEeeccccc-
Q 028497 73 LAKDILSVIERTKC----YNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDP---STGFRTNLLR-IRKAGVVGVYHPLI- 143 (208)
Q Consensus 73 ~~~~v~~~l~~~~~----~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~- 143 (208)
....++..+.+... .+.+++||+.+.+..+++..|.++++++..... +......+.. ....+.+++.+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 203 (257)
T COG0584 124 ILAALLALLKRYGGTAADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQYDWMELPRALKEVALYADGVGPDWAMLA 203 (257)
T ss_pred hHHHHHHHHHHhcccCCCCceEEEecCHHHHHHHHHhCcCCceEEEEcccchhhhhhccchhhHHHhhhcccCcccceec
Confidence 35566666655532 356789999999999999999999999987421 0101111111 12233333333333
Q ss_pred --CHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHHHHH
Q 028497 144 --DEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQRVMQ 193 (208)
Q Consensus 144 --~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~ 193 (208)
.+.++..++..|++|.+||+|+++.+..+.+.|||+|+||+|..+.+.+.
T Consensus 204 ~~~~~~v~~~~~~gl~v~~~tv~~~~~~~~~~~~gvd~i~td~p~~~~~~~~ 255 (257)
T COG0584 204 ELLTELVDDAHAAGLKVHVWTVNEEDDIRLLLEAGVDGLITDFPDLAVAFLN 255 (257)
T ss_pred ccccHHHHHHHhCCCeEEEEecCcHHHHHHHHHcCCCEEEcCCHHHHHHhhc
Confidence 25789999999999999999999999999999999999999999987764
No 40
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=99.93 E-value=2.8e-25 Score=179.78 Aligned_cols=185 Identities=16% Similarity=0.101 Sum_probs=127.9
Q ss_pred CceEEEEeCccchhhhCCC-----------------cc-cccccCHHHhhc------------ccCCC-cCCCHHHHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNI-----------------TS-KVGHLSMKEFAQ------------KSHDQ-VITTIEDALTL 50 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g-----------------~~-~i~~~t~~eL~~------------~~~~~-~iptL~evL~~ 50 (208)
||++||+||.+|+|+|+.. .| .+.++||+||+. .+.++ +||||+|+|+.
T Consensus 43 DgvlVv~HD~~L~rtT~v~~~F~~r~~t~~idG~~~~g~~~~d~TlaELk~L~~~~~~~~r~~~~~g~~~IpTLeEvl~~ 122 (299)
T cd08603 43 DGVGICLPDLNLDNSTTIARVYPKRKKTYSVNGVSTKGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQYPISTVEDVVTL 122 (299)
T ss_pred CCcEEEeCCccccccCCCccccccccccccccccccCCceeccCCHHHHhhCCCCCCcccCCcccCCcCCCCCHHHHHHH
Confidence 9999999999999999641 13 599999999963 22344 89999999999
Q ss_pred HhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEeeCHHHHHHHHhhc--cCCeEEE-EEEe-cCC-----C
Q 028497 51 VSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAKSDNLVRDIMRLS--SNVTAGY-IIMV-DPS-----T 121 (208)
Q Consensus 51 ~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf~~~~l~~l~~~~--p~~~~~~-l~~~-~~~-----~ 121 (208)
++...+.++||+|.--....-.+++.+++++++++. .+|+||+...|+++++.. ++.++-+ +... ... +
T Consensus 123 ~~~~gi~i~ie~~~~~~~~gl~~~~~l~~~L~~~~~--v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~~~~~~~~ 200 (299)
T cd08603 123 AKPEGLWLNVQHDAFYQQHNLSMSSYLLSLSKTVKV--DYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDVEPSTNQT 200 (299)
T ss_pred hHhcCeEEEEecHHHHHHcCCCHHHHHHHHHHHcCc--EEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCcCCCCCcc
Confidence 977433455555532111113688999999998875 678999999999998752 5566654 3322 111 1
Q ss_pred ch-----hhhHhhhhcCceEeeccc---------c--cCHHHHHHHHhCCCeEEEeeCCCH------------HHHHHHH
Q 028497 122 GF-----RTNLLRIRKAGVVGVYHP---------L--IDEKLVRTFHGRNKRVFAWTVDDE------------DSMRKML 173 (208)
Q Consensus 122 ~~-----~~~~~~~~~~~~~~~~~~---------~--~~~~~v~~~~~~g~~v~~wtv~~~------------~~~~~~~ 173 (208)
+. ..+++ .-++.++++.. . ....+|+.+|++|+.|++||++++ .++..++
T Consensus 201 y~~~~~~L~eIa--~yAdgig~~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~tfr~e~~~~~~~~~d~~~e~~~~~ 278 (299)
T cd08603 201 YGSILKNLTFIK--TFASGILVPKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFANDFDISYNYSYDPVAEYLSFV 278 (299)
T ss_pred HHHHHHhHHHHH--HHHhhcCCChhheeecCCCCcccCccHHHHHHHHcCCeEEEEEeeCCCCccccccCCHHHHHHHHH
Confidence 11 11221 12333333321 1 124789999999999999998654 4667777
Q ss_pred hCC---CCEEEcCChHHHHH
Q 028497 174 HER---VDAVVTSNPILFQR 190 (208)
Q Consensus 174 ~~g---vd~i~TD~P~~~~~ 190 (208)
+.| ||||+||+|..+.+
T Consensus 279 ~~g~~~vDGvfTDfP~~a~~ 298 (299)
T cd08603 279 GNGNFSVDGVLSDFPITASE 298 (299)
T ss_pred hcCCCCCCEEEecCchhhcc
Confidence 777 99999999998754
No 41
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=99.91 E-value=4e-23 Score=157.66 Aligned_cols=129 Identities=18% Similarity=0.252 Sum_probs=103.2
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcccCCCcCCCHHHHHHHHhc------CCceEEEEeecCCCCCchhHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQKSHDQVITTIEDALTLVSN------SVRKVILDAKVGPPSYEKGLAK 75 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~~~~~~iptL~evL~~~~~------~~~~l~lEiK~~~~~~~~~~~~ 75 (208)
||++||+||.+++|+| .++++|||+|+|+++++ ..+.++||+|.....+ ..+.+
T Consensus 39 Dg~lvv~HD~~~~r~~-------------------~~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~-~~~~~ 98 (179)
T cd08555 39 DGELVVYHGPTLDRTT-------------------AGILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSPEY-DEFLA 98 (179)
T ss_pred CCeEEEECCCcccccc-------------------CCCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCCcc-hHHHH
Confidence 8999999999999987 25789999999999987 3568999999865433 36778
Q ss_pred HHHHHHHhcC---Cc-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeec-ccccCHHHHHH
Q 028497 76 DILSVIERTK---CY-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVY-HPLIDEKLVRT 150 (208)
Q Consensus 76 ~v~~~l~~~~---~~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~ 150 (208)
.+++++++++ +. +++++|| ....+. ..... ....++++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~v~i~sf--------------------~~~~~~--------------~~~~~~~~~~~~~~v~~ 144 (179)
T cd08555 99 KVLKELRVYFDYDLRGKVVLSSF--------------------NALGVD--------------YYNFSSKLIKDTELIAS 144 (179)
T ss_pred HHHHHHHHcCCcccCCCEEEEee--------------------cccCCC--------------hhcccchhhcCHHHHHH
Confidence 8999999987 54 4567888 000111 00000 34568999999
Q ss_pred HHhCCCeEEEeeCCC-HHHHHHHHhCCCCEEEcCC
Q 028497 151 FHGRNKRVFAWTVDD-EDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 151 ~~~~g~~v~~wtv~~-~~~~~~~~~~gvd~i~TD~ 184 (208)
+|++|++|++||+|+ ++++++++++|||||+||+
T Consensus 145 ~~~~g~~v~~wtvn~~~~~~~~l~~~Gvd~i~TD~ 179 (179)
T cd08555 145 ANKLGLLSRIWTVNDNNEIINKFLNLGVDGLITDF 179 (179)
T ss_pred HHHCCCEEEEEeeCChHHHHHHHHHcCCCEEeCCC
Confidence 999999999999999 9999999999999999996
No 42
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=99.80 E-value=1.9e-18 Score=140.74 Aligned_cols=180 Identities=11% Similarity=0.025 Sum_probs=128.2
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcc--------------------cCCCcCCCHHHHHHHHhcCCceEEEE
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQK--------------------SHDQVITTIEDALTLVSNSVRKVILD 61 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~--------------------~~~~~iptL~evL~~~~~~~~~l~lE 61 (208)
||++||+||.++.|+ | +.++|.++||+||+.. +.++++|||+|+|+.++.. ++++||
T Consensus 41 DgvpVV~HD~~i~~t-~-~~~~V~dlTleqL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pTL~evL~~lp~~-iglNIE 117 (300)
T cd08578 41 DGTPVVAPEWFVPVG-G-IKLLVSDLTAEQLESILDYSLDDLNSEISDMVDLKRLLSSRVVSLETLLELLPPS-IQLDIQ 117 (300)
T ss_pred CCEEEEECCCceEec-C-CcEEeecCcHHHHhccCCcccccccccccccchhhhhcCCcCCCHHHHHHhhccC-CeEEEE
Confidence 999999999999876 3 3589999999999631 2257899999999999775 799999
Q ss_pred eecCCCC----C---------chhHHHHHHHHHHhcC---------CcceEEEeeCHHHHHHHHhhccCCeEEEEEEec-
Q 028497 62 AKVGPPS----Y---------EKGLAKDILSVIERTK---------CYNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVD- 118 (208)
Q Consensus 62 iK~~~~~----~---------~~~~~~~v~~~l~~~~---------~~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~- 118 (208)
||-+... . -..+++.+++.+-++. ..+.+|+||++.+-..++..-|.+|+.+++...
T Consensus 118 IK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~Vf~har~~~~~~~~~R~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~ 197 (300)
T cd08578 118 VLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVVFDHARYLRHTPGSTRSIVFSSCNPEVCTILNWKQPNFPVFFAMNGLV 197 (300)
T ss_pred ECCCChHHhhhccccccchhHHHHHHHHHHHHHHHHhhhhcccCCCCCceEEeeCCHHHHHHHHhcCCCCCEEEEecCCc
Confidence 9987531 0 1367888888886552 233466899999877777767999998876532
Q ss_pred -CC---------------------Cch------hh---hHhhhhcCceEeeccc--ccCHHHHHHHHhCCCeEEEeeCCC
Q 028497 119 -PS---------------------TGF------RT---NLLRIRKAGVVGVYHP--LIDEKLVRTFHGRNKRVFAWTVDD 165 (208)
Q Consensus 119 -~~---------------------~~~------~~---~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~g~~v~~wtv~~ 165 (208)
+. .+. .. +++...+.-++..+.. ...|.+++.++++|+-+.+|+-+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~Si~~Av~fA~~~nL~Giv~~~~~L~~~P~lV~~ik~~GL~lv~~g~~~ 277 (300)
T cd08578 198 RNNDTLSFDTPHHLDSLAVDPQKLNEADPRSRSIKEAVRFAKNNNLLGLILPYSLLNIVPQLVESIKSRGLLLIASGEPE 277 (300)
T ss_pred cccccccccccccccccccccccccccCchhhhHHHHHHHHHHcCCcEEEecHHHHhhChHHHHHHHHcCCEEEEECCCC
Confidence 00 000 01 1122233333444433 467999999999999999999764
Q ss_pred HHHHHHHHhCCCCEEEcCC
Q 028497 166 EDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 166 ~~~~~~~~~~gvd~i~TD~ 184 (208)
+..-......||||++.+.
T Consensus 278 ~~~~~~~~~~~vnG~~~~~ 296 (300)
T cd08578 278 SLIEVAEAGDGINGVVTED 296 (300)
T ss_pred ccccccccccCCceEEeCC
Confidence 3333345567999999885
No 43
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.60 E-value=4e-14 Score=107.54 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=102.9
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcccCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQKSHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVI 81 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l 81 (208)
||++||+||++++| +|||+|+|+.+++. .++||||.. .+++.+++++
T Consensus 29 Dg~lVV~HD~~l~~-------------------------~PtLeEvL~~~~~~--~l~inIK~~------~l~~~l~~li 75 (192)
T cd08584 29 GGQLVISHDPFVKN-------------------------GELLEDWLKEYNHG--TLILNIKAE------GLELRLKKLL 75 (192)
T ss_pred CCeEEEECCCCCCC-------------------------CCCHHHHHHhcccc--cEEEEECch------hHHHHHHHHH
Confidence 89999999999862 49999999999764 589999964 6889999999
Q ss_pred HhcCCcce-EEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEee---cccccCHHHHHHHHhCCCe
Q 028497 82 ERTKCYNC-LVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGV---YHPLIDEKLVRTFHGRNKR 157 (208)
Q Consensus 82 ~~~~~~~~-ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~g~~ 157 (208)
+++++.++ ++.||++..+++++.-.+.+.++.-.. .+ ......++ ..++++=+ ....++.+.++...++|++
T Consensus 76 ~~~~~~~~vi~ssf~~~~l~~~~~~~~~i~tr~Se~-E~-~~~~~~~~--~~~~~VW~D~f~~~~~~~~~~~~~~~~~~~ 151 (192)
T cd08584 76 AEYGITNYFFLDMSVPDIIKYLENGEKRTATRVSEY-EP-IPTALSLY--EKADWVWIDSFTSLWLDNDLILKLLKAGKK 151 (192)
T ss_pred HhcCCcceEEEEcCCHHHHHHHhcCCCeeEEeeccc-cc-chHHHHhh--ccccEEEEecccccCCCHHHHHHHHHCCcE
Confidence 99998654 578899999999987665555543221 11 11100111 11332211 2235789999999999999
Q ss_pred EEEeeC-----CCHHHHHHHH--hC---CCCEEEcCChHH
Q 028497 158 VFAWTV-----DDEDSMRKML--HE---RVDAVVTSNPIL 187 (208)
Q Consensus 158 v~~wtv-----~~~~~~~~~~--~~---gvd~i~TD~P~~ 187 (208)
+.+=.. +-.+.++.+. +. .-++||||+|..
T Consensus 152 ~c~VSpELh~~~~~~~~~~~~~~~~~~~~~~~~CT~~p~~ 191 (192)
T cd08584 152 ICLVSPELHGRDHLAEWEAKQYIEFLKENFDALCTKVPDL 191 (192)
T ss_pred EEEECHHHcCCChHHHHHHHHhhhhccccCeeEeccCccc
Confidence 987643 3334444332 22 367999999975
No 44
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=99.18 E-value=1.9e-09 Score=86.02 Aligned_cols=54 Identities=28% Similarity=0.509 Sum_probs=50.1
Q ss_pred ccCHHHHHHHHhCCC-----eEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHHHHHHH
Q 028497 142 LIDEKLVRTFHGRNK-----RVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQRVMQDI 195 (208)
Q Consensus 142 ~~~~~~v~~~~~~g~-----~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~~~ 195 (208)
..+.++++.++++|. +|++||||+++.+++++++||||||||+|..+.+++++.
T Consensus 191 ~~~~~lv~~~~~rd~~g~i~kV~vWTVn~~~~~~~ll~~GVDGIITD~P~~i~~~l~~~ 249 (265)
T cd08576 191 RTCARLREAIKKRDTPGYLGKVYGWTSDKGSSVRKLLRLGVDGIITNYPKRIIDVLKES 249 (265)
T ss_pred cccHHHHHHHHHcCCCCcCCeEEEEeCCCHHHHHHHHhcCCCEEEECCHHHHHHHHHhc
Confidence 567899999999999 999999999999999999999999999999999888754
No 45
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=99.15 E-value=5.1e-10 Score=88.27 Aligned_cols=167 Identities=11% Similarity=0.065 Sum_probs=95.4
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcccC--CCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHH
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQKSH--DQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILS 79 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~~~--~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~ 79 (208)
||+++|.||..+.|. ...++++++++|.+... +.... ..+...+.|+||||...... -.++..+++
T Consensus 34 dg~l~V~Hd~~~l~~----~~tl~~Lyl~pL~~~l~~~n~~~~-------~~~~~~l~LlIDiKt~g~~t-~~~l~~~L~ 101 (228)
T cd08577 34 NGDLLVAHDEVDLSP----ARTLESLYLDPLLEILDQNNGQAY-------NDPEQPLQLLIDIKTDGEST-YPALEEVLK 101 (228)
T ss_pred CCEEEEEcChhHcCc----cCCHHHHhHHHHHHHHHHcCCCCC-------CCCCCceEEEEEECCCChHH-HHHHHHHHH
Confidence 899999999999886 26799999999965221 11111 22334579999999975321 145556666
Q ss_pred HHHhcCCc---------ce-EEEeeCHHHHHHHHhhccCCeEEEEEEecCC---------C---chhhhHhhhhcCceEe
Q 028497 80 VIERTKCY---------NC-LVWAKSDNLVRDIMRLSSNVTAGYIIMVDPS---------T---GFRTNLLRIRKAGVVG 137 (208)
Q Consensus 80 ~l~~~~~~---------~~-ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~---------~---~~~~~~~~~~~~~~~~ 137 (208)
.+++.+.. .+ +|.|.+...= .+. ++.+..+.+..... . .+..++.+..+....+
T Consensus 102 ~~~~~~~~~~~~~~~~~pvtvV~tGn~p~~-~~~---~~~~r~~f~D~~l~~~~~~~~~~~~~~~~S~~~~~~~~~~~~g 177 (228)
T cd08577 102 PYIDIGYLSYYDKLVPGPVTVVITGNRPKE-EVK---SQYPRYIFFDGRLDEDLPDEQLARLSPMISASFAKFSKWNGKG 177 (228)
T ss_pred HHHhcCceeecCcEEecCeEEEEeCCCChh-hhc---cccCCeEEEeCChhhccccccccccceEEEccHHHhcCCCCCC
Confidence 66666642 22 4567653210 011 11112111111100 0 0001121211111000
Q ss_pred e-ccccc--CHHHHHHHHhCCCeEEEeeCCC-HHHHHHHHhCCCCEEEcCC
Q 028497 138 V-YHPLI--DEKLVRTFHGRNKRVFAWTVDD-EDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 138 ~-~~~~~--~~~~v~~~~~~g~~v~~wtv~~-~~~~~~~~~~gvd~i~TD~ 184 (208)
. ..... =+++++.+|++|+++.+||+++ .+.+++++++||++|+||+
T Consensus 178 ~~~~~q~~~l~~~v~~a~~~Gl~vr~Wtv~~~~~~~~~l~~~GVd~I~TDd 228 (228)
T cd08577 178 DTPEDEKEKLKSIIDKAHARGKKVRFWGTPDRPNVWKTLMELGVDLLNTDD 228 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEccCChHHHHHHHHHhCCCEEecCC
Confidence 0 00001 1356888999999999999875 8889999999999999995
No 46
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=99.07 E-value=1.6e-10 Score=60.93 Aligned_cols=30 Identities=37% Similarity=0.638 Sum_probs=24.7
Q ss_pred eEEEeeCCCHHHHHHHHhCCCCEEEcCChH
Q 028497 157 RVFAWTVDDEDSMRKMLHERVDAVVTSNPI 186 (208)
Q Consensus 157 ~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~ 186 (208)
+|+.||+|+++.+++++++|||||+||+|.
T Consensus 1 kV~~WT~d~~~~~~~~l~~GVDgI~Td~p~ 30 (30)
T PF13653_consen 1 KVYFWTPDKPASWRELLDLGVDGIMTDYPD 30 (30)
T ss_dssp EEEEET--SHHHHHHHHHHT-SEEEES-HH
T ss_pred CeEEecCCCHHHHHHHHHcCCCEeeCCCCC
Confidence 689999999999999999999999999995
No 47
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=98.87 E-value=2.6e-09 Score=89.13 Aligned_cols=180 Identities=15% Similarity=0.161 Sum_probs=118.7
Q ss_pred CCceEEEEeCccchhhhCCCcccccccCHHHhhc-----ccCC-------CcCCCHHHHHHHHhcCCceEEEEeecCCCC
Q 028497 1 MESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQ-----KSHD-------QVITTIEDALTLVSNSVRKVILDAKVGPPS 68 (208)
Q Consensus 1 ~Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~-----~~~~-------~~iptL~evL~~~~~~~~~l~lEiK~~~~~ 68 (208)
.||++|++||.+..|+++. ...+.++||.|++. .... +++|+|+|..+.+-+.+..+.-|.| -
T Consensus 108 sDg~~v~l~d~~~~r~~~v-~~~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~~~~l~e~v~~~~~~n~~~l~d~~-~--- 182 (341)
T KOG2258|consen 108 SDGVPVILHDSTTVRVTGV-PEIVFDLTWMELRKLGPKIENPFAGPIITLEKLLTLAEAVASVVGNNVAMLNDVK-L--- 182 (341)
T ss_pred CCCceEEeecCcceeeecc-eeeeccCCHHHHhccCccccCcccccccchhhhccHHHHHHHHHcCChhhhhhhh-h---
Confidence 4899999999999999976 57799999999973 1222 6799999999999886666777777 1
Q ss_pred CchhHHHHHHHHHHhcCC----c-ceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecc---
Q 028497 69 YEKGLAKDILSVIERTKC----Y-NCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYH--- 140 (208)
Q Consensus 69 ~~~~~~~~v~~~l~~~~~----~-~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 140 (208)
...+.+++.+++.+. . +.+++||++-.+.++++..|.+.++-++...+..+. .+..+. +..+..+.
T Consensus 183 ---~~~~~vl~~l~~~~~~~~~~~kv~v~s~~~~~l~~~~~~~~~~~i~~~~~~~~ls~~-~dik~~--~~~~~~~~~~~ 256 (341)
T KOG2258|consen 183 ---LVVDKVLEALKNATSDFSLYDKVLVQSFNPIVLYRLKKLDPFILIGDTWRFTFLSGI-EDIKKR--AFAVVSSKLAI 256 (341)
T ss_pred ---hhHHHHHHHHHHHhcCCCccceEEEEecCcHHHHHhccCCceEEecceecchhhccc-hhhhcc--cceeeechHHH
Confidence 345566666655542 2 457899999999999999998777766654332221 122111 11111111
Q ss_pred --------cccCHHHHHHHHhCCCeEEEeeCCCH----HHHH---------HHHhCCCCEEEcCChHHHHHH
Q 028497 141 --------PLIDEKLVRTFHGRNKRVFAWTVDDE----DSMR---------KMLHERVDAVVTSNPILFQRV 191 (208)
Q Consensus 141 --------~~~~~~~v~~~~~~g~~v~~wtv~~~----~~~~---------~~~~~gvd~i~TD~P~~~~~~ 191 (208)
...+..++...++.+..++++..+.+ .+.- .....|++|..|+++-.+..+
T Consensus 257 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 328 (341)
T KOG2258|consen 257 FPVSDSLVLAITKNVVAPLQKLNLVVYVEVFNNEVVLAVDFSAAPTIELAGWITNVGIDGYITDFHLTAPRL 328 (341)
T ss_pred HHHHHHHhhhhhcceeeehhcCCcEEEEEEeeccceeeccccccCceEeeeeeccccccCceeeccchhhHh
Confidence 11233567778899999999887766 1111 112456666666666665543
No 48
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=96.52 E-value=0.12 Score=41.44 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=94.5
Q ss_pred ccCHHHhhcccCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCc----hhHHHHHHHHHHhcCCcce------EEEeeC
Q 028497 26 HLSMKEFAQKSHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYE----KGLAKDILSVIERTKCYNC------LVWAKS 95 (208)
Q Consensus 26 ~~t~~eL~~~~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~----~~~~~~v~~~l~~~~~~~~------ii~Sf~ 95 (208)
+..+.+++....... ..|.++|....++ ..+..|+|..++... ..-...+.+..+++|..-. -++..+
T Consensus 18 ~~~l~~~~~~~~~~~-r~f~~AL~~~~~~-~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs 95 (254)
T COG0134 18 KLPLAELRAKIRSAD-RDFYAALKEASGK-PAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQGS 95 (254)
T ss_pred ccchHHHhhhhhhcc-ccHHHHHHhcCCC-ceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccccCCC
Confidence 445566654333222 5677777776444 589999998765321 1222346677777775322 223346
Q ss_pred HHHHHHHHhhccCCeEEEEEEecCCC-chhhhHhhhhcCceEeecccccC----HHHHHHHHhCCCeEEEeeCCCHHHHH
Q 028497 96 DNLVRDIMRLSSNVTAGYIIMVDPST-GFRTNLLRIRKAGVVGVYHPLID----EKLVRTFHGRNKRVFAWTVDDEDSMR 170 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v~~wtv~~~~~~~ 170 (208)
.+.|+.+++. -.+|+ |.- ++-. ...-..++..|+|.+-.-...++ ++++..+++.|+.+.|=+ ++.++++
T Consensus 96 ~e~L~~v~~~-v~~Pv--L~K-DFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEV-h~~eEl~ 170 (254)
T COG0134 96 FEDLRAVRAA-VDLPV--LRK-DFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEV-HNEEELE 170 (254)
T ss_pred HHHHHHHHHh-cCCCe--eec-cCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEE-CCHHHHH
Confidence 6777777664 34554 222 1111 11112346689997765555554 467889999999988754 7889999
Q ss_pred HHHhCCCCEEEcCC
Q 028497 171 KMLHERVDAVVTSN 184 (208)
Q Consensus 171 ~~~~~gvd~i~TD~ 184 (208)
++++.|+..|=-|+
T Consensus 171 rAl~~ga~iIGINn 184 (254)
T COG0134 171 RALKLGAKIIGINN 184 (254)
T ss_pred HHHhCCCCEEEEeC
Confidence 99999999886664
No 49
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.21 E-value=0.25 Score=38.39 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHhcCCcceEEEeeCH---HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHH
Q 028497 72 GLAKDILSVIERTKCYNCLVWAKSD---NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLV 148 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf~~---~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 148 (208)
.-...+.+.+.+.|+.-.-|...++ +.++.+++.+|++.+|.-.=.++.+ .+.+...|++|+.. +..+++++
T Consensus 20 e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~---a~~a~~aGA~Fivs--P~~~~~v~ 94 (204)
T TIGR01182 20 DDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQ---LRQAVDAGAQFIVS--PGLTPELA 94 (204)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHH---HHHHHHcCCCEEEC--CCCCHHHH
Confidence 4445677777777764332322233 4677888778887776433212211 12224488998743 34689999
Q ss_pred HHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 149 RTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 149 ~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+.++++|+.+.. ++-++.++..++++|++.|--
T Consensus 95 ~~~~~~~i~~iP-G~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 95 KHAQDHGIPIIP-GVATPSEIMLALELGITALKL 127 (204)
T ss_pred HHHHHcCCcEEC-CCCCHHHHHHHHHCCCCEEEE
Confidence 999999999888 778999999999999998765
No 50
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.71 E-value=0.68 Score=36.27 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=79.8
Q ss_pred HHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEee-CH---HHHHHHHhhc---cCCeEEEEEEec
Q 028497 46 DALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAK-SD---NLVRDIMRLS---SNVTAGYIIMVD 118 (208)
Q Consensus 46 evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf-~~---~~l~~l~~~~---p~~~~~~l~~~~ 118 (208)
++++.+... ++.-=+...+ ......+.+.+.+-|+.-.= +++ ++ +.++.+++.+ |++.+|.-.=.+
T Consensus 5 ~~~~~l~~~--~vi~vir~~~----~~~a~~~~~al~~~Gi~~iE-it~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~ 77 (213)
T PRK06552 5 EILTKLKAN--GVVAVVRGES----KEEALKISLAVIKGGIKAIE-VTYTNPFASEVIKELVELYKDDPEVLIGAGTVLD 77 (213)
T ss_pred HHHHHHHHC--CEEEEEECCC----HHHHHHHHHHHHHCCCCEEE-EECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCC
Confidence 455666554 3444455543 24555677777777763221 333 23 4677777666 345555332111
Q ss_pred CCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCCh
Q 028497 119 PSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P 185 (208)
+. .-+.+...|++|+. .+.+++++++.++++|+++.. ++.++.++..+++.|+|.|-- +|
T Consensus 78 ~~---~~~~a~~aGA~Fiv--sP~~~~~v~~~~~~~~i~~iP-G~~T~~E~~~A~~~Gad~vkl-FP 137 (213)
T PRK06552 78 AV---TARLAILAGAQFIV--SPSFNRETAKICNLYQIPYLP-GCMTVTEIVTALEAGSEIVKL-FP 137 (213)
T ss_pred HH---HHHHHHHcCCCEEE--CCCCCHHHHHHHHHcCCCEEC-CcCCHHHHHHHHHcCCCEEEE-CC
Confidence 11 11223448888865 456889999999999999877 556889999999999999987 55
No 51
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.64 E-value=0.8 Score=35.84 Aligned_cols=141 Identities=8% Similarity=-0.024 Sum_probs=88.4
Q ss_pred CHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEE-EeeC--HHHHHHHHhhccCCeEEEEEEecC
Q 028497 43 TIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLV-WAKS--DNLVRDIMRLSSNVTAGYIIMVDP 119 (208)
Q Consensus 43 tL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii-~Sf~--~~~l~~l~~~~p~~~~~~l~~~~~ 119 (208)
|..++++.+.+. ++.-=+...+ ..-...+.+.+.+.|+.-.=| +... .+.++.+++.+|++.+|.-.-..+
T Consensus 4 ~~~~~~~~l~~~--~~iaV~r~~~----~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~ 77 (212)
T PRK05718 4 WKTSIEEILRAG--PVVPVIVINK----LEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNP 77 (212)
T ss_pred hHHHHHHHHHHC--CEEEEEEcCC----HHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCH
Confidence 345666666654 3333344433 244456777777777642212 2221 256788888889877764432222
Q ss_pred CCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHH---HHHHHHHH
Q 028497 120 STGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILF---QRVMQDIR 196 (208)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~---~~~~~~~~ 196 (208)
. ..+.+...|++|+... .++++.++.++++|+.+.. ++-++.++..++++|++.|.- +|... ..+++.++
T Consensus 78 ~---~a~~a~~aGA~FivsP--~~~~~vi~~a~~~~i~~iP-G~~TptEi~~a~~~Ga~~vKl-FPa~~~gg~~~lk~l~ 150 (212)
T PRK05718 78 E---QLAQAIEAGAQFIVSP--GLTPPLLKAAQEGPIPLIP-GVSTPSELMLGMELGLRTFKF-FPAEASGGVKMLKALA 150 (212)
T ss_pred H---HHHHHHHcCCCEEECC--CCCHHHHHHHHHcCCCEeC-CCCCHHHHHHHHHCCCCEEEE-ccchhccCHHHHHHHh
Confidence 1 1123344889986543 3678999999999998654 345777899999999999988 88664 35666554
No 52
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.54 E-value=0.28 Score=37.66 Aligned_cols=88 Identities=19% Similarity=0.107 Sum_probs=62.3
Q ss_pred CHHHHHHHHhhccCCeEEEEEE-ecCCCchhhhHhhhhcCceEeeccccc---CHHHHHHHHhCCCeEEE--eeCCCHHH
Q 028497 95 SDNLVRDIMRLSSNVTAGYIIM-VDPSTGFRTNLLRIRKAGVVGVYHPLI---DEKLVRTFHGRNKRVFA--WTVDDEDS 168 (208)
Q Consensus 95 ~~~~l~~l~~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~g~~v~~--wtv~~~~~ 168 (208)
-.+.++.+++..|++++..-.. .++.... .+.....|++++.++.... ..++++.++++|+++.+ -+..++.+
T Consensus 40 g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~-~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e 118 (202)
T cd04726 40 GMEAVRALREAFPDKIIVADLKTADAGALE-AEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEK 118 (202)
T ss_pred CHHHHHHHHHHCCCCEEEEEEEeccccHHH-HHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHH
Confidence 4678889998778888765433 2232111 1223458999888765432 25688999999999986 68889888
Q ss_pred HHHHHhCCCCEEEcC
Q 028497 169 MRKMLHERVDAVVTS 183 (208)
Q Consensus 169 ~~~~~~~gvd~i~TD 183 (208)
..++...|+|.+...
T Consensus 119 ~~~~~~~~~d~v~~~ 133 (202)
T cd04726 119 RAKLLKLGVDIVILH 133 (202)
T ss_pred HHHHHHCCCCEEEEc
Confidence 888889999998763
No 53
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=95.14 E-value=0.84 Score=36.69 Aligned_cols=136 Identities=16% Similarity=0.126 Sum_probs=76.5
Q ss_pred HHHHHHHHhcC----CceEEEEeecCCCCCchhHHHHHHHHHHhcCCc-ceEEEee-------CHH-HHHHHHhhc-cCC
Q 028497 44 IEDALTLVSNS----VRKVILDAKVGPPSYEKGLAKDILSVIERTKCY-NCLVWAK-------SDN-LVRDIMRLS-SNV 109 (208)
Q Consensus 44 L~evL~~~~~~----~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~-~~ii~Sf-------~~~-~l~~l~~~~-p~~ 109 (208)
++.++..+... ...+.+.+-..... ...+...+.+++++++.. .++++-. +.. +...++++. -++
T Consensus 72 ~~~a~~~~~~~~~~~~~~l~iNis~~~l~-~~~~~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~ 150 (256)
T COG2200 72 LEEACRQLRTWPRAGPLRLAVNLSPVQLR-SPGLVDLLLRLLARLGLPPHRLVLEITESALIDDLDTALALLRQLRELGV 150 (256)
T ss_pred HHHHHHHHHhhhhcCCceEEEEcCHHHhC-CchHHHHHHHHHHHhCCCcceEEEEEeCchhhcCHHHHHHHHHHHHHCCC
Confidence 45555554421 13455555442221 236777888888888763 3433211 222 222233321 124
Q ss_pred eEEEEEEecCCCc-hhhhHhhhhcCceEeeccc------------ccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCC
Q 028497 110 TAGYIIMVDPSTG-FRTNLLRIRKAGVVGVYHP------------LIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHER 176 (208)
Q Consensus 110 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~g 176 (208)
+++ . .+.+.+ +.-++.+...++++-+... .+-..++..+|+.|+.|.+-+|.++++++.+.++|
T Consensus 151 ~ia--l-DDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGVEt~~ql~~L~~~G 227 (256)
T COG2200 151 RIA--L-DDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGVETEEQLDLLRELG 227 (256)
T ss_pred eEE--E-ECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeecCCHHHHHHHHHcC
Confidence 443 2 233332 1122233355555544321 13356788899999999999999999999999999
Q ss_pred CCEEEcC
Q 028497 177 VDAVVTS 183 (208)
Q Consensus 177 vd~i~TD 183 (208)
||.++-.
T Consensus 228 ~~~~QGy 234 (256)
T COG2200 228 CDYLQGY 234 (256)
T ss_pred CCeEeec
Confidence 9988776
No 54
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=95.04 E-value=0.99 Score=37.78 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=79.7
Q ss_pred ceEEEEeecCCCCC----chhHHHHHHHHHHhcCCcce------EEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchh-
Q 028497 56 RKVILDAKVGPPSY----EKGLAKDILSVIERTKCYNC------LVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFR- 124 (208)
Q Consensus 56 ~~l~lEiK~~~~~~----~~~~~~~v~~~l~~~~~~~~------ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~- 124 (208)
..+.-|+|..++.. +..-...+++..++.|..-. -++..+.+.|+.+|+..-++|+ |.. ++-...+
T Consensus 119 ~~vIAEvKrASPSkG~I~~~~dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPv--LrK-DFIID~yQ 195 (338)
T PLN02460 119 PGLIAEVKKASPSRGVLRENFDPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPL--LCK-EFIVDAWQ 195 (338)
T ss_pred cceEeeeccCCCCCCccCCCCCHHHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCE--eec-cccCCHHH
Confidence 47999999865421 11122345666666665321 2233467778888875345555 222 1111111
Q ss_pred hhHhhhhcCceEeecccccCH----HHHHHHHhCCCeEEEeeCCCHHHHHHHHhC-CCCEEEcCC
Q 028497 125 TNLLRIRKAGVVGVYHPLIDE----KLVRTFHGRNKRVFAWTVDDEDSMRKMLHE-RVDAVVTSN 184 (208)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~-gvd~i~TD~ 184 (208)
-.-++..|+|.+..-...+++ ++++.+++.|+.+.| -|+++++++++++. |++.|=-|+
T Consensus 196 I~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINN 259 (338)
T PLN02460 196 IYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINN 259 (338)
T ss_pred HHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeC
Confidence 122366899987665555553 578889999999877 56899999999998 999988876
No 55
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=94.98 E-value=1.1 Score=36.19 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=87.3
Q ss_pred cCHHHhhcc-cCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCC----chhHHHHHHHHHHhcCCcceEE-E--ee---C
Q 028497 27 LSMKEFAQK-SHDQVITTIEDALTLVSNSVRKVILDAKVGPPSY----EKGLAKDILSVIERTKCYNCLV-W--AK---S 95 (208)
Q Consensus 27 ~t~~eL~~~-~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~----~~~~~~~v~~~l~~~~~~~~ii-~--Sf---~ 95 (208)
.++++|+.. ....+...|.+.|...++. ..+.-|+|..++.. ...-...+.....+.|..-..+ . -| +
T Consensus 19 ~~~~~l~~~~~~~~~~~~f~~aL~~~~~~-~~vIAEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs 97 (254)
T PF00218_consen 19 VPLEELKKRIEAAPPPRSFKEALRQNEGR-ISVIAEIKRASPSKGDIREDFDPAEIAKAYEEAGAAAISVLTEPKFFGGS 97 (254)
T ss_dssp SHHHHHHHHHHCSS-TTHHHHHHHSHTSS--EEEEEE-SEETTTEESBSS-SHHHHHHHHHHTT-SEEEEE--SCCCHHH
T ss_pred CCHHHHHHHHhhCCCCCCHHHHHhcCCCC-CeEEEEeecCCCCCCccCccCCHHHHHHHHHhcCCCEEEEECCCCCCCCC
Confidence 344555543 2345667788888776444 69999999865531 1123345666777777643322 1 12 4
Q ss_pred HHHHHHHHhhccCCeEEEEEEecCCCchhhh--HhhhhcCceEeecccccC----HHHHHHHHhCCCeEEEeeCCCHHHH
Q 028497 96 DNLVRDIMRLSSNVTAGYIIMVDPSTGFRTN--LLRIRKAGVVGVYHPLID----EKLVRTFHGRNKRVFAWTVDDEDSM 169 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v~~wtv~~~~~~ 169 (208)
.+.|..+++.. ++|+ +.. ++-. .+.. -++..|+|.+......++ .++++.++..|+.+.|= |++++++
T Consensus 98 ~~dL~~v~~~~-~~Pv--L~K-DFIi-d~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVE-Vh~~~El 171 (254)
T PF00218_consen 98 LEDLRAVRKAV-DLPV--LRK-DFII-DPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVE-VHNEEEL 171 (254)
T ss_dssp HHHHHHHHHHS-SS-E--EEE-S----SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEE-ESSHHHH
T ss_pred HHHHHHHHHHh-CCCc--ccc-cCCC-CHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEE-ECCHHHH
Confidence 55666666642 4555 222 2211 1112 235689998876666555 45788899999998774 5788999
Q ss_pred HHHHhCCCCEEEcCC
Q 028497 170 RKMLHERVDAVVTSN 184 (208)
Q Consensus 170 ~~~~~~gvd~i~TD~ 184 (208)
++++..|++.|--|+
T Consensus 172 ~~al~~~a~iiGINn 186 (254)
T PF00218_consen 172 ERALEAGADIIGINN 186 (254)
T ss_dssp HHHHHTT-SEEEEES
T ss_pred HHHHHcCCCEEEEeC
Confidence 999999999887774
No 56
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=94.92 E-value=1.6 Score=35.03 Aligned_cols=133 Identities=13% Similarity=0.102 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCCceEEEEeecCCCCCc----hhHHHHHHHHHHhcCCcce------EEEeeCHHHHHHHHhhccCCeEEE
Q 028497 44 IEDALTLVSNSVRKVILDAKVGPPSYE----KGLAKDILSVIERTKCYNC------LVWAKSDNLVRDIMRLSSNVTAGY 113 (208)
Q Consensus 44 L~evL~~~~~~~~~l~lEiK~~~~~~~----~~~~~~v~~~l~~~~~~~~------ii~Sf~~~~l~~l~~~~p~~~~~~ 113 (208)
|.+.| ....+.+..|+|..++... ..-...++...++.|..-. -++..+.+.++.+++. -++|+
T Consensus 32 ~~~~l---~~~~~~vIaEiKr~SPs~G~i~~~~d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~-v~~Pv-- 105 (247)
T PRK13957 32 LRDSL---KSRSFSIIAECKRKSPSAGELRADYHPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSE-LKIPV-- 105 (247)
T ss_pred HHHHH---hCCCCeEEEEEecCCCCCCCcCCCCCHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHh-cCCCE--
Confidence 55544 2333689999998654211 1122345555666665322 1233467778888774 23454
Q ss_pred EEEecCCCchhhhH--hhhhcCceEeecccccCH----HHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCCh
Q 028497 114 IIMVDPSTGFRTNL--LRIRKAGVVGVYHPLIDE----KLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 114 l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P 185 (208)
+.. ++-. .+..+ ++..|+|.+......+++ ++++.+++.|+.+.+ -|++.++++++++.|++.|--|+=
T Consensus 106 L~K-DFIi-d~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LV-EVh~~~El~~a~~~ga~iiGINnR 180 (247)
T PRK13957 106 LRK-DFIL-DEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLV-EVHTEDEAKLALDCGAEIIGINTR 180 (247)
T ss_pred Eec-cccC-CHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEE-EECCHHHHHHHHhCCCCEEEEeCC
Confidence 222 1111 11122 245899988777776664 478889999999887 457899999999999999877743
No 57
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.87 E-value=0.93 Score=34.66 Aligned_cols=117 Identities=10% Similarity=0.067 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCCcceEEEeeCH---HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHH
Q 028497 73 LAKDILSVIERTKCYNCLVWAKSD---NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVR 149 (208)
Q Consensus 73 ~~~~v~~~l~~~~~~~~ii~Sf~~---~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 149 (208)
-...+++.+.+.|+.-..+-..+. +.++.+++.+|++.+|.-.-..+ ..-+.....|++++.. +..+++.++
T Consensus 17 ~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~---~~~~~a~~~Ga~~i~~--p~~~~~~~~ 91 (190)
T cd00452 17 DALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTP---EQADAAIAAGAQFIVS--PGLDPEVVK 91 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCH---HHHHHHHHcCCCEEEc--CCCCHHHHH
Confidence 334556666676764443433333 46778888788777763321111 1113334588888753 345688999
Q ss_pred HHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCC-hHHHHHHHHHH
Q 028497 150 TFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSN-PILFQRVMQDI 195 (208)
Q Consensus 150 ~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~-P~~~~~~~~~~ 195 (208)
.++..|.++.+ ++.+.+++.++.+.|+|.|..+. +..-.++++..
T Consensus 92 ~~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l 137 (190)
T cd00452 92 AANRAGIPLLP-GVATPTEIMQALELGADIVKLFPAEAVGPAYIKAL 137 (190)
T ss_pred HHHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCCcccCHHHHHHH
Confidence 99999998765 67799999999999999998752 22234444443
No 58
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.84 E-value=1.5 Score=34.65 Aligned_cols=125 Identities=12% Similarity=0.104 Sum_probs=76.1
Q ss_pred HHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEee-CH---HHHHHHH----hhccCCeEEEEEE
Q 028497 45 EDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAK-SD---NLVRDIM----RLSSNVTAGYIIM 116 (208)
Q Consensus 45 ~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf-~~---~~l~~l~----~~~p~~~~~~l~~ 116 (208)
.++++.+.+.. +.-=+-..+ ......+.+.+.+.|+. .+=+++ ++ +.++.++ +..|++.+|.-.=
T Consensus 6 ~~~~~~l~~~~--vi~Vvr~~~----~~~a~~~~~al~~gGi~-~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTV 78 (222)
T PRK07114 6 IAVLTAMKATG--MVPVFYHAD----VEVAKKVIKACYDGGAR-VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSI 78 (222)
T ss_pred HHHHHHHHhCC--EEEEEEcCC----HHHHHHHHHHHHHCCCC-EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeC
Confidence 46666666542 332233332 24555677777777763 332333 22 4455554 3356666664332
Q ss_pred ecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 117 VDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
.++.+ .+.+...|++|+.. +.+++++++.++++|+++..= +-++.++..++++|++.|--
T Consensus 79 l~~e~---a~~a~~aGA~FiVs--P~~~~~v~~~~~~~~i~~iPG-~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 79 VDAAT---AALYIQLGANFIVT--PLFNPDIAKVCNRRKVPYSPG-CGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred cCHHH---HHHHHHcCCCEEEC--CCCCHHHHHHHHHcCCCEeCC-CCCHHHHHHHHHCCCCEEEE
Confidence 12211 12234488888643 348899999999999997664 45899999999999998654
No 59
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.60 E-value=0.53 Score=36.34 Aligned_cols=117 Identities=9% Similarity=-0.017 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHhcCCcceEEEee-C---HHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHH
Q 028497 72 GLAKDILSVIERTKCYNCLVWAK-S---DNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKL 147 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf-~---~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (208)
+....+.+.+-+-|+. .+=+++ + .+.++.+++.+|++-+|.-.=.++ ...+.+...|++|+... .+++++
T Consensus 20 ~~a~~~~~al~~gGi~-~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~---e~a~~a~~aGA~FivSP--~~~~~v 93 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIR-AIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTA---EQAEAAIAAGAQFIVSP--GFDPEV 93 (196)
T ss_dssp GGHHHHHHHHHHTT---EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SH---HHHHHHHHHT-SEEEES--S--HHH
T ss_pred HHHHHHHHHHHHCCCC-EEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCH---HHHHHHHHcCCCEEECC--CCCHHH
Confidence 4445677777777763 222333 2 256777888889988874321111 11122344889986543 488999
Q ss_pred HHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHH---HHHHHHHH
Q 028497 148 VRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILF---QRVMQDIR 196 (208)
Q Consensus 148 v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~---~~~~~~~~ 196 (208)
+++++++|+.+..=. -++.++..++++|++.+-- +|... .++++.++
T Consensus 94 ~~~~~~~~i~~iPG~-~TptEi~~A~~~G~~~vK~-FPA~~~GG~~~ik~l~ 143 (196)
T PF01081_consen 94 IEYAREYGIPYIPGV-MTPTEIMQALEAGADIVKL-FPAGALGGPSYIKALR 143 (196)
T ss_dssp HHHHHHHTSEEEEEE-SSHHHHHHHHHTT-SEEEE-TTTTTTTHHHHHHHHH
T ss_pred HHHHHHcCCcccCCc-CCHHHHHHHHHCCCCEEEE-ecchhcCcHHHHHHHh
Confidence 999999999987755 4889999999999998765 34333 34555544
No 60
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.57 E-value=0.9 Score=35.24 Aligned_cols=117 Identities=5% Similarity=-0.002 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhcCCcceEEEeeCH---HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHH
Q 028497 72 GLAKDILSVIERTKCYNCLVWAKSD---NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLV 148 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf~~---~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 148 (208)
.....+.+.+.+.|+.-.=|...++ +.++.+++.+|++.+|.-.=.++.+ .+.+...|++|+... .++++++
T Consensus 16 ~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~---a~~ai~aGA~FivSP--~~~~~vi 90 (201)
T PRK06015 16 EHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQ---FEDAAKAGSRFIVSP--GTTQELL 90 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHH---HHHHHHcCCCEEECC--CCCHHHH
Confidence 4445677777777764332322233 4567777667887776433212211 122234788886543 4889999
Q ss_pred HHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChH-HH--HHHHHHH
Q 028497 149 RTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPI-LF--QRVMQDI 195 (208)
Q Consensus 149 ~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~-~~--~~~~~~~ 195 (208)
+.++++|+.+..= +-++.++..++++|++.|-- +|. .+ -.+++.+
T Consensus 91 ~~a~~~~i~~iPG-~~TptEi~~A~~~Ga~~vK~-FPa~~~GG~~yikal 138 (201)
T PRK06015 91 AAANDSDVPLLPG-AATPSEVMALREEGYTVLKF-FPAEQAGGAAFLKAL 138 (201)
T ss_pred HHHHHcCCCEeCC-CCCHHHHHHHHHCCCCEEEE-CCchhhCCHHHHHHH
Confidence 9999999997664 45899999999999998765 443 33 3555544
No 61
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=94.37 E-value=0.66 Score=38.81 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=38.0
Q ss_pred CceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 133 AGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 133 ~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
++++.......+++.++.+|..|++++. ++.+..+++++.+.|+|+|+.
T Consensus 114 ~~~v~~~~G~p~~~~i~~l~~~gi~v~~-~v~s~~~A~~a~~~G~D~iv~ 162 (330)
T PF03060_consen 114 PDVVSFGFGLPPPEVIERLHAAGIKVIP-QVTSVREARKAAKAGADAIVA 162 (330)
T ss_dssp -SEEEEESSSC-HHHHHHHHHTT-EEEE-EESSHHHHHHHHHTT-SEEEE
T ss_pred eEEEEeecccchHHHHHHHHHcCCcccc-ccCCHHHHHHhhhcCCCEEEE
Confidence 4466666666668999999999998775 778999999999999999984
No 62
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=94.29 E-value=1.7 Score=33.49 Aligned_cols=87 Identities=13% Similarity=-0.003 Sum_probs=57.4
Q ss_pred HHHHHHHHhhccCCeEEEEEE-ecCCCchhhhHhhhhcCceEeeccccc---CHHHHHHHHhCCCeEEEe--eCCC-HHH
Q 028497 96 DNLVRDIMRLSSNVTAGYIIM-VDPSTGFRTNLLRIRKAGVVGVYHPLI---DEKLVRTFHGRNKRVFAW--TVDD-EDS 168 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~g~~v~~w--tv~~-~~~ 168 (208)
.+.++.+++.+|+..+..-.. .+|.... -+.....|++++.++...- ..++++.++++|+++.+- +..+ .++
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~d~~~~~-~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~ 118 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTMDAGEYE-AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKR 118 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeeccchHHH-HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHH
Confidence 567888888877655543221 1333211 1222448999888765432 257889999999999864 3333 467
Q ss_pred HHHHHhCCCCEEEcC
Q 028497 169 MRKMLHERVDAVVTS 183 (208)
Q Consensus 169 ~~~~~~~gvd~i~TD 183 (208)
++.+.+.|+|.|..+
T Consensus 119 ~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 119 AKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHcCCCEEEEc
Confidence 888889999999876
No 63
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.25 E-value=2.4 Score=34.24 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=89.7
Q ss_pred ccCHHHhhcccCCCcC-CCHHHHHHHHhcCCceEEEEeecCCCCCc----hhHHHHHHHHHHhcCCcceE------EEee
Q 028497 26 HLSMKEFAQKSHDQVI-TTIEDALTLVSNSVRKVILDAKVGPPSYE----KGLAKDILSVIERTKCYNCL------VWAK 94 (208)
Q Consensus 26 ~~t~~eL~~~~~~~~i-ptL~evL~~~~~~~~~l~lEiK~~~~~~~----~~~~~~v~~~l~~~~~~~~i------i~Sf 94 (208)
..++++|+......+. -.|.+.|. ...+.+.-|+|..++... ..-...+.+...+.|..-.. ++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g 98 (260)
T PRK00278 22 QVPLAELKARAAAAPPPRDFAAALR---AGKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQG 98 (260)
T ss_pred cCCHHHHHHHHhhCCCCcCHHHHHh---cCCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCC
Confidence 4456666542211111 23555554 333689999998654310 11223556666666653221 2334
Q ss_pred CHHHHHHHHhhccCCeEEEEEEecCCCch-hhhHhhhhcCceEeecccccC----HHHHHHHHhCCCeEEEeeCCCHHHH
Q 028497 95 SDNLVRDIMRLSSNVTAGYIIMVDPSTGF-RTNLLRIRKAGVVGVYHPLID----EKLVRTFHGRNKRVFAWTVDDEDSM 169 (208)
Q Consensus 95 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v~~wtv~~~~~~ 169 (208)
+.+.++.+++. -++|+.. . ++.... .-......|+|++......++ .++++.++..|+.+.+=+ ++.+++
T Consensus 99 ~~~~l~~v~~~-v~iPvl~--k-dfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvev-h~~~E~ 173 (260)
T PRK00278 99 SLEYLRAARAA-VSLPVLR--K-DFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEV-HDEEEL 173 (260)
T ss_pred CHHHHHHHHHh-cCCCEEe--e-eecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEe-CCHHHH
Confidence 67788888874 4567642 1 111111 112235589999887655544 357888999999988765 566788
Q ss_pred HHHHhCCCCEEEcCC
Q 028497 170 RKMLHERVDAVVTSN 184 (208)
Q Consensus 170 ~~~~~~gvd~i~TD~ 184 (208)
+++.+.|++.|..|.
T Consensus 174 ~~A~~~gadiIgin~ 188 (260)
T PRK00278 174 ERALKLGAPLIGINN 188 (260)
T ss_pred HHHHHcCCCEEEECC
Confidence 899999999998663
No 64
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=94.13 E-value=0.2 Score=40.69 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCCeEEEeeCCCH------------HHHHHHHhCCCCEEEcCC----hHHHHHHHHHHHhhhhhcC
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDE------------DSMRKMLHERVDAVVTSN----PILFQRVMQDIRTQCLEEG 203 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~------------~~~~~~~~~gvd~i~TD~----P~~~~~~~~~~~~~~~~~~ 203 (208)
++++++++++|+.|.+|.-... +.+.++.++||.||=+|+ -+.+.++..+....|.+.+
T Consensus 76 ~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~ 150 (273)
T PF10566_consen 76 PELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYK 150 (273)
T ss_dssp HHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcC
Confidence 6889999999999999986543 567888899999998884 5566777778888888877
No 65
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=93.58 E-value=0.94 Score=37.72 Aligned_cols=104 Identities=9% Similarity=0.072 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCcceE-EEeeCHH----HHHHHHhhccCCeEEEEEEe-cCCCch--hhhHhhhhcCceEeecccccCHHH
Q 028497 76 DILSVIERTKCYNCL-VWAKSDN----LVRDIMRLSSNVTAGYIIMV-DPSTGF--RTNLLRIRKAGVVGVYHPLIDEKL 147 (208)
Q Consensus 76 ~v~~~l~~~~~~~~i-i~Sf~~~----~l~~l~~~~p~~~~~~l~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 147 (208)
.++..+...|.--.+ ....+++ .+++++++..+-|.|..+.. .+.... .-++....++.++..... .+..
T Consensus 18 ~LaaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G--~P~~ 95 (320)
T cd04743 18 EFAVAVAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGG--RPDQ 95 (320)
T ss_pred HHHHHHHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCC--ChHH
Confidence 455566666532222 1223444 34556665456677765421 111111 112223356776655432 3344
Q ss_pred HHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 148 VRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 148 v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
++.+|+.|++|+ +++-+....+++.+.|+|+|+-
T Consensus 96 ~~~lk~~Gi~v~-~~v~s~~~A~~a~~~GaD~vVa 129 (320)
T cd04743 96 ARALEAIGISTY-LHVPSPGLLKQFLENGARKFIF 129 (320)
T ss_pred HHHHHHCCCEEE-EEeCCHHHHHHHHHcCCCEEEE
Confidence 799999999987 6667888999999999999984
No 66
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=93.19 E-value=0.53 Score=35.65 Aligned_cols=49 Identities=18% Similarity=0.382 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCeEEEee------CCCHHHHHHHHhCC-CCEEEcCChHHHHHHHH
Q 028497 145 EKLVRTFHGRNKRVFAWT------VDDEDSMRKMLHER-VDAVVTSNPILFQRVMQ 193 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wt------v~~~~~~~~~~~~g-vd~i~TD~P~~~~~~~~ 193 (208)
++.++.+|++|+.|++-. -+|+..++++.+.+ +|||||=++..+..+.+
T Consensus 34 ~~~v~~~~~~gK~vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIISTk~~~i~~Ak~ 89 (175)
T PF04309_consen 34 KDIVKRLKAAGKKVFVHIDLIEGLSRDEAGIEYLKEYGKPDGIISTKSNLIKRAKK 89 (175)
T ss_dssp HHHHHHHHHTT-EEEEECCGEETB-SSHHHHHHHHHTT--SEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeCCHHHHHHHHH
Confidence 789999999999999864 25788999999988 99999999999887654
No 67
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=93.09 E-value=1.8 Score=36.66 Aligned_cols=155 Identities=13% Similarity=0.165 Sum_probs=81.4
Q ss_pred CcCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcce-EEEeeCHHHHHHHHhhccCCeEEEEEEe
Q 028497 39 QVITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNC-LVWAKSDNLVRDIMRLSSNVTAGYIIMV 117 (208)
Q Consensus 39 ~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~-ii~Sf~~~~l~~l~~~~p~~~~~~l~~~ 117 (208)
..+..|.++++++++.+..+.+||=....... .+-..-++.+++.|..-. +=..|+.+.+..+.+. ++++.+..+.
T Consensus 44 ~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~l-g~~~~dl~~~~~lGi~~lRlD~Gf~~~~ia~ls~n--g~~I~LNASt 120 (357)
T PF05913_consen 44 DYLERLKELLKLAKELGMEVIADISPKVLKKL-GISYDDLSFFKELGIDGLRLDYGFSGEEIAKLSKN--GIKIELNAST 120 (357)
T ss_dssp -HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTT-T-BTTBTHHHHHHT-SEEEESSS-SCHHHHHHTTT---SEEEEETTT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCHHHHHHc-CCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHhC--CCEEEEECCC
Confidence 34566888999999888899999876521100 000001345667776443 3378888888888765 6888776653
Q ss_pred cCCCchhhhHhhhhcCc---eEee--ccc----ccCHHH----HHHHHhCCCeEEEeeCCC-------------------
Q 028497 118 DPSTGFRTNLLRIRKAG---VVGV--YHP----LIDEKL----VRTFHGRNKRVFAWTVDD------------------- 165 (208)
Q Consensus 118 ~~~~~~~~~~~~~~~~~---~~~~--~~~----~~~~~~----v~~~~~~g~~v~~wtv~~------------------- 165 (208)
-... ....+.+ .|++ +.++ .|+ -++.++ -+.+|+.|+++.++...+
T Consensus 121 i~~~-~l~~L~~-~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~~rGPl~~GLPTlE~hR~ 198 (357)
T PF05913_consen 121 ITEE-ELDELIK-YGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDENKRGPLYEGLPTLEKHRN 198 (357)
T ss_dssp --CC-HHHHHCC-TT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS-BTTT-S--BSBGGGTT
T ss_pred CChH-HHHHHHH-hcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCcccCCccCCCCccHHHcC
Confidence 1111 1122322 3432 2222 222 344444 345899999999986543
Q ss_pred ---HHHHHHHHhCC-CCEEEcCChHHHHHHHHHHHhh
Q 028497 166 ---EDSMRKMLHER-VDAVVTSNPILFQRVMQDIRTQ 198 (208)
Q Consensus 166 ---~~~~~~~~~~g-vd~i~TD~P~~~~~~~~~~~~~ 198 (208)
...+..++..| +|.|+--+|..-.+-++....-
T Consensus 199 ~~p~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 199 LPPYAAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp S-HHHHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred CCHHHHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 14688888888 9999999887666666655443
No 68
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=93.06 E-value=3.5 Score=38.10 Aligned_cols=123 Identities=12% Similarity=0.100 Sum_probs=78.4
Q ss_pred ceEEEEeecCCCCC----chhHHHHHHHHHHhcCCcce------EEEeeCHHHHHHHHhhccCCeEEEEEEecCCCc-hh
Q 028497 56 RKVILDAKVGPPSY----EKGLAKDILSVIERTKCYNC------LVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTG-FR 124 (208)
Q Consensus 56 ~~l~lEiK~~~~~~----~~~~~~~v~~~l~~~~~~~~------ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~-~~ 124 (208)
..+.-|+|..++.. ...-...+++..++.|..-. -++..+.+.|+.+++. -++|+ |.. ++... ..
T Consensus 50 ~~vIaEiKraSPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~-v~~Pv--LrK-DFIid~~Q 125 (695)
T PRK13802 50 IPVIAEIKRASPSKGHLSDIPDPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAA-VHIPV--LRK-DFIVTDYQ 125 (695)
T ss_pred CeEEEEeecCCCCCCcCCCCCCHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHh-CCCCE--Eec-cccCCHHH
Confidence 57999999876421 01122345555666665322 1233467778888774 34554 222 22111 00
Q ss_pred hhHhhhhcCceEeecccccCH----HHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 125 TNLLRIRKAGVVGVYHPLIDE----KLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
-.-++..|+|.+......+++ ++++.+++.|+.+.| -|++.++++++++.|++.|--|
T Consensus 126 I~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~Lv-Evh~~~el~~a~~~ga~iiGIN 187 (695)
T PRK13802 126 IWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLV-ETHTREEIERAIAAGAKVIGIN 187 (695)
T ss_pred HHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhCCCCEEEEe
Confidence 122366899988776666653 578889999999887 5589999999999999998655
No 69
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.92 E-value=0.36 Score=36.56 Aligned_cols=145 Identities=14% Similarity=0.190 Sum_probs=85.2
Q ss_pred CCcCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEeeCHHHHHHHHhhc-cCCeEEEEEE
Q 028497 38 DQVITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAKSDNLVRDIMRLS-SNVTAGYIIM 116 (208)
Q Consensus 38 ~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf~~~~l~~l~~~~-p~~~~~~l~~ 116 (208)
.-.+-+|.++.+.++..+..+++.+-.-.- ...+ +.-++.++++.-.+ =|+|-....+++.++.. .-++.-++..
T Consensus 27 ~g~I~~l~~~v~~~~~~gK~vfVHiDli~G-l~~D--~~~i~~L~~~~~~d-GIISTk~~~i~~Ak~~gl~tIqRiFliD 102 (175)
T PF04309_consen 27 TGDIGNLKDIVKRLKAAGKKVFVHIDLIEG-LSRD--EAGIEYLKEYGKPD-GIISTKSNLIKRAKKLGLLTIQRIFLID 102 (175)
T ss_dssp SEECCCHHHHHHHHHHTT-EEEEECCGEET-B-SS--HHHHHHHHHTT--S-EEEESSHHHHHHHHHTT-EEEEEEE-SS
T ss_pred cCcHHHHHHHHHHHHHcCCEEEEEehhcCC-CCCC--HHHHHHHHHcCCCc-EEEeCCHHHHHHHHHcCCEEEEEeeeec
Confidence 357899999999998766555555443210 1011 34566777755222 46778888888888752 2333333332
Q ss_pred ecCCCchhhhHhhhhcCceEeecccccCHHHHHHHH-hCCCeEEEee-CCCHHHHHHHHhCCCCEEEcCChHHH
Q 028497 117 VDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFH-GRNKRVFAWT-VDDEDSMRKMLHERVDAVVTSNPILF 188 (208)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~v~~wt-v~~~~~~~~~~~~gvd~i~TD~P~~~ 188 (208)
+.-.... ....+..++|++.+--. +-+..++.++ ..+.++.+=+ +.+++++..+++.|+.+|.|-+++++
T Consensus 103 S~al~~~-~~~i~~~~PD~vEilPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 103 SSALETG-IKQIEQSKPDAVEILPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp HHHHHHH-HHHHHHHT-SEEEEESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred HHHHHHH-HHHHhhcCCCEEEEchH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 2100000 12235588998876555 4467777655 4568887765 68999999999999999999988764
No 70
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=92.35 E-value=2.9 Score=32.57 Aligned_cols=103 Identities=9% Similarity=0.049 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHhcCCcceEE-E-eeC-HHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHH
Q 028497 72 GLAKDILSVIERTKCYNCLV-W-AKS-DNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLV 148 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii-~-Sf~-~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 148 (208)
+....+.+.+-+-|+.-.=| + |-. .++++.+++.+|++-+|.-.-.++.+ -+.+...|++|+. .+.++++++
T Consensus 25 e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q---~~~a~~aGa~fiV--sP~~~~ev~ 99 (211)
T COG0800 25 EEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQ---ARQAIAAGAQFIV--SPGLNPEVA 99 (211)
T ss_pred HHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHH---HHHHHHcCCCEEE--CCCCCHHHH
Confidence 34445666666767643323 2 222 36788888888977766332222211 1222447888753 455889999
Q ss_pred HHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEE
Q 028497 149 RTFHGRNKRVFAWTVDDEDSMRKMLHERVDAV 180 (208)
Q Consensus 149 ~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i 180 (208)
+.++++|+++.. ++.++.++..++++|.+.+
T Consensus 100 ~~a~~~~ip~~P-G~~TptEi~~Ale~G~~~l 130 (211)
T COG0800 100 KAANRYGIPYIP-GVATPTEIMAALELGASAL 130 (211)
T ss_pred HHHHhCCCcccC-CCCCHHHHHHHHHcChhhe
Confidence 999999998766 4468899999999998865
No 71
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=91.89 E-value=4.3 Score=30.57 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=89.0
Q ss_pred CcCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEeeCHHHHHHHHhh-ccCCeEEEEEEe
Q 028497 39 QVITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAKSDNLVRDIMRL-SSNVTAGYIIMV 117 (208)
Q Consensus 39 ~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf~~~~l~~l~~~-~p~~~~~~l~~~ 117 (208)
-.+..|.+....+++++..+++.+---+.-..+. ...+.+.+..- .-=|+|-....+...+++ .+-++..++..+
T Consensus 32 ~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e---~~i~fi~~~~~-pdGIISTk~~~i~~Akk~~~~aIqR~FilDS 107 (181)
T COG1954 32 GHILNIKEIVKKLKNRGKTVFIHVDLVEGLSNDE---VAIEFIKEVIK-PDGIISTKSNVIKKAKKLGILAIQRLFILDS 107 (181)
T ss_pred chhhhHHHHHHHHHhCCcEEEEEeHHhcccCCch---HHHHHHHHhcc-CCeeEEccHHHHHHHHHcCCceeeeeeeecH
Confidence 4689999999999987666666654322100011 12333333211 122556666666777664 455666666643
Q ss_pred cCCCchhhhHhhhhcCceEeecccccCHHHHHHH-HhCCCeEEEee-CCCHHHHHHHHhCCCCEEEcCChHHH
Q 028497 118 DPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTF-HGRNKRVFAWT-VDDEDSMRKMLHERVDAVVTSNPILF 188 (208)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~g~~v~~wt-v~~~~~~~~~~~~gvd~i~TD~P~~~ 188 (208)
.-.... .+.....++|++.+--. +-|..++.+ .+-+.++..-+ +++++++..+++.|+-++.|-+-..+
T Consensus 108 ~Al~~~-~~~i~~~~pD~iEvLPG-v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~~~lW 178 (181)
T COG1954 108 IALEKG-IKQIEKSEPDFIEVLPG-VMPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSNTKLW 178 (181)
T ss_pred HHHHHH-HHHHHHcCCCEEEEcCc-ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecchhhc
Confidence 211101 12234478898876555 557777765 46778888776 68999999999999999998765443
No 72
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.79 E-value=4.7 Score=30.81 Aligned_cols=129 Identities=9% Similarity=0.026 Sum_probs=80.4
Q ss_pred HHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEee--C-HHHHHHHHhhccCCeEEEEEEecCCCc
Q 028497 46 DALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAK--S-DNLVRDIMRLSSNVTAGYIIMVDPSTG 122 (208)
Q Consensus 46 evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf--~-~~~l~~l~~~~p~~~~~~l~~~~~~~~ 122 (208)
|+++.+... ++.--+...+. .....+++.+-+.|..-.-+-.. + .+.++.+++..|.+..|.-.-...
T Consensus 4 ~~~~~l~~~--~~~~v~r~~~~----~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~--- 74 (187)
T PRK07455 4 DWLAQLQQH--RAIAVIRAPDL----ELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTL--- 74 (187)
T ss_pred HHHHHHHhC--CEEEEEEcCCH----HHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcH---
Confidence 566666554 34444555431 23333555555656532223222 2 356778888888776664332211
Q ss_pred hhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHH
Q 028497 123 FRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPIL 187 (208)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~ 187 (208)
..-+.+...|+++++..+ .+++.++.++.+++....= +++..++.++.+.|+|.|-. +|..
T Consensus 75 d~~~~A~~~gAdgv~~p~--~~~~~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~-Fpt~ 135 (187)
T PRK07455 75 EDLEEAIAAGAQFCFTPH--VDPELIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKV-FPVQ 135 (187)
T ss_pred HHHHHHHHcCCCEEECCC--CCHHHHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEE-CcCC
Confidence 112444558888865443 6688888999999976554 79999999999999999977 7764
No 73
>PRK11059 regulatory protein CsrD; Provisional
Probab=91.29 E-value=7.1 Score=35.67 Aligned_cols=111 Identities=11% Similarity=0.097 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHhc-CC-cceEEEeeC-------HHH-HHHHHhhc-cCCeEEEEEEecCCC-chhhhHhhhhcCceEee
Q 028497 71 KGLAKDILSVIERT-KC-YNCLVWAKS-------DNL-VRDIMRLS-SNVTAGYIIMVDPST-GFRTNLLRIRKAGVVGV 138 (208)
Q Consensus 71 ~~~~~~v~~~l~~~-~~-~~~ii~Sf~-------~~~-l~~l~~~~-p~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 138 (208)
+.+...+.+.+.++ +. .+++++... .+. ...++.+. -++++++- +.+. +....+.+...++++-+
T Consensus 498 ~~f~~~l~~~l~~~~~~~~~~l~~Ei~E~~~~~~~~~~~~~l~~L~~~G~~iaid---dfG~g~~s~~~L~~l~~d~iKi 574 (640)
T PRK11059 498 RAFQRWLRDTLLQCPRSQRKRLIFELAEADVCQHISRLRPVLRMLRGLGCRLAVD---QAGLTVVSTSYIKELNVELIKL 574 (640)
T ss_pred hhHHHHHHHHHHhcCCCCcceEEEEEechhhhcCHHHHHHHHHHHHHCCCEEEEE---CCCCCcccHHHHHhCCCCEEEE
Confidence 36777788888887 54 344443331 122 22222221 24444432 2221 11123445566776655
Q ss_pred cccc------------cCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCC
Q 028497 139 YHPL------------IDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 139 ~~~~------------~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
...+ +=..++..+|+.|++|.+=+|.++++++.+.++|||+++-.+
T Consensus 575 d~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAegVEt~~~~~~l~~lGvd~~QG~~ 632 (640)
T PRK11059 575 HPSLVRNIHKRTENQLFVRSLVGACAGTETQVFATGVESREEWQTLQELGVSGGQGDF 632 (640)
T ss_pred CHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHhCCCeeecCc
Confidence 4321 114567889999999999999999999999999999988653
No 74
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=90.84 E-value=4.9 Score=31.46 Aligned_cols=95 Identities=19% Similarity=0.050 Sum_probs=61.0
Q ss_pred eCHHHHHHHHhhccCCeEEEEEEecCCCch-hhhHhhhhcCceEeecc--cccC-HHHHHHHHhCCCeEEEe--eCCCHH
Q 028497 94 KSDNLVRDIMRLSSNVTAGYIIMVDPSTGF-RTNLLRIRKAGVVGVYH--PLID-EKLVRTFHGRNKRVFAW--TVDDED 167 (208)
Q Consensus 94 f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~-~~~v~~~~~~g~~v~~w--tv~~~~ 167 (208)
+-.++++.+|+.+|+..+-.-.-. -..+. ..+++...|+|++.+.. +..| ...++.+|+.|+.+.+= .+.++.
T Consensus 42 eG~~aV~~lr~~~pd~~IvAD~Kt-~D~G~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~ 120 (217)
T COG0269 42 EGMRAVRALRELFPDKIIVADLKT-ADAGAIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPE 120 (217)
T ss_pred hhHHHHHHHHHHCCCCeEEeeeee-cchhHHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHH
Confidence 345788999999998887433321 11111 12344458899876533 2222 46788899999998875 455666
Q ss_pred HHHHHHh-CCCCEEEcCChHHHH
Q 028497 168 SMRKMLH-ERVDAVVTSNPILFQ 189 (208)
Q Consensus 168 ~~~~~~~-~gvd~i~TD~P~~~~ 189 (208)
+..+.++ +|+|.++--....++
T Consensus 121 ~~~~~l~~~gvd~~~~H~g~D~q 143 (217)
T COG0269 121 QRAKWLKELGVDQVILHRGRDAQ 143 (217)
T ss_pred HHHHHHHHhCCCEEEEEecccHh
Confidence 6665555 999999987655544
No 75
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=90.69 E-value=2.8 Score=34.72 Aligned_cols=104 Identities=16% Similarity=0.195 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCcceE-EEeeCHH----HHHHHHhhccCCeEEEEEEe-cCCCchhhhHhhhhcCceEeecccccCHHHHH
Q 028497 76 DILSVIERTKCYNCL-VWAKSDN----LVRDIMRLSSNVTAGYIIMV-DPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVR 149 (208)
Q Consensus 76 ~v~~~l~~~~~~~~i-i~Sf~~~----~l~~l~~~~p~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 149 (208)
.++..+.+.|.--.+ ....+++ .++.++++ .+.|.|..... .|.....-++.-..+++++..... ...++++
T Consensus 26 ~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~-t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g-~p~~~i~ 103 (307)
T TIGR03151 26 SLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKEL-TDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAG-NPGKYIP 103 (307)
T ss_pred HHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHh-cCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCC-CcHHHHH
Confidence 355556666532222 1122333 35556553 34566655432 222111112222367787765433 2346899
Q ss_pred HHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 150 TFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 150 ~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
++|..|++|+. .+.+.+..+++.+.|+|+|+.
T Consensus 104 ~lk~~g~~v~~-~v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 104 RLKENGVKVIP-VVASVALAKRMEKAGADAVIA 135 (307)
T ss_pred HHHHcCCEEEE-EcCCHHHHHHHHHcCCCEEEE
Confidence 99999998874 778888999999999999985
No 76
>PRK10060 RNase II stability modulator; Provisional
Probab=90.64 E-value=10 Score=34.91 Aligned_cols=132 Identities=11% Similarity=0.047 Sum_probs=74.4
Q ss_pred eEEEEeecCCCCCchhHHHHHHHHHHhcCCc-ceEEEee-------CHH-HHHHHHhhc-cCCeEEEEEEecCCCc-hhh
Q 028497 57 KVILDAKVGPPSYEKGLAKDILSVIERTKCY-NCLVWAK-------SDN-LVRDIMRLS-SNVTAGYIIMVDPSTG-FRT 125 (208)
Q Consensus 57 ~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~-~~ii~Sf-------~~~-~l~~l~~~~-p~~~~~~l~~~~~~~~-~~~ 125 (208)
.+.|-+-...... +.+...+.+++++++.. +++++.. +.. +...++++. -++++++- +.+.+ +.-
T Consensus 494 ~i~vNls~~~l~~-~~~~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialD---dfGtg~ssl 569 (663)
T PRK10060 494 RVAVNVSARQLAD-QTIFTALKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFSQLGAQVHLD---DFGTGYSSL 569 (663)
T ss_pred EEEEEcCHHHhCC-CcHHHHHHHHHHHHCcCcceEEEEECCchhhcCHHHHHHHHHHHHHCCCEEEEE---CCCCchhhH
Confidence 3444444332211 36888899999998863 3333222 222 222232221 24444322 22221 111
Q ss_pred hHhhhhcCceEeecccc------------cCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC---ChHHHHH
Q 028497 126 NLLRIRKAGVVGVYHPL------------IDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS---NPILFQR 190 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD---~P~~~~~ 190 (208)
...+...++++-+...+ +-..++..+|..|++|.+=+|.+++++..+.++|+|.++-. .|....+
T Consensus 570 ~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~ 649 (663)
T PRK10060 570 SQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVA 649 (663)
T ss_pred HHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEecCCCHHHHHHHHHcCCCEEecCccCCCCCHHH
Confidence 22233455655443211 12345778899999999999999999999999999988766 4544444
Q ss_pred HH
Q 028497 191 VM 192 (208)
Q Consensus 191 ~~ 192 (208)
+.
T Consensus 650 ~~ 651 (663)
T PRK10060 650 FE 651 (663)
T ss_pred HH
Confidence 43
No 77
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=90.05 E-value=5.4 Score=31.04 Aligned_cols=155 Identities=16% Similarity=0.085 Sum_probs=87.0
Q ss_pred CCcCCCHHHHHHHHhcCCceEEEEeecCCCC---CchhHHHHHHHHHHhcCCcceE-E-Eee--CHH-HHHHHHhh--cc
Q 028497 38 DQVITTIEDALTLVSNSVRKVILDAKVGPPS---YEKGLAKDILSVIERTKCYNCL-V-WAK--SDN-LVRDIMRL--SS 107 (208)
Q Consensus 38 ~~~iptL~evL~~~~~~~~~l~lEiK~~~~~---~~~~~~~~v~~~l~~~~~~~~i-i-~Sf--~~~-~l~~l~~~--~p 107 (208)
+-++-+.+++-+.-+.-++++.==+|..-++ +-+.+.+.+.++. +.|. ..+ + -.+ .+. .+..+-+. +|
T Consensus 49 giR~~gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~-~~Ga-~IIA~DaT~R~RP~~~~~~~i~~~k~~ 126 (229)
T COG3010 49 GIRIEGVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALA-EAGA-DIIAFDATDRPRPDGDLEELIARIKYP 126 (229)
T ss_pred eEeecchhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHH-HCCC-cEEEeecccCCCCcchHHHHHHHhhcC
Confidence 4556677777665444445565556754322 2234555555444 3343 221 1 111 112 33333332 34
Q ss_pred CCeEEEEEEecCCCchhhhHhhhhcCceEee---ccc-------ccCHHHHHHHHhCCCeEEEee-CCCHHHHHHHHhCC
Q 028497 108 NVTAGYIIMVDPSTGFRTNLLRIRKAGVVGV---YHP-------LIDEKLVRTFHGRNKRVFAWT-VDDEDSMRKMLHER 176 (208)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~v~~~~~~g~~v~~wt-v~~~~~~~~~~~~g 176 (208)
+.-. +. +-+.....-.+...|.|+++. -|. --+-.+++.+.+.|..|..=+ +|+++.+++.+..|
T Consensus 127 ~~l~---MA-D~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~tP~~Ak~a~~~G 202 (229)
T COG3010 127 GQLA---MA-DCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNTPEQAKKAIEIG 202 (229)
T ss_pred CcEE---Ee-ccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCCHHHHHHHHHhC
Confidence 3333 22 221111112334578888763 111 113467999999999998865 79999999999999
Q ss_pred CCEEEcC----ChHHHHHHHHHHHhh
Q 028497 177 VDAVVTS----NPILFQRVMQDIRTQ 198 (208)
Q Consensus 177 vd~i~TD----~P~~~~~~~~~~~~~ 198 (208)
+++|+.- +|+.+.+.+.+..++
T Consensus 203 a~aVvVGsAITRp~~It~~F~~~ik~ 228 (229)
T COG3010 203 ADAVVVGSAITRPEEITQWFVDAIKS 228 (229)
T ss_pred CeEEEECcccCCHHHHHHHHHHHHhc
Confidence 9999876 788887776655443
No 78
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=89.83 E-value=10 Score=31.24 Aligned_cols=107 Identities=4% Similarity=-0.080 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCCcceEEEeeCHHHHHHHHhhccCCeEEE-EEEe-cCCCch-hhhHhhhhcCceEeecccccC------
Q 028497 74 AKDILSVIERTKCYNCLVWAKSDNLVRDIMRLSSNVTAGY-IIMV-DPSTGF-RTNLLRIRKAGVVGVYHPLID------ 144 (208)
Q Consensus 74 ~~~v~~~l~~~~~~~~ii~Sf~~~~l~~l~~~~p~~~~~~-l~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~------ 144 (208)
...+.+..++.|. ...+.|......+.+++..| -+.++ ++.. .+.... ..+.....+++.+.++.....
T Consensus 83 ~~~la~aa~~~g~-~~~~~~~~~~~~~~i~~~~~-~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~ 160 (299)
T cd02809 83 ELATARAAAAAGI-PFTLSTVSTTSLEEVAAAAP-GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLT 160 (299)
T ss_pred HHHHHHHHHHcCC-CEEecCCCcCCHHHHHHhcC-CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCC
Confidence 4566777777774 23344433334455555555 23332 2321 121100 011123467777665544332
Q ss_pred HHHHHHHHhC-CCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 145 EKLVRTFHGR-NKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 145 ~~~v~~~~~~-g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
.+.++.+++. +++|.+=++.+.++++.+.+.|+|+|+.
T Consensus 161 ~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v 199 (299)
T cd02809 161 WDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVV 199 (299)
T ss_pred HHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEE
Confidence 4778888876 8999988888999999999999999976
No 79
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=89.45 E-value=8.5 Score=29.89 Aligned_cols=124 Identities=16% Similarity=0.080 Sum_probs=75.6
Q ss_pred ceEEEEeecCCCCCc----hhHHHHHHHHHHhcCCcceEEE----e--eCHHHHHHHHhhccCCeEEEEEEecCCCchhh
Q 028497 56 RKVILDAKVGPPSYE----KGLAKDILSVIERTKCYNCLVW----A--KSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRT 125 (208)
Q Consensus 56 ~~l~lEiK~~~~~~~----~~~~~~v~~~l~~~~~~~~ii~----S--f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~ 125 (208)
+.+..|+|..++... ..-...+.+...+.|..-..+. . .+.+.++.+++. .++|+..--... ....-
T Consensus 11 ~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~-v~iPi~~~~~i~--~~~~v 87 (217)
T cd00331 11 LGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA-VSLPVLRKDFII--DPYQI 87 (217)
T ss_pred ceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh-cCCCEEECCeec--CHHHH
Confidence 689999998765321 1223456666667776432221 2 256777888775 466764211101 11011
Q ss_pred hHhhhhcCceEeecccccC----HHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 126 NLLRIRKAGVVGVYHPLID----EKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
+.....|++++.+....+. .++++.++..|+.+ ...+.+.++++++.+.|++.+...
T Consensus 88 ~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~-~v~v~~~~e~~~~~~~g~~~i~~t 148 (217)
T cd00331 88 YEARAAGADAVLLIVAALDDEQLKELYELARELGMEV-LVEVHDEEELERALALGAKIIGIN 148 (217)
T ss_pred HHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeE-EEEECCHHHHHHHHHcCCCEEEEe
Confidence 2334589998876554444 45566778899988 444468888999999999998544
No 80
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=89.40 E-value=4.3 Score=32.06 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=45.5
Q ss_pred hhcCceEeeccc-----ccCHHHHHHHHhC--CCeEEE-eeCCCHHHHHHHHhCCCCEEEcCC-----hHHHHHH
Q 028497 130 IRKAGVVGVYHP-----LIDEKLVRTFHGR--NKRVFA-WTVDDEDSMRKMLHERVDAVVTSN-----PILFQRV 191 (208)
Q Consensus 130 ~~~~~~~~~~~~-----~~~~~~v~~~~~~--g~~v~~-wtv~~~~~~~~~~~~gvd~i~TD~-----P~~~~~~ 191 (208)
..|..++..++. -.++++++.+++. ++++.+ .++++.++++.++++|+|+|++-. |+.+.+.
T Consensus 147 ~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~~~~ 221 (223)
T TIGR01768 147 MLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKALET 221 (223)
T ss_pred HcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHHHHh
Confidence 366666665543 3458889988764 677754 578999999999999999998863 5555543
No 81
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=89.03 E-value=8.6 Score=32.13 Aligned_cols=107 Identities=10% Similarity=0.121 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCCcceEEEeeCHH-HHHHHHhhccCCeEEEEEEecCCCch-hhhHhhhhcCceEeecccc--c--CHHHH
Q 028497 75 KDILSVIERTKCYNCLVWAKSDN-LVRDIMRLSSNVTAGYIIMVDPSTGF-RTNLLRIRKAGVVGVYHPL--I--DEKLV 148 (208)
Q Consensus 75 ~~v~~~l~~~~~~~~ii~Sf~~~-~l~~l~~~~p~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~--~~~~v 148 (208)
..+...+.+.|.--.+-.+.+.+ ....+++......++......+.... ...+.+ .|++++.+.... . ..+.+
T Consensus 48 ~~ma~ava~~GglGvi~~~~~~~~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~e-agv~~I~vd~~~G~~~~~~~~i 126 (325)
T cd00381 48 SEMAIAMARLGGIGVIHRNMSIEEQAEEVRKVKGRLLVGAAVGTREDDKERAEALVE-AGVDVIVIDSAHGHSVYVIEMI 126 (325)
T ss_pred HHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhccCceEEEecCCChhHHHHHHHHHh-cCCCEEEEECCCCCcHHHHHHH
Confidence 34555666666423333333333 33344444333344433322111100 011222 577776553321 1 24678
Q ss_pred HHHHhCC--CeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 149 RTFHGRN--KRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 149 ~~~~~~g--~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+.+++.+ +++.+.++.+.+.++.+.+.|+|+|..
T Consensus 127 ~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 127 KFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEE
Confidence 8888877 788888999999999999999999973
No 82
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=88.79 E-value=9.6 Score=29.67 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHhcCCcceEEEeeCHHHHHHHHhhccCCeEEEEEEecC---CC----ch-hhhHhhhhcCceEeecccc-
Q 028497 72 GLAKDILSVIERTKCYNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDP---ST----GF-RTNLLRIRKAGVVGVYHPL- 142 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~---~~----~~-~~~~~~~~~~~~~~~~~~~- 142 (208)
.....+.+...+.|.. .+.-.+++.++.+++. .++|+..++.... .. +. .-+.....|++++.+....
T Consensus 27 ~~i~~~a~~~~~~G~~--~~~~~~~~~~~~i~~~-~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~ 103 (219)
T cd04729 27 EIMAAMALAAVQGGAV--GIRANGVEDIRAIRAR-VDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDR 103 (219)
T ss_pred HHHHHHHHHHHHCCCe--EEEcCCHHHHHHHHHh-CCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 3444555555555642 2222456778888875 6788753332111 00 00 1122345788877664332
Q ss_pred ------cCHHHHHHHHhCC-CeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 143 ------IDEKLVRTFHGRN-KRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 143 ------~~~~~v~~~~~~g-~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
...++++.++++| +.+. ..+.+.+++..+.+.|+|.|.++
T Consensus 104 ~~p~~~~~~~~i~~~~~~g~~~ii-v~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 104 PRPDGETLAELIKRIHEEYNCLLM-ADISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred CCCCCcCHHHHHHHHHHHhCCeEE-EECCCHHHHHHHHHcCCCEEEcc
Confidence 3357888999998 6554 47788899999999999999764
No 83
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=88.04 E-value=9.7 Score=29.97 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=45.2
Q ss_pred hhcCceEeecc--cccCHHHHHHHHhC--CCeEEE-eeCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHH
Q 028497 130 IRKAGVVGVYH--PLIDEKLVRTFHGR--NKRVFA-WTVDDEDSMRKMLHERVDAVVTS-----NPILFQRV 191 (208)
Q Consensus 130 ~~~~~~~~~~~--~~~~~~~v~~~~~~--g~~v~~-wtv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~ 191 (208)
..|..++..++ ...++++++.+++. +.++.+ .++++.++++.+++.|+|+|+.. +|+.+.++
T Consensus 146 ~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~p~~~~~~ 217 (219)
T cd02812 146 YLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPNAALET 217 (219)
T ss_pred HcCCeEEEeCCCCCcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHH
Confidence 35555554443 24678899998875 677765 46899999999999999999876 36665554
No 84
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=87.81 E-value=11 Score=29.33 Aligned_cols=133 Identities=13% Similarity=0.134 Sum_probs=76.3
Q ss_pred CHHHHHHHHhcC-CceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEE-EeeCHHHHHHHHhhc-cCCeEEEEEEecC
Q 028497 43 TIEDALTLVSNS-VRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLV-WAKSDNLVRDIMRLS-SNVTAGYIIMVDP 119 (208)
Q Consensus 43 tL~evL~~~~~~-~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii-~Sf~~~~l~~l~~~~-p~~~~~~l~~~~~ 119 (208)
.+++++..+.+. ..++.+++-..+. ..+++....+.+-.+ +++| +-...+-++.++++. .+++++...-..+
T Consensus 38 ~~~~~~~~i~~~~~~~v~~qv~~~~~---e~~i~~a~~l~~~~~--~~~iKIP~T~~gl~ai~~L~~~gi~v~~T~V~s~ 112 (211)
T cd00956 38 DFEAVLKEICEIIDGPVSAQVVSTDA---EGMVAEARKLASLGG--NVVVKIPVTEDGLKAIKKLSEEGIKTNVTAIFSA 112 (211)
T ss_pred CHHHHHHHHHHhcCCCEEEEEEeCCH---HHHHHHHHHHHHhCC--CEEEEEcCcHhHHHHHHHHHHcCCceeeEEecCH
Confidence 344444443322 1267888865431 244444443333323 4555 555555555555542 3677765543322
Q ss_pred CCchhhhHhhhhcCceEeeccccc----------CHHHHHHHHhCCCeE--EEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 120 STGFRTNLLRIRKAGVVGVYHPLI----------DEKLVRTFHGRNKRV--FAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~g~~v--~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
.+ ...+-..|+++++++.+-+ -.++.+.++.+|++. .+=.+.++.++-.+...|+|.++--
T Consensus 113 ~Q---a~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~ 185 (211)
T cd00956 113 AQ---ALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLP 185 (211)
T ss_pred HH---HHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeC
Confidence 21 1223347889887765421 135677788888664 4446789999999999999998764
No 85
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=87.25 E-value=7.8 Score=30.71 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=53.3
Q ss_pred EeeCHHHHHHHHhhccCCeE-EEEEEecCCCchhhhHhhhhcCceEeeccccc--C-HHHHHHHHhCCCeEEE-eeCCC-
Q 028497 92 WAKSDNLVRDIMRLSSNVTA-GYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLI--D-EKLVRTFHGRNKRVFA-WTVDD- 165 (208)
Q Consensus 92 ~Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~v~~~~~~g~~v~~-wtv~~- 165 (208)
+||.+..++.+|+. +++++ .-|+-.+|..+. ..+.+ .|++.+.+++... . ...++.+|++|+++.+ ...++
T Consensus 44 ~tfg~~~i~~ir~~-t~~~~DvHLMv~~P~~~i-~~~~~-aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~ 120 (229)
T PRK09722 44 LTLSPFFVSQVKKL-ASKPLDVHLMVTDPQDYI-DQLAD-AGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP 120 (229)
T ss_pred cccCHHHHHHHHhc-CCCCeEEEEEecCHHHHH-HHHHH-cCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 56788899999884 44443 233434554322 33433 7999888877643 2 3678999999999754 44444
Q ss_pred HHHHHHHHhCCCCE
Q 028497 166 EDSMRKMLHERVDA 179 (208)
Q Consensus 166 ~~~~~~~~~~gvd~ 179 (208)
.+.+..++.. +|.
T Consensus 121 ~~~l~~~l~~-vD~ 133 (229)
T PRK09722 121 VESIKYYIHL-LDK 133 (229)
T ss_pred HHHHHHHHHh-cCE
Confidence 4566667654 554
No 86
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=86.62 E-value=7.9 Score=32.40 Aligned_cols=162 Identities=12% Similarity=0.052 Sum_probs=89.8
Q ss_pred cCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcc-eEEEeeCHHHHHHHHhhccCCeEEEEEEec
Q 028497 40 VITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYN-CLVWAKSDNLVRDIMRLSSNVTAGYIIMVD 118 (208)
Q Consensus 40 ~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~-~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~ 118 (208)
..-.|.|++..++.....+.+|+-+.-.... ..--.-++..++.|..- |+=.+|+-+.+..+.+. | +++.+..+.-
T Consensus 47 ~~~~~~ell~~Anklg~~vivDvnPsil~~l-~~S~~~l~~f~e~G~~glRlD~gfS~eei~~ms~~-~-lkieLN~S~i 123 (360)
T COG3589 47 YFHRFKELLKEANKLGLRVIVDVNPSILKEL-NISLDNLSRFQELGVDGLRLDYGFSGEEIAEMSKN-P-LKIELNASTI 123 (360)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEcCHHHHhhc-CCChHHHHHHHHhhhhheeecccCCHHHHHHHhcC-C-eEEEEchhhh
Confidence 3455778899998887889999876521100 00112345556666544 45588988888888763 4 7776665421
Q ss_pred CCCchhhhHh-------hhhcCceEee-cccccCHHH----HHHHHhCCCeEEEeeCCC---------------------
Q 028497 119 PSTGFRTNLL-------RIRKAGVVGV-YHPLIDEKL----VRTFHGRNKRVFAWTVDD--------------------- 165 (208)
Q Consensus 119 ~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~----v~~~~~~g~~v~~wtv~~--------------------- 165 (208)
. .. ..++. +..|++-+.+ .+.-++.+. -+.+|.+|+++.++..++
T Consensus 124 t-~~-l~~l~~~~an~~nl~~cHNyYPr~yTGLS~e~f~~kn~~fk~~~i~t~AFis~~~~~g~r~~~~~GlpTlE~hR~ 201 (360)
T COG3589 124 T-EL-LDSLLAYKANLENLEGCHNYYPRPYTGLSREHFKRKNEIFKEYNIKTAAFISSDGAEGPRGPLYEGLPTLEAHRY 201 (360)
T ss_pred H-HH-HHHHHHhccchhhhhhcccccCCcccCccHHHHHHHHHHHHhcCCceEEEEecCCcCCcccccccCccchHHhcC
Confidence 1 11 11221 1122211111 123345544 345789999998775322
Q ss_pred ---HHHHHHHHhCCCCEEEcCChHHH---HHHHHHHHhhhhhcCccc
Q 028497 166 ---EDSMRKMLHERVDAVVTSNPILF---QRVMQDIRTQCLEEGFSL 206 (208)
Q Consensus 166 ---~~~~~~~~~~gvd~i~TD~P~~~---~~~~~~~~~~~~~~~~~~ 206 (208)
..+++.+.+.|+|-|..-++..- .+.+++.-++|..++...
T Consensus 202 ~~p~~qak~l~~~giD~VlIgd~~~seeelr~~sq~~n~~~~~i~v~ 248 (360)
T COG3589 202 VEPFVQAKDLFKTGIDDVLIGDQFPSEEELRAVSQAFNRNITEIKVV 248 (360)
T ss_pred CCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHHHhcccceeEEE
Confidence 13678889999887665533222 234445556666665443
No 87
>PLN02591 tryptophan synthase
Probab=86.60 E-value=14 Score=29.78 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=31.1
Q ss_pred HHHHHHHHh-CCCeEEE-eeCCCHHHHHHHHhCCCCEEEcC
Q 028497 145 EKLVRTFHG-RNKRVFA-WTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 145 ~~~v~~~~~-~g~~v~~-wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
.++++.+++ -++++.+ ++++++++++++.+.|+||++.-
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 355777776 4777766 57899999999999999999863
No 88
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=86.59 E-value=1.6 Score=33.87 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=69.9
Q ss_pred ceEEEEeecCCCCCchhHHHHHHHHHHhcCC-cceEEEeeCHH-------HHHHHHhhc-cCCeEEEEEEecCCCchhhh
Q 028497 56 RKVILDAKVGPPSYEKGLAKDILSVIERTKC-YNCLVWAKSDN-------LVRDIMRLS-SNVTAGYIIMVDPSTGFRTN 126 (208)
Q Consensus 56 ~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~-~~~ii~Sf~~~-------~l~~l~~~~-p~~~~~~l~~~~~~~~~~~~ 126 (208)
..+.+.|-...... ..+.+.+..++ +++. ..++++..+.. ....++++. -++++++-- ....... ..
T Consensus 88 ~~l~v~i~~~~l~~-~~f~~~l~~~l-~~~~~~~~l~lei~e~~~~~~~~~~~~l~~l~~~G~~i~ld~-~g~~~~~-~~ 163 (236)
T PF00563_consen 88 LPLFVNISPESLLD-PEFLDWLSNLL-QYGLPPSRLVLEISENDLPNDAELLENLRRLRSLGFRIALDD-FGSGSSS-LE 163 (236)
T ss_dssp SEEEEEE-HHHHGS-CCHHHHHHHHH-HTTGGGGGEEEEEEGHHHHHHHHHHHHHHHHHHCT-EEEEEE-ETSTCGC-HH
T ss_pred ceEEEEeehhhhhc-ccccccccccc-cccccccceEEEEechHhhhhHHHHHHHHHHHhcCceeEeee-ccCCcch-hh
Confidence 45666664321111 25777788888 7775 34444433222 123343322 356665432 1111111 12
Q ss_pred HhhhhcCceEeeccccc----C-------HHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCC
Q 028497 127 LLRIRKAGVVGVYHPLI----D-------EKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 127 ~~~~~~~~~~~~~~~~~----~-------~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
......++++.+....+ + ..+++.+++.|+++.+-+|+++++.+.+.++|++.+.-++
T Consensus 164 ~l~~l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~l~~~G~~~~QG~~ 232 (236)
T PF00563_consen 164 YLASLPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAEGVESEEQLELLKELGVDYIQGYL 232 (236)
T ss_dssp HHHHHCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEECE-SHHHHHHHHHTTESEEESTT
T ss_pred hhhhcccccceeecccccccchhhHHHHHHHHHHHhhccccccceeecCCHHHHHHHHHcCCCEEEeCC
Confidence 23346667665543222 2 2357788999999999999999999999999999987653
No 89
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=86.45 E-value=8 Score=29.50 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=30.3
Q ss_pred eEEEeeCHHHHHHHHhhccC-CeEEEEEEecCCCc--hhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEE
Q 028497 89 CLVWAKSDNLVRDIMRLSSN-VTAGYIIMVDPSTG--FRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFA 160 (208)
Q Consensus 89 ~ii~Sf~~~~l~~l~~~~p~-~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~ 160 (208)
.+++++.+...+.+++..|+ +...++ |.+. ....+.+...++.+.+...-+.+.++..++++|+++..
T Consensus 53 illT~~T~tg~~~~~~~~~~~v~~~~~----P~D~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~L 123 (186)
T PF04413_consen 53 ILLTTTTPTGREMARKLLPDRVDVQYL----PLDFPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVL 123 (186)
T ss_dssp EEEEES-CCHHHHHHGG-GGG-SEEE-------SSHHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEE
T ss_pred EEEEecCCchHHHHHHhCCCCeEEEEe----CccCHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEE
Confidence 34455555555555665443 444432 2221 22455566788877777777889999999999999875
No 90
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=85.87 E-value=24 Score=31.01 Aligned_cols=103 Identities=10% Similarity=0.122 Sum_probs=64.4
Q ss_pred HHHHHHHHhhccCCeEEEEEEe--------cCCCchhh--hHhhhhcCceEeeccccc----CHHHHHHHHhCCCeEE--
Q 028497 96 DNLVRDIMRLSSNVTAGYIIMV--------DPSTGFRT--NLLRIRKAGVVGVYHPLI----DEKLVRTFHGRNKRVF-- 159 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~~--------~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~g~~v~-- 159 (208)
++.++.+++..|+.++..+... .|...... +.+...|.+.+.+....- -...++.++++|..+.
T Consensus 63 ~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 63 WERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred HHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEE
Confidence 4678888887788887644421 11110101 112346788776543321 2356888999998764
Q ss_pred -EeeCCC-------HHHHHHHHhCCCCEEEc-C-----ChHHHHHHHHHHHhh
Q 028497 160 -AWTVDD-------EDSMRKMLHERVDAVVT-S-----NPILFQRVMQDIRTQ 198 (208)
Q Consensus 160 -~wtv~~-------~~~~~~~~~~gvd~i~T-D-----~P~~~~~~~~~~~~~ 198 (208)
.+|... .+.++.+.++|+|.|.- | .|..+.++++..+..
T Consensus 143 i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~ 195 (448)
T PRK12331 143 ISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEA 195 (448)
T ss_pred EEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 355433 24567788999998753 4 799999988877644
No 91
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=85.75 E-value=3.1 Score=33.23 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=33.0
Q ss_pred HHHHHHHhC---CCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 146 KLVRTFHGR---NKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 146 ~~v~~~~~~---g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+.++.++.. |+.|..|+.+|....+++.++|++.|..
T Consensus 111 ~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmP 150 (248)
T cd04728 111 ETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMP 150 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC
Confidence 456666666 9999999999999999999999999987
No 92
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=85.53 E-value=17 Score=32.01 Aligned_cols=148 Identities=16% Similarity=0.193 Sum_probs=85.3
Q ss_pred cCHHHhhcccCCCcCCCHHHHHHHHhcCCceEEEEeecCCCCCc----hhHHHHHHHHHHhcCCc------ceEEEeeCH
Q 028497 27 LSMKEFAQKSHDQVITTIEDALTLVSNSVRKVILDAKVGPPSYE----KGLAKDILSVIERTKCY------NCLVWAKSD 96 (208)
Q Consensus 27 ~t~~eL~~~~~~~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~----~~~~~~v~~~l~~~~~~------~~ii~Sf~~ 96 (208)
.++++++.... .+...|..+|. .+ ...+.-|+|..++... ..-...+++.. +.|.. +.-++..+.
T Consensus 25 ~~~~~~~~~~~-~~~~~~~~al~--~~-~~~vIaEiKraSPs~G~i~~~~d~~~~a~~y-~~gA~aiSVlTe~~~F~Gs~ 99 (454)
T PRK09427 25 QPLASFQNEIQ-PSDRSFYDALK--GP-KTAFILECKKASPSKGLIRDDFDPAEIARVY-KHYASAISVLTDEKYFQGSF 99 (454)
T ss_pred CCHHHHHhhcC-cCCCCHHHHHh--cC-CCceEEEeecCCCCCCccCCCCCHHHHHHHH-HcCCeEEEEecCcCcCCCCH
Confidence 35555543221 11124555553 22 3589999998655311 11122334444 33421 111233366
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCc-hhhhHhhhhcCceEeecccccCH----HHHHHHHhCCCeEEEeeCCCHHHHHH
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTG-FRTNLLRIRKAGVVGVYHPLIDE----KLVRTFHGRNKRVFAWTVDDEDSMRK 171 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~g~~v~~wtv~~~~~~~~ 171 (208)
+.++.+++. -++|+ |.. ++-.. ..-.-++..|+|.+......+++ ++++.+++.|+.+.+ -|++.+++++
T Consensus 100 ~~l~~vr~~-v~~Pv--LrK-DFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lv-Evh~~~El~~ 174 (454)
T PRK09427 100 DFLPIVRAI-VTQPI--LCK-DFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLT-EVSNEEELER 174 (454)
T ss_pred HHHHHHHHh-CCCCE--Eec-cccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEE-EECCHHHHHH
Confidence 777777774 33555 222 21110 00122366899988766666664 578889999999877 5689999999
Q ss_pred HHhCCCCEEEcCC
Q 028497 172 MLHERVDAVVTSN 184 (208)
Q Consensus 172 ~~~~gvd~i~TD~ 184 (208)
+++.|++.|-.|+
T Consensus 175 al~~~a~iiGiNn 187 (454)
T PRK09427 175 AIALGAKVIGINN 187 (454)
T ss_pred HHhCCCCEEEEeC
Confidence 9999999988875
No 93
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=85.48 E-value=4.9 Score=31.28 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=41.8
Q ss_pred hhhcCceEeecc-----cccCHHHHHHHHhC-CCeEEE-eeCCCHHHHHHHHhCCCCEEEc
Q 028497 129 RIRKAGVVGVYH-----PLIDEKLVRTFHGR-NKRVFA-WTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 129 ~~~~~~~~~~~~-----~~~~~~~v~~~~~~-g~~v~~-wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+..|.+++.+.+ ...++++++.+++. ++++.+ .++++.++++.+++.|+|+|++
T Consensus 144 ~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 144 KYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred HHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 457888776654 23678899888765 677655 5789999999999999999985
No 94
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=85.39 E-value=29 Score=31.59 Aligned_cols=103 Identities=11% Similarity=0.173 Sum_probs=64.7
Q ss_pred HHHHHHHHhhccCCeEEEEEEe-c-------CCCchhh--hHhhhhcCceEeecccccC----HHHHHHHHhCCCeEEE-
Q 028497 96 DNLVRDIMRLSSNVTAGYIIMV-D-------PSTGFRT--NLLRIRKAGVVGVYHPLID----EKLVRTFHGRNKRVFA- 160 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~~-~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v~~- 160 (208)
++.++.+++..|+.++..+... + |...... +.+...|.+.+.+....-+ ...++.++++|+.+.+
T Consensus 58 ~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 58 WERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred HHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEE
Confidence 4678888887888888766432 1 1110001 1223467887766543322 3457788999998864
Q ss_pred --eeCC---CH----HHHHHHHhCCCCEEE-cC-----ChHHHHHHHHHHHhh
Q 028497 161 --WTVD---DE----DSMRKMLHERVDAVV-TS-----NPILFQRVMQDIRTQ 198 (208)
Q Consensus 161 --wtv~---~~----~~~~~~~~~gvd~i~-TD-----~P~~~~~~~~~~~~~ 198 (208)
++.. +. +.++.+.++|+|.|. .| .|..+.++++..+..
T Consensus 138 i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~ 190 (582)
T TIGR01108 138 ISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKR 190 (582)
T ss_pred EEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHh
Confidence 4442 22 345667789999874 44 899999999887654
No 95
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=85.37 E-value=15 Score=28.47 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhcCCcceEEEeeCH---HHHHHHHhhccC-CeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHH
Q 028497 72 GLAKDILSVIERTKCYNCLVWAKSD---NLVRDIMRLSSN-VTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKL 147 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf~~---~~l~~l~~~~p~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (208)
.....+++.+-+.|..-.-+...++ +.++.+++.+|. +.+|.-.-..+ ..-+.+...|++|+.. +..++++
T Consensus 22 ~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~---~~~~~a~~aGA~fivs--p~~~~~v 96 (206)
T PRK09140 22 DEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSP---EQVDRLADAGGRLIVT--PNTDPEV 96 (206)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCH---HHHHHHHHcCCCEEEC--CCCCHHH
Confidence 3444556666666763222322233 356777766663 56654332111 1123345588888654 4577899
Q ss_pred HHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCCh
Q 028497 148 VRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 148 v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P 185 (208)
++.++..|+.+.+= +.+++++..+.+.|+|.|.- +|
T Consensus 97 ~~~~~~~~~~~~~G-~~t~~E~~~A~~~Gad~vk~-Fp 132 (206)
T PRK09140 97 IRRAVALGMVVMPG-VATPTEAFAALRAGAQALKL-FP 132 (206)
T ss_pred HHHHHHCCCcEEcc-cCCHHHHHHHHHcCCCEEEE-CC
Confidence 99999999987665 67889999999999999975 55
No 96
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=84.91 E-value=3 Score=35.25 Aligned_cols=46 Identities=26% Similarity=0.401 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCeEEEee----CCC-----HHHHHHHHhCCCCEEEcCChHHHHH
Q 028497 145 EKLVRTFHGRNKRVFAWT----VDD-----EDSMRKMLHERVDAVVTSNPILFQR 190 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wt----v~~-----~~~~~~~~~~gvd~i~TD~P~~~~~ 190 (208)
.+.++.+|++|+++++=. .++ ...++.+.++|||+||-.+|..+.-
T Consensus 52 ~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l 106 (347)
T COG0826 52 AEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPGLIML 106 (347)
T ss_pred HHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 356889999999987642 222 2457778899999999999998763
No 97
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=84.63 E-value=9.1 Score=30.10 Aligned_cols=85 Identities=4% Similarity=0.015 Sum_probs=52.2
Q ss_pred EeeCHHHHHHHHhhccCCeE-EEEEEecCCCchhhhHhhhhcCceEeeccccc-C-HHHHHHHHhCCCeEEEe-eCCC-H
Q 028497 92 WAKSDNLVRDIMRLSSNVTA-GYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLI-D-EKLVRTFHGRNKRVFAW-TVDD-E 166 (208)
Q Consensus 92 ~Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~g~~v~~w-tv~~-~ 166 (208)
+||.+..++.+|+..+++++ .-|+-.+|..+. ..+ ...|++.+.++.... . .+.++++|++|+++.+- ...+ .
T Consensus 42 ~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i-~~~-~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~ 119 (220)
T PRK08883 42 LTFGAPICKALRDYGITAPIDVHLMVKPVDRII-PDF-AKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPL 119 (220)
T ss_pred cccCHHHHHHHHHhCCCCCEEEEeccCCHHHHH-HHH-HHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 57888899999985344443 123333453322 333 338999888876533 2 37789999999988654 3334 4
Q ss_pred HHHHHHHhCCCCE
Q 028497 167 DSMRKMLHERVDA 179 (208)
Q Consensus 167 ~~~~~~~~~gvd~ 179 (208)
+.++.++.. +|.
T Consensus 120 ~~i~~~l~~-~D~ 131 (220)
T PRK08883 120 HHLEYIMDK-VDL 131 (220)
T ss_pred HHHHHHHHh-CCe
Confidence 566666653 443
No 98
>PRK13561 putative diguanylate cyclase; Provisional
Probab=84.08 E-value=29 Score=31.63 Aligned_cols=122 Identities=16% Similarity=0.154 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHhcCCc-ceEEEee-------CHH-HHHHHHhhc-cCCeEEEEEEecCCCc-h-hhhHhh--hhcCceE
Q 028497 71 KGLAKDILSVIERTKCY-NCLVWAK-------SDN-LVRDIMRLS-SNVTAGYIIMVDPSTG-F-RTNLLR--IRKAGVV 136 (208)
Q Consensus 71 ~~~~~~v~~~l~~~~~~-~~ii~Sf-------~~~-~l~~l~~~~-p~~~~~~l~~~~~~~~-~-~~~~~~--~~~~~~~ 136 (208)
+.+.+.+.+++++++.. +++++-. +.+ +...++++. -++++++- +.+.+ . ...+.+ ...++++
T Consensus 500 ~~f~~~l~~~l~~~~~~~~~l~lEi~E~~~~~~~~~~~~~~~~l~~~G~~i~ld---dfG~g~ssl~~L~~l~~l~~d~l 576 (651)
T PRK13561 500 PNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALD---DFGMGYAGLRQLQHMKSLPIDVL 576 (651)
T ss_pred chHHHHHHHHHHHcCCChHHEEEEEchhhhhcCHHHHHHHHHHHHHCCCEEEEE---CCCCCcccHHHHhhcCCCCCcEE
Confidence 37888899999999863 3333322 222 223333332 34555432 22211 1 111211 1345655
Q ss_pred eeccccc-----C----HHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC---ChHHHHHHHHHH
Q 028497 137 GVYHPLI-----D----EKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS---NPILFQRVMQDI 195 (208)
Q Consensus 137 ~~~~~~~-----~----~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD---~P~~~~~~~~~~ 195 (208)
-+...++ + ..+++.+|..|++|.+=+|.++++++.+.++|+|+++-. .|..+.++.+.+
T Consensus 577 KiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAegVE~~~~~~~l~~~g~d~~QG~~~~~P~~~~~~~~~~ 647 (651)
T PRK13561 577 KIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAEGVETEAQRDWLLKAGVGIAQGFLFARALPIEIFEERY 647 (651)
T ss_pred EECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEecCCCHHHHHHHHhcCCCEEeCCcccCCCCHHHHHHHh
Confidence 4432211 1 345778999999999999999999999999999988876 466666655433
No 99
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=84.08 E-value=18 Score=28.15 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHhcCCcceEEEeeCHHHHHHHHhhccCCeEEEEEEec----CC-Cc-hhh--hHhhhhcCceEeecccc-
Q 028497 72 GLAKDILSVIERTKCYNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVD----PS-TG-FRT--NLLRIRKAGVVGVYHPL- 142 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~----~~-~~-~~~--~~~~~~~~~~~~~~~~~- 142 (208)
.....+++.+.+.|..-..+ .+.+.++.+++. .++|+......+ +. .+ ... ..+...|++++.+....
T Consensus 23 ~~~~~~a~a~~~~G~~~~~~--~~~~~i~~i~~~-~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~ 99 (221)
T PRK01130 23 EIMAAMALAAVQGGAVGIRA--NGVEDIKAIRAV-VDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLR 99 (221)
T ss_pred HHHHHHHHHHHHCCCeEEEc--CCHHHHHHHHHh-CCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 44556666666766522222 247788888875 567764332211 10 00 111 22345788977654332
Q ss_pred ------cCHHHHHHHHh-CCCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 143 ------IDEKLVRTFHG-RNKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 143 ------~~~~~v~~~~~-~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
...++++.+++ .|+.+.+ .+.+.+++..+.+.|+|.|.++
T Consensus 100 ~~p~~~~~~~~i~~~~~~~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 100 PRPDGETLAELVKRIKEYPGQLLMA-DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred CCCCCCCHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEEcC
Confidence 22578999999 8888776 4568888999999999999764
No 100
>PRK00208 thiG thiazole synthase; Reviewed
Probab=84.01 E-value=4.1 Score=32.58 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=33.1
Q ss_pred HHHHHHHhC---CCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 146 KLVRTFHGR---NKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 146 ~~v~~~~~~---g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+.++.++.. |+.|..|+.+|....+++.++|++.|..
T Consensus 111 ~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmP 150 (250)
T PRK00208 111 ETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMP 150 (250)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCC
Confidence 556776666 9999999999999999999999999987
No 101
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=83.72 E-value=2.3 Score=33.28 Aligned_cols=159 Identities=14% Similarity=0.145 Sum_probs=89.9
Q ss_pred ccccCHHHhhcccCCCcCCCHHHHHHHHhcC--CceEEEEeecCCCCCc----hhHHHHHHHHHHhcCCcceE-EE----
Q 028497 24 VGHLSMKEFAQKSHDQVITTIEDALTLVSNS--VRKVILDAKVGPPSYE----KGLAKDILSVIERTKCYNCL-VW---- 92 (208)
Q Consensus 24 i~~~t~~eL~~~~~~~~iptL~evL~~~~~~--~~~l~lEiK~~~~~~~----~~~~~~v~~~l~~~~~~~~i-i~---- 92 (208)
.--+|+.+|+......-.|.+.++...++.. ...+.-|+|...+... ..-.........+-|. .++ +.
T Consensus 37 ~Pg~t~~dLq~~ld~~~aPP~~dF~~~Lr~shk~p~liAEVKrASPSkG~ik~d~~~ae~A~~Yak~GA-s~iSVLTe~k 115 (289)
T KOG4201|consen 37 KPGFTLQDLQKALDLGLAPPLQDFYGALRSSHKRPGLIAEVKRASPSKGIIKLDANAAEQALAYAKGGA-SCISVLTEPK 115 (289)
T ss_pred CCCCcHHHHHHHHhccCCCchHHHHHHHHHhcccchHHHHHhhcCCCCCccccccCHHHHHHHHHhcCc-eeeeeecCch
Confidence 4557788887766655678899988887653 3478889997654311 0111112222334343 221 11
Q ss_pred --eeCHHHHHHHHhhc-cCCe-EEEEEEecCCCchhhh-HhhhhcCceEeecccccC----HHHHHHHHhCCCeEEEeeC
Q 028497 93 --AKSDNLVRDIMRLS-SNVT-AGYIIMVDPSTGFRTN-LLRIRKAGVVGVYHPLID----EKLVRTFHGRNKRVFAWTV 163 (208)
Q Consensus 93 --Sf~~~~l~~l~~~~-p~~~-~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v~~wtv 163 (208)
-.+.+.+..+|+.. -.++ -+++... +....|+- .++..|+|.+......++ ..+...+++.|+.-.| -|
T Consensus 116 ~FkGsledL~~irk~~~~k~p~~~lL~Ke-Fivd~~QI~~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LV-EV 193 (289)
T KOG4201|consen 116 WFKGSLEDLVAIRKIAGVKCPPKCLLRKE-FIVDPYQIYEARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLV-EV 193 (289)
T ss_pred hhcccHHHHHHHHHHhcCcCChHhHhHHH-HccCHHHHHHHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCccee-ee
Confidence 12445566666431 1111 1222211 10111122 236688887655444443 4566778888887655 57
Q ss_pred CCHHHHHHHHhCCCCEEEcCCh
Q 028497 164 DDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 164 ~~~~~~~~~~~~gvd~i~TD~P 185 (208)
|++++|++.+..|+..|=.|+-
T Consensus 194 n~~eEm~raleiGakvvGvNNR 215 (289)
T KOG4201|consen 194 NDEEEMQRALEIGAKVVGVNNR 215 (289)
T ss_pred ccHHHHHHHHHhCcEEEeecCC
Confidence 9999999999999998877753
No 102
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=83.09 E-value=7.9 Score=29.76 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=53.1
Q ss_pred HHHHHHHHhhccC--CeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHh-CCCeEE-EeeCCCHHHH--
Q 028497 96 DNLVRDIMRLSSN--VTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHG-RNKRVF-AWTVDDEDSM-- 169 (208)
Q Consensus 96 ~~~l~~l~~~~p~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~v~-~wtv~~~~~~-- 169 (208)
.+..+.+++..+. ..++++....+. ...+++...+++++.++... +++.++.+++ .|.+++ +-.+.+....
T Consensus 37 ~~~a~~l~~~~~~~~~~V~v~vn~~~~--~i~~ia~~~~~d~Vqlhg~e-~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 37 PEQAREIVAALPPFVKRVGVFVNEDLE--EILEIAEELGLDVVQLHGDE-SPEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeCCCHH--HHHHHHHhcCCCEEEECCCC-CHHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 4556777777776 566666543211 11245566788988887653 5667777775 355543 2344444333
Q ss_pred HHHHhCCCCEEEcCChH
Q 028497 170 RKMLHERVDAVVTSNPI 186 (208)
Q Consensus 170 ~~~~~~gvd~i~TD~P~ 186 (208)
.+....|+|+++.|-+.
T Consensus 114 ~~~~~~~aD~il~dt~~ 130 (203)
T cd00405 114 AAAYAGEVDAILLDSKS 130 (203)
T ss_pred hhhccccCCEEEEcCCC
Confidence 34556799999988653
No 103
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=82.92 E-value=11 Score=29.67 Aligned_cols=92 Identities=9% Similarity=0.048 Sum_probs=56.4
Q ss_pred EeeCHHHHHHHHhhccCCeE-EEEEEecCCCchhhhHhhhhcCceEeecccc-cC-HHHHHHHHhCCCeEEEe-eCCC-H
Q 028497 92 WAKSDNLVRDIMRLSSNVTA-GYIIMVDPSTGFRTNLLRIRKAGVVGVYHPL-ID-EKLVRTFHGRNKRVFAW-TVDD-E 166 (208)
Q Consensus 92 ~Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~g~~v~~w-tv~~-~ 166 (208)
++|.+..++.+|+..+++++ .-|+-.+|..+. ..+.+ .|++.+.+++.. .. .+.++++|++|++..+= ...+ .
T Consensus 46 ~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i-~~~~~-~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~ 123 (223)
T PRK08745 46 LTIGPMVCQALRKHGITAPIDVHLMVEPVDRIV-PDFAD-AGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPV 123 (223)
T ss_pred cccCHHHHHHHHhhCCCCCEEEEeccCCHHHHH-HHHHH-hCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCH
Confidence 57888899999986455553 223333453322 33433 799988887653 22 47789999999987653 2333 5
Q ss_pred HHHHHHHhCCCCE--EEcCChH
Q 028497 167 DSMRKMLHERVDA--VVTSNPI 186 (208)
Q Consensus 167 ~~~~~~~~~gvd~--i~TD~P~ 186 (208)
+.++.++.. +|. |+|=+|.
T Consensus 124 ~~i~~~l~~-vD~VlvMtV~PG 144 (223)
T PRK08745 124 DILDWVLPE-LDLVLVMSVNPG 144 (223)
T ss_pred HHHHHHHhh-cCEEEEEEECCC
Confidence 567777764 553 4444444
No 104
>PRK08005 epimerase; Validated
Probab=82.09 E-value=13 Score=29.09 Aligned_cols=84 Identities=7% Similarity=0.035 Sum_probs=50.4
Q ss_pred EeeCHHHHHHHHhhccCCeE-EEEEEecCCCchhhhHhhhhcCceEeeccccc-C-HHHHHHHHhCCCeEEEe-eCC-CH
Q 028497 92 WAKSDNLVRDIMRLSSNVTA-GYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLI-D-EKLVRTFHGRNKRVFAW-TVD-DE 166 (208)
Q Consensus 92 ~Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~g~~v~~w-tv~-~~ 166 (208)
+||.+..++.+++. ++.++ .-|+-.+|..+. ..+.+ .|++.+.+++... . ...++++|++|+++.+= ... +.
T Consensus 43 ~tfG~~~i~~l~~~-t~~~~DvHLMv~~P~~~i-~~~~~-~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~ 119 (210)
T PRK08005 43 ITFGMKTIQAVAQQ-TRHPLSFHLMVSSPQRWL-PWLAA-IRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPL 119 (210)
T ss_pred cccCHHHHHHHHhc-CCCCeEEEeccCCHHHHH-HHHHH-hCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCH
Confidence 57788889999875 33332 223333453322 33433 7899888776532 2 36789999999987543 222 35
Q ss_pred HHHHHHHhCCCCE
Q 028497 167 DSMRKMLHERVDA 179 (208)
Q Consensus 167 ~~~~~~~~~gvd~ 179 (208)
+.++.++.. +|.
T Consensus 120 ~~i~~~l~~-vD~ 131 (210)
T PRK08005 120 LPYRYLALQ-LDA 131 (210)
T ss_pred HHHHHHHHh-cCE
Confidence 566666653 554
No 105
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=81.70 E-value=39 Score=30.84 Aligned_cols=135 Identities=12% Similarity=0.056 Sum_probs=76.4
Q ss_pred eEEEEeecCCCCCchhHHHHHHHHHHhcCCc-ceEEEee-------CH-HHHHHHHhhc-cCCeEEEEEEecCCCc-hhh
Q 028497 57 KVILDAKVGPPSYEKGLAKDILSVIERTKCY-NCLVWAK-------SD-NLVRDIMRLS-SNVTAGYIIMVDPSTG-FRT 125 (208)
Q Consensus 57 ~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~-~~ii~Sf-------~~-~~l~~l~~~~-p~~~~~~l~~~~~~~~-~~~ 125 (208)
.+.|.+-...... +.+...+.+++++++.. +++++.. +. .....++++. -++++++- +.+.+ ...
T Consensus 492 ~l~iNls~~~l~~-~~f~~~l~~~l~~~~~~~~~l~lEi~E~~~~~~~~~~~~~~~~l~~~G~~ialD---dfG~g~ss~ 567 (660)
T PRK11829 492 PLSVNISGLQVQN-KQFLPHLKTLISHYHIDPQQLLLEITETAQIQDLDEALRLLRELQGLGLLIALD---DFGIGYSSL 567 (660)
T ss_pred eEEEEeCHHHHCC-chHHHHHHHHHHHcCcChhhEEEEEcCchhhcCHHHHHHHHHHHHhCCCEEEEE---CCCCchhhH
Confidence 4555554332111 36777888899998863 3333222 22 2222233321 23444322 22211 112
Q ss_pred hHhhh---hcCceEeeccccc-----C----HHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC---ChHHHHH
Q 028497 126 NLLRI---RKAGVVGVYHPLI-----D----EKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS---NPILFQR 190 (208)
Q Consensus 126 ~~~~~---~~~~~~~~~~~~~-----~----~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD---~P~~~~~ 190 (208)
.+.+. ..++++-+...++ + ..+...+|..|++|.+=+|.++++++.+.++|+|+++-. .|....+
T Consensus 568 ~~L~~~~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~viaegVEt~~~~~~l~~~g~d~~QGy~~~~P~~~~~ 647 (660)
T PRK11829 568 RYLNHLKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAE 647 (660)
T ss_pred HHHhccCCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHcCCCEEecCcccCCCCHHH
Confidence 23344 5566665432211 1 233556788999999999999999999999999988766 5777666
Q ss_pred HHHHH
Q 028497 191 VMQDI 195 (208)
Q Consensus 191 ~~~~~ 195 (208)
+...+
T Consensus 648 ~~~~~ 652 (660)
T PRK11829 648 FEAQY 652 (660)
T ss_pred HHHHh
Confidence 65543
No 106
>PRK09776 putative diguanylate cyclase; Provisional
Probab=81.57 E-value=46 Score=32.21 Aligned_cols=133 Identities=14% Similarity=0.063 Sum_probs=76.7
Q ss_pred eEEEEeecCCCCCchhHHHHHHHHHHhcCCc-ce-EE-Eee-----CHH-HHHHHHhhc-cCCeEEEEEEecCCCc-hhh
Q 028497 57 KVILDAKVGPPSYEKGLAKDILSVIERTKCY-NC-LV-WAK-----SDN-LVRDIMRLS-SNVTAGYIIMVDPSTG-FRT 125 (208)
Q Consensus 57 ~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~-~~-ii-~Sf-----~~~-~l~~l~~~~-p~~~~~~l~~~~~~~~-~~~ 125 (208)
.+.|.+-...... +.+...+.+.+++++.. ++ ++ ++- +.. ....++++. -++++++- +.+.+ ...
T Consensus 927 ~~~iNis~~~l~~-~~~~~~~~~~l~~~~~~~~~l~~Ei~e~~~~~~~~~~~~~~~~l~~~G~~~~ld---dfg~g~~~~ 1002 (1092)
T PRK09776 927 SIALPLSVAGLSS-PTLLPFLLEQLENSPLPPRLLHLEITETALLNHAESASRLVQKLRLAGCRVVLS---DFGRGLSSF 1002 (1092)
T ss_pred EEEEEcCHHHhCC-chHHHHHHHHHHhcCCCHHHeEEEEecHHhhcCHHHHHHHHHHHHHCCcEEEEc---CCCCCchHH
Confidence 4555544432222 36777888888888863 33 33 221 221 222233321 24444322 22221 112
Q ss_pred hHhhhhcCceEeeccccc------------CHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC---ChHHHHH
Q 028497 126 NLLRIRKAGVVGVYHPLI------------DEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS---NPILFQR 190 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~------------~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD---~P~~~~~ 190 (208)
...+...++++-+...++ -..+++.+|..|+++.+=+|.++++++.+.++|+|.++-. .|..+.+
T Consensus 1003 ~~l~~~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~iaegVEt~~~~~~l~~~g~~~~QG~~~~~P~~~~~ 1082 (1092)
T PRK09776 1003 NYLKAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKTIAGPVELPLVLDTLSGIGVDLAYGYAIARPQPLDL 1082 (1092)
T ss_pred HHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcEEecccCCHHHHHHHHHcCCCEEeccccCCCCcHHH
Confidence 223335666665543221 1345677899999999999999999999999999998877 5766665
Q ss_pred HHH
Q 028497 191 VMQ 193 (208)
Q Consensus 191 ~~~ 193 (208)
++.
T Consensus 1083 ~~~ 1085 (1092)
T PRK09776 1083 LLN 1085 (1092)
T ss_pred HHh
Confidence 554
No 107
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=81.50 E-value=20 Score=31.40 Aligned_cols=106 Identities=12% Similarity=0.037 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCcceEEEee--C----HHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeec-cc---cc
Q 028497 74 AKDILSVIERTKCYNCLVWAK--S----DNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVY-HP---LI 143 (208)
Q Consensus 74 ~~~v~~~l~~~~~~~~ii~Sf--~----~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~ 143 (208)
.+.+..++ +.|..-..+-+. + .+.++++++.+|+++++. . +-.+......+...|++++.+- .+ ..
T Consensus 226 ~~r~~~L~-~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~--G-~v~t~~~a~~l~~aGad~i~vg~g~G~~~~ 301 (450)
T TIGR01302 226 KERAEALV-KAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA--G-NVATAEQAKALIDAGADGLRVGIGPGSICT 301 (450)
T ss_pred HHHHHHHH-HhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE--E-eCCCHHHHHHHHHhCCCEEEECCCCCcCCc
Confidence 34444444 456544444332 1 246778888788888754 1 1111110112233788876321 00 01
Q ss_pred C--------------HHHHHHHHhCCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC
Q 028497 144 D--------------EKLVRTFHGRNKRVFAW-TVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 144 ~--------------~~~v~~~~~~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD 183 (208)
+ .+..+.+++.|+++++= ++.+..++.+++.+|++.++--
T Consensus 302 t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 302 TRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 1 23445567788887775 4899999999999999998754
No 108
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=81.42 E-value=28 Score=30.82 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=46.9
Q ss_pred cCHHHHHHHHhCCCeEEEee------CC-------CHHHHHHHHhCCCCEEEc-------CChHHHHHHHHHHHhhhh
Q 028497 143 IDEKLVRTFHGRNKRVFAWT------VD-------DEDSMRKMLHERVDAVVT-------SNPILFQRVMQDIRTQCL 200 (208)
Q Consensus 143 ~~~~~v~~~~~~g~~v~~wt------v~-------~~~~~~~~~~~gvd~i~T-------D~P~~~~~~~~~~~~~~~ 200 (208)
....++..++.+|+++.+-| ++ +..++..++..|+|+|+- .||.++.+.+++.....+
T Consensus 258 ~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E 335 (473)
T TIGR01064 258 AQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAE 335 (473)
T ss_pred HHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHH
Confidence 34567888999999999888 24 567899999999999876 699999999987654444
No 109
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=81.19 E-value=23 Score=27.31 Aligned_cols=125 Identities=11% Similarity=0.097 Sum_probs=71.6
Q ss_pred eEEEEeecCCCCCchhHHHHHHHHHHhcCCc--ceEE-Eee-----CHH-HHHHHHhh-ccCCeEEEEEEecCCCchhhh
Q 028497 57 KVILDAKVGPPSYEKGLAKDILSVIERTKCY--NCLV-WAK-----SDN-LVRDIMRL-SSNVTAGYIIMVDPSTGFRTN 126 (208)
Q Consensus 57 ~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~--~~ii-~Sf-----~~~-~l~~l~~~-~p~~~~~~l~~~~~~~~~~~~ 126 (208)
.+.|.+-..... .......+.+.+++++.. +.++ .+- +.. ....++++ ..++++++--. ... ....+
T Consensus 85 ~l~ini~~~~l~-~~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~~l~ld~~-g~~-~~~~~ 161 (240)
T cd01948 85 RLSVNLSARQLR-DPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGVRIALDDF-GTG-YSSLS 161 (240)
T ss_pred EEEEECCHHHhC-CcHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCCeEEEeCC-CCc-HhhHH
Confidence 455555443221 135677788888888864 2333 221 111 23333333 23566653211 111 11112
Q ss_pred HhhhhcCceEeecccc------------cCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCC
Q 028497 127 LLRIRKAGVVGVYHPL------------IDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 127 ~~~~~~~~~~~~~~~~------------~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
......++++-+...+ .-..++..++..|++|.+=.|++.+++..+.++|++++.-++
T Consensus 162 ~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~~~~~gi~~~QG~~ 231 (240)
T cd01948 162 YLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGVETEEQLELLRELGCDYVQGYL 231 (240)
T ss_pred HHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHcCCCeeeece
Confidence 3333556766543221 113457778899999999999999999999999999987664
No 110
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=81.18 E-value=5.4 Score=31.56 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=25.3
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcccCCCcCCCHHHHHHHHhc-------CCceEEEEeecC
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQKSHDQVITTIEDALTLVSN-------SVRKVILDAKVG 65 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~~~~~~iptL~evL~~~~~-------~~~~l~lEiK~~ 65 (208)
||++||+||.++. . -.+|+|++..+++ .++.|.||.-..
T Consensus 55 dgePvV~HG~tlt----s---------------------~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hcs 100 (229)
T cd08592 55 DGMPIIYHGHTLT----S---------------------KIKFMDVLKTIKEHAFVTSEYPVILSIENHCS 100 (229)
T ss_pred CCCEEEEeCCcCC----C---------------------CcCHHHHHHHHHHHhccCCCCCEEEEEecCCC
Confidence 7899999987653 1 1347777777764 345667775543
No 111
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=81.17 E-value=32 Score=28.94 Aligned_cols=101 Identities=11% Similarity=0.134 Sum_probs=63.0
Q ss_pred HHHHHHHHhhccCCeEEEEEEecCCCchhhhH--hhhhcCceEeecc--c--ccCHHHHHHHHhCCCeEEEeeC----CC
Q 028497 96 DNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNL--LRIRKAGVVGVYH--P--LIDEKLVRTFHGRNKRVFAWTV----DD 165 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~--~--~~~~~~v~~~~~~g~~v~~wtv----~~ 165 (208)
.+.++.+++..++.++..+.. |......++ +...|++.+.+.. + ......++.+++.|+.|.+... .+
T Consensus 65 ~e~i~~~~~~~~~~~~~~ll~--pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~ 142 (337)
T PRK08195 65 EEYIEAAAEVVKQAKIAALLL--PGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAP 142 (337)
T ss_pred HHHHHHHHHhCCCCEEEEEec--cCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCC
Confidence 456777766667777664442 322111233 2336777765432 1 1235678899999999887542 23
Q ss_pred H----HHHHHHHhCCCCEEE-cC-----ChHHHHHHHHHHHhh
Q 028497 166 E----DSMRKMLHERVDAVV-TS-----NPILFQRVMQDIRTQ 198 (208)
Q Consensus 166 ~----~~~~~~~~~gvd~i~-TD-----~P~~~~~~~~~~~~~ 198 (208)
+ +.++.+.+.|++.|. .| .|..+.++++..++.
T Consensus 143 ~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 143 PEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 3 345667788999865 56 899999998877643
No 112
>PLN02334 ribulose-phosphate 3-epimerase
Probab=80.90 E-value=14 Score=28.98 Aligned_cols=85 Identities=8% Similarity=0.133 Sum_probs=50.0
Q ss_pred eeCHHHHHHHHhhccCCeEEE-EEEecCCCchhhhHhhhhcCceEeeccc----ccCHHHHHHHHhCCCeEEEeeC-CC-
Q 028497 93 AKSDNLVRDIMRLSSNVTAGY-IIMVDPSTGFRTNLLRIRKAGVVGVYHP----LIDEKLVRTFHGRNKRVFAWTV-DD- 165 (208)
Q Consensus 93 Sf~~~~l~~l~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~g~~v~~wtv-~~- 165 (208)
+|.++.++.+++. ++.++.. ++-.+|..+ .+.+...|++++.++.. -.....++.+++.|+.+.+-+- ++
T Consensus 51 ~~g~~~~~~l~~~-~~~~~~vhlmv~~p~d~--~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t~ 127 (229)
T PLN02334 51 TIGPPVVKALRKH-TDAPLDCHLMVTNPEDY--VPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGTP 127 (229)
T ss_pred ccCHHHHHHHHhc-CCCcEEEEeccCCHHHH--HHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCCC
Confidence 3456777888876 5444322 222233221 23334578898855444 2224678888999988766553 23
Q ss_pred HHHHHHHHhCC-CCEE
Q 028497 166 EDSMRKMLHER-VDAV 180 (208)
Q Consensus 166 ~~~~~~~~~~g-vd~i 180 (208)
.+.++.++..| +|.|
T Consensus 128 ~~~~~~~~~~~~~Dyi 143 (229)
T PLN02334 128 VEAVEPVVEKGLVDMV 143 (229)
T ss_pred HHHHHHHHhccCCCEE
Confidence 55566666664 9987
No 113
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=80.50 E-value=32 Score=28.67 Aligned_cols=62 Identities=23% Similarity=0.185 Sum_probs=44.1
Q ss_pred hcCceEeecccccCHHHHHHHHh-CCCeEEEeeCCCH--------------------HHHHHHHhCCCCEEEcCChHHHH
Q 028497 131 RKAGVVGVYHPLIDEKLVRTFHG-RNKRVFAWTVDDE--------------------DSMRKMLHERVDAVVTSNPILFQ 189 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~-~g~~v~~wtv~~~--------------------~~~~~~~~~gvd~i~TD~P~~~~ 189 (208)
-|+|++-+.-...--+.++.+++ .++++.+|-|.-+ +.+.-+...|+|+|||-+...+.
T Consensus 240 EGAD~lMVKPal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D~~~~~~Esl~~~kRAGAd~IiTYfA~~~a 319 (323)
T PRK09283 240 EGADMVMVKPALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWIDEERVVLESLLSIKRAGADGILTYFAKDAA 319 (323)
T ss_pred hCCCEEEEcCCchHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCEEEecCHHHHH
Confidence 68887755544444577888875 5899999987532 12233447899999999988887
Q ss_pred HHH
Q 028497 190 RVM 192 (208)
Q Consensus 190 ~~~ 192 (208)
+++
T Consensus 320 ~~L 322 (323)
T PRK09283 320 RWL 322 (323)
T ss_pred Hhh
Confidence 765
No 114
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=80.23 E-value=11 Score=29.73 Aligned_cols=80 Identities=8% Similarity=0.082 Sum_probs=49.2
Q ss_pred EeeCHHHHHHHHhhccCCeEEE-EEEecCCCchhhhHhhhhcCceEeecccccC---HHHHHHHHhCCCeEEE--eeCCC
Q 028497 92 WAKSDNLVRDIMRLSSNVTAGY-IIMVDPSTGFRTNLLRIRKAGVVGVYHPLID---EKLVRTFHGRNKRVFA--WTVDD 165 (208)
Q Consensus 92 ~Sf~~~~l~~l~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~g~~v~~--wtv~~ 165 (208)
.+|.+..++.+++..|++++=+ ++..+|..+. ..+ ...|++++.++..... ...++.++++|+++.+ .+.-+
T Consensus 49 ~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i-~~~-~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~ 126 (228)
T PTZ00170 49 LSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWV-DDF-AKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTP 126 (228)
T ss_pred cCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHH-HHH-HHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4667888999999877777521 2212232111 222 3378998887765322 3678888999988764 23335
Q ss_pred HHHHHHHH
Q 028497 166 EDSMRKML 173 (208)
Q Consensus 166 ~~~~~~~~ 173 (208)
.+++++++
T Consensus 127 ~e~l~~~l 134 (228)
T PTZ00170 127 VEVLFPLI 134 (228)
T ss_pred HHHHHHHH
Confidence 66776665
No 115
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=79.95 E-value=26 Score=28.36 Aligned_cols=38 Identities=16% Similarity=0.400 Sum_probs=29.6
Q ss_pred HHHHHHHh-CCCeEEE-eeCCCHHHHHHHHhCCCCEEEcC
Q 028497 146 KLVRTFHG-RNKRVFA-WTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 146 ~~v~~~~~-~g~~v~~-wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
++++.+++ .++++.+ ++++++++++.+.+.|+||++.-
T Consensus 192 ~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 192 KLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred HHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 45666664 3666665 67899999999999999999864
No 116
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=79.60 E-value=17 Score=31.22 Aligned_cols=152 Identities=9% Similarity=-0.021 Sum_probs=83.9
Q ss_pred ccccccCHHHhhcccC--CCcCCCHHHHHHHHhcC--C------------ceEEEEeecCCCCCchhHHHHHHHHHHhcC
Q 028497 22 SKVGHLSMKEFAQKSH--DQVITTIEDALTLVSNS--V------------RKVILDAKVGPPSYEKGLAKDILSVIERTK 85 (208)
Q Consensus 22 ~~i~~~t~~eL~~~~~--~~~iptL~evL~~~~~~--~------------~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~ 85 (208)
.+|.++.|+--+.... =..-|+.+++++.-... . ..|.+=|-. .-.+...+++++.+
T Consensus 123 ~~~~~~ny~at~~ai~~a~~~~p~~~~~~~~~~~~~h~~~~~~~~~~~~~p~L~vALD~-------~~~~~A~~i~~~l~ 195 (391)
T PRK13307 123 NKIYQYNYGATKLAIKRALEGFPDVDKVLYEKDRALHPIMGFKVTRLWDPPYLQVALDL-------PDLEEVERVLSQLP 195 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHhhhhcccCCccccchhhhcccceEEEecCC-------CCHHHHHHHHHhcc
Confidence 5666666666543111 14579999999875431 0 112211111 11223444555543
Q ss_pred Cc-ce-------EEEeeCHHHHHHHHhhccCCeEEEEEE-ecCCCchhhhHhhhhcCceEeecccccC---HHHHHHHHh
Q 028497 86 CY-NC-------LVWAKSDNLVRDIMRLSSNVTAGYIIM-VDPSTGFRTNLLRIRKAGVVGVYHPLID---EKLVRTFHG 153 (208)
Q Consensus 86 ~~-~~-------ii~Sf~~~~l~~l~~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~ 153 (208)
-. .. .+.++-...++.+++..|+.++-+-.. .++.......+ ...|++++.++...-. ...++.+++
T Consensus 196 ~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~-a~aGAD~vTVH~ea~~~ti~~ai~~akk 274 (391)
T PRK13307 196 KSDHIIIEAGTPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMA-ADATADAVVISGLAPISTIEKAIHEAQK 274 (391)
T ss_pred cccceEEEECHHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHH-HhcCCCEEEEeccCCHHHHHHHHHHHHH
Confidence 11 11 234566788999999878876643322 23332211222 3489998888764322 356788999
Q ss_pred CCCeEEEeeCC--CHHHHHHHHhCCCCEEE
Q 028497 154 RNKRVFAWTVD--DEDSMRKMLHERVDAVV 181 (208)
Q Consensus 154 ~g~~v~~wtv~--~~~~~~~~~~~gvd~i~ 181 (208)
.|+.+.+=..| ++.+.-+.+..++|.|.
T Consensus 275 ~GikvgVD~lnp~tp~e~i~~l~~~vD~Vl 304 (391)
T PRK13307 275 TGIYSILDMLNVEDPVKLLESLKVKPDVVE 304 (391)
T ss_pred cCCEEEEEEcCCCCHHHHHHHhhCCCCEEE
Confidence 99999885554 44333333377888763
No 117
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=79.36 E-value=26 Score=29.39 Aligned_cols=49 Identities=6% Similarity=0.040 Sum_probs=28.7
Q ss_pred CHHHHHHHHhCCCe--EEEee--CCCHHHHHHHHhCCCCEEEcCChHHHHHHH
Q 028497 144 DEKLVRTFHGRNKR--VFAWT--VDDEDSMRKMLHERVDAVVTSNPILFQRVM 192 (208)
Q Consensus 144 ~~~~v~~~~~~g~~--v~~wt--v~~~~~~~~~~~~gvd~i~TD~P~~~~~~~ 192 (208)
+..=++.+++.|.+ ..+++ +-++++++.+++.|+..++.|.++++..+.
T Consensus 55 S~~E~~~~~~~G~~~~~i~~~~~~k~~~~l~~a~~~gi~~~~~ds~~el~~l~ 107 (362)
T cd00622 55 SKGEIELVLGLGVSPERIIFANPCKSISDIRYAAELGVRLFTFDSEDELEKIA 107 (362)
T ss_pred CHHHHHHHHHcCCCcceEEEcCCCCCHHHHHHHHHcCCCEEEECCHHHHHHHH
Confidence 34334555566654 34444 335667777777777666667777665544
No 118
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=79.20 E-value=23 Score=28.58 Aligned_cols=103 Identities=10% Similarity=0.123 Sum_probs=61.6
Q ss_pred HHHHHHHhhccCCeEEEEEEecCC-CchhhhHh---hhhcCceEeecc-cc-cCHHHHHHHHhCCCeEEEe-eCCC-HHH
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPS-TGFRTNLL---RIRKAGVVGVYH-PL-IDEKLVRTFHGRNKRVFAW-TVDD-EDS 168 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~---~~~~~~~~~~~~-~~-~~~~~v~~~~~~g~~v~~w-tv~~-~~~ 168 (208)
+.++.+|+..+++|+.++...+|. .+..+++. +..|++.+.+.. +. -..++++.++++|+..... +.++ .+.
T Consensus 78 ~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~er 157 (258)
T PRK13111 78 ELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDER 157 (258)
T ss_pred HHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHH
Confidence 456677755688887544433331 11223333 447777665422 21 1236788899999988764 4455 344
Q ss_pred HHHHH-----------hCCCCEEEcCChHHHHHHHHHHHhhh
Q 028497 169 MRKML-----------HERVDAVVTSNPILFQRVMQDIRTQC 199 (208)
Q Consensus 169 ~~~~~-----------~~gvd~i~TD~P~~~~~~~~~~~~~~ 199 (208)
++.+. ..|+.|..|..|..+.+++++.++-|
T Consensus 158 i~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~ 199 (258)
T PRK13111 158 LKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT 199 (258)
T ss_pred HHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC
Confidence 55444 24677777788888888888776543
No 119
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=79.13 E-value=46 Score=29.61 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=54.1
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeec-------c---------cccC--HHHHHHHHhCCCeE
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVY-------H---------PLID--EKLVRTFHGRNKRV 158 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~---------~~~~--~~~v~~~~~~g~~v 158 (208)
+.++++++..|+++++. . +-.+..........|++++.+- . +.++ .+..+.+++.|+++
T Consensus 271 ~~i~~ik~~~~~~~v~a--G-~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~v 347 (495)
T PTZ00314 271 DMIKKLKSNYPHVDIIA--G-NVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPC 347 (495)
T ss_pred HHHHHHHhhCCCceEEE--C-CcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeE
Confidence 46888888888877754 1 1111111122234788887421 0 1111 23455677889887
Q ss_pred EEe-eCCCHHHHHHHHhCCCCEEEcCCh
Q 028497 159 FAW-TVDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 159 ~~w-tv~~~~~~~~~~~~gvd~i~TD~P 185 (208)
.+= ++.+..++.+++.+|+++++--..
T Consensus 348 IadGGi~~~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 348 IADGGIKNSGDICKALALGADCVMLGSL 375 (495)
T ss_pred EecCCCCCHHHHHHHHHcCCCEEEECch
Confidence 774 578999999999999999986644
No 120
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=79.05 E-value=3.5 Score=33.30 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCC
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
-++++.+|+.|+-...|.. ++++.+.|.+.|+|.|+..-
T Consensus 140 Vemi~~A~~~gl~T~~yvf-~~e~A~~M~~AGaDiiv~H~ 178 (268)
T PF09370_consen 140 VEMIRKAHEKGLFTTAYVF-NEEQARAMAEAGADIIVAHM 178 (268)
T ss_dssp HHHHHHHHHTT-EE--EE--SHHHHHHHHHHT-SEEEEE-
T ss_pred HHHHHHHHHCCCeeeeeec-CHHHHHHHHHcCCCEEEecC
Confidence 3579999999999999988 77899999999999998654
No 121
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=78.96 E-value=46 Score=29.48 Aligned_cols=137 Identities=12% Similarity=0.059 Sum_probs=81.3
Q ss_pred ceEEEEeecCCCCCchhHHHHHHHHHHhcCCcc-eEEE-----ee-----CHHHHHHHHhhccCCeEEEEEEecCCCc-h
Q 028497 56 RKVILDAKVGPPSYEKGLAKDILSVIERTKCYN-CLVW-----AK-----SDNLVRDIMRLSSNVTAGYIIMVDPSTG-F 123 (208)
Q Consensus 56 ~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~-~ii~-----Sf-----~~~~l~~l~~~~p~~~~~~l~~~~~~~~-~ 123 (208)
+.+|++.|+-. .+.+...+...+++++... ++-. +| ....+.++|+.- ..+. -.+++++ +
T Consensus 356 VsINl~a~Dl~---s~rli~~~~~~l~~~~v~pqQI~lElTER~f~D~~~~~~iI~r~ReaG--~~Iy---IDDFGTGYS 427 (524)
T COG4943 356 VSINLSASDLA---SPRLIDRLNRKLAQYQVRPQQIALELTERTFADPKKMTPIILRLREAG--HEIY---IDDFGTGYS 427 (524)
T ss_pred EEEeeeehhhc---CchHHHHHHHHHHhcCcChHHheeehhhhhhcCchhhhHHHHHHHhcC--CeEE---EccCcCcch
Confidence 45666666543 2477777888888888632 2211 12 234677777742 2331 1123221 1
Q ss_pred hhhHhhhhcCceEeec--------c----cccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCC---EEEcCChHHH
Q 028497 124 RTNLLRIRKAGVVGVY--------H----PLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVD---AVVTSNPILF 188 (208)
Q Consensus 124 ~~~~~~~~~~~~~~~~--------~----~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd---~i~TD~P~~~ 188 (208)
.-.+.+....|.+-+. . ..+.+-+++.++..|+++.+=+|.++++..++.+.||+ |-.--.|-.+
T Consensus 428 nL~YLq~L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVaEGVEteeQ~~~LR~~Gv~~gQGW~fskaLp~ 507 (524)
T COG4943 428 NLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVAEGVETEEQVDWLRKRGVHYGQGWLFSKALPA 507 (524)
T ss_pred hHHHHhhCCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEeecccHHHHHHHHHHcCCccccccccCCCCCH
Confidence 0111122223332221 1 23567889999999999999999999999999999876 4555567666
Q ss_pred HHHHHHHHhhhh
Q 028497 189 QRVMQDIRTQCL 200 (208)
Q Consensus 189 ~~~~~~~~~~~~ 200 (208)
.++++..+++..
T Consensus 508 q~Fi~~~~q~~a 519 (524)
T COG4943 508 QAFLDWAEQQPA 519 (524)
T ss_pred HHHHHHHHhCcc
Confidence 777766554433
No 122
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=78.92 E-value=41 Score=28.88 Aligned_cols=111 Identities=6% Similarity=0.030 Sum_probs=68.8
Q ss_pred HHHHHHhcCCcceEEEeeC--HHHHHHHHhhccC--CeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHH
Q 028497 77 ILSVIERTKCYNCLVWAKS--DNLVRDIMRLSSN--VTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFH 152 (208)
Q Consensus 77 v~~~l~~~~~~~~ii~Sf~--~~~l~~l~~~~p~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 152 (208)
+.+++++++. ...+++.+ .+.++.+++..|+ +++.+.+..++.......+ ...|. .....+..=++.++
T Consensus 16 ~~~l~~~~~t-P~~v~d~~~l~~n~~~l~~~~~~~~~~i~yavKaN~~~~vl~~l-~~~G~-----g~dvaS~~E~~~~~ 88 (417)
T TIGR01048 16 LLELAEEFGT-PLYVYDEETIRERFRAYKEAFGGAYSLVCYAVKANSNLALLRLL-AELGS-----GFDVVSGGELYRAL 88 (417)
T ss_pred HHHHHHhhCC-CEEEEeHHHHHHHHHHHHHhhCCCCceEEEEehhCCCHHHHHHH-HHcCC-----cEEEeCHHHHHHHH
Confidence 4567777774 44444433 2456777777775 6666655544421111112 22332 12334555567778
Q ss_pred hCCCe--EEEee--CCCHHHHHHHHhCCCCEEEcCChHHHHHHHHH
Q 028497 153 GRNKR--VFAWT--VDDEDSMRKMLHERVDAVVTSNPILFQRVMQD 194 (208)
Q Consensus 153 ~~g~~--v~~wt--v~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~~ 194 (208)
+.|++ -.+++ +.++++++.+++.|+..+..|..+++..+.+.
T Consensus 89 ~~G~~~~~I~~~gp~k~~~~l~~a~~~gi~~i~iDs~~el~~l~~~ 134 (417)
T TIGR01048 89 AAGFPPEKIVFNGNGKSRAELERALELGIRCINVDSESELELLNEI 134 (417)
T ss_pred HcCCCcceEEEeCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHH
Confidence 88875 45554 35789999999999998899999998877653
No 123
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=78.64 E-value=34 Score=31.80 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC---ChHHHHHHH
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS---NPILFQRVM 192 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD---~P~~~~~~~ 192 (208)
.++..+++.|++|.+=+|++++++..+.++|++.++-. .|..+.++.
T Consensus 739 ~~~~~~~~~~i~via~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~ 788 (799)
T PRK11359 739 AITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIP 788 (799)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHH
Confidence 45677899999999999999999999999999977665 555544443
No 124
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=78.57 E-value=34 Score=27.75 Aligned_cols=92 Identities=12% Similarity=0.144 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhcCCcceEEEee-----CHHHHHHHHhhccCCeEEEEEEecCCC--ch----hhhHh-------hhhc-
Q 028497 72 GLAKDILSVIERTKCYNCLVWAK-----SDNLVRDIMRLSSNVTAGYIIMVDPST--GF----RTNLL-------RIRK- 132 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf-----~~~~l~~l~~~~p~~~~~~l~~~~~~~--~~----~~~~~-------~~~~- 132 (208)
.....++++|+++++.-..|... +++.++++.+ .+..+|-=...++.. .. ..++. +..|
T Consensus 98 ~~t~~iL~iLkk~~vkATFFv~G~~i~~~p~l~k~i~~--~GheIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i~~~~G~ 175 (268)
T TIGR02873 98 EYLPEILQILKKHDVKATFFLEGKWVKENSQLAKMIVE--QGHEIGNHAYNHPDMATLSKEEIYDQINQTNEIIEATIGV 175 (268)
T ss_pred chHHHHHHHHHHCCCCEEEEeehHhhhHCHHHHHHHHH--CCCEEEecCCcCCCcccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 46678999999999865544332 3455565544 334554222222211 01 11121 2233
Q ss_pred -CceEeecccccCHHHHHHHHhCCCeEEEeeCCC
Q 028497 133 -AGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDD 165 (208)
Q Consensus 133 -~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~ 165 (208)
+.++.+.+...+...++.+++.|+.+..|++++
T Consensus 176 ~p~~fRpP~G~~n~~~~~~l~~~G~~~v~Wsvd~ 209 (268)
T TIGR02873 176 TPKWFAPPSGSFNDNVVQIAADLQMGTIMWTVDT 209 (268)
T ss_pred CCCEEECCCCCCCHHHHHHHHHCCCeEEEeccCC
Confidence 345666666778999999999999999999864
No 125
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=78.42 E-value=34 Score=29.38 Aligned_cols=90 Identities=8% Similarity=0.137 Sum_probs=50.0
Q ss_pred HHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeE--EEee--CCCHHHHHHHH
Q 028497 98 LVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRV--FAWT--VDDEDSMRKML 173 (208)
Q Consensus 98 ~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v--~~wt--v~~~~~~~~~~ 173 (208)
..+.+++..|.+++.|-+..+|.... -......|.. ....+..=++.+.+.|+.- .+|+ +.+.++++.++
T Consensus 26 ~~~~l~~~lp~~~~~YAvKaN~~~~i-l~~l~~~G~g-----~DvaS~gEl~~al~~G~~~~~Iif~gp~K~~~~l~~a~ 99 (394)
T cd06831 26 KHSQWQTVMAQIKPFYTVRCNSTPAV-LEILAALGTG-----FACSSKNEMALVQELGVSPENIIYTNPCKQASQIKYAA 99 (394)
T ss_pred HHHHHHHHCCCCeEEeeeccCCCHHH-HHHHHHcCCC-----eEeCCHHHHHHHHhcCCCcCCEEEeCCCCCHHHHHHHH
Confidence 45566666677766655544442111 1111223311 2224444456666666543 3443 34677778888
Q ss_pred hCCCCEEEcCChHHHHHHHH
Q 028497 174 HERVDAVVTSNPILFQRVMQ 193 (208)
Q Consensus 174 ~~gvd~i~TD~P~~~~~~~~ 193 (208)
+.||..|..|...++.++.+
T Consensus 100 ~~Gv~~i~vDS~~El~~i~~ 119 (394)
T cd06831 100 KVGVNIMTCDNEIELKKIAR 119 (394)
T ss_pred HCCCCEEEECCHHHHHHHHH
Confidence 88887778888887776654
No 126
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=78.31 E-value=13 Score=28.85 Aligned_cols=85 Identities=8% Similarity=0.174 Sum_probs=52.8
Q ss_pred EeeCHHHHHHHHhhccCCeEE-EEEEecCCCchhhhHhhhhcCceEeecccccC--HHHHHHHHhCCCeEEEee-CCC-H
Q 028497 92 WAKSDNLVRDIMRLSSNVTAG-YIIMVDPSTGFRTNLLRIRKAGVVGVYHPLID--EKLVRTFHGRNKRVFAWT-VDD-E 166 (208)
Q Consensus 92 ~Sf~~~~l~~l~~~~p~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~~v~~wt-v~~-~ 166 (208)
.+|.+..++.+++. ++.++= -++-.+|..+. ..+ ...|++.+.++..... .+++++++++|+++.+.- ..+ .
T Consensus 42 ~~~g~~~i~~i~~~-~~~~~DvHLMv~~P~~~i-~~~-~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~ 118 (201)
T PF00834_consen 42 LTFGPDIIKAIRKI-TDLPLDVHLMVENPERYI-EEF-AEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPV 118 (201)
T ss_dssp B-B-HHHHHHHHTT-SSSEEEEEEESSSGGGHH-HHH-HHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-G
T ss_pred ccCCHHHHHHHhhc-CCCcEEEEeeeccHHHHH-HHH-HhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCc
Confidence 45788899999986 656652 34444554322 333 4488898887765443 478999999999987653 233 3
Q ss_pred HHHHHHHhCCCCEE
Q 028497 167 DSMRKMLHERVDAV 180 (208)
Q Consensus 167 ~~~~~~~~~gvd~i 180 (208)
+.+++++.. +|.|
T Consensus 119 ~~~~~~l~~-vD~V 131 (201)
T PF00834_consen 119 EELEPYLDQ-VDMV 131 (201)
T ss_dssp GGGTTTGCC-SSEE
T ss_pred hHHHHHhhh-cCEE
Confidence 456666664 6664
No 127
>PRK10551 phage resistance protein; Provisional
Probab=78.15 E-value=42 Score=29.99 Aligned_cols=119 Identities=12% Similarity=0.107 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhcCCcc-eEEEee------C-HHHHHHHHhh-ccCCeEEEEEEecCCCc-hhhhHhhhhcCceEeeccc
Q 028497 72 GLAKDILSVIERTKCYN-CLVWAK------S-DNLVRDIMRL-SSNVTAGYIIMVDPSTG-FRTNLLRIRKAGVVGVYHP 141 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~-~ii~Sf------~-~~~l~~l~~~-~p~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 141 (208)
.+.+.+.+.+++++... ++++.. + ......++.+ ..++++++- +.+.+ ..-.+.+...+|++-+...
T Consensus 365 ~f~~~l~~~l~~~~~~~~~LvlEItE~~~~~~~~~~~~l~~Lr~~G~~ialD---DFGtg~ssl~~L~~l~vD~lKID~~ 441 (518)
T PRK10551 365 SFKADVQRLLASLPADHFQIVLEITERDMVQEEEATKLFAWLHSQGIEIAID---DFGTGHSALIYLERFTLDYLKIDRG 441 (518)
T ss_pred hHHHHHHHHHHhCCCCcceEEEEEechHhcCCHHHHHHHHHHHHCCCEEEEE---CCCCCchhHHHHHhCCCCEEEECHH
Confidence 67778888888887642 332221 1 2222333332 234444322 22221 1112223345565554322
Q ss_pred c------------cCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC---ChHHHHHHHH
Q 028497 142 L------------IDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS---NPILFQRVMQ 193 (208)
Q Consensus 142 ~------------~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD---~P~~~~~~~~ 193 (208)
+ +-..++..+|+.|+.|.+=+|.++++.+.+.++|++.++-. .|-.+.++.+
T Consensus 442 fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEGVEt~~q~~~L~~~Gv~~~QGy~f~kP~~~~~~~~ 508 (518)
T PRK10551 442 FIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLRERGVNFLQGYWISRPLPLEDFVR 508 (518)
T ss_pred HHhhhccChHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHcCCCEEEcCccCCCCCHHHHHH
Confidence 1 11356888999999999999999999999999999988875 5666555544
No 128
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=77.99 E-value=39 Score=28.07 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=43.1
Q ss_pred hcCceEeecccccCHHHHHHHHh-CCCeEEEeeCCCH--------------------HHHHHHHhCCCCEEEcCChHHHH
Q 028497 131 RKAGVVGVYHPLIDEKLVRTFHG-RNKRVFAWTVDDE--------------------DSMRKMLHERVDAVVTSNPILFQ 189 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~-~g~~v~~wtv~~~--------------------~~~~~~~~~gvd~i~TD~P~~~~ 189 (208)
-|+|++-+.-.+.--+.++.+++ .++++.+|-|.-+ +.+.-+...|+|+|+|-+...+.
T Consensus 232 EGAD~lMVKPal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~id~~~~~~Esl~~~kRAGAd~IiTYfA~~~a 311 (314)
T cd00384 232 EGADILMVKPALAYLDIIRDVRERFDLPVAAYNVSGEYAMIKAAAKNGWIDEERVVLESLTSIKRAGADLIITYFAKDAA 311 (314)
T ss_pred hCCCEEEEcCCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEEeecHHHHH
Confidence 58887655444444577888875 6999999987533 12333447899999999888776
Q ss_pred HH
Q 028497 190 RV 191 (208)
Q Consensus 190 ~~ 191 (208)
++
T Consensus 312 ~~ 313 (314)
T cd00384 312 RW 313 (314)
T ss_pred hh
Confidence 54
No 129
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=77.46 E-value=32 Score=26.83 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=41.1
Q ss_pred hhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 129 RIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
...|++++.+... ....+++.+++.++++.+ .+.+.+.++.+.+.|+|+|+.+
T Consensus 77 ~~~g~d~v~l~~~-~~~~~~~~~~~~~i~~i~-~v~~~~~~~~~~~~gad~i~~~ 129 (236)
T cd04730 77 LEEGVPVVSFSFG-PPAEVVERLKAAGIKVIP-TVTSVEEARKAEAAGADALVAQ 129 (236)
T ss_pred HhCCCCEEEEcCC-CCHHHHHHHHHcCCEEEE-eCCCHHHHHHHHHcCCCEEEEe
Confidence 4478888776544 567888899999988754 4567788888999999999864
No 130
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=77.44 E-value=34 Score=27.18 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=45.5
Q ss_pred hhcCceEeeccc-----ccCHHHHHHHHhCCCeEEE-eeCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHH
Q 028497 130 IRKAGVVGVYHP-----LIDEKLVRTFHGRNKRVFA-WTVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDI 195 (208)
Q Consensus 130 ~~~~~~~~~~~~-----~~~~~~v~~~~~~g~~v~~-wtv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~ 195 (208)
..|..++..++. -..++.++...+.. ++++ =++++.++.+++.+.|+|.|+|- .|+.+++.+...
T Consensus 162 ~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~-~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~~~~v~~~ 237 (240)
T COG1646 162 YLGMPVVYLEAGSGAGDPVPVEMVSRVLSDT-PLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALETVEAI 237 (240)
T ss_pred HhCCeEEEEEecCCCCCCcCHHHHHHhhccc-eEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHHHHHHHHh
Confidence 456666555543 23567777776666 4333 36899999999999999999986 677777766543
No 131
>PRK15452 putative protease; Provisional
Probab=77.11 E-value=9.8 Score=33.29 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCeEEEee---CCCH------HHHHHHHhCCCCEEEcCChHHHHHHH
Q 028497 146 KLVRTFHGRNKRVFAWT---VDDE------DSMRKMLHERVDAVVTSNPILFQRVM 192 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wt---v~~~------~~~~~~~~~gvd~i~TD~P~~~~~~~ 192 (208)
+.++.+|.+|+++++-+ +.+. ..++.+.+.|||+|+.-+|..+.-+.
T Consensus 50 eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~k 105 (443)
T PRK15452 50 LGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVR 105 (443)
T ss_pred HHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHH
Confidence 45778999999998742 1221 12456668999999999999876443
No 132
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=76.78 E-value=6.9 Score=31.15 Aligned_cols=134 Identities=8% Similarity=0.114 Sum_probs=70.5
Q ss_pred CCCcCCCHHHHHHHHhcCC-ceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEE-EeeCHHHHHHHHhhccCCeEEEE
Q 028497 37 HDQVITTIEDALTLVSNSV-RKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLV-WAKSDNLVRDIMRLSSNVTAGYI 114 (208)
Q Consensus 37 ~~~~iptL~evL~~~~~~~-~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii-~Sf~~~~l~~l~~~~p~~~~~~l 114 (208)
.+...|.+-++-..+...+ -++-+-+..+..+-.+.-+..+.++++. ..-+ .+-..+.+....+..|+.-+ +
T Consensus 17 R~~~~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~----~lNlE~a~t~e~~~ia~~~kP~~vt--L 90 (239)
T PF03740_consen 17 RGGNYPDPVEAARIAEEAGADGITVHLREDRRHIQDRDVRRLRELVKT----PLNLEMAPTEEMVDIALKVKPDQVT--L 90 (239)
T ss_dssp TSSS-S-HHHHHHHHHHTT-SEEEEEB-TT-SSS-HHHHHHHHHH-SS----EEEEEEESSHHHHHHHHHH--SEEE--E
T ss_pred CCCCCCCHHHHHHHHHHcCCCEEEeccCCCcCcCCHHHHHHHHHHccc----CEEeccCCCHHHHHHHHhCCcCEEE--E
Confidence 3456777777766654421 2777888776544322333333333322 2223 55567777777777776544 2
Q ss_pred EEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 115 IMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
.+..+. ++....|-++.. +...+ .+.++.+++.|++|.++---++++++.+.+.|+|.|--.
T Consensus 91 VPE~r~-----e~TTegGldv~~-~~~~l-~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~Gad~VELh 152 (239)
T PF03740_consen 91 VPEKRE-----ELTTEGGLDVAG-NRDRL-KPVIKRLKDAGIRVSLFIDPDPEQIEAAKELGADRVELH 152 (239)
T ss_dssp E--SGG-----GBSTTSSB-TCG-GHHHH-HHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEEEEE
T ss_pred CCCCCC-----CcCCCcCChhhc-CHHHH-HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHcCCCEEEEe
Confidence 322211 221223333211 11112 567899999999999998778999999999999998654
No 133
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=76.61 E-value=41 Score=27.97 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=42.8
Q ss_pred hcCceEeecccccCHHHHHHHHhC--CCeEEEeeCCCH--------------------HHHHHHHhCCCCEEEcCChHHH
Q 028497 131 RKAGVVGVYHPLIDEKLVRTFHGR--NKRVFAWTVDDE--------------------DSMRKMLHERVDAVVTSNPILF 188 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~--g~~v~~wtv~~~--------------------~~~~~~~~~gvd~i~TD~P~~~ 188 (208)
-|+|++-+.-...--+.++.++++ ++++.+|-|.-+ +.+.-+...|+|.|+|-+...+
T Consensus 237 EGAD~lMVKPal~YLDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iDe~~~~~Esl~~ikRAGAd~IiTYfA~~~ 316 (320)
T cd04824 237 EGADMIMVKPGTPYLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFDLKRAVLEAMTGFRRAGADIIITYFTPEL 316 (320)
T ss_pred hCCCEEEEcCCchHHHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEEeecHHHH
Confidence 578876555444446788888764 799999987532 1223344789999999988877
Q ss_pred HHH
Q 028497 189 QRV 191 (208)
Q Consensus 189 ~~~ 191 (208)
.++
T Consensus 317 a~w 319 (320)
T cd04824 317 LDW 319 (320)
T ss_pred Hhh
Confidence 654
No 134
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=75.99 E-value=7.6 Score=30.08 Aligned_cols=110 Identities=16% Similarity=0.128 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhcCCc-ceEEEeeC-------HHHH-HHHHhhc-cCCeEEEEEEecCCCc-hhhhHhhhhcCceEeecc
Q 028497 72 GLAKDILSVIERTKCY-NCLVWAKS-------DNLV-RDIMRLS-SNVTAGYIIMVDPSTG-FRTNLLRIRKAGVVGVYH 140 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~-~~ii~Sf~-------~~~l-~~l~~~~-p~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~ 140 (208)
.+...+.+++++++.. +++++..+ ...+ ..++++. -++++++- +.+.. ..........++++-+..
T Consensus 100 ~~~~~l~~~l~~~~~~~~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~~iald---dfg~~~~~~~~l~~l~~d~iKld~ 176 (241)
T smart00052 100 DLVPRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGVRIALD---DFGTGYSSLSYLKRLPVDLLKIDK 176 (241)
T ss_pred hHHHHHHHHHHHcCCCHHHEEEEEeChhhhcChHHHHHHHHHHHHCCCEEEEe---CCCCcHHHHHHHHhCCCCeEEECH
Confidence 6677788888888764 24433321 1122 2333321 24444322 12111 111222335566665432
Q ss_pred cc------------cCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCC
Q 028497 141 PL------------IDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 141 ~~------------~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
.+ +-..++..++..|++|.+=+|++++++..+..+|+++++-.+
T Consensus 177 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~~~~~~l~~~Gi~~~QG~~ 232 (241)
T smart00052 177 SFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETPEQLDLLRSLGCDYGQGYL 232 (241)
T ss_pred HHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHcCCCEEeece
Confidence 21 113456778999999999999999999999999999887653
No 135
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=75.66 E-value=38 Score=26.93 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=34.0
Q ss_pred HHHHHHHHhC-CCeEEEeeC-CC------HHHHHHHHhCCCCEEEc-CChHHHHHHHHHHHhhhhhcCc
Q 028497 145 EKLVRTFHGR-NKRVFAWTV-DD------EDSMRKMLHERVDAVVT-SNPILFQRVMQDIRTQCLEEGF 204 (208)
Q Consensus 145 ~~~v~~~~~~-g~~v~~wtv-~~------~~~~~~~~~~gvd~i~T-D~P~~~~~~~~~~~~~~~~~~~ 204 (208)
.++++.+++. .+++++-+- |. +.-++.+.+.|++|++. |-|- +...+..+.|.+.|.
T Consensus 65 ~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~---ee~~~~~~~~~~~g~ 130 (242)
T cd04724 65 LELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPP---EEAEEFREAAKEYGL 130 (242)
T ss_pred HHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCH---HHHHHHHHHHHHcCC
Confidence 3455666643 567665333 32 44577788999999888 4332 234455666666664
No 136
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=75.51 E-value=8.1 Score=30.56 Aligned_cols=52 Identities=8% Similarity=0.124 Sum_probs=31.3
Q ss_pred CceEEEEeCccchhhhCCCcccccccCHHHhhcccCCCcCCCHHHHHHHHhc-------CCceEEEEeecCCCCCchhHH
Q 028497 2 ESCWLFTTGRDLQRISGNITSKVGHLSMKEFAQKSHDQVITTIEDALTLVSN-------SVRKVILDAKVGPPSYEKGLA 74 (208)
Q Consensus 2 Dg~~Vv~HD~~l~r~tg~g~~~i~~~t~~eL~~~~~~~~iptL~evL~~~~~-------~~~~l~lEiK~~~~~~~~~~~ 74 (208)
||++||+||.|+. . -.+|+|++..+++ .++.|.||.-... +.-
T Consensus 55 dgePvV~Hg~tlt----s---------------------~i~f~dv~~~I~~~AF~~S~yPvIlslE~Hcs~-----~qQ 104 (229)
T cd08627 55 DGMPVIYHGHTLT----T---------------------KIKFSDVLHTIKEHAFVTSEYPIILSIEDHCSI-----VQQ 104 (229)
T ss_pred CCCEEEEeCCcCC----C---------------------ceEHHHHHHHHHHhhccCCCCCEEEEEcccCCH-----HHH
Confidence 7899999987663 1 1347788877764 3346667766542 333
Q ss_pred HHHHHHHHh
Q 028497 75 KDILSVIER 83 (208)
Q Consensus 75 ~~v~~~l~~ 83 (208)
..+++.+++
T Consensus 105 ~~ma~~l~~ 113 (229)
T cd08627 105 RNMAQHFKK 113 (229)
T ss_pred HHHHHHHHH
Confidence 444555444
No 137
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=75.43 E-value=39 Score=26.79 Aligned_cols=54 Identities=7% Similarity=0.068 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCeEEEee--CCC--------HHHHHHHHhCCCCEEEc------CChHHHHHHHHHHHhhh
Q 028497 146 KLVRTFHGRNKRVFAWT--VDD--------EDSMRKMLHERVDAVVT------SNPILFQRVMQDIRTQC 199 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wt--v~~--------~~~~~~~~~~gvd~i~T------D~P~~~~~~~~~~~~~~ 199 (208)
+.++.+++.|+.+.+.. +.. .+.++.+.+.|++.|.- -.|..+.++++..+..+
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREAL 188 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhC
Confidence 45778899999987654 222 34567777899987653 38999998888776544
No 138
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=75.41 E-value=46 Score=27.69 Aligned_cols=62 Identities=18% Similarity=0.160 Sum_probs=44.1
Q ss_pred hcCceEeecccccCHHHHHHHHh-CCCeEEEeeCCCH--------------------HHHHHHHhCCCCEEEcCChHHHH
Q 028497 131 RKAGVVGVYHPLIDEKLVRTFHG-RNKRVFAWTVDDE--------------------DSMRKMLHERVDAVVTSNPILFQ 189 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~-~g~~v~~wtv~~~--------------------~~~~~~~~~gvd~i~TD~P~~~~ 189 (208)
-|+|++-+.-.+.--+.++.+++ .++++.+|-|.-+ +.+.-+...|+|.|+|-+...+.
T Consensus 237 EGAD~lMVKPal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~ikRAGAd~IiTY~A~~~a 316 (320)
T cd04823 237 EGADMVMVKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDEDKVMLESLLAFKRAGADGILTYFAKEAA 316 (320)
T ss_pred hCCCEEEEcCCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEeeccHHHHH
Confidence 58887765544445677887764 7899999987532 12233447899999999988887
Q ss_pred HHH
Q 028497 190 RVM 192 (208)
Q Consensus 190 ~~~ 192 (208)
+++
T Consensus 317 ~wl 319 (320)
T cd04823 317 EWL 319 (320)
T ss_pred Hhh
Confidence 765
No 139
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=75.07 E-value=67 Score=29.35 Aligned_cols=105 Identities=11% Similarity=0.185 Sum_probs=67.8
Q ss_pred CHHHHHHHHhhccCCeEEEEEEec--------CCCchh--hhHhhhhcCceEeecccccC----HHHHHHHHhCCCeE--
Q 028497 95 SDNLVRDIMRLSSNVTAGYIIMVD--------PSTGFR--TNLLRIRKAGVVGVYHPLID----EKLVRTFHGRNKRV-- 158 (208)
Q Consensus 95 ~~~~l~~l~~~~p~~~~~~l~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v-- 158 (208)
.++.++.+++..|+.++..+.... |..-.. -+.+...|.+++.+...+-+ ...++.++++|..+
T Consensus 63 p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~ 142 (593)
T PRK14040 63 PWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQG 142 (593)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEE
Confidence 357899999999999986555321 111000 11223478888776544332 24588899999975
Q ss_pred -EEeeCCC---H----HHHHHHHhCCCCEEE-cC-----ChHHHHHHHHHHHhhh
Q 028497 159 -FAWTVDD---E----DSMRKMLHERVDAVV-TS-----NPILFQRVMQDIRTQC 199 (208)
Q Consensus 159 -~~wtv~~---~----~~~~~~~~~gvd~i~-TD-----~P~~~~~~~~~~~~~~ 199 (208)
..||... . +.++.+.++|+|.|. .| .|..+.++++..+...
T Consensus 143 ~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~ 197 (593)
T PRK14040 143 TLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV 197 (593)
T ss_pred EEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc
Confidence 4566533 2 345667789999874 45 8999999998876543
No 140
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=74.94 E-value=43 Score=27.04 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=30.0
Q ss_pred HHHHHHHHhC-CCeEEE-eeCCCHHHHHHHHhCCCCEEEcC
Q 028497 145 EKLVRTFHGR-NKRVFA-WTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 145 ~~~v~~~~~~-g~~v~~-wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
.++++.+++. ++++.+ ++++++++++++.+. +||++.-
T Consensus 189 ~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVG 228 (258)
T PRK13111 189 AELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVG 228 (258)
T ss_pred HHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEc
Confidence 4577888875 777765 578899999999986 9999864
No 141
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=74.66 E-value=16 Score=25.63 Aligned_cols=48 Identities=2% Similarity=-0.035 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCC-eEEEeeC--CCHHHHHHHHhCCCCEEEcC--ChHHHHHHH
Q 028497 145 EKLVRTFHGRNK-RVFAWTV--DDEDSMRKMLHERVDAVVTS--NPILFQRVM 192 (208)
Q Consensus 145 ~~~v~~~~~~g~-~v~~wtv--~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~ 192 (208)
+++++.+++.|. .+.+|.. ..+++++++.++|+|.++.= .++.+..++
T Consensus 68 ~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 68 PEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 566777888866 3444433 45677899999999998854 445544444
No 142
>PRK06739 pyruvate kinase; Validated
Probab=74.39 E-value=41 Score=28.54 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=45.9
Q ss_pred ccCHHHHHHHHhCCCeEEEee------CC-------CHHHHHHHHhCCCCEEEcC-------ChHHHHHHHHHHHhhhh
Q 028497 142 LIDEKLVRTFHGRNKRVFAWT------VD-------DEDSMRKMLHERVDAVVTS-------NPILFQRVMQDIRTQCL 200 (208)
Q Consensus 142 ~~~~~~v~~~~~~g~~v~~wt------v~-------~~~~~~~~~~~gvd~i~TD-------~P~~~~~~~~~~~~~~~ 200 (208)
.+.+.+++.++.+|++|.+=| ++ +..++..++.-|+|+++-. ||.++.+.+++.....+
T Consensus 251 ~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE 329 (352)
T PRK06739 251 LLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIESVSTLRLVSEFAE 329 (352)
T ss_pred HHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHHHHHHHHHHHHHHH
Confidence 456788999999999999877 12 2357778889999999754 99999999987654443
No 143
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=74.34 E-value=42 Score=26.65 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=40.9
Q ss_pred hhhcCceEeecccc-----cCHHHHHHHHhC--CCeEEEe-eCCCHHHHHHHHhCCCCEEEcCC
Q 028497 129 RIRKAGVVGVYHPL-----IDEKLVRTFHGR--NKRVFAW-TVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 129 ~~~~~~~~~~~~~~-----~~~~~v~~~~~~--g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
...|++++.++... .+-+.+..++++ +++|..- .+.+.+++.+++..|+|+|+.=+
T Consensus 158 ~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 158 VDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred HHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcH
Confidence 34788988775322 345667777775 3777665 47889999999999999997644
No 144
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=74.28 E-value=39 Score=26.25 Aligned_cols=82 Identities=16% Similarity=0.041 Sum_probs=49.5
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecc----------cccCHHHHHHHHhC-CCeEEE-eeCC
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYH----------PLIDEKLVRTFHGR-NKRVFA-WTVD 164 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~-g~~v~~-wtv~ 164 (208)
+.++++++. +.+++..-. .. ..........|++++.+.. ......+++.+++. +++|.+ .++.
T Consensus 109 ~~i~~~~~~-~~i~vi~~v--~t--~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~ 183 (221)
T PRK01130 109 ELVKRIKEY-PGQLLMADC--ST--LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRIN 183 (221)
T ss_pred HHHHHHHhC-CCCeEEEeC--CC--HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCC
Confidence 456677665 666664222 11 1101122336778775421 11234566766654 777755 6788
Q ss_pred CHHHHHHHHhCCCCEEEcC
Q 028497 165 DEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 165 ~~~~~~~~~~~gvd~i~TD 183 (208)
+.+++.++++.|+|+|+.-
T Consensus 184 t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 184 TPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 9999999999999998764
No 145
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=74.19 E-value=35 Score=25.72 Aligned_cols=92 Identities=11% Similarity=0.171 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhcCCcceEEEee-----CHHHHHHHHhhccCCeEEEEEEecCCC--chh----hhH-------hhhhcC
Q 028497 72 GLAKDILSVIERTKCYNCLVWAK-----SDNLVRDIMRLSSNVTAGYIIMVDPST--GFR----TNL-------LRIRKA 133 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf-----~~~~l~~l~~~~p~~~~~~l~~~~~~~--~~~----~~~-------~~~~~~ 133 (208)
.....++++++++++.-..|... +++.++++.+ .+..+|.=...++.. ... .++ .+..|.
T Consensus 19 ~~t~~~l~~L~~~~ikaTfFv~g~~~~~~~~~~~~i~~--~Gheig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g~ 96 (191)
T TIGR02764 19 DYTEPILDTLKEYDVKATFFLSGSWAERHPELVKEIVK--DGHEIGSHGYRHKNYTTLEDEKIKKDILRAQEIIEKLTGK 96 (191)
T ss_pred ccHHHHHHHHHHcCCCEEEEeccHHHHHCHHHHHHHHh--CCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 45567899999999864444332 3456666655 334454222212110 000 111 122333
Q ss_pred --ceEeecccccCHHHHHHHHhCCCeEEEeeCCC
Q 028497 134 --GVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDD 165 (208)
Q Consensus 134 --~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~ 165 (208)
.++.+.+...++..++.+++.|+.+..|++++
T Consensus 97 ~~~~fr~P~G~~~~~~~~~l~~~G~~~v~w~~~~ 130 (191)
T TIGR02764 97 KPTLFRPPSGAFNKAVLKAAESLGYTVVHWSVDS 130 (191)
T ss_pred CCCEEECCCcCCCHHHHHHHHHcCCeEEEecCCC
Confidence 45555666778999999999999999999864
No 146
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=74.02 E-value=44 Score=26.78 Aligned_cols=68 Identities=9% Similarity=0.074 Sum_probs=48.5
Q ss_pred hHhhhhcCceEee--cccccCH----HHHHHHHhCCCeEEEee-CCCHHHHHHHHhCCCCEEEcC---ChHHHHHHHH
Q 028497 126 NLLRIRKAGVVGV--YHPLIDE----KLVRTFHGRNKRVFAWT-VDDEDSMRKMLHERVDAVVTS---NPILFQRVMQ 193 (208)
Q Consensus 126 ~~~~~~~~~~~~~--~~~~~~~----~~v~~~~~~g~~v~~wt-v~~~~~~~~~~~~gvd~i~TD---~P~~~~~~~~ 193 (208)
++....|.|++-+ +|..++. .+++.++..|..+.|=. .+++..++++++.|++||+-= .+++++++++
T Consensus 27 e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~ 104 (249)
T TIGR03239 27 EVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVA 104 (249)
T ss_pred HHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHH
Confidence 4445588888765 5665553 45666788888877654 367889999999999999865 5666666654
No 147
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=73.82 E-value=45 Score=26.77 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=61.8
Q ss_pred HHHHHHHHhhccCCeEEEEEEecCCCchhhhH--hhhhcCceEeecccc----cCHHHHHHHHhCCCeEEEeeC----CC
Q 028497 96 DNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNL--LRIRKAGVVGVYHPL----IDEKLVRTFHGRNKRVFAWTV----DD 165 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~v~~~~~~g~~v~~wtv----~~ 165 (208)
.+.++.+++..++.++..+.. +.......+ +...|.+.+.+.... .-.+.++.+++.|+.+.+... .+
T Consensus 62 ~e~i~~~~~~~~~~~~~~~~~--~~~~~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~ 139 (263)
T cd07943 62 EEYLEAAAEALKQAKLGVLLL--PGIGTVDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMAS 139 (263)
T ss_pred HHHHHHHHHhccCCEEEEEec--CCccCHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCC
Confidence 367788877677777754432 111111222 233677776643221 225678899999998866542 23
Q ss_pred HH----HHHHHHhCCCCEEE-cC-----ChHHHHHHHHHHHhh
Q 028497 166 ED----SMRKMLHERVDAVV-TS-----NPILFQRVMQDIRTQ 198 (208)
Q Consensus 166 ~~----~~~~~~~~gvd~i~-TD-----~P~~~~~~~~~~~~~ 198 (208)
++ -++.+.+.|++.|. .| .|..+.++++..+..
T Consensus 140 ~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 140 PEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence 33 34566688999864 33 899999998877644
No 148
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=73.79 E-value=60 Score=28.19 Aligned_cols=104 Identities=12% Similarity=0.182 Sum_probs=64.8
Q ss_pred HHHHHHHHhhccCCeEEEEEEec----CCCch---hhhHhh---hhcCceEeecccccCHHH----HHHHHhCCCeEE--
Q 028497 96 DNLVRDIMRLSSNVTAGYIIMVD----PSTGF---RTNLLR---IRKAGVVGVYHPLIDEKL----VRTFHGRNKRVF-- 159 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~~~----~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~----v~~~~~~g~~v~-- 159 (208)
++-|+++|+..|+-++-.|.... ...++ ...+.+ ..|.+.+.+...+-+.+. ++.+++.|..+.
T Consensus 65 WeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~ 144 (472)
T COG5016 65 WERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGT 144 (472)
T ss_pred HHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEE
Confidence 35688888888877653222211 11111 122322 378888877766655443 566788898764
Q ss_pred -EeeC---CC----HHHHHHHHhCCCCEEEcC------ChHHHHHHHHHHHhhh
Q 028497 160 -AWTV---DD----EDSMRKMLHERVDAVVTS------NPILFQRVMQDIRTQC 199 (208)
Q Consensus 160 -~wtv---~~----~~~~~~~~~~gvd~i~TD------~P~~~~~~~~~~~~~~ 199 (208)
.||. ++ .+-.+++.++|+|.|+-- .|..+-++++..++.+
T Consensus 145 i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~ 198 (472)
T COG5016 145 ISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKEL 198 (472)
T ss_pred EEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhc
Confidence 5664 33 245677889999999864 5777777777765543
No 149
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=73.65 E-value=20 Score=27.58 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC----ChHHHHHHHHH
Q 028497 146 KLVRTFHGRNKRVFAW-TVDDEDSMRKMLHERVDAVVTS----NPILFQRVMQD 194 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD----~P~~~~~~~~~ 194 (208)
++++.+.+.+.+|..= -+++++++.+++++|+++|+.. +|....+.+.+
T Consensus 135 ~lv~~l~~~~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITrP~~It~~F~~ 188 (192)
T PF04131_consen 135 ELVRELVQADVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITRPQEITKRFVD 188 (192)
T ss_dssp HHHHHHHHTTSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-HHHHHHHHHH
T ss_pred HHHHHHHhCCCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCCHHHHHHHHHH
Confidence 5788888889998665 4789999999999999999887 77776655443
No 150
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=73.63 E-value=23 Score=27.71 Aligned_cols=79 Identities=15% Similarity=0.014 Sum_probs=54.7
Q ss_pred HHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCC
Q 028497 98 LVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERV 177 (208)
Q Consensus 98 ~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gv 177 (208)
..++++.++.+..+-++...+ -+++...+++++++-...+.....+++...++.+.+ ++++.+++.++.++|+
T Consensus 53 ~a~~~~~lc~~~~v~liINd~------~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~~~iIG~-S~h~~eea~~A~~~g~ 125 (211)
T COG0352 53 LAEKLRALCQKYGVPLIINDR------VDLALAVGADGVHLGQDDMPLAEARELLGPGLIIGL-STHDLEEALEAEELGA 125 (211)
T ss_pred HHHHHHHHHHHhCCeEEecCc------HHHHHhCCCCEEEcCCcccchHHHHHhcCCCCEEEe-ecCCHHHHHHHHhcCC
Confidence 345566666556565566432 245556889998887776666666766666666554 5569999999999999
Q ss_pred CEEEcC
Q 028497 178 DAVVTS 183 (208)
Q Consensus 178 d~i~TD 183 (208)
|+|..-
T Consensus 126 DYv~~G 131 (211)
T COG0352 126 DYVGLG 131 (211)
T ss_pred CEEEEC
Confidence 998753
No 151
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=73.26 E-value=27 Score=29.39 Aligned_cols=57 Identities=11% Similarity=0.223 Sum_probs=40.6
Q ss_pred HHHHHHhC---CCeEE-EeeCCCHHHHHHHHhCCCCEEE------cCChHHHHHHHHHHHhhhhhcC
Q 028497 147 LVRTFHGR---NKRVF-AWTVDDEDSMRKMLHERVDAVV------TSNPILFQRVMQDIRTQCLEEG 203 (208)
Q Consensus 147 ~v~~~~~~---g~~v~-~wtv~~~~~~~~~~~~gvd~i~------TD~P~~~~~~~~~~~~~~~~~~ 203 (208)
.+..++++ ++++. +-++.+.+++.+++..|+|+|. .+.|..+.++.+++..-..++|
T Consensus 278 ~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 278 VIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 45555443 46765 6789999999999999999864 4568888887777665544443
No 152
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=73.16 E-value=24 Score=26.53 Aligned_cols=56 Identities=16% Similarity=0.035 Sum_probs=37.1
Q ss_pred hHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 126 NLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+++...+++.++.....+.....+.....+..+. .++++.++++++.+.|+|.+.-
T Consensus 66 ~la~~~~~dGvHl~~~~~~~~~~r~~~~~~~~ig-~S~h~~~e~~~a~~~g~dYv~~ 121 (180)
T PF02581_consen 66 DLALELGADGVHLGQSDLPPAEARKLLGPDKIIG-ASCHSLEEAREAEELGADYVFL 121 (180)
T ss_dssp HHHHHCT-SEEEEBTTSSSHHHHHHHHTTTSEEE-EEESSHHHHHHHHHCTTSEEEE
T ss_pred HHHHhcCCCEEEecccccchHHhhhhcccceEEE-eecCcHHHHHHhhhcCCCEEEE
Confidence 4555577787776665555555555555555444 5678888888888999998863
No 153
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=72.69 E-value=11 Score=30.05 Aligned_cols=132 Identities=10% Similarity=0.095 Sum_probs=74.5
Q ss_pred CCcCCCHHHHHHHHhcCC-ceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEE-EeeCHHHHHHHHhhccCCeEEEEE
Q 028497 38 DQVITTIEDALTLVSNSV-RKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLV-WAKSDNLVRDIMRLSSNVTAGYII 115 (208)
Q Consensus 38 ~~~iptL~evL~~~~~~~-~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii-~Sf~~~~l~~l~~~~p~~~~~~l~ 115 (208)
+...|..=++...+...+ -++-+-+..+..+-...-+..+.+++. . ..-+ .+-+.+.+....+..|+.-+ |.
T Consensus 17 ~~~~Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~---~-~lNlE~a~~~emi~ia~~vkP~~vt--LV 90 (237)
T TIGR00559 17 GTNEPDPLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALT---T-PFNIEMAPTEEMIRIAEEIKPEQVT--LV 90 (237)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcC---C-CEEeccCCCHHHHHHHHHcCCCEEE--EC
Confidence 445566666665554321 267777776554432233333333331 1 2222 45566777777777674333 23
Q ss_pred EecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 116 MVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+..+. ++....|-++. -+...+ .+.++.+++.|++|..|.--++++++...+.|+|.|--
T Consensus 91 PEkr~-----ElTTegGldv~-~~~~~l-~~~i~~l~~~gI~VSLFiDP~~~qi~~A~~~GAd~VEL 150 (237)
T TIGR00559 91 PEARD-----EVTTEGGLDVA-RLKDKL-CELVKRFHAAGIEVSLFIDADKDQISAAAEVGADRIEI 150 (237)
T ss_pred CCCCC-----CccCCcCchhh-hCHHHH-HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEE
Confidence 22221 22122333321 111112 56789999999999999766799999999999999853
No 154
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=72.62 E-value=28 Score=29.67 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=52.6
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeeccc----------c-----c-C----HHHHHHHHhCCC
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHP----------L-----I-D----EKLVRTFHGRNK 156 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-----~-~----~~~v~~~~~~g~ 156 (208)
..+.++|+..|..|+++-.................++|++.+... + + + ....+.+.+.|+
T Consensus 192 ~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~gl 271 (368)
T PF01645_consen 192 QLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGL 271 (368)
T ss_dssp HHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCC
Confidence 357889998999999987653221111112123377888776421 0 0 0 223455666776
Q ss_pred e--EEEe---eCCCHHHHHHHHhCCCCEEEcCChHHHH
Q 028497 157 R--VFAW---TVDDEDSMRKMLHERVDAVVTSNPILFQ 189 (208)
Q Consensus 157 ~--v~~w---tv~~~~~~~~~~~~gvd~i~TD~P~~~~ 189 (208)
+ |-++ .+.++.++-+++.+|+|+|-...+..+.
T Consensus 272 r~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liA 309 (368)
T PF01645_consen 272 RDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIA 309 (368)
T ss_dssp CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHH
T ss_pred CCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhh
Confidence 4 4444 3678999999999999999887766643
No 155
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=72.27 E-value=11 Score=29.89 Aligned_cols=132 Identities=8% Similarity=0.094 Sum_probs=75.0
Q ss_pred CCcCCCHHHHHHHHhcCC-ceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEE-EeeCHHHHHHHHhhccCCeEEEEE
Q 028497 38 DQVITTIEDALTLVSNSV-RKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLV-WAKSDNLVRDIMRLSSNVTAGYII 115 (208)
Q Consensus 38 ~~~iptL~evL~~~~~~~-~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii-~Sf~~~~l~~l~~~~p~~~~~~l~ 115 (208)
+...|.+-++...+...+ -++-+-+..+..+-...-+..+.++++ . +.-+ .+-..+.+....+..|+.-+ +.
T Consensus 17 ~~~~Pdpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~---~-~lNlE~a~t~em~~ia~~~kP~~vt--LV 90 (234)
T cd00003 17 GTNYPDPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVR---T-ELNLEMAPTEEMLEIALEVKPHQVT--LV 90 (234)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcC---C-CEEeccCCCHHHHHHHHHCCCCEEE--EC
Confidence 445666666666554321 266777776554432233333333332 1 2212 44466777777776675433 23
Q ss_pred EecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 116 MVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+..+. ++....|-++.. +...+ .+.++.+++.|++|.++.--++++++...+.|+|.|--
T Consensus 91 PEkr~-----E~TTegGldv~~-~~~~l-~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VEL 150 (234)
T cd00003 91 PEKRE-----ELTTEGGLDVAG-QAEKL-KPIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVEL 150 (234)
T ss_pred CCCCC-----CccCCccchhhc-CHHHH-HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEE
Confidence 22221 121223333211 11112 56789999999999999877899999999999999853
No 156
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=72.18 E-value=50 Score=26.57 Aligned_cols=101 Identities=8% Similarity=0.132 Sum_probs=57.6
Q ss_pred HHHHHHHhhccCCeEEEEEEecCC-CchhhhHh---hhhcCceEeeccccc--CHHHHHHHHhCCCeEE-EeeCCC-HHH
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPS-TGFRTNLL---RIRKAGVVGVYHPLI--DEKLVRTFHGRNKRVF-AWTVDD-EDS 168 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~--~~~~v~~~~~~g~~v~-~wtv~~-~~~ 168 (208)
+.++.+++..+++|+-+++..+|. .+...++. +..|++.+.++.--. ..++++.++++|+... +-+.++ .+.
T Consensus 76 ~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~er 155 (256)
T TIGR00262 76 ELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDER 155 (256)
T ss_pred HHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHH
Confidence 556777765577886655544441 11112332 347888766543221 2467889999999854 455555 345
Q ss_pred HHHHHh-----------CCCCEEEcCChHHHHHHHHHHHh
Q 028497 169 MRKMLH-----------ERVDAVVTSNPILFQRVMQDIRT 197 (208)
Q Consensus 169 ~~~~~~-----------~gvd~i~TD~P~~~~~~~~~~~~ 197 (208)
++.+.+ .|+.|.-+..+..+.+.+++.+.
T Consensus 156 i~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 156 LKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKA 195 (256)
T ss_pred HHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHh
Confidence 554443 24445444456667777776654
No 157
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=72.03 E-value=50 Score=26.52 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=42.3
Q ss_pred ccCHHHHHHHHh-CCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-------ChHHHHHHHHH
Q 028497 142 LIDEKLVRTFHG-RNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-------NPILFQRVMQD 194 (208)
Q Consensus 142 ~~~~~~v~~~~~-~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-------~P~~~~~~~~~ 194 (208)
..++++++.+++ .+++|.+- ++.+++++.+++++|+|++..+ +|..+.+.+..
T Consensus 161 i~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~ 222 (248)
T cd04728 161 LLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKL 222 (248)
T ss_pred CCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHH
Confidence 345888888877 47788776 4899999999999999998766 58887776664
No 158
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=72.02 E-value=80 Score=28.89 Aligned_cols=104 Identities=12% Similarity=0.150 Sum_probs=68.8
Q ss_pred CHHHHHHHHhhccCCeEEEEEEec--CC--Cch---hh---hHhhhhcCceEeecccccC----HHHHHHHHhCCCeEE-
Q 028497 95 SDNLVRDIMRLSSNVTAGYIIMVD--PS--TGF---RT---NLLRIRKAGVVGVYHPLID----EKLVRTFHGRNKRVF- 159 (208)
Q Consensus 95 ~~~~l~~l~~~~p~~~~~~l~~~~--~~--~~~---~~---~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v~- 159 (208)
.++.|+.+|+..|+.++..+.... +. .+. .. +.+...|.+++.+...+.+ ..-++.+++.|..+.
T Consensus 62 pwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~ 141 (596)
T PRK14042 62 PWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQG 141 (596)
T ss_pred HHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEE
Confidence 357899999999999998776432 11 111 11 1223478888776554433 335778899999764
Q ss_pred --EeeCC---CH----HHHHHHHhCCCCEEEc-C-----ChHHHHHHHHHHHhh
Q 028497 160 --AWTVD---DE----DSMRKMLHERVDAVVT-S-----NPILFQRVMQDIRTQ 198 (208)
Q Consensus 160 --~wtv~---~~----~~~~~~~~~gvd~i~T-D-----~P~~~~~~~~~~~~~ 198 (208)
+||.. +. +-++.+.++|++.|.- | .|..+.++++..+..
T Consensus 142 ~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~ 195 (596)
T PRK14042 142 AICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA 195 (596)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh
Confidence 36653 33 3456677899998754 4 799999999887654
No 159
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=71.62 E-value=18 Score=29.59 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=45.7
Q ss_pred HHHHHHh-CCCeEE-EeeCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHHHhhhhhcCcc
Q 028497 147 LVRTFHG-RNKRVF-AWTVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDIRTQCLEEGFS 205 (208)
Q Consensus 147 ~v~~~~~-~g~~v~-~wtv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~~~~~~~~~~~ 205 (208)
.+..+++ .+++|. +-.+.+.+++.+++..|+|+|.-= +|..+.++.+++..-..++|++
T Consensus 225 ~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 225 MVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred HHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC
Confidence 4444544 477876 467889999999999999997544 7888888888888888888864
No 160
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=71.25 E-value=37 Score=26.72 Aligned_cols=85 Identities=8% Similarity=0.143 Sum_probs=51.9
Q ss_pred EeeCHHHHHHHHhhccCCeE-EEEEEecCCCchhhhHhhhhcCceEeecccc--cCHHHHHHHHhCCCeEEE-eeCCCH-
Q 028497 92 WAKSDNLVRDIMRLSSNVTA-GYIIMVDPSTGFRTNLLRIRKAGVVGVYHPL--IDEKLVRTFHGRNKRVFA-WTVDDE- 166 (208)
Q Consensus 92 ~Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~g~~v~~-wtv~~~- 166 (208)
++|-+..++.+++. ...++ .-|+-.+|..+ ...+++ .|+++++++... --.+.++++++.|++..+ ....++
T Consensus 46 iTfGp~~v~~l~~~-t~~p~DvHLMV~~p~~~-i~~fa~-agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~ 122 (220)
T COG0036 46 ITFGPPVVKALRKI-TDLPLDVHLMVENPDRY-IEAFAK-AGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPL 122 (220)
T ss_pred cccCHHHHHHHhhc-CCCceEEEEecCCHHHH-HHHHHH-hCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 56778899999884 33333 22333344322 234544 789998876652 225789999999999865 345554
Q ss_pred HHHHHHHhCCCCEE
Q 028497 167 DSMRKMLHERVDAV 180 (208)
Q Consensus 167 ~~~~~~~~~gvd~i 180 (208)
+.+++++.. +|.|
T Consensus 123 ~~i~~~l~~-vD~V 135 (220)
T COG0036 123 EALEPVLDD-VDLV 135 (220)
T ss_pred HHHHHHHhh-CCEE
Confidence 455555543 5543
No 161
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=71.07 E-value=59 Score=26.99 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=44.1
Q ss_pred hcCceEeecccccCHHHHHHHH-hCCCeEEEeeCCCH--------------------HHHHHHHhCCCCEEEcCChHHHH
Q 028497 131 RKAGVVGVYHPLIDEKLVRTFH-GRNKRVFAWTVDDE--------------------DSMRKMLHERVDAVVTSNPILFQ 189 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~-~~g~~v~~wtv~~~--------------------~~~~~~~~~gvd~i~TD~P~~~~ 189 (208)
-|+|++-+.-.+.--+.++.++ ..++++..|.|.-+ +.+-.+...|+|+|+|-+...+.
T Consensus 245 EGAD~lMVKPal~YLDIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~IiTYfA~e~a 324 (330)
T COG0113 245 EGADILMVKPALPYLDIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLIITYFAKEVA 324 (330)
T ss_pred cCCcEEEEcCCchHHHHHHHHHHhcCCCeEEEecchHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCEEEeecHHHHH
Confidence 5888765544333346677766 46799999987533 12333447899999999999988
Q ss_pred HHHH
Q 028497 190 RVMQ 193 (208)
Q Consensus 190 ~~~~ 193 (208)
++++
T Consensus 325 ~~L~ 328 (330)
T COG0113 325 EWLK 328 (330)
T ss_pred HHhh
Confidence 8875
No 162
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=70.84 E-value=78 Score=28.28 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=39.8
Q ss_pred hcCceEeecccc----cCHHHHHHHHhC--CCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 131 RKAGVVGVYHPL----IDEKLVRTFHGR--NKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 131 ~~~~~~~~~~~~----~~~~~v~~~~~~--g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
.|+|++.+.... ...++++++++. +..+.+=.+.+.++.+.+++.|+|+|.
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~ 315 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLR 315 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEE
Confidence 788988764332 223678888886 577777789999999999999999994
No 163
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=70.68 E-value=38 Score=30.75 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=31.3
Q ss_pred cCHHHHHHHHhCCCeEEEe---eCCCHHHHHHHHhCCCCEEEcCC
Q 028497 143 IDEKLVRTFHGRNKRVFAW---TVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 143 ~~~~~v~~~~~~g~~v~~w---tv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
+++..++.+...|..+.+- ++.+.++++++.++|+|.|+||+
T Consensus 115 l~~~~i~~~~~~~~~LiItvD~Gi~~~e~i~~a~~~gidvIVtDH 159 (575)
T PRK11070 115 LSPEVVDQAHARGAQLIVTVDNGISSHAGVAHAHALGIPVLVTDH 159 (575)
T ss_pred CCHHHHHHHHhcCCCEEEEEcCCcCCHHHHHHHHHCCCCEEEECC
Confidence 5677888887777764433 23457788888999999999995
No 164
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=70.67 E-value=13 Score=29.69 Aligned_cols=131 Identities=7% Similarity=0.070 Sum_probs=73.6
Q ss_pred CCcCCCHHHHHHHHhcCC-ceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEE-EeeCHHHHHHHHhhccCCeEEEEE
Q 028497 38 DQVITTIEDALTLVSNSV-RKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLV-WAKSDNLVRDIMRLSSNVTAGYII 115 (208)
Q Consensus 38 ~~~iptL~evL~~~~~~~-~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii-~Sf~~~~l~~l~~~~p~~~~~~l~ 115 (208)
+...|.+-++...+...+ -++-+-+..+..+-.+.-+..+.++++ . ..-+ .+-+.+.+....+..|+.-+ |.
T Consensus 20 ~~~~Pd~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~---~-~lNlE~a~~~em~~ia~~~kP~~vt--LV 93 (239)
T PRK05265 20 GTNYPDPVRAALIAEQAGADGITVHLREDRRHIRDRDVRLLRETLK---T-ELNLEMAATEEMLDIALEVKPHQVT--LV 93 (239)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEecCCCCcccCCHHHHHHHHHhcC---C-CEEeccCCCHHHHHHHHHCCCCEEE--EC
Confidence 445666666666554321 266677766554332233333333332 1 2222 44566677777776674333 23
Q ss_pred EecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 116 MVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
+..+. ++....|-++.. +...+ ...++.+++.|++|..|.--++++++...+.|+|.|-
T Consensus 94 PE~r~-----E~TTegGldv~~-~~~~l-~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VE 152 (239)
T PRK05265 94 PEKRE-----ELTTEGGLDVAG-QFDKL-KPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIE 152 (239)
T ss_pred CCCCC-----CccCCccchhhc-CHHHH-HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEE
Confidence 22221 121223333211 11112 5678999999999999987788999999999999875
No 165
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=70.47 E-value=55 Score=26.36 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=48.3
Q ss_pred hhHhhhhcCceEee--cccccCH----HHHHHHHhCCCeEEEee-CCCHHHHHHHHhCCCCEEEcC---ChHHHHHHHH
Q 028497 125 TNLLRIRKAGVVGV--YHPLIDE----KLVRTFHGRNKRVFAWT-VDDEDSMRKMLHERVDAVVTS---NPILFQRVMQ 193 (208)
Q Consensus 125 ~~~~~~~~~~~~~~--~~~~~~~----~~v~~~~~~g~~v~~wt-v~~~~~~~~~~~~gvd~i~TD---~P~~~~~~~~ 193 (208)
.++....|.|++-+ +|..++. .+++.++..|....|=. .+++..++++++.|++||+-= .+++++++++
T Consensus 33 ~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 33 TEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred HHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHH
Confidence 34445588888765 5655553 45667788888877654 357889999999999999865 5555555554
No 166
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=70.45 E-value=52 Score=29.13 Aligned_cols=83 Identities=13% Similarity=0.076 Sum_probs=52.8
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCch-hhhHhhhhcCceEeec--------c--------cccCH--HHHHHHHhCCCe
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTGF-RTNLLRIRKAGVVGVY--------H--------PLIDE--KLVRTFHGRNKR 157 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~--------~--------~~~~~--~~v~~~~~~g~~ 157 (208)
+.++++++.+|++++.. . +-.+.. -..+ ...|++++.+- . +..+. +..+.+++.|++
T Consensus 255 ~~i~~i~~~~~~~~vi~--g-~~~t~~~~~~l-~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~ 330 (475)
T TIGR01303 255 SAIKAVRALDLGVPIVA--G-NVVSAEGVRDL-LEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGH 330 (475)
T ss_pred HHHHHHHHHCCCCeEEE--e-ccCCHHHHHHH-HHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCc
Confidence 36788888889888743 2 111111 1122 23677766421 1 11222 345566888999
Q ss_pred EEEe-eCCCHHHHHHHHhCCCCEEEcC
Q 028497 158 VFAW-TVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 158 v~~w-tv~~~~~~~~~~~~gvd~i~TD 183 (208)
+..= .++++.++.+++.+|++.++.-
T Consensus 331 viadGgi~~~~di~kala~GA~~vm~g 357 (475)
T TIGR01303 331 VWADGGVRHPRDVALALAAGASNVMVG 357 (475)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEeec
Confidence 8876 5789999999999999998865
No 167
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=70.30 E-value=51 Score=25.96 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=33.9
Q ss_pred HHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEE-EeeCHHHHHHHHhh
Q 028497 46 DALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLV-WAKSDNLVRDIMRL 105 (208)
Q Consensus 46 evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii-~Sf~~~~l~~l~~~ 105 (208)
+++..++..+..+.+|+|..+.. ..+...++.+.+.|..-..+ .+.....++.+.+.
T Consensus 44 ~~i~~l~~~~~~i~~D~Kl~Di~---~t~~~~i~~~~~~gad~itvH~~ag~~~i~~~~~~ 101 (230)
T PRK00230 44 QFVRELKQRGFKVFLDLKLHDIP---NTVAKAVRALAKLGVDMVNVHASGGPRMMKAAREA 101 (230)
T ss_pred HHHHHHHhcCCCEEEEeehhhcc---ccHHHHHHHHHHcCCCEEEEcccCCHHHHHHHHHH
Confidence 45656655445789999985432 23444555566777654555 34456667766664
No 168
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=68.79 E-value=62 Score=26.32 Aligned_cols=83 Identities=12% Similarity=-0.018 Sum_probs=51.8
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCchhhhHh--hhhcCceEeeccccc--CHHHHHHHHhC--CCeEEEeeCCCHHHHH
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLL--RIRKAGVVGVYHPLI--DEKLVRTFHGR--NKRVFAWTVDDEDSMR 170 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~v~~~~~~--g~~v~~wtv~~~~~~~ 170 (208)
++++.+|+..|+.++++-... + .+.. ...|+|++....-+. ..+.++.++.. .+++.+=+-=+++.+.
T Consensus 172 ~av~~~R~~~~~~~IgVev~t-~-----eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~~~~~~~i~i~AsGGI~~~ni~ 245 (272)
T cd01573 172 KALARLRATAPEKKIVVEVDS-L-----EEALAAAEAGADILQLDKFSPEELAELVPKLRSLAPPVLLAAAGGINIENAA 245 (272)
T ss_pred HHHHHHHHhCCCCeEEEEcCC-H-----HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhccCCCceEEEECCCCHHHHH
Confidence 467778877787766654432 1 1221 237888776532111 13455555544 4677766545888999
Q ss_pred HHHhCCCCEEEcCCh
Q 028497 171 KMLHERVDAVVTSNP 185 (208)
Q Consensus 171 ~~~~~gvd~i~TD~P 185 (208)
.+.+.|||+|.+-.+
T Consensus 246 ~~~~~Gvd~I~vsai 260 (272)
T cd01573 246 AYAAAGADILVTSAP 260 (272)
T ss_pred HHHHcCCcEEEEChh
Confidence 999999999976544
No 169
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=68.77 E-value=38 Score=26.17 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=43.4
Q ss_pred hhcCceEeeccc----ccCHHHHHHHHhC-CCeEEEe-eCCCHHHHHHHHhCCCCEEE---cCChHHHHHHHHHHHhhhh
Q 028497 130 IRKAGVVGVYHP----LIDEKLVRTFHGR-NKRVFAW-TVDDEDSMRKMLHERVDAVV---TSNPILFQRVMQDIRTQCL 200 (208)
Q Consensus 130 ~~~~~~~~~~~~----~~~~~~v~~~~~~-g~~v~~w-tv~~~~~~~~~~~~gvd~i~---TD~P~~~~~~~~~~~~~~~ 200 (208)
..|++++++... .-..+.++.+++. ++++.+= .+.++.+++.+.+.|+|+|+ ++.|. ..+.+....|.
T Consensus 42 ~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~---~~~~~~~~~~~ 118 (217)
T cd00331 42 KAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDD---EQLKELYELAR 118 (217)
T ss_pred HcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCH---HHHHHHHHHHH
Confidence 478888876421 1245556665554 6777653 34566789999999999996 34441 33334444444
Q ss_pred hcCc
Q 028497 201 EEGF 204 (208)
Q Consensus 201 ~~~~ 204 (208)
..|.
T Consensus 119 ~~g~ 122 (217)
T cd00331 119 ELGM 122 (217)
T ss_pred HcCC
Confidence 5554
No 170
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=68.76 E-value=22 Score=32.94 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHH-HhCCCCEEEcC-ChHHHHHHHHHHHhh
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKM-LHERVDAVVTS-NPILFQRVMQDIRTQ 198 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~-~~~gvd~i~TD-~P~~~~~~~~~~~~~ 198 (208)
++.++.+|+.|+++..=|.|++...+.. .+.|++.++.. .|+.=.++++.++.+
T Consensus 447 ~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~ 502 (673)
T PRK14010 447 VERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAK 502 (673)
T ss_pred HHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhC
Confidence 4679999999999999999998777766 47899988888 899999999888754
No 171
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=68.41 E-value=86 Score=27.82 Aligned_cols=83 Identities=17% Similarity=0.118 Sum_probs=51.1
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCch-hhhHhhhhcCceEeec-----------c-----cccC--HHHHHHHHhCCCe
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTGF-RTNLLRIRKAGVVGVY-----------H-----PLID--EKLVRTFHGRNKR 157 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~-----~~~~--~~~v~~~~~~g~~ 157 (208)
+.++++|+.+|++.+.. .+-.+.. ...+.+ .|+|++.+- + +.++ .+..+.+++.|++
T Consensus 257 ~~i~~ik~~~p~~~v~a---gnv~t~~~a~~l~~-aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~ 332 (479)
T PRK07807 257 EALRAVRALDPGVPIVA---GNVVTAEGTRDLVE-AGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAH 332 (479)
T ss_pred HHHHHHHHHCCCCeEEe---eccCCHHHHHHHHH-cCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCc
Confidence 46888888889877632 2222211 122323 677776521 0 1111 1233445577888
Q ss_pred EEEe-eCCCHHHHHHHHhCCCCEEEcC
Q 028497 158 VFAW-TVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 158 v~~w-tv~~~~~~~~~~~~gvd~i~TD 183 (208)
|..= .+.++.++.+++.+|+++++..
T Consensus 333 via~ggi~~~~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 333 VWADGGVRHPRDVALALAAGASNVMIG 359 (479)
T ss_pred EEecCCCCCHHHHHHHHHcCCCeeecc
Confidence 8776 5788999999999999998754
No 172
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=68.19 E-value=53 Score=27.80 Aligned_cols=111 Identities=6% Similarity=-0.046 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHhcCCc----c-eEEEeeCH---HHHHHHHhhccCCeEEEEEEec-CCCchhhhH---hhhhcCceEeec
Q 028497 72 GLAKDILSVIERTKCY----N-CLVWAKSD---NLVRDIMRLSSNVTAGYIIMVD-PSTGFRTNL---LRIRKAGVVGVY 139 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~----~-~ii~Sf~~---~~l~~l~~~~p~~~~~~l~~~~-~~~~~~~~~---~~~~~~~~~~~~ 139 (208)
.+...++...+++|.. . .+.. .++ +..+.+|+..|+.++....... +.......+ ....+++.+.++
T Consensus 77 ~in~~La~~a~~~G~~~~~Gs~~~~~-~~~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~ 155 (352)
T PRK05437 77 EINRKLAEAAEELGIAMGVGSQRAAL-KDPELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIH 155 (352)
T ss_pred HHHHHHHHHHHHcCCCeEecccHhhc-cChhhHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEe
Confidence 3446677777887732 1 1111 133 3566778888998886655321 101111222 234566665443
Q ss_pred ccc----------cCH----HHHHHHHhC-CCeEEEee---CCCHHHHHHHHhCCCCEEEcC
Q 028497 140 HPL----------IDE----KLVRTFHGR-NKRVFAWT---VDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 140 ~~~----------~~~----~~v~~~~~~-g~~v~~wt---v~~~~~~~~~~~~gvd~i~TD 183 (208)
.+. -+. +.++.+++. +++|.+=. ..+.+.++.+.+.|||+|...
T Consensus 156 l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs 217 (352)
T PRK05437 156 LNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (352)
T ss_pred CccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence 211 011 346666665 88888632 367889999999999998853
No 173
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=68.15 E-value=33 Score=27.71 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=83.8
Q ss_pred CcCCCHHHHHHHHhc---CCceEEEEeecCC--CCCchhHHHHHHHHHHhcCCcceEEEeeCHHHHHHHHhhccCCeEEE
Q 028497 39 QVITTIEDALTLVSN---SVRKVILDAKVGP--PSYEKGLAKDILSVIERTKCYNCLVWAKSDNLVRDIMRLSSNVTAGY 113 (208)
Q Consensus 39 ~~iptL~evL~~~~~---~~~~l~lEiK~~~--~~~~~~~~~~v~~~l~~~~~~~~ii~Sf~~~~l~~l~~~~p~~~~~~ 113 (208)
..-|+++..++.+.. .... .|||=-+- +.+.-..++...+-.-+.|+. ...-.+.++.+|+..+++|+.+
T Consensus 18 aG~P~~~~~~~~~~~l~~~GaD-~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~----~~~~~~~~~~ir~~~~~~pivl 92 (259)
T PF00290_consen 18 AGYPDLETTLEILKALEEAGAD-IIEIGIPFSDPVADGPVIQKASQRALKNGFT----LEKIFELVKEIRKKEPDIPIVL 92 (259)
T ss_dssp TTSSSHHHHHHHHHHHHHTTBS-SEEEE--SSSCTTSSHHHHHHHHHHHHTT------HHHHHHHHHHHHHHCTSSEEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCC-EEEECCCCCCCCCCCHHHHHHHHHHHHCCCC----HHHHHHHHHHHhccCCCCCEEE
Confidence 456888887777653 2211 36766442 112112333222221122321 1111246777776679999876
Q ss_pred EEEecCC-CchhhhHh---hhhcCceEee-cccc-cCHHHHHHHHhCCCeEEEe-eCCC-HHHHHHHH-----------h
Q 028497 114 IIMVDPS-TGFRTNLL---RIRKAGVVGV-YHPL-IDEKLVRTFHGRNKRVFAW-TVDD-EDSMRKML-----------H 174 (208)
Q Consensus 114 l~~~~~~-~~~~~~~~---~~~~~~~~~~-~~~~-~~~~~v~~~~~~g~~v~~w-tv~~-~~~~~~~~-----------~ 174 (208)
+...++. .+..+.+. +..|++.+-+ .-+. -..++.+.++++|+..... +.++ .+.+++.. .
T Consensus 93 m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~ 172 (259)
T PF00290_consen 93 MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSR 172 (259)
T ss_dssp EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESS
T ss_pred EeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeecc
Confidence 6544331 11123333 3467776543 2222 2356778899999987554 4444 44455543 3
Q ss_pred CCCCEEEcCChHHHHHHHHHHHhhh
Q 028497 175 ERVDAVVTSNPILFQRVMQDIRTQC 199 (208)
Q Consensus 175 ~gvd~i~TD~P~~~~~~~~~~~~~~ 199 (208)
.|+.|.-++.+..+.+++++.+..|
T Consensus 173 ~GvTG~~~~~~~~l~~~i~~ik~~~ 197 (259)
T PF00290_consen 173 MGVTGSRTELPDELKEFIKRIKKHT 197 (259)
T ss_dssp SSSSSTTSSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCcccchHHHHHHHHHHHhhc
Confidence 6788888888999999999887655
No 174
>PRK15447 putative protease; Provisional
Probab=68.14 E-value=21 Score=29.42 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCeEEEeeC---CCH---HHHHHHHhCCCCEEEcCChHHHHHHHH
Q 028497 145 EKLVRTFHGRNKRVFAWTV---DDE---DSMRKMLHERVDAVVTSNPILFQRVMQ 193 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv---~~~---~~~~~~~~~gvd~i~TD~P~~~~~~~~ 193 (208)
.+.++.+|++|++|++-+. ..+ +.+..+++.|+++|+..++..+. +++
T Consensus 51 ~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v~d~g~l~-~~~ 104 (301)
T PRK15447 51 LELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEANDLGAVR-LLA 104 (301)
T ss_pred HHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEEeCHHHHH-HHH
Confidence 3568889999999998552 212 45667778899999999999876 444
No 175
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=67.99 E-value=34 Score=26.89 Aligned_cols=57 Identities=14% Similarity=-0.052 Sum_probs=34.0
Q ss_pred hHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 126 NLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+++...+++.++.-.......-.+.....+.-+.+-+.++..+..++.+.|+|+|.-
T Consensus 81 dlA~~~~adGVHLg~~d~~~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~ 137 (221)
T PRK06512 81 RIAGRVKADGLHIEGNLAALAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFF 137 (221)
T ss_pred HHHHHhCCCEEEECccccCHHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEE
Confidence 455557788777654433333333333334444444567777777778889998853
No 176
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=67.60 E-value=62 Score=26.22 Aligned_cols=100 Identities=8% Similarity=0.098 Sum_probs=60.5
Q ss_pred HHHHHHHhhccCCeEEEEEEecCC-CchhhhHh---hhhcCceEeecc-cc-cCHHHHHHHHhCCCeEEE-eeCCC-HHH
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPS-TGFRTNLL---RIRKAGVVGVYH-PL-IDEKLVRTFHGRNKRVFA-WTVDD-EDS 168 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~---~~~~~~~~~~~~-~~-~~~~~v~~~~~~g~~v~~-wtv~~-~~~ 168 (208)
+.++++|+ .+++|+.++...+|. .+..+++. +..|++.+.+.. +. -..++.+.++++|+.... -+.++ .+.
T Consensus 81 ~~~~~~r~-~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~er 159 (263)
T CHL00200 81 SILSEVNG-EIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSR 159 (263)
T ss_pred HHHHHHhc-CCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHH
Confidence 45667765 377887544333331 11123333 347888776543 22 134678899999998654 45565 345
Q ss_pred HHHHH-----------hCCCCEEEcCChHHHHHHHHHHHh
Q 028497 169 MRKML-----------HERVDAVVTSNPILFQRVMQDIRT 197 (208)
Q Consensus 169 ~~~~~-----------~~gvd~i~TD~P~~~~~~~~~~~~ 197 (208)
++++. ..|+.|.-++.+..+.+++++.+.
T Consensus 160 i~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~ 199 (263)
T CHL00200 160 IQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKK 199 (263)
T ss_pred HHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHH
Confidence 55544 357777777888888888877664
No 177
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=67.56 E-value=13 Score=29.99 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCeEEEeeCCCH-----HHHHHH-HhCCCCEEEcCCh
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDE-----DSMRKM-LHERVDAVVTSNP 185 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~-----~~~~~~-~~~gvd~i~TD~P 185 (208)
+++++.+|++|+++.+|+---- +.++++ .+.|||++-+|.-
T Consensus 69 ~~~i~~l~~~g~~~~~~~~P~v~~w~~~~~~~~~~~~Gvdg~w~D~~ 115 (265)
T cd06589 69 KSMIDELHDNGVKLVLWIDPYIREWWAEVVKKLLVSLGVDGFWTDMG 115 (265)
T ss_pred HHHHHHHHHCCCEEEEEeChhHHHHHHHHHHHhhccCCCCEEeccCC
Confidence 5789999999999999974321 234444 6789999999943
No 178
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=67.35 E-value=23 Score=27.64 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=36.7
Q ss_pred HHHHHHHHh-CCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHH
Q 028497 145 EKLVRTFHG-RNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDI 195 (208)
Q Consensus 145 ~~~v~~~~~-~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~ 195 (208)
.++++.+.+ .++++.+. ++++.++++++++.|+|.|+.+ +|+.+.++.++.
T Consensus 62 ~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~ 119 (234)
T cd04732 62 LELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEY 119 (234)
T ss_pred HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHc
Confidence 455555544 46787775 5799999999999999998866 455666665543
No 179
>PRK11596 cyclic-di-GMP phosphodiesterase; Provisional
Probab=67.28 E-value=16 Score=29.12 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC---ChHHHHHH
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS---NPILFQRV 191 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD---~P~~~~~~ 191 (208)
.++..+++.|..|.+=+|.+.++++.+.++|+|.++-. .|..+.++
T Consensus 200 ~lv~~a~~~~~~viAeGVEt~eq~~~l~~lG~d~~QGy~~~~P~~~~~~ 248 (255)
T PRK11596 200 QLLHLMNRYCRGVIVEGVETPEEWRDVQRSPAFAAQGYFLSRPAPFETL 248 (255)
T ss_pred HHHHHHHHcCCeEEEEeCCCHHHHHHHHHCCCCEeecCccCCCCCHHHH
Confidence 45788999999999999999999999999999977665 46655443
No 180
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=67.10 E-value=85 Score=27.28 Aligned_cols=106 Identities=10% Similarity=0.066 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHhcC-CcceEEEeeCHHHHHHHHhhccCC-eEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHH
Q 028497 72 GLAKDILSVIERTK-CYNCLVWAKSDNLVRDIMRLSSNV-TAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVR 149 (208)
Q Consensus 72 ~~~~~v~~~l~~~~-~~~~ii~Sf~~~~l~~l~~~~p~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 149 (208)
.....+++-+++.- -.++++.++.+...+.+++..++. ..-|+--..| .+...+.+...++...+-..-+.+.++.
T Consensus 63 ~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~--~~v~rFl~~~~P~l~Ii~EtElWPnli~ 140 (419)
T COG1519 63 LAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP--IAVRRFLRKWRPKLLIIMETELWPNLIN 140 (419)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch--HHHHHHHHhcCCCEEEEEeccccHHHHH
Confidence 34444555444432 125567777777777777777653 3323221111 1123455557788766666777899999
Q ss_pred HHHhCCCeEEEee-----------------------------CCCHHHHHHHHhCCCCE
Q 028497 150 TFHGRNKRVFAWT-----------------------------VDDEDSMRKMLHERVDA 179 (208)
Q Consensus 150 ~~~~~g~~v~~wt-----------------------------v~~~~~~~~~~~~gvd~ 179 (208)
.++++|+++.+=. ..++.+.+++..+|+.-
T Consensus 141 e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa~~ 199 (419)
T COG1519 141 ELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRFRSLGAKP 199 (419)
T ss_pred HHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHHHhcCCcc
Confidence 9999999976422 23566788888888766
No 181
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=67.03 E-value=6.7 Score=28.65 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=38.2
Q ss_pred ccccCHHHHHHHHhCCCeE---EEeeCCCHHHHHHHHhCCCCEEEcC---ChHHHHHHHH
Q 028497 140 HPLIDEKLVRTFHGRNKRV---FAWTVDDEDSMRKMLHERVDAVVTS---NPILFQRVMQ 193 (208)
Q Consensus 140 ~~~~~~~~v~~~~~~g~~v---~~wtv~~~~~~~~~~~~gvd~i~TD---~P~~~~~~~~ 193 (208)
|...-+.+++.++++|..- .+=++-.+++++++.++|++.|++= -.+.+..+++
T Consensus 76 h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 76 HLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred HHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHH
Confidence 3344578899999999863 3445567888999999999999964 3344444443
No 182
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=66.99 E-value=68 Score=26.08 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=63.4
Q ss_pred HHHHHHHHhhccCCeEEEEEEecCC-CchhhhHh---hhhcCceEee-cccc-cCHHHHHHHHhCCCeEEEee-CCCH-H
Q 028497 96 DNLVRDIMRLSSNVTAGYIIMVDPS-TGFRTNLL---RIRKAGVVGV-YHPL-IDEKLVRTFHGRNKRVFAWT-VDDE-D 167 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~---~~~~~~~~~~-~~~~-~~~~~v~~~~~~g~~v~~wt-v~~~-~ 167 (208)
.+.++.+|+..+++|++++...+|. .+....+. +..|.+.+-+ .-+. ...++.+.+.++|+...... .+++ +
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~ 161 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDE 161 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 4677888877899999888766552 12223332 4477776543 3332 33567888999999876654 4544 4
Q ss_pred HHHHHH-----------hCCCCEEEcCChHHHHHHHHHHHh
Q 028497 168 SMRKML-----------HERVDAVVTSNPILFQRVMQDIRT 197 (208)
Q Consensus 168 ~~~~~~-----------~~gvd~i~TD~P~~~~~~~~~~~~ 197 (208)
.+++.. .+||.|+-......+.+.+++.+.
T Consensus 162 rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~ 202 (265)
T COG0159 162 RLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRK 202 (265)
T ss_pred HHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHH
Confidence 444443 247888777755556666666554
No 183
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=66.80 E-value=42 Score=25.33 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=35.7
Q ss_pred hHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 126 NLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
+++...|++.++.....++...++.....+..+ -.++++.++..++.+.|+|.|.
T Consensus 67 ~la~~~g~~GvHl~~~~~~~~~~r~~~~~~~~i-g~s~h~~~e~~~a~~~g~dyi~ 121 (196)
T TIGR00693 67 DLALALGADGVHLGQDDLPASEARALLGPDKII-GVSTHNLEELAEAEAEGADYIG 121 (196)
T ss_pred HHHHHcCCCEEecCcccCCHHHHHHhcCCCCEE-EEeCCCHHHHHHHhHcCCCEEE
Confidence 344456777776644445555555555455444 4567788888888889999987
No 184
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=66.54 E-value=85 Score=27.07 Aligned_cols=128 Identities=8% Similarity=-0.032 Sum_probs=68.0
Q ss_pred ceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEe-eCHH----HHHHHHhhccCCeEEEEEEecCCCchhhhHhh-
Q 028497 56 RKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWA-KSDN----LVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLR- 129 (208)
Q Consensus 56 ~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~S-f~~~----~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~- 129 (208)
..+.+|+|..+. ...+.+.+.+.|..-.++.. .... .++.+++. ++..++-+. +|.+.. +.+..
T Consensus 227 ~~I~~DLK~~Di------~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~--GikvgVD~l-np~tp~-e~i~~l 296 (391)
T PRK13307 227 AFIVADLKTLDT------GNLEARMAADATADAVVISGLAPISTIEKAIHEAQKT--GIYSILDML-NVEDPV-KLLESL 296 (391)
T ss_pred CeEEEEecccCh------hhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHc--CCEEEEEEc-CCCCHH-HHHHHh
Confidence 368889887642 23336666777765455532 3333 34444443 466766222 233211 12211
Q ss_pred hhcCceEeecc----ccc--CHHHHHHHHhCC--CeEEEeeCCCHHHHHHHHhCCCCEEEc-------CChHHHHHHHH
Q 028497 130 IRKAGVVGVYH----PLI--DEKLVRTFHGRN--KRVFAWTVDDEDSMRKMLHERVDAVVT-------SNPILFQRVMQ 193 (208)
Q Consensus 130 ~~~~~~~~~~~----~~~--~~~~v~~~~~~g--~~v~~wtv~~~~~~~~~~~~gvd~i~T-------D~P~~~~~~~~ 193 (208)
..+++++.++. ... .-+.++.+++.+ .++.+=+.=+.+.+..+.+.|+|+++. ++|....+-++
T Consensus 297 ~~~vD~Vllht~vdp~~~~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~ 375 (391)
T PRK13307 297 KVKPDVVELHRGIDEEGTEHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAEDFL 375 (391)
T ss_pred hCCCCEEEEccccCCCcccchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHH
Confidence 35667665442 011 123566666654 445555444577899999999998742 45655554443
No 185
>PRK08227 autoinducer 2 aldolase; Validated
Probab=66.22 E-value=16 Score=29.69 Aligned_cols=56 Identities=18% Similarity=-0.063 Sum_probs=38.1
Q ss_pred hcCceEeeccc--------ccC--HHHHHHHHhCCCeEEEeeCCC------HHH----HHHHHhCCCCEEEcCChH
Q 028497 131 RKAGVVGVYHP--------LID--EKLVRTFHGRNKRVFAWTVDD------EDS----MRKMLHERVDAVVTSNPI 186 (208)
Q Consensus 131 ~~~~~~~~~~~--------~~~--~~~v~~~~~~g~~v~~wtv~~------~~~----~~~~~~~gvd~i~TD~P~ 186 (208)
.|++.+++... .+. ...++.+++.|+++..|.... .+- .+-..++|+|.|=|++|.
T Consensus 106 lGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~ 181 (264)
T PRK08227 106 LNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVE 181 (264)
T ss_pred CCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCH
Confidence 78887765322 111 234678999999999986422 222 333458999999999997
No 186
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=66.09 E-value=73 Score=26.11 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCeEEE-----eeC-C----CH----HHHHHHHhCCCCEEE-cC-----ChHHHHHHHHHHHhhh
Q 028497 145 EKLVRTFHGRNKRVFA-----WTV-D----DE----DSMRKMLHERVDAVV-TS-----NPILFQRVMQDIRTQC 199 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~-----wtv-~----~~----~~~~~~~~~gvd~i~-TD-----~P~~~~~~~~~~~~~~ 199 (208)
.+.+++++++|+.|.+ ++. . ++ +.++.+.++|+|.|. .| .|..+.++++..+...
T Consensus 123 ~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 123 EPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred HHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhC
Confidence 3568889999998852 221 1 22 346677789999874 44 8999999998876543
No 187
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function.
Probab=66.04 E-value=12 Score=30.04 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=80.3
Q ss_pred cCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcC--CcceEEEe-------e--------CH-HHHHH
Q 028497 40 VITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTK--CYNCLVWA-------K--------SD-NLVRD 101 (208)
Q Consensus 40 ~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~--~~~~ii~S-------f--------~~-~~l~~ 101 (208)
.-.||+|.|+.+.+...++.||+|.. +.+...+++|++.. +..-+++. + +. ..+..
T Consensus 56 SdltLee~L~~v~~~~kGIKLDFKs~------eav~pSl~~L~~~~~~l~~PvWiNADIl~Gp~~~~~~~~Vd~~~Fl~~ 129 (244)
T PF10223_consen 56 SDLTLEEWLDEVLSSRKGIKLDFKSI------EAVEPSLDLLAKLSDKLTRPVWINADILPGPNGPTIPGPVDAKEFLSL 129 (244)
T ss_pred CcCcHHHHHHHHhccCcEEEEeccCH------HHHHHHHHHHHHHhhccCCCeeEeeeeccCCCCCCCCcccCHHHHHHH
Confidence 35689999999887767999999996 56667777776642 22112111 1 22 35777
Q ss_pred HHhhccCCeE--EEEEEecC----CCchh---hhHhhhhcC-----ceEe--eccccc--C-HHHHHHH-HhCCCeEEEe
Q 028497 102 IMRLSSNVTA--GYIIMVDP----STGFR---TNLLRIRKA-----GVVG--VYHPLI--D-EKLVRTF-HGRNKRVFAW 161 (208)
Q Consensus 102 l~~~~p~~~~--~~l~~~~~----~~~~~---~~~~~~~~~-----~~~~--~~~~~~--~-~~~v~~~-~~~g~~v~~w 161 (208)
+.+.+|++.+ ||.....+ ..|.+ .++.+.++. .-+. +....+ + +.+...+ .....-+-+|
T Consensus 130 v~~~fP~~tLS~GWTT~~~~~~~~~~Yt~~~v~~M~~l~~~~~~l~Q~VTFpvRA~l~~~S~~~l~wLL~~s~r~SLTvW 209 (244)
T PF10223_consen 130 VAEKFPHATLSLGWTTRWGPEVPNGGYTWEMVEEMLELCKGINQLPQPVTFPVRAGLARQSWPQLSWLLQQSPRYSLTVW 209 (244)
T ss_pred HHHhCCCEEEecCcccccCccCCCccccHHHHHHHHHHHHhhccCCCceeeeehhhhhhccHHHHHHHHcCCCCceEEEE
Confidence 8888887665 44432111 12222 222222322 0011 111111 1 2222222 2457788899
Q ss_pred eCC-C---HHHHHHHH-hCCCCEEEcCChHHHH
Q 028497 162 TVD-D---EDSMRKML-HERVDAVVTSNPILFQ 189 (208)
Q Consensus 162 tv~-~---~~~~~~~~-~~gvd~i~TD~P~~~~ 189 (208)
+-. | .++..++. ..|.+-|..|-|+..+
T Consensus 210 s~~~D~v~v~~Ll~lr~~~~~~rVyyDlpe~~~ 242 (244)
T PF10223_consen 210 SSKSDPVSVEDLLYLRRNFDKSRVYYDLPEPLR 242 (244)
T ss_pred ecCCCCccHHHHHHHHHhCCCcEEEEeCChhhh
Confidence 753 2 34555554 5799999999998765
No 188
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=65.94 E-value=65 Score=25.49 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=52.2
Q ss_pred HHHHHHhhccCCeEEEEEEecCCCchhhhH---hhhhcCceEeeccc----ccCHHHHHHHHhCCCeEEE-eeCCCHHHH
Q 028497 98 LVRDIMRLSSNVTAGYIIMVDPSTGFRTNL---LRIRKAGVVGVYHP----LIDEKLVRTFHGRNKRVFA-WTVDDEDSM 169 (208)
Q Consensus 98 ~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~v~~~~~~g~~v~~-wtv~~~~~~ 169 (208)
.++.+++. ++|+.+=+...... ...++ ....|++++++... ..+.+.++.++ .+++|.. ..+.+.+++
T Consensus 131 iv~avr~~--~~pVsvKir~g~~~-~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI~s~eda 206 (233)
T cd02911 131 FIKALKET--GVPVSVKIRAGVDV-DDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSVTTIESA 206 (233)
T ss_pred HHHHHHhc--CCCEEEEEcCCcCc-CHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCcCCHHHH
Confidence 35555552 56665544321101 11222 23478888876432 23456666665 5777754 568899999
Q ss_pred HHHHhCCCCEEEcCCh
Q 028497 170 RKMLHERVDAVVTSNP 185 (208)
Q Consensus 170 ~~~~~~gvd~i~TD~P 185 (208)
.+++..|+|+|.--++
T Consensus 207 ~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 207 KEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHcCCCEEEEcCC
Confidence 9999999999987654
No 189
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=65.71 E-value=22 Score=25.52 Aligned_cols=50 Identities=8% Similarity=-0.026 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCC---eEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHH
Q 028497 145 EKLVRTFHGRNK---RVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQD 194 (208)
Q Consensus 145 ~~~v~~~~~~g~---~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~ 194 (208)
+.+++.++++|. ++++=+....++++.+.++|+|++++= .+....+.+.+
T Consensus 71 ~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 71 PALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 567777887765 455544456778899999999999976 45555555443
No 190
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=65.30 E-value=28 Score=29.69 Aligned_cols=52 Identities=6% Similarity=-0.088 Sum_probs=39.8
Q ss_pred hhcCceEeeccc---------c-cCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 130 IRKAGVVGVYHP---------L-IDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 130 ~~~~~~~~~~~~---------~-~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
..|++++.++.+ . -...+++.+++.+++|.+=.+-+.+.++++++.|+|+|+
T Consensus 152 eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~ 213 (368)
T PRK08649 152 EAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVL 213 (368)
T ss_pred HCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 478888877532 1 124567778888999988567889999999999999984
No 191
>PRK10302 hypothetical protein; Provisional
Probab=65.24 E-value=9.5 Score=31.07 Aligned_cols=120 Identities=8% Similarity=0.086 Sum_probs=64.0
Q ss_pred CcCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEe-----e--CHHHHHHHHhhccCCeE
Q 028497 39 QVITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWA-----K--SDNLVRDIMRLSSNVTA 111 (208)
Q Consensus 39 ~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~S-----f--~~~~l~~l~~~~p~~~~ 111 (208)
..+..|+++|+.++.. ..+-+|+.+.+.-.+....+.+.++++++|+..+++-+ . +.+.++..+..-|.++.
T Consensus 109 ~~~~~l~~fl~~l~~~-~~~AvEfRh~sW~~~~~~~~~l~~lL~~~~~~~v~~D~~~~~~~~~~~~~~~daq~~~~~~P~ 187 (272)
T PRK10302 109 RELPALWQFLDALPAG-FTYGVEVRHPEFFAKGEAEQALNRGLHQRGVNRVILDSRPVHAARPHSEAIRDAQRKKPKVPV 187 (272)
T ss_pred ccHHHHHHHHHhCCCC-CCEEEEccCHHHcCCchhHHHHHHHHHHcCCEEEecCccccccCCCCcHHHHHHhhcCCCCCC
Confidence 4456677788877753 58899999876422223555677899999875444422 1 23455555555566655
Q ss_pred EEEEEecCCCchhhhHhhhhcCceEeecccccCH--HHHHHHHhCCCeEEEeeCCCH
Q 028497 112 GYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDE--KLVRTFHGRNKRVFAWTVDDE 166 (208)
Q Consensus 112 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~g~~v~~wtv~~~ 166 (208)
-.....+ ..+.|..|.+........+.+ +.+..+ ..|..++++.-|+.
T Consensus 188 ~~~~T~~------~~yvRlhG~~~~~y~~~~L~~wa~~i~~w-~~~~~~yvff~n~~ 237 (272)
T PRK10302 188 HAVVTAD------NPLVRFIGSDDMAQNLELFQVWLQKLPQW-HQTTTPYLFIHTPD 237 (272)
T ss_pred CeecCCC------cEEEEEeCCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCc
Confidence 3332111 122343443311111111111 223334 36689999987763
No 192
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=65.17 E-value=33 Score=26.20 Aligned_cols=55 Identities=16% Similarity=-0.013 Sum_probs=40.3
Q ss_pred HhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 127 LLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
.+...|+++++..........++..+..|..+.+-+ ++..+..++...|+|.|..
T Consensus 76 ~a~~~gad~vh~~~~~~~~~~~~~~~~~~~~~g~~~-~t~~e~~~a~~~gaD~v~~ 130 (212)
T PRK00043 76 LALAVGADGVHLGQDDLPVADARALLGPDAIIGLST-HTLEEAAAALAAGADYVGV 130 (212)
T ss_pred HHHHcCCCEEecCcccCCHHHHHHHcCCCCEEEEeC-CCHHHHHHHhHcCCCEEEE
Confidence 344578888776544444556677778888877655 5788899999999999984
No 193
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=65.09 E-value=74 Score=25.84 Aligned_cols=70 Identities=4% Similarity=0.009 Sum_probs=48.8
Q ss_pred hHhhhhcCceEee--cccccCH----HHHHHHHhCCCeEEEee-CCCHHHHHHHHhCCCCEEEc---CChHHHHHHHHHH
Q 028497 126 NLLRIRKAGVVGV--YHPLIDE----KLVRTFHGRNKRVFAWT-VDDEDSMRKMLHERVDAVVT---SNPILFQRVMQDI 195 (208)
Q Consensus 126 ~~~~~~~~~~~~~--~~~~~~~----~~v~~~~~~g~~v~~wt-v~~~~~~~~~~~~gvd~i~T---D~P~~~~~~~~~~ 195 (208)
++....|.|++-+ +|..++. .+++.++..|....+=. .+++..++++++.|++||+- +.+++++++++--
T Consensus 33 E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 33 EIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 4445578888765 5655553 35666778888766554 35788999999999999986 4666666666643
No 194
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=64.99 E-value=1e+02 Score=27.33 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=64.1
Q ss_pred HHHHHHHHhhccCCeEEEEEEec-CCCc--hhh-------hHhhhhcCceEeecccccC----HHHHHHHHhCCCeEE--
Q 028497 96 DNLVRDIMRLSSNVTAGYIIMVD-PSTG--FRT-------NLLRIRKAGVVGVYHPLID----EKLVRTFHGRNKRVF-- 159 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~~~-~~~~--~~~-------~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v~-- 159 (208)
++.++.+++..|+.++..+.... ...+ .+. +.+...|.+.+.+....-+ ...++.+++.|..+.
T Consensus 62 ~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 141 (467)
T PRK14041 62 WERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGA 141 (467)
T ss_pred HHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 46788888877888876544321 0000 011 2223477887766543322 345788899999875
Q ss_pred -EeeCC---CH----HHHHHHHhCCCCEEE-cC-----ChHHHHHHHHHHHhh
Q 028497 160 -AWTVD---DE----DSMRKMLHERVDAVV-TS-----NPILFQRVMQDIRTQ 198 (208)
Q Consensus 160 -~wtv~---~~----~~~~~~~~~gvd~i~-TD-----~P~~~~~~~~~~~~~ 198 (208)
.||.. +. +-++.+.++|+|.|. .| .|..+.++++..+..
T Consensus 142 i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~ 194 (467)
T PRK14041 142 ISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKK 194 (467)
T ss_pred EEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHh
Confidence 34443 22 346677789999874 45 899999999887654
No 195
>PTZ00066 pyruvate kinase; Provisional
Probab=64.98 E-value=47 Score=29.71 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=47.4
Q ss_pred cccCHHHHHHHHhCCCeEEEeeC------C-------CHHHHHHHHhCCCCEEEc-------CChHHHHHHHHHHHhhhh
Q 028497 141 PLIDEKLVRTFHGRNKRVFAWTV------D-------DEDSMRKMLHERVDAVVT-------SNPILFQRVMQDIRTQCL 200 (208)
Q Consensus 141 ~~~~~~~v~~~~~~g~~v~~wtv------~-------~~~~~~~~~~~gvd~i~T-------D~P~~~~~~~~~~~~~~~ 200 (208)
+.+.+.+++.++.+|++|.+=|- + +..++..++--|+|+|+- .||.++.+.+++.....+
T Consensus 294 p~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~yPveaV~~m~~I~~~aE 373 (513)
T PTZ00066 294 FLAQKMMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAE 373 (513)
T ss_pred chHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCcCHHHHHHHHHHHHHHHh
Confidence 35567889999999999998771 1 234677788889999987 899999999987755444
No 196
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=64.70 E-value=20 Score=28.99 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=9.6
Q ss_pred CceEEEEeCccc
Q 028497 2 ESCWLFTTGRDL 13 (208)
Q Consensus 2 Dg~~Vv~HD~~l 13 (208)
||++||+||.++
T Consensus 55 ~gepvV~Hg~tl 66 (260)
T cd08597 55 NGEPVIYHGHTL 66 (260)
T ss_pred CCCEEEEeCCcc
Confidence 688999998754
No 197
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=64.67 E-value=60 Score=24.66 Aligned_cols=87 Identities=8% Similarity=0.117 Sum_probs=47.7
Q ss_pred eeCHHHHHHHHhhccCCeEEE-EEEecCCCchhhhHhhhhcCceEeecccc--cCHHHHHHHHhCCCeEEE-eeCCCHHH
Q 028497 93 AKSDNLVRDIMRLSSNVTAGY-IIMVDPSTGFRTNLLRIRKAGVVGVYHPL--IDEKLVRTFHGRNKRVFA-WTVDDEDS 168 (208)
Q Consensus 93 Sf~~~~l~~l~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~g~~v~~-wtv~~~~~ 168 (208)
++..+.++.+++. ++.++-. ++...+.. . -+.....|++.+.++... .....++.+++.|+.+.+ .+.++..+
T Consensus 42 ~~~~~~v~~i~~~-~~~~v~v~lm~~~~~~-~-~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e 118 (210)
T TIGR01163 42 TFGPPVLEALRKY-TDLPIDVHLMVENPDR-Y-IEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLE 118 (210)
T ss_pred ccCHHHHHHHHhc-CCCcEEEEeeeCCHHH-H-HHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHH
Confidence 3566788888874 5555432 33322211 1 122345788886665432 224567888889987644 33444333
Q ss_pred HHHHHhCCCCEEEc
Q 028497 169 MRKMLHERVDAVVT 182 (208)
Q Consensus 169 ~~~~~~~gvd~i~T 182 (208)
..+.+..++|+|..
T Consensus 119 ~~~~~~~~~d~i~~ 132 (210)
T TIGR01163 119 FLEYVLPDVDLVLL 132 (210)
T ss_pred HHHHHHhhCCEEEE
Confidence 33334456887755
No 198
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=64.61 E-value=35 Score=25.42 Aligned_cols=55 Identities=15% Similarity=-0.060 Sum_probs=37.1
Q ss_pred HhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 127 LLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
.+...|+++++..........++..+..+..+.+-+ ++..++.++...|+|.|.-
T Consensus 67 ~a~~~g~~~vh~~~~~~~~~~~~~~~~~~~~~g~~~-~t~~~~~~~~~~g~d~i~~ 121 (196)
T cd00564 67 LALAVGADGVHLGQDDLPVAEARALLGPDLIIGVST-HSLEEALRAEELGADYVGF 121 (196)
T ss_pred HHHHcCCCEEecCcccCCHHHHHHHcCCCCEEEeeC-CCHHHHHHHhhcCCCEEEE
Confidence 344577777665544444555666666677765544 6778888888899999864
No 199
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=64.55 E-value=76 Score=25.79 Aligned_cols=38 Identities=13% Similarity=0.344 Sum_probs=31.3
Q ss_pred HHHHHHHHh-CCCeEEE-eeCCCHHHHHHHHhCCCCEEEcC
Q 028497 145 EKLVRTFHG-RNKRVFA-WTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 145 ~~~v~~~~~-~g~~v~~-wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
.++++++|+ .++++.+ +++.++++++++.+. +||++.-
T Consensus 194 ~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 194 KELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred HHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 567888876 5777655 789999999999999 9999864
No 200
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=64.54 E-value=17 Score=29.43 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHH-HhCCCCEEEcCCh
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKM-LHERVDAVVTSNP 185 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~-~~~gvd~i~TD~P 185 (208)
+++++.++++|++...||-.+-.++.+- ...|+...-||..
T Consensus 78 ~~~~~~~~~~g~~~glwt~~~l~~~~~ev~~~g~~~~k~Dv~ 119 (261)
T cd06596 78 KEVVDYLHANGVETGLWTQSGLRDIAKEVGAAGVRARKTDVA 119 (261)
T ss_pred HHHHHHHHHcCCccccccccchhhhhhhhccCCceEEeccch
Confidence 6778999999999999998886555554 4569999999988
No 201
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=64.41 E-value=32 Score=26.85 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=37.6
Q ss_pred CHHHHHHHHh-CCCeEEE-eeCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHH
Q 028497 144 DEKLVRTFHG-RNKRVFA-WTVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDI 195 (208)
Q Consensus 144 ~~~~v~~~~~-~g~~v~~-wtv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~ 195 (208)
+.++++.+.+ -++++.+ .++.+.++++.++..|++.|+.. +|+.+.++.++.
T Consensus 60 ~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~ 118 (230)
T TIGR00007 60 NLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEY 118 (230)
T ss_pred cHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHh
Confidence 3456666543 4677766 57889999999999999988866 566677666655
No 202
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=64.39 E-value=60 Score=24.58 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=39.2
Q ss_pred hhcCceEeecc-cccCHHHHHHHHhC--CCeEEEeeCCCHHHHHHHHhCCCCEEEcCC
Q 028497 130 IRKAGVVGVYH-PLIDEKLVRTFHGR--NKRVFAWTVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 130 ~~~~~~~~~~~-~~~~~~~v~~~~~~--g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
..|++++.+.. .....++++.++.. ++++.+=+--+.+.+..+++.|+++|..-.
T Consensus 115 ~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 115 ELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred HCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCCCEEEEEch
Confidence 37889887642 23357788887653 477766544488999999999999976653
No 203
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=64.35 E-value=14 Score=27.87 Aligned_cols=49 Identities=12% Similarity=0.293 Sum_probs=34.2
Q ss_pred HHHHHHHhC---CCeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHH
Q 028497 146 KLVRTFHGR---NKRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDI 195 (208)
Q Consensus 146 ~~v~~~~~~---g~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~ 195 (208)
+.++.+++. ..+ ..--+++.++...+++.|+|+|+-| .|+.+.++++..
T Consensus 68 ~av~~~~~~~~~~~~-I~VEv~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l 121 (169)
T PF01729_consen 68 EAVKAARQAAPEKKK-IEVEVENLEEAEEALEAGADIIMLDNMSPEDLKEAVEEL 121 (169)
T ss_dssp HHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCce-EEEEcCCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHH
Confidence 445555442 223 3335677899999999999999999 678888887754
No 204
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=64.11 E-value=21 Score=28.17 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
.+.++++++.|++|..|.--++++++.....|++.|-
T Consensus 114 ~~~v~~L~~~GirVSLFiD~d~~qi~aa~~~gA~~IE 150 (243)
T COG0854 114 RDAVRRLKNAGIRVSLFIDPDPEQIEAAAEVGAPRIE 150 (243)
T ss_pred HHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhCCCEEE
Confidence 5678999999999999998889999999999999874
No 205
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=64.02 E-value=48 Score=29.48 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=39.0
Q ss_pred hcCceEeeccc----ccCHHHHHHHHhC--CCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 131 RKAGVVGVYHP----LIDEKLVRTFHGR--NKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 131 ~~~~~~~~~~~----~~~~~~v~~~~~~--g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
.|++++.+... ....+.++.+++. ++++.+=++-+.++++.++++|+|+|.
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEE
Confidence 67888775432 1224678888876 577777788899999999999999994
No 206
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=63.94 E-value=69 Score=25.12 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=19.4
Q ss_pred CeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 156 KRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 156 ~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
+++.+=+.=+++.+..+.+.|+|+++
T Consensus 168 ~~I~vdGGI~~eni~~l~~aGAd~vV 193 (220)
T PRK08883 168 IRLEIDGGVKVDNIREIAEAGADMFV 193 (220)
T ss_pred eeEEEECCCCHHHHHHHHHcCCCEEE
Confidence 44555443458899999999999874
No 207
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=63.76 E-value=88 Score=26.26 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=61.0
Q ss_pred HHHHHHHHhhccCCeEEEEEEecCCCchhhhH--hhhhcCceEeeccc----ccCHHHHHHHHhCCCeEEEeeCC----C
Q 028497 96 DNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNL--LRIRKAGVVGVYHP----LIDEKLVRTFHGRNKRVFAWTVD----D 165 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~v~~~~~~g~~v~~wtv~----~ 165 (208)
.+.++.+.+..++.+++.+.. |......++ +...|++.+.+... ....+.++.+++.|+.|.+.-.. +
T Consensus 64 ~e~i~~~~~~~~~~~~~~ll~--pg~~~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~ 141 (333)
T TIGR03217 64 LEYIEAAADVVKRAKVAVLLL--PGIGTVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTP 141 (333)
T ss_pred HHHHHHHHHhCCCCEEEEEec--cCccCHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCC
Confidence 356666766666667654432 222111222 23467777654322 12356788999999998765432 3
Q ss_pred H----HHHHHHHhCCCCEE-EcC-----ChHHHHHHHHHHHh
Q 028497 166 E----DSMRKMLHERVDAV-VTS-----NPILFQRVMQDIRT 197 (208)
Q Consensus 166 ~----~~~~~~~~~gvd~i-~TD-----~P~~~~~~~~~~~~ 197 (208)
+ +.++.+.+.|++.| ++| .|..+.++++..+.
T Consensus 142 ~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~ 183 (333)
T TIGR03217 142 PEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKA 183 (333)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 3 34566678899985 456 89999988887653
No 208
>PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA. The endonuclease binds 2 magnesium ions per subunit. which probably participate in the reaction catalyzed by the enzyme. May bind an additional third magnesium ion after substrate binding.; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1UL1_Z 3Q8K_A 3Q8M_A 3Q8L_A 2IZO_A 1A77_A 1A76_A 3QEA_Z 3QE9_Y 3QEB_Z ....
Probab=63.68 E-value=12 Score=24.92 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=11.5
Q ss_pred HHHHHHHHhCC-CCEEEcCChHHH
Q 028497 166 EDSMRKMLHER-VDAVVTSNPILF 188 (208)
Q Consensus 166 ~~~~~~~~~~g-vd~i~TD~P~~~ 188 (208)
+.+..++.+.| ||+|+|+..+.+
T Consensus 15 eAq~A~L~~~g~vd~V~t~DsD~l 38 (94)
T PF00867_consen 15 EAQCAYLERNGLVDAVITEDSDLL 38 (94)
T ss_dssp HHHHHHHHHTTSSSEEE-SSSHHH
T ss_pred HHHHHHHHHhcceeEEEecCCCEE
Confidence 34455555554 566666655443
No 209
>PLN02765 pyruvate kinase
Probab=63.23 E-value=82 Score=28.32 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=45.2
Q ss_pred cccCHHHHHHHHhCCCeEEEeeC------C-------CHHHHHHHHhCCCCEEEcC-------ChHHHHHHHHHHHhhhh
Q 028497 141 PLIDEKLVRTFHGRNKRVFAWTV------D-------DEDSMRKMLHERVDAVVTS-------NPILFQRVMQDIRTQCL 200 (208)
Q Consensus 141 ~~~~~~~v~~~~~~g~~v~~wtv------~-------~~~~~~~~~~~gvd~i~TD-------~P~~~~~~~~~~~~~~~ 200 (208)
+.+.+.+++.|+.+|++|.+ |- + +..++..++--|+|+|+-. ||.++.+.+++.....+
T Consensus 292 p~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~yPveaV~~m~~I~~~aE 370 (526)
T PLN02765 292 FLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRICAEAE 370 (526)
T ss_pred HHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCCCHHHHHHHHHHHHHHHH
Confidence 34567889999999999997 72 1 1346777788899999755 99999999987755444
No 210
>PTZ00413 lipoate synthase; Provisional
Probab=63.15 E-value=1e+02 Score=26.66 Aligned_cols=134 Identities=10% Similarity=0.070 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhcCCcceEEEeeCH------------HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeec
Q 028497 72 GLAKDILSVIERTKCYNCLVWAKSD------------NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVY 139 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf~~------------~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (208)
.-...+++.+++.|+...+|.|.+. +.++.+++..|++.+..+...-......-...+..|++.++-+
T Consensus 180 eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~dvynHN 259 (398)
T PTZ00413 180 NEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSVYAHN 259 (398)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCCEEecc
Confidence 3445677788888887677877621 2467777777888887776421111110112234677766432
Q ss_pred -------cccc-----C----HHHHHHHHhC---CCeEEEe---eC-CCHH----HHHHHHhCCCCEEEcC---ChHHHH
Q 028497 140 -------HPLI-----D----EKLVRTFHGR---NKRVFAW---TV-DDED----SMRKMLHERVDAVVTS---NPILFQ 189 (208)
Q Consensus 140 -------~~~~-----~----~~~v~~~~~~---g~~v~~w---tv-~~~~----~~~~~~~~gvd~i~TD---~P~~~~ 189 (208)
++.+ + -+.++.+++. |+.+... +. .+.+ .+..+.++|||.+.-+ .|..-.
T Consensus 260 LETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQYL~Ps~~h 339 (398)
T PTZ00413 260 IECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQYLQPTKTR 339 (398)
T ss_pred cccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeeccccCCCccc
Confidence 1111 1 2356677765 7766433 33 3333 4667778999999984 233211
Q ss_pred ---------HHHHHHHhhhhhcCcc
Q 028497 190 ---------RVMQDIRTQCLEEGFS 205 (208)
Q Consensus 190 ---------~~~~~~~~~~~~~~~~ 205 (208)
+-+.+++...++.||.
T Consensus 340 ~~V~~yv~P~~F~~~~~~a~~~Gf~ 364 (398)
T PTZ00413 340 LKVSRYAHPKEFEMWEEEAMKMGFL 364 (398)
T ss_pred CCceeccCHHHHHHHHHHHHHcCCc
Confidence 2233566677788874
No 211
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=63.13 E-value=35 Score=27.93 Aligned_cols=60 Identities=10% Similarity=0.218 Sum_probs=45.8
Q ss_pred HHHHHHHhC-CCeEE-EeeCCCHHHHHHHHhCCCCEEEc-----CChHHHHHHHHHHHhhhhhcCcc
Q 028497 146 KLVRTFHGR-NKRVF-AWTVDDEDSMRKMLHERVDAVVT-----SNPILFQRVMQDIRTQCLEEGFS 205 (208)
Q Consensus 146 ~~v~~~~~~-g~~v~-~wtv~~~~~~~~~~~~gvd~i~T-----D~P~~~~~~~~~~~~~~~~~~~~ 205 (208)
+.+..++++ +++|. +-.+.+.+++.+++..|+|+|.. -.|..+.++.+++..-..++|++
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~~ 290 (301)
T PRK07259 224 RMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGIK 290 (301)
T ss_pred HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCCC
Confidence 456666554 78875 45688999999999999998652 27888888888887777777764
No 212
>PRK00208 thiG thiazole synthase; Reviewed
Probab=62.85 E-value=79 Score=25.43 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=42.1
Q ss_pred ccCHHHHHHHHh-CCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-------ChHHHHHHHHH
Q 028497 142 LIDEKLVRTFHG-RNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-------NPILFQRVMQD 194 (208)
Q Consensus 142 ~~~~~~v~~~~~-~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-------~P~~~~~~~~~ 194 (208)
..++++++.+++ .+++|.+- ++.+++++.+++++|+|++..+ +|..+.+.+..
T Consensus 161 i~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~ 222 (250)
T PRK00208 161 LLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKL 222 (250)
T ss_pred CCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence 345777888877 47888776 5889999999999999998765 58887776664
No 213
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=62.42 E-value=25 Score=29.19 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=40.5
Q ss_pred hcCceEeecccccCHHHHHHHHh-CCCeEEEeeCCCH--------------------HHHHHHHhCCCCEEEcCChHHHH
Q 028497 131 RKAGVVGVYHPLIDEKLVRTFHG-RNKRVFAWTVDDE--------------------DSMRKMLHERVDAVVTSNPILFQ 189 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~-~g~~v~~wtv~~~--------------------~~~~~~~~~gvd~i~TD~P~~~~ 189 (208)
-|+|++-+.-.+.--+.++.+++ .++++.+|-|.-+ +.+.-+...|+|.|+|-+...+.
T Consensus 241 EGAD~lMVKPal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a 320 (322)
T PRK13384 241 EGADILMVKPGTPYLDVLSRLRQETHLPLAAYQVGGEYAMIKFAALAGALDERAVVTETLGGLKRAGADLIVSYYAKQYA 320 (322)
T ss_pred hCCCEEEEcCCchHHHHHHHHHhccCCCEEEEEchHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCCEEeehhHHHHh
Confidence 57787655444444577887775 4899999987532 12333447899999998876654
Q ss_pred H
Q 028497 190 R 190 (208)
Q Consensus 190 ~ 190 (208)
+
T Consensus 321 ~ 321 (322)
T PRK13384 321 Q 321 (322)
T ss_pred h
Confidence 3
No 214
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=62.41 E-value=52 Score=26.62 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=42.3
Q ss_pred cccCHHHHHHHHh-CCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-------ChHHHHHHHH
Q 028497 141 PLIDEKLVRTFHG-RNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-------NPILFQRVMQ 193 (208)
Q Consensus 141 ~~~~~~~v~~~~~-~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-------~P~~~~~~~~ 193 (208)
...++..++.+.+ ..++|.+- ++.+++++..++++|+||+..| +|..+.+.++
T Consensus 174 Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~ 235 (267)
T CHL00162 174 GLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMK 235 (267)
T ss_pred CCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHH
Confidence 4567888887766 56787776 6789999999999999998764 8887777765
No 215
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=62.38 E-value=78 Score=25.17 Aligned_cols=41 Identities=10% Similarity=0.272 Sum_probs=33.0
Q ss_pred cCHHHHHHHHhC-CC-eEEE-eeCCCHHHHHHHHhCCCCEEEcC
Q 028497 143 IDEKLVRTFHGR-NK-RVFA-WTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 143 ~~~~~v~~~~~~-g~-~v~~-wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
.+.++++.+++. +. ++.+ .++++.+++++++..|+|+|+.-
T Consensus 170 ~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVG 213 (232)
T PRK04169 170 VPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVG 213 (232)
T ss_pred CCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEC
Confidence 457888888774 45 6655 46899999999999999999875
No 216
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=62.22 E-value=27 Score=23.62 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCeEEEeeCCC----HHHHHHHHhCCCC
Q 028497 145 EKLVRTFHGRNKRVFAWTVDD----EDSMRKMLHERVD 178 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~----~~~~~~~~~~gvd 178 (208)
.+.++.++++|+++++-|=|+ .+-.+++.++|++
T Consensus 20 ~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 578899999999999988654 4556777788877
No 217
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=62.09 E-value=17 Score=23.20 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=22.5
Q ss_pred hcCceEeecccccCHHHHHHHHhCCCeEEEee
Q 028497 131 RKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWT 162 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wt 162 (208)
.+.+.+.+.....+.+.|+.+|++|..|+.|.
T Consensus 25 ~~~~v~~iD~~~~~~~~I~~L~~~G~~vicY~ 56 (74)
T PF03537_consen 25 PDVDVVVIDLFDFSKEEIARLKAQGKKVICYF 56 (74)
T ss_dssp SS-SEEEE-SBS--HHHHHHHHHTT-EEEEEE
T ss_pred CCCCEEEECCccCCHHHHHHHHHCCCEEEEEE
Confidence 56677777666678899999999999999884
No 218
>PRK14057 epimerase; Provisional
Probab=62.02 E-value=57 Score=26.31 Aligned_cols=82 Identities=11% Similarity=0.060 Sum_probs=47.8
Q ss_pred EeeCHHHHHHHHhhcc-CCeEEEEEEecCCCchhhhHhhhhcCceEeecccc-cC-HHHHHHHHhCCCe---------EE
Q 028497 92 WAKSDNLVRDIMRLSS-NVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPL-ID-EKLVRTFHGRNKR---------VF 159 (208)
Q Consensus 92 ~Sf~~~~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~g~~---------v~ 159 (208)
+||.+..++.+++..| ++ -|+-.+|..+. +.+.+ .|++.+.+++.. .. ...++++|++|.+ +.
T Consensus 62 itfGp~~i~~i~~~~p~Dv---HLMV~~P~~~i-~~~~~-aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaG 136 (254)
T PRK14057 62 FTVGPWAVGQLPQTFIKDV---HLMVADQWTAA-QACVK-AGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRG 136 (254)
T ss_pred cccCHHHHHHhccCCCeeE---EeeeCCHHHHH-HHHHH-hCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeE
Confidence 5678888888876322 22 22333454322 34433 789988877653 22 3678899999863 32
Q ss_pred -EeeCC-CHHHHHHHHhCCCCE
Q 028497 160 -AWTVD-DEDSMRKMLHERVDA 179 (208)
Q Consensus 160 -~wtv~-~~~~~~~~~~~gvd~ 179 (208)
+-..+ ..+.++.++.. +|.
T Consensus 137 lAlnP~Tp~e~i~~~l~~-vD~ 157 (254)
T PRK14057 137 ISLCPATPLDVIIPILSD-VEV 157 (254)
T ss_pred EEECCCCCHHHHHHHHHh-CCE
Confidence 22333 35677777764 554
No 219
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=61.61 E-value=89 Score=25.57 Aligned_cols=101 Identities=12% Similarity=0.188 Sum_probs=59.9
Q ss_pred CHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCce---Eee--------cc-ccc-----CHHHHHHHHhC--C
Q 028497 95 SDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGV---VGV--------YH-PLI-----DEKLVRTFHGR--N 155 (208)
Q Consensus 95 ~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~--------~~-~~~-----~~~~v~~~~~~--g 155 (208)
....+..+++..|++++.-.-...|.......++-..|... ++. +| .+. -...++.++++ +
T Consensus 109 T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~ 188 (277)
T TIGR01334 109 THKMVTLAKKISPMAVVACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPE 188 (277)
T ss_pred HHHHHHHHHhcCCCCEEEecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCC
Confidence 45567777777898887543333344322222221233221 111 11 111 13456667765 4
Q ss_pred CeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHHH
Q 028497 156 KRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDIR 196 (208)
Q Consensus 156 ~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~~ 196 (208)
.++.| -+.+.++.+.+++.|+|.|+-| .|+.+.+.++..+
T Consensus 189 ~kIeV-Ev~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l~ 230 (277)
T TIGR01334 189 RKITV-EADTIEQALTVLQASPDILQLDKFTPQQLHHLHERLK 230 (277)
T ss_pred CCEEE-ECCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHh
Confidence 44333 4568999999999999999999 7888888887654
No 220
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=61.49 E-value=17 Score=28.92 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=26.6
Q ss_pred HHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 148 VRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 148 v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
-+.+.+.|..|..|+-+|+...+++.+.|+..|+
T Consensus 116 ae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavM 149 (247)
T PF05690_consen 116 AEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVM 149 (247)
T ss_dssp HHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBE
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEE
Confidence 3456799999999999999999999999999876
No 221
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=61.39 E-value=12 Score=32.14 Aligned_cols=39 Identities=33% Similarity=0.330 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCCeEEEe-----eCCCHHHHHHHHhCCCCEEEcC
Q 028497 145 EKLVRTFHGRNKRVFAW-----TVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~w-----tv~~~~~~~~~~~~gvd~i~TD 183 (208)
.++++.+|.+|++|++- -||.+...+.++++|+|-|++-
T Consensus 177 ~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~S 220 (395)
T COG1921 177 EELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFS 220 (395)
T ss_pred HHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEe
Confidence 46899999999999984 4557889999999999987764
No 222
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=60.82 E-value=50 Score=25.02 Aligned_cols=49 Identities=16% Similarity=0.417 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCeEEEee-----C-CCHHHHHHHHhC-CCCEEEcCChHHHHHHHH
Q 028497 145 EKLVRTFHGRNKRVFAWT-----V-DDEDSMRKMLHE-RVDAVVTSNPILFQRVMQ 193 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wt-----v-~~~~~~~~~~~~-gvd~i~TD~P~~~~~~~~ 193 (208)
++.++.++++|+.|++-. . |++..++...+- ++|||||=.+..+..+.+
T Consensus 38 k~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdGIISTk~~~i~~Akk 93 (181)
T COG1954 38 KEIVKKLKNRGKTVFIHVDLVEGLSNDEVAIEFIKEVIKPDGIISTKSNVIKKAKK 93 (181)
T ss_pred HHHHHHHHhCCcEEEEEeHHhcccCCchHHHHHHHHhccCCeeEEccHHHHHHHHH
Confidence 678899999999998642 3 566667776654 599999999998877654
No 223
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=60.79 E-value=40 Score=26.51 Aligned_cols=54 Identities=15% Similarity=0.283 Sum_probs=39.6
Q ss_pred HHHHHH-HhCCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHHHhhh
Q 028497 146 KLVRTF-HGRNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDIRTQC 199 (208)
Q Consensus 146 ~~v~~~-~~~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~~~~~ 199 (208)
++++.+ +..++++.+= ++.+.++++++++.|++-++.+ +|+.+.++.+++-.+|
T Consensus 63 ~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ 123 (229)
T PF00977_consen 63 ELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQR 123 (229)
T ss_dssp HHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGG
T ss_pred HHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCccc
Confidence 445544 4558888774 6899999999999999998877 7888888887765433
No 224
>PRK06852 aldolase; Validated
Probab=60.74 E-value=23 Score=29.40 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCeEEEeeC-------C--CHHH----HHHHHhCCCCEEEcCCh
Q 028497 146 KLVRTFHGRNKRVFAWTV-------D--DEDS----MRKMLHERVDAVVTSNP 185 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv-------~--~~~~----~~~~~~~gvd~i~TD~P 185 (208)
++++.+++.|+++.+|.. + +++. .+-..++|+|.|=|++|
T Consensus 158 ~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~ 210 (304)
T PRK06852 158 QIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYP 210 (304)
T ss_pred HHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCC
Confidence 456789999999998853 1 1222 34445899999999999
No 225
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.73 E-value=41 Score=27.45 Aligned_cols=49 Identities=6% Similarity=0.150 Sum_probs=36.4
Q ss_pred HHHHHHHHhC-C--CeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHH
Q 028497 145 EKLVRTFHGR-N--KRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQD 194 (208)
Q Consensus 145 ~~~v~~~~~~-g--~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~ 194 (208)
.+.++.++.+ + .++.+ -+++.++...+.++|+|.|..| .|+.+.++++.
T Consensus 169 ~~~v~~~k~~~p~~~~I~V-Ev~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~ 222 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEI-ECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAY 222 (273)
T ss_pred HHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHH
Confidence 3566777664 2 44544 5679999999999999999999 56677777653
No 226
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=60.52 E-value=78 Score=26.88 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCcceEEEee--C-H---HHHHHHHhhccCCeEEEEEEecCCCc-hhhhHhhhhcCceEeec-------
Q 028497 74 AKDILSVIERTKCYNCLVWAK--S-D---NLVRDIMRLSSNVTAGYIIMVDPSTG-FRTNLLRIRKAGVVGVY------- 139 (208)
Q Consensus 74 ~~~v~~~l~~~~~~~~ii~Sf--~-~---~~l~~l~~~~p~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~------- 139 (208)
.+.+-.++ +.+..-.+|-+. + . +.++++|+.+|++++. .. +-.++ ...++.+ .|++.+-+-
T Consensus 110 ~er~~~L~-~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~vi--aG-NV~T~e~a~~L~~-aGad~vkVGiGpGsiC 184 (352)
T PF00478_consen 110 FERAEALV-EAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVI--AG-NVVTYEGAKDLID-AGADAVKVGIGPGSIC 184 (352)
T ss_dssp HHHHHHHH-HTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEE--EE-EE-SHHHHHHHHH-TT-SEEEESSSSSTTB
T ss_pred HHHHHHHH-HcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEE--ec-ccCCHHHHHHHHH-cCCCEEEEeccCCccc
Confidence 34444444 446533445332 2 1 3678888889987773 22 11121 1123433 667765431
Q ss_pred ---------ccccC--HHHHHHHHhCCCeEEEee-CCCHHHHHHHHhCCCCEEEcCC
Q 028497 140 ---------HPLID--EKLVRTFHGRNKRVFAWT-VDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 140 ---------~~~~~--~~~v~~~~~~g~~v~~wt-v~~~~~~~~~~~~gvd~i~TD~ 184 (208)
.+.++ .+..+.+++.|+++..-+ +....++-+++..|+|.|+.-.
T Consensus 185 tTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~ 241 (352)
T PF00478_consen 185 TTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGS 241 (352)
T ss_dssp HHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEEST
T ss_pred ccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeech
Confidence 12222 244566788999999885 7899999999999999998654
No 227
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=60.42 E-value=84 Score=24.92 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=33.3
Q ss_pred HHHHHHHHh-CCCeEE--Eee---CCCHHH-HHHHHhCCCCEEEcC-ChHHHHHHHHHHHhhhhhcCc
Q 028497 145 EKLVRTFHG-RNKRVF--AWT---VDDEDS-MRKMLHERVDAVVTS-NPILFQRVMQDIRTQCLEEGF 204 (208)
Q Consensus 145 ~~~v~~~~~-~g~~v~--~wt---v~~~~~-~~~~~~~gvd~i~TD-~P~~~~~~~~~~~~~~~~~~~ 204 (208)
.++++.+++ -.++++ +|- +.+++. ++.+.+.|+++|+.- -|-.+.+...+..+.|.+.|+
T Consensus 63 ~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl 130 (244)
T PRK13125 63 WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGL 130 (244)
T ss_pred HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence 456677765 356653 221 344444 777889999999874 221112233344455556654
No 228
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=60.18 E-value=1.1e+02 Score=26.11 Aligned_cols=111 Identities=7% Similarity=0.054 Sum_probs=63.9
Q ss_pred HHHHHHhcCCcceEEEeeCH--HHHHHHHhhccC-CeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHh
Q 028497 77 ILSVIERTKCYNCLVWAKSD--NLVRDIMRLSSN-VTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHG 153 (208)
Q Consensus 77 v~~~l~~~~~~~~ii~Sf~~--~~l~~l~~~~p~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 153 (208)
+.++.+++|-....+++.+. +.++.+++..|. .++.+.+..++.......+ ...+. .....+..=++.+++
T Consensus 15 ~~~l~~~~g~tP~~v~d~~~l~~n~~~l~~~~~~~~~i~yavKaN~~~~vl~~l-~~~g~-----g~dvaS~~E~~~~~~ 88 (398)
T TIGR03099 15 LTELAARAGGTPFYAYDRGLVSERVAALRKALPEELAIHYAVKANPMPALLAHM-APLVD-----GFDVASAGELAVALD 88 (398)
T ss_pred HHHHHHHhCCCCEEEEeHHHHHHHHHHHHHhccccCcEEEEeccCCCHHHHHHH-HHcCC-----cEEEeCHHHHHHHHH
Confidence 45566667622444444432 456677776664 5666555444321111111 21221 123345555677778
Q ss_pred CCCe---EEEeeC-CCHHHHHHHHhCCCCEEEcCChHHHHHHHHH
Q 028497 154 RNKR---VFAWTV-DDEDSMRKMLHERVDAVVTSNPILFQRVMQD 194 (208)
Q Consensus 154 ~g~~---v~~wtv-~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~~ 194 (208)
.|.+ +...+. .+.++++.+++.|+ .+..|..+++..+.+-
T Consensus 89 ~G~~~~~I~~~gp~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~ 132 (398)
T TIGR03099 89 TGYDPGCISFAGPGKTDAELRRALAAGV-LINVESLRELNRLAAL 132 (398)
T ss_pred cCCChhHEEEeCCCCCHHHHHHHHhCCC-EEEECCHHHHHHHHHH
Confidence 8875 333333 47889999999999 8899999988877653
No 229
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=60.00 E-value=46 Score=30.92 Aligned_cols=54 Identities=9% Similarity=0.091 Sum_probs=46.0
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHH-HhCCCCEEEcC-ChHHHHHHHHHHHhh
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKM-LHERVDAVVTS-NPILFQRVMQDIRTQ 198 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~-~~~gvd~i~TD-~P~~~~~~~~~~~~~ 198 (208)
++.++.+|+.|+++..=|.|++...+.. .+.|++-+... .|+.=.+++++++++
T Consensus 451 ~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~PedK~~iV~~lQ~~ 506 (679)
T PRK01122 451 KERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPEDKLALIRQEQAE 506 (679)
T ss_pred HHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHHHHHHHHHHHHHc
Confidence 4678999999999999999998777765 47899988888 899989999888754
No 230
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=59.88 E-value=1.1e+02 Score=26.04 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=31.4
Q ss_pred cCHHHHHHHHhCCCeE--EEee--CCCHHHHHHHHhCCCCEEEcCChHHHHHHHH
Q 028497 143 IDEKLVRTFHGRNKRV--FAWT--VDDEDSMRKMLHERVDAVVTSNPILFQRVMQ 193 (208)
Q Consensus 143 ~~~~~v~~~~~~g~~v--~~wt--v~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~ 193 (208)
.+..=++.+.+.|++- .+|+ ..+.++++.+++.|| -|..|.+.++.++.+
T Consensus 56 aS~~El~~al~~G~~~~~Ii~~gp~K~~~~L~~ai~~gv-~i~iDS~~El~~i~~ 109 (379)
T cd06836 56 ASPGELELALAAGFPPERIVFDSPAKTRAELREALELGV-AINIDNFQELERIDA 109 (379)
T ss_pred cCHHHHHHHHHcCCChhhEEEeCCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHH
Confidence 4444456666666542 3453 345677777778887 577777777776654
No 231
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=59.64 E-value=1.3e+02 Score=26.73 Aligned_cols=84 Identities=18% Similarity=0.035 Sum_probs=48.8
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecc--------cc------cCHHH----HHHHHhCCCeE
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYH--------PL------IDEKL----VRTFHGRNKRV 158 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~------~~~~~----v~~~~~~g~~v 158 (208)
..++.+++..|++++.. . .-.+..........|++++.+-+ .. -+-.. .+.+++.|+++
T Consensus 258 ~~i~~i~~~~p~~~vi~--g-~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~v 334 (486)
T PRK05567 258 DRVREIKAKYPDVQIIA--G-NVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPV 334 (486)
T ss_pred HHHHHHHhhCCCCCEEE--e-ccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeE
Confidence 45777887778877643 2 11111101112337888774311 00 01122 33344567777
Q ss_pred EEe-eCCCHHHHHHHHhCCCCEEEcC
Q 028497 159 FAW-TVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 159 ~~w-tv~~~~~~~~~~~~gvd~i~TD 183 (208)
.+= ++.++.++.+++.+|++.++--
T Consensus 335 iadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 335 IADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred EEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 664 5789999999999999998754
No 232
>PLN02591 tryptophan synthase
Probab=59.08 E-value=93 Score=25.00 Aligned_cols=100 Identities=11% Similarity=0.112 Sum_probs=59.9
Q ss_pred HHHHHHHhhccCCeEEEEEEecCC-CchhhhHh---hhhcCceEeec-ccc-cCHHHHHHHHhCCCeEEEee-CCCH-HH
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPS-TGFRTNLL---RIRKAGVVGVY-HPL-IDEKLVRTFHGRNKRVFAWT-VDDE-DS 168 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~---~~~~~~~~~~~-~~~-~~~~~v~~~~~~g~~v~~wt-v~~~-~~ 168 (208)
+.++.+|+ .+++|+.++...+|. .+..+++. +..|++.+-+. -+. -..++.+.++++|+...... .+++ +.
T Consensus 68 ~~~~~~r~-~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~r 146 (250)
T PLN02591 68 SMLKEVAP-QLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTER 146 (250)
T ss_pred HHHHHHhc-CCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHH
Confidence 45566664 367786544333331 11223333 34677765432 222 12467888999999876654 5553 33
Q ss_pred HHHHH-----------hCCCCEEEcCChHHHHHHHHHHHh
Q 028497 169 MRKML-----------HERVDAVVTSNPILFQRVMQDIRT 197 (208)
Q Consensus 169 ~~~~~-----------~~gvd~i~TD~P~~~~~~~~~~~~ 197 (208)
+++.. ..|+.|.-++.|..+.+++++.++
T Consensus 147 i~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 147 MKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred HHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 44433 368888888889998888887765
No 233
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.83 E-value=1e+02 Score=25.27 Aligned_cols=82 Identities=13% Similarity=0.042 Sum_probs=54.0
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCchhhhHh--hhhcCceEeecccccCHHHHHHHHh---CCCeEEEeeCCCHHHHHH
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLL--RIRKAGVVGVYHPLIDEKLVRTFHG---RNKRVFAWTVDDEDSMRK 171 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~---~g~~v~~wtv~~~~~~~~ 171 (208)
..+..+|+..|+.+++.-... . +++. -..|+|++.. ..++++.++.+.+ ..+++.+=+-=+.+.+..
T Consensus 178 ~av~~~r~~~~~~~I~VEv~t-l-----eea~eA~~~gaD~I~L--D~~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~ 249 (277)
T PRK05742 178 QAVAAAHRIAPGKPVEVEVES-L-----DELRQALAAGADIVML--DELSLDDMREAVRLTAGRAKLEASGGINESTLRV 249 (277)
T ss_pred HHHHHHHHhCCCCeEEEEeCC-H-----HHHHHHHHcCCCEEEE--CCCCHHHHHHHHHHhCCCCcEEEECCCCHHHHHH
Confidence 456777777777777655532 1 1221 2378888765 3456666665443 266777776557889999
Q ss_pred HHhCCCCEEEcCChH
Q 028497 172 MLHERVDAVVTSNPI 186 (208)
Q Consensus 172 ~~~~gvd~i~TD~P~ 186 (208)
+.+.|||+|-+-.+.
T Consensus 250 ~a~tGvD~Isvg~lt 264 (277)
T PRK05742 250 IAETGVDYISIGAMT 264 (277)
T ss_pred HHHcCCCEEEEChhh
Confidence 999999999886543
No 234
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=58.83 E-value=31 Score=28.78 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=41.0
Q ss_pred hcCceEeecccccCHHHHHHHH-hCCCeEEEeeCCCH--------------------HHHHHHHhCCCCEEEcCChHHHH
Q 028497 131 RKAGVVGVYHPLIDEKLVRTFH-GRNKRVFAWTVDDE--------------------DSMRKMLHERVDAVVTSNPILFQ 189 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~-~~g~~v~~wtv~~~--------------------~~~~~~~~~gvd~i~TD~P~~~~ 189 (208)
-|+|++-+.-.+.--+.++.++ +.++++.+|-|.-+ +.+.-+...|+|.|+|-+...+.
T Consensus 242 EGAD~lMVKPal~YLDIi~~~k~~~~~P~~aYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~~a 321 (324)
T PF00490_consen 242 EGADILMVKPALPYLDIIRRVKERFDLPVAAYQVSGEYAMIKAAAQNGWIDEKRVVLESLLSIKRAGADIIITYFAKEAA 321 (324)
T ss_dssp TT-SEEEEESSGGGHHHHHHHHHHCTS-EEEEETHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHT-SEEEETTHHHHH
T ss_pred hCCCEEEeecchhHHHHHHHHHHhcCCCEEEEEehHHHHHHHHHHHCCCcchhhHHHHHHHHHHHcCCCEEEeecHHHHH
Confidence 5788766554454567788776 58999999987422 12333457899999999988877
Q ss_pred HHH
Q 028497 190 RVM 192 (208)
Q Consensus 190 ~~~ 192 (208)
++|
T Consensus 322 ~~L 324 (324)
T PF00490_consen 322 KWL 324 (324)
T ss_dssp HHT
T ss_pred hhC
Confidence 653
No 235
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.76 E-value=49 Score=27.25 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=37.9
Q ss_pred HHHHHHHhCC---CeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHHH
Q 028497 146 KLVRTFHGRN---KRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDIR 196 (208)
Q Consensus 146 ~~v~~~~~~g---~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~~ 196 (208)
+.++.++++. .++ .=-+++.+++..+++.|+|.|+-| .|+.+.+++...+
T Consensus 185 ~av~~~r~~~~~~~kI-eVEv~tleea~~a~~agaDiImLDnmspe~l~~av~~~~ 239 (290)
T PRK06559 185 KAIAQARAYAPFVKMV-EVEVESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLIA 239 (290)
T ss_pred HHHHHHHHhCCCCCeE-EEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhc
Confidence 4566666553 333 334588999999999999999999 7999998887544
No 236
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=58.75 E-value=46 Score=26.13 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=34.4
Q ss_pred HHHHhCCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHH
Q 028497 149 RTFHGRNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDI 195 (208)
Q Consensus 149 ~~~~~~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~ 195 (208)
+.++..++++.+- ++++.++++.+++.|+++|+.. +|+.+.++.+..
T Consensus 70 ~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~ 122 (241)
T PRK13585 70 KIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEF 122 (241)
T ss_pred HHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHh
Confidence 3456677877773 5788999999999999998876 455566665543
No 237
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=58.70 E-value=95 Score=25.00 Aligned_cols=129 Identities=11% Similarity=0.233 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhcCCcceEEEeeCH--HHHHHHHhhccCCeEEEEEEe--cC-CCc---h-h--------hhHhhhhcCc
Q 028497 72 GLAKDILSVIERTKCYNCLVWAKSD--NLVRDIMRLSSNVTAGYIIMV--DP-STG---F-R--------TNLLRIRKAG 134 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf~~--~~l~~l~~~~p~~~~~~l~~~--~~-~~~---~-~--------~~~~~~~~~~ 134 (208)
..+ ..++.+.+.+..-.++.|... +.+..+.+. ++|+.++-.. .+ ... . . ..+.+ .|-.
T Consensus 44 ~~e-~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~--~iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~-~Gh~ 119 (279)
T PF00532_consen 44 EKE-EYIELLLQRRVDGIILASSENDDEELRRLIKS--GIPVVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIK-KGHR 119 (279)
T ss_dssp HHH-HHHHHHHHTTSSEEEEESSSCTCHHHHHHHHT--TSEEEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHH-TTCC
T ss_pred HHH-HHHHHHHhcCCCEEEEecccCChHHHHHHHHc--CCCEEEEEeccCCcccCCEEEEcchHHHHHHHHHHHh-cccC
Confidence 455 677788887877787776532 456666553 6777544322 12 111 0 0 01111 2322
Q ss_pred ----eEeeccccc-C----HHHHHHHHhCCCeE---EEeeC-CCH----HHHHHHHhCCCC--EEEcCChHHHHHHHHHH
Q 028497 135 ----VVGVYHPLI-D----EKLVRTFHGRNKRV---FAWTV-DDE----DSMRKMLHERVD--AVVTSNPILFQRVMQDI 195 (208)
Q Consensus 135 ----~~~~~~~~~-~----~~~v~~~~~~g~~v---~~wtv-~~~----~~~~~~~~~gvd--~i~TD~P~~~~~~~~~~ 195 (208)
++....... . ..+.+.++++|+++ ++... .+. ..++++++.+.+ +|++.+-..+..+++..
T Consensus 120 ~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~~nd~~A~ga~~~l 199 (279)
T PF00532_consen 120 RPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFCANDMMAIGAIRAL 199 (279)
T ss_dssp STEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEESSHHHHHHHHHHH
T ss_pred CeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEEeCHHHHHHHHHHH
Confidence 222222111 1 23567889999944 44433 332 457788888866 99999999988888766
Q ss_pred HhhhhhcC-ccccC
Q 028497 196 RTQCLEEG-FSLIR 208 (208)
Q Consensus 196 ~~~~~~~~-~~~~~ 208 (208)
+ +.| ...|+
T Consensus 200 ~----~~gr~~ip~ 209 (279)
T PF00532_consen 200 R----ERGRLKIPE 209 (279)
T ss_dssp H----HTT-TCTTT
T ss_pred H----HcCCcccCh
Confidence 5 556 66553
No 238
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=58.62 E-value=1.3e+02 Score=26.62 Aligned_cols=103 Identities=13% Similarity=0.180 Sum_probs=67.8
Q ss_pred CHHHHHHHHhhccCCeEEEEEEecCC----Cc---hhh---hHhhhhcCceEeecccccC----HHHHHHHHhCCCeEE-
Q 028497 95 SDNLVRDIMRLSSNVTAGYIIMVDPS----TG---FRT---NLLRIRKAGVVGVYHPLID----EKLVRTFHGRNKRVF- 159 (208)
Q Consensus 95 ~~~~l~~l~~~~p~~~~~~l~~~~~~----~~---~~~---~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v~- 159 (208)
.++.|+.+++..|+.++..+...... .+ ... +.+...|.+++.+...+.+ ...++.+++.|..+.
T Consensus 71 pwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~ 150 (468)
T PRK12581 71 PWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQL 150 (468)
T ss_pred HHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45789999999999998766643210 11 011 1223478888776554433 345778999999853
Q ss_pred --EeeCCC-------HHHHHHHHhCCCCEEEc-C-----ChHHHHHHHHHHHh
Q 028497 160 --AWTVDD-------EDSMRKMLHERVDAVVT-S-----NPILFQRVMQDIRT 197 (208)
Q Consensus 160 --~wtv~~-------~~~~~~~~~~gvd~i~T-D-----~P~~~~~~~~~~~~ 197 (208)
.||... .+.++.+.++|++.|.- | .|..+.++++..+.
T Consensus 151 ~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~ 203 (468)
T PRK12581 151 CIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA 203 (468)
T ss_pred EEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh
Confidence 465533 13467788999998754 4 79999999888764
No 239
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=58.61 E-value=20 Score=28.86 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=28.9
Q ss_pred HHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 148 VRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 148 v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
-+.+-+.|..|..|+-+|+-..+++.+.|+..|+
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVM 163 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPMLAKHLEDIGCATVM 163 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEe
Confidence 3446689999999999999999999999988876
No 240
>PLN02623 pyruvate kinase
Probab=58.18 E-value=46 Score=30.24 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=44.7
Q ss_pred CHHHHHHHHhCCCeEEEee------CC--CH-----HHHHHHHhCCCCEEEc-------CChHHHHHHHHHHHhhhh
Q 028497 144 DEKLVRTFHGRNKRVFAWT------VD--DE-----DSMRKMLHERVDAVVT-------SNPILFQRVMQDIRTQCL 200 (208)
Q Consensus 144 ~~~~v~~~~~~g~~v~~wt------v~--~~-----~~~~~~~~~gvd~i~T-------D~P~~~~~~~~~~~~~~~ 200 (208)
-..+++.++++|+++.+-| +. .+ .++..++..|+|+|+- .||.++.+.+++.....+
T Consensus 365 qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE 441 (581)
T PLN02623 365 QEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 441 (581)
T ss_pred HHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHH
Confidence 3567888999999999877 22 22 5888999999999865 499999999987755544
No 241
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=57.83 E-value=41 Score=24.69 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHHH-hCCCCEEEcCChHHHH--HHHHHHHhhhhhcCcc
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKML-HERVDAVVTSNPILFQ--RVMQDIRTQCLEEGFS 205 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~~-~~gvd~i~TD~P~~~~--~~~~~~~~~~~~~~~~ 205 (208)
++-+.+.+.|+.+++...+..+.+..+. +.|++.|.+|..-..- +.-++.++.|.+.|..
T Consensus 57 ~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~ 119 (165)
T PF00875_consen 57 DLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIK 119 (165)
T ss_dssp HHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceE
Confidence 4456678899999999888777777665 5789999998433322 2333456677666643
No 242
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=57.30 E-value=2.1e+02 Score=28.53 Aligned_cols=103 Identities=10% Similarity=0.067 Sum_probs=67.3
Q ss_pred HHHHHHHHhhccCCeEEEEEEecCC----Cc---hhhhHh---hhhcCceEeecccccC----HHHHHHHHhCCCeE---
Q 028497 96 DNLVRDIMRLSSNVTAGYIIMVDPS----TG---FRTNLL---RIRKAGVVGVYHPLID----EKLVRTFHGRNKRV--- 158 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~~~~~----~~---~~~~~~---~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v--- 158 (208)
++-|+.+|+..|++++-.|...... .+ ....+. ...|.+.+.+...+-+ ...++.+++.|..+
T Consensus 592 werl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~ 671 (1143)
T TIGR01235 592 WERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAA 671 (1143)
T ss_pred HHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEE
Confidence 3568889998999998766543211 01 111222 3478888877655443 23477889999976
Q ss_pred EEeeC-----C----CH----HHHHHHHhCCCCEEEc-C-----ChHHHHHHHHHHHhh
Q 028497 159 FAWTV-----D----DE----DSMRKMLHERVDAVVT-S-----NPILFQRVMQDIRTQ 198 (208)
Q Consensus 159 ~~wtv-----~----~~----~~~~~~~~~gvd~i~T-D-----~P~~~~~~~~~~~~~ 198 (208)
..||. . +. +-++.+.++|+|.|.- | .|..+.++++.++..
T Consensus 672 i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~ 730 (1143)
T TIGR01235 672 ICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREK 730 (1143)
T ss_pred EEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 46773 1 22 3567778999998753 4 799999999887755
No 243
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=57.22 E-value=52 Score=25.57 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=36.8
Q ss_pred hcCceEeeccccc-CHHHHHHHHhC--CCeEEEeeCCCHHHHHHHHhCCCCEEEcCC
Q 028497 131 RKAGVVGVYHPLI-DEKLVRTFHGR--NKRVFAWTVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 131 ~~~~~~~~~~~~~-~~~~v~~~~~~--g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
.|...+.+-.+.- ..+.++.+++. ++.+.+=||-+.++.+.+++.|+++|+|-.
T Consensus 32 ~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 32 GGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCC
Confidence 4555544322221 12445555543 477888899999999999999999999973
No 244
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=56.89 E-value=96 Score=24.47 Aligned_cols=140 Identities=13% Similarity=0.159 Sum_probs=78.8
Q ss_pred CHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEE-EeeCHHHHHHHHhhc-cCCeEEEEEEecCC
Q 028497 43 TIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLV-WAKSDNLVRDIMRLS-SNVTAGYIIMVDPS 120 (208)
Q Consensus 43 tL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii-~Sf~~~~l~~l~~~~-p~~~~~~l~~~~~~ 120 (208)
.+.|+++.+++. ..+.+|+-..+. ..+++.-..+.+..+ .+.+| .=...+-++.++++. -++++-...-+.+.
T Consensus 43 ~~~~i~~~i~~~-~~vs~ev~~~~~---~~mi~eA~~l~~~~~-~nv~VKIP~T~~Gl~Ai~~L~~~Gi~vn~T~ifs~~ 117 (222)
T PRK12656 43 RIREVREIIGDE-ASIHVQVVAQDY---EGILKDAHEIRRQCG-DDVYIKVPVTPAGLAAIKTLKAEGYHITATAIYTVF 117 (222)
T ss_pred HHHHHHHHhCCC-CcEEEEEEECCH---HHHHHHHHHHHHHhC-CCEEEEeCCCHHHHHHHHHHHHCCCceEEeeeCCHH
Confidence 344444444322 268899986532 245444444433444 45555 445666666666653 46777544432222
Q ss_pred CchhhhHhhhhcCceEeeccccc-----CH-----HHHHHHHhCC--CeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHH
Q 028497 121 TGFRTNLLRIRKAGVVGVYHPLI-----DE-----KLVRTFHGRN--KRVFAWTVDDEDSMRKMLHERVDAVVTSNPILF 188 (208)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~v~~~~~~g--~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~ 188 (208)
+ .-++-..|+++++++.+-+ ++ ++.+.++..| .++.+=.+.+..++-.+...|+|.++-- |+.+
T Consensus 118 Q---a~~Aa~aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G~d~vTvp-~~vl 193 (222)
T PRK12656 118 Q---GLLAIEAGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALGAQAVTAG-PDVF 193 (222)
T ss_pred H---HHHHHHCCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcCCCEEecC-HHHH
Confidence 2 1222348889888765432 22 2333444444 4556667899999999999999987653 3444
Q ss_pred HHH
Q 028497 189 QRV 191 (208)
Q Consensus 189 ~~~ 191 (208)
.++
T Consensus 194 ~~l 196 (222)
T PRK12656 194 EAA 196 (222)
T ss_pred HHH
Confidence 443
No 245
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=56.89 E-value=1.1e+02 Score=25.15 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=37.4
Q ss_pred HHHHHHHhC--CCeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHH
Q 028497 146 KLVRTFHGR--NKRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDI 195 (208)
Q Consensus 146 ~~v~~~~~~--g~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~ 195 (208)
..++.++++ ..+ ..=-+++.+++..+++.|+|.|+-| .|+.+.++.+..
T Consensus 178 ~av~~~r~~~~~~k-IeVEv~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~ 230 (284)
T PRK06096 178 GAINQLRRHAPEKK-IVVEADTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIA 230 (284)
T ss_pred HHHHHHHHhCCCCC-EEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 456666654 334 3345679999999999999999999 788888888754
No 246
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=56.81 E-value=28 Score=27.53 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=30.2
Q ss_pred CCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHH
Q 028497 154 RNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQR 190 (208)
Q Consensus 154 ~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~ 190 (208)
...+.++.++.++.++-.++.+|||.+-+..|....+
T Consensus 112 ~~~pr~l~G~~~P~~i~~~v~~GvD~fDs~~p~~~A~ 148 (238)
T PF01702_consen 112 PDKPRYLLGVGTPEEILEAVYLGVDLFDSSYPTRLAR 148 (238)
T ss_dssp TTS-EEETTB-SHHHHHHHHHTT--EEEESHHHHHHH
T ss_pred cccceeccCCCCHHHHHHHHHcCCcEEcchHHHHHHh
Confidence 6889999999999999999999999999999988764
No 247
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=56.72 E-value=66 Score=25.03 Aligned_cols=56 Identities=11% Similarity=0.040 Sum_probs=34.4
Q ss_pred hHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 126 NLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+++...+++.+++....+.....+.....+. ..-.++++.+++.++.+.|+|++.-
T Consensus 73 ~lA~~~~adGVHlg~~d~~~~~~r~~~~~~~-~iG~S~H~~~e~~~A~~~gaDYi~l 128 (211)
T PRK03512 73 RLAIKHQAYGVHLGQEDLETADLNAIRAAGL-RLGVSTHDDMEIDVALAARPSYIAL 128 (211)
T ss_pred HHHHHcCCCEEEcChHhCCHHHHHHhcCCCC-EEEEeCCCHHHHHHHhhcCCCEEEE
Confidence 4545577777766544444333443322232 3445668888899888999999764
No 248
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=56.29 E-value=23 Score=28.96 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=38.0
Q ss_pred HHHHHHHhC-CCeE-EEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHH
Q 028497 146 KLVRTFHGR-NKRV-FAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQD 194 (208)
Q Consensus 146 ~~v~~~~~~-g~~v-~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~ 194 (208)
+.+++++.. +... .---+++.+++.++++.|+|.|+-| .|+.++++++.
T Consensus 176 ~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm~~e~~~~av~~ 228 (280)
T COG0157 176 EAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNMSPEELKEAVKL 228 (280)
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHH
Confidence 456666654 3322 4456789999999999999999999 69999998876
No 249
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=56.24 E-value=1e+02 Score=24.61 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCeEEEeeCC----CHH----HHHHHHhCCCCEEE-cC-----ChHHHHHHHHHHHhh
Q 028497 146 KLVRTFHGRNKRVFAWTVD----DED----SMRKMLHERVDAVV-TS-----NPILFQRVMQDIRTQ 198 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~----~~~----~~~~~~~~gvd~i~-TD-----~P~~~~~~~~~~~~~ 198 (208)
+.++.+++.|+.|.+-..+ +++ .++.+.++|++.|. .| .|..+.++++..+..
T Consensus 114 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 114 RLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAA 180 (259)
T ss_pred HHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 5678899999988654332 233 34556678998865 34 799999988877643
No 250
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=55.83 E-value=48 Score=26.90 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCeEEEee------C-C----CHHHHH----HHHhCCCCEEEcCChHH
Q 028497 146 KLVRTFHGRNKRVFAWT------V-D----DEDSMR----KMLHERVDAVVTSNPIL 187 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wt------v-~----~~~~~~----~~~~~gvd~i~TD~P~~ 187 (208)
+.+..+++.|+++..|. + + +++... -...+|+|.|-|++|..
T Consensus 134 ~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~ 190 (265)
T COG1830 134 QVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGD 190 (265)
T ss_pred HHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCC
Confidence 34677999999999985 2 2 122222 34589999999999953
No 251
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=55.77 E-value=67 Score=27.30 Aligned_cols=103 Identities=6% Similarity=0.057 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCcceEEEeeCH------HHHHHHHhh---ccCCeEEEEEEecCCCc-----hh--hhHhhhhcCceEe
Q 028497 74 AKDILSVIERTKCYNCLVWAKSD------NLVRDIMRL---SSNVTAGYIIMVDPSTG-----FR--TNLLRIRKAGVVG 137 (208)
Q Consensus 74 ~~~v~~~l~~~~~~~~ii~Sf~~------~~l~~l~~~---~p~~~~~~l~~~~~~~~-----~~--~~~~~~~~~~~~~ 137 (208)
....++..+++|+ +++|+|... ..+.+++++ +.+...-+.....|... .+ -+..+..|++.+-
T Consensus 16 ~~~yi~~a~~~Gf-~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl~~~~~lGi~~lR 94 (357)
T PF05913_consen 16 NKAYIEKAAKYGF-KRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDLSFFKELGIDGLR 94 (357)
T ss_dssp HHHHHHHHHCTTE-EEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBTHHHHHHT-SEEE
T ss_pred HHHHHHHHHHCCC-CEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCCEEE
Confidence 3444555666675 677888632 234444443 22222323333334221 01 1223558888888
Q ss_pred ecccccCHHHHHHHHhCCCeEEEeeCC-CHHHHHHHHhCCCC
Q 028497 138 VYHPLIDEKLVRTFHGRNKRVFAWTVD-DEDSMRKMLHERVD 178 (208)
Q Consensus 138 ~~~~~~~~~~v~~~~~~g~~v~~wtv~-~~~~~~~~~~~gvd 178 (208)
+.+.+-..+..+.-++ |+++..-... +++.+..+.+.|++
T Consensus 95 lD~Gf~~~~ia~ls~n-g~~I~LNASti~~~~l~~L~~~~~~ 135 (357)
T PF05913_consen 95 LDYGFSGEEIAKLSKN-GIKIELNASTITEEELDELIKYGAN 135 (357)
T ss_dssp ESSS-SCHHHHHHTTT--SEEEEETTT--CCHHHHHCCTT--
T ss_pred ECCCCCHHHHHHHHhC-CCEEEEECCCCChHHHHHHHHhcCC
Confidence 8888877777666666 8888777554 67788888888875
No 252
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=55.70 E-value=75 Score=26.89 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=40.8
Q ss_pred cccCHHHHHHHHhCCCeEEEeeC------CCHH--------HHHHHHhCCCCEEEcC--Ch--------HHHHHHHHHHH
Q 028497 141 PLIDEKLVRTFHGRNKRVFAWTV------DDED--------SMRKMLHERVDAVVTS--NP--------ILFQRVMQDIR 196 (208)
Q Consensus 141 ~~~~~~~v~~~~~~g~~v~~wtv------~~~~--------~~~~~~~~gvd~i~TD--~P--------~~~~~~~~~~~ 196 (208)
...+++++..+|++|++|..=+. .++. .++.+.+.|-|||--| +| +.+..++++++
T Consensus 63 ~~~~~~~~~~A~~~~v~v~~~~~~~~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr 142 (358)
T cd02875 63 GDIDDELLCYAHSKGVRLVLKGDVPLEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETT 142 (358)
T ss_pred CCCCHHHHHHHHHcCCEEEEECccCHHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHH
Confidence 45678999999999999874221 2222 2344457899999888 45 34556666666
Q ss_pred hhhhhc
Q 028497 197 TQCLEE 202 (208)
Q Consensus 197 ~~~~~~ 202 (208)
.+-...
T Consensus 143 ~~l~~~ 148 (358)
T cd02875 143 KAFKKE 148 (358)
T ss_pred HHHhhc
Confidence 555443
No 253
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.27 E-value=56 Score=25.35 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=30.5
Q ss_pred HHHHHHHhC--CCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 146 KLVRTFHGR--NKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 146 ~~v~~~~~~--g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
+.++.+++. ++.+.+=||-+.++++.+++.|++.|+|-
T Consensus 44 ~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP 83 (201)
T PRK06015 44 DAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSP 83 (201)
T ss_pred HHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECC
Confidence 445555432 56778889999999999999999999997
No 254
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=55.07 E-value=39 Score=31.58 Aligned_cols=54 Identities=11% Similarity=0.203 Sum_probs=47.2
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHH-HhCCCCEEEcC-ChHHHHHHHHHHHhh
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKM-LHERVDAVVTS-NPILFQRVMQDIRTQ 198 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~-~~~gvd~i~TD-~P~~~~~~~~~~~~~ 198 (208)
.+.++.+|+.|+++..=|.|++...++. .++|+|-+..+ -|+.=.+.+++++.+
T Consensus 543 ~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~v~AellPedK~~~V~~l~~~ 598 (713)
T COG2217 543 KEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDEVRAELLPEDKAEIVRELQAE 598 (713)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHhheccCCcHHHHHHHHHHHhc
Confidence 4679999999999999999998887776 47899999999 899999999988843
No 255
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=55.05 E-value=55 Score=27.54 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=41.7
Q ss_pred hcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCCh
Q 028497 131 RKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P 185 (208)
.+...+.+.......++++.+|..|.+|..=.+ +...++++.+.|+|+|+..=+
T Consensus 103 ~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~-~~~~A~~~~~~G~d~vI~~g~ 156 (336)
T COG2070 103 AGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI-TVREALKAERAGADAVIAQGA 156 (336)
T ss_pred CCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC-CHHHHHHHHhCCCCEEEecCC
Confidence 355555555555678999999999998877554 777999999999999997633
No 256
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=54.70 E-value=1.3e+02 Score=25.28 Aligned_cols=107 Identities=9% Similarity=0.064 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhcCCcceEEEeeCHHH-HHHHHhhccC-CeEEEEEEecCCCchhhhHhhh--h--cCceEeeccc----
Q 028497 72 GLAKDILSVIERTKCYNCLVWAKSDNL-VRDIMRLSSN-VTAGYIIMVDPSTGFRTNLLRI--R--KAGVVGVYHP---- 141 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf~~~~-l~~l~~~~p~-~~~~~l~~~~~~~~~~~~~~~~--~--~~~~~~~~~~---- 141 (208)
.....+.++.++.|-...+.- ++.+. ....|+..|. +.++.-....+. ...+..+. . ++|++.+...
T Consensus 48 ~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~~~r~~~~~~l~v~~~vg~~~~--~~~~~~~Lv~ag~~~d~i~iD~a~gh~ 124 (326)
T PRK05458 48 IIDEKIAEWLAENGYFYIMHR-FDPEARIPFIKDMHEQGLIASISVGVKDD--EYDFVDQLAAEGLTPEYITIDIAHGHS 124 (326)
T ss_pred hhHHHHHHHHHHcCCEEEEec-CCHHHHHHHHHhccccccEEEEEecCCHH--HHHHHHHHHhcCCCCCEEEEECCCCch
Confidence 566778888888874333333 56654 3344555553 222222221111 11222222 3 3488776322
Q ss_pred ccCHHHHHHHHhC--CCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 142 LIDEKLVRTFHGR--NKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 142 ~~~~~~v~~~~~~--g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
..-.++++.+++. +..|.+=.+.+.++++.+.+.|+|+|.
T Consensus 125 ~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 125 DSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEE
Confidence 2235678888765 466777678899999999999999986
No 257
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=54.49 E-value=1.5e+02 Score=25.89 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=68.2
Q ss_pred CCchhHHHHHHHHHHhcCCc-ceEEEeeCH-----HHHHHHHhhccCCeEEEEEEecCCCc--hhhhHhh---hhcCceE
Q 028497 68 SYEKGLAKDILSVIERTKCY-NCLVWAKSD-----NLVRDIMRLSSNVTAGYIIMVDPSTG--FRTNLLR---IRKAGVV 136 (208)
Q Consensus 68 ~~~~~~~~~v~~~l~~~~~~-~~ii~Sf~~-----~~l~~l~~~~p~~~~~~l~~~~~~~~--~~~~~~~---~~~~~~~ 136 (208)
+|++.++++.++...+.|+. -|+|=+.|+ .+++..++....++....+...|-.. .+-++++ ..|+|.+
T Consensus 94 hyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSI 173 (472)
T COG5016 94 HYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSI 173 (472)
T ss_pred CCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEE
Confidence 45668888888887777864 345544432 25666666555455444443334321 1233333 2677776
Q ss_pred eec--ccccCH----HHHHHHH-hCCCeEEEeeCCC----HHHHHHHHhCCCCEEEc
Q 028497 137 GVY--HPLIDE----KLVRTFH-GRNKRVFAWTVDD----EDSMRKMLHERVDAVVT 182 (208)
Q Consensus 137 ~~~--~~~~~~----~~v~~~~-~~g~~v~~wtv~~----~~~~~~~~~~gvd~i~T 182 (208)
.+- ...++| ++|+.++ ..+++|.+-|-.+ .-.+-+++..|||+|=|
T Consensus 174 ciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDT 230 (472)
T COG5016 174 CIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDT 230 (472)
T ss_pred EeecccccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcchhhh
Confidence 653 234444 5677776 4788888877554 34556667899999744
No 258
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.49 E-value=24 Score=29.16 Aligned_cols=51 Identities=8% Similarity=0.059 Sum_probs=37.8
Q ss_pred HHHHHHHhCCC-eEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHHH
Q 028497 146 KLVRTFHGRNK-RVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDIR 196 (208)
Q Consensus 146 ~~v~~~~~~g~-~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~~ 196 (208)
+.++.+++..- ....=-+++.+++..+++.|+|.|+-| .|+.+.++++..+
T Consensus 194 ~av~~~r~~~~~~kIeVEvetleea~eA~~aGaDiImLDnmspe~l~~av~~~~ 247 (294)
T PRK06978 194 AALDAAFALNAGVPVQIEVETLAQLETALAHGAQSVLLDNFTLDMMREAVRVTA 247 (294)
T ss_pred HHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhc
Confidence 55666665432 113334678999999999999999999 7999999887543
No 259
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=54.34 E-value=35 Score=29.31 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=36.0
Q ss_pred cccCHHHHHHHHhC-CCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 141 PLIDEKLVRTFHGR-NKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 141 ~~~~~~~v~~~~~~-g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
+.++.+.++++++. ++++.+=+|-+.+++..+.+.|||+|+..
T Consensus 238 ~~~tW~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 238 PSLTWEDLAFLREWTDLPIVLKGILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCCCHHHHHHHHHhcCCCEEEecCCCHHHHHHHHHCCCCEEEEc
Confidence 34566778888766 88999989999999999999999998844
No 260
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=54.13 E-value=1.1e+02 Score=24.28 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=57.4
Q ss_pred CHHHHHHHHhhccCCeEEEEEEecCC-CchhhhHh---hhhcCceEeecc-cc-cCHHHHHHHHhCCCeEEE-eeCCC-H
Q 028497 95 SDNLVRDIMRLSSNVTAGYIIMVDPS-TGFRTNLL---RIRKAGVVGVYH-PL-IDEKLVRTFHGRNKRVFA-WTVDD-E 166 (208)
Q Consensus 95 ~~~~l~~l~~~~p~~~~~~l~~~~~~-~~~~~~~~---~~~~~~~~~~~~-~~-~~~~~v~~~~~~g~~v~~-wtv~~-~ 166 (208)
..+.++.+|+.. ++|+.+....+|. .+....+. +..|++.+.+.. +. -..++++.++++|++..+ -+.++ .
T Consensus 64 ~~~~~~~vr~~~-~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~ 142 (242)
T cd04724 64 VLELVKEIRKKN-TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPD 142 (242)
T ss_pred HHHHHHHHhhcC-CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCH
Confidence 456777887653 6676543332331 11112232 347888766522 11 124678899999997765 44554 4
Q ss_pred HHHHHHHh-----------CCCCEEEcCChHHHHHHHHHHHh
Q 028497 167 DSMRKMLH-----------ERVDAVVTSNPILFQRVMQDIRT 197 (208)
Q Consensus 167 ~~~~~~~~-----------~gvd~i~TD~P~~~~~~~~~~~~ 197 (208)
+.++.+.+ .|+.|..+..+..+.+.+++.++
T Consensus 143 ~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~ 184 (242)
T cd04724 143 ERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRK 184 (242)
T ss_pred HHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHh
Confidence 56677665 34445555556666666666654
No 261
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=54.07 E-value=98 Score=24.15 Aligned_cols=90 Identities=10% Similarity=-0.023 Sum_probs=0.0
Q ss_pred EEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHH----HHHHHHhCC--CeEEEeeCC
Q 028497 91 VWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEK----LVRTFHGRN--KRVFAWTVD 164 (208)
Q Consensus 91 i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~g--~~v~~wtv~ 164 (208)
+.++....++.+++..|+.++-+-....--...........|++++.++. ..... .++.+++.| +.|-+-|..
T Consensus 39 ~~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~-~a~~~~i~~~~~~~~~~g~~~~V~llts~ 117 (216)
T PRK13306 39 LLAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVIC-AAHIPTIKAALKVAKEFNGEIQIELYGNW 117 (216)
T ss_pred HHHhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeC-CCCHHHHHHHHHHHHHcCCEEEEEECCCC
Q ss_pred CHHHHHHHHhCCCCEEE
Q 028497 165 DEDSMRKMLHERVDAVV 181 (208)
Q Consensus 165 ~~~~~~~~~~~gvd~i~ 181 (208)
+.+.++.++..|++-++
T Consensus 118 ~~~~l~~~~~~~~~~~v 134 (216)
T PRK13306 118 TWEQAQQWRDAGISQVI 134 (216)
T ss_pred CHHHHHHHHcCChhhhh
No 262
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.63 E-value=68 Score=25.40 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=38.1
Q ss_pred HHHHHHHHh-CCCeEEE-eeCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHHH
Q 028497 145 EKLVRTFHG-RNKRVFA-WTVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDIR 196 (208)
Q Consensus 145 ~~~v~~~~~-~g~~v~~-wtv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~~ 196 (208)
.++++.+.+ .-.++.+ .++.+.++++++++.|++-|+.+ +|+.+.++.+++-
T Consensus 62 ~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g 120 (232)
T PRK13586 62 EMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIG 120 (232)
T ss_pred HHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhC
Confidence 466666655 3346554 46899999999999999988754 7888888777663
No 263
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=53.50 E-value=28 Score=24.63 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=34.1
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHHHHHHHHhhhhhcCcc
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQRVMQDIRTQCLEEGFS 205 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~~~~~~~~~~~~~ 205 (208)
.....+.++|+-+..+|+-+..+ .|+--.+.|.|+.+.+.+. +.||.
T Consensus 19 ~~~~~L~eagINiRA~tiAdt~d------FGIiRmvV~~~d~A~~~Le-------e~gF~ 65 (142)
T COG4747 19 SVANKLKEAGINIRAFTIADTGD------FGIIRMVVDRPDEAHSVLE-------EAGFT 65 (142)
T ss_pred HHHHHHHHcCCceEEEEeccccC------cceEEEEcCChHHHHHHHH-------HCCcE
Confidence 34566788899888888866543 4666677788888888776 66664
No 264
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=53.36 E-value=1.5e+02 Score=25.70 Aligned_cols=86 Identities=16% Similarity=0.042 Sum_probs=50.4
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecc---c-----cc----CH--H----HHHHHHhCCCeE
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYH---P-----LI----DE--K----LVRTFHGRNKRV 158 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~----~~--~----~v~~~~~~g~~v 158 (208)
+.++++++..|++++. .. +-.+......+-..|+|++.+-+ . .. .+ . ..+.++..+++|
T Consensus 183 ~~v~~ik~~~p~~~vi--~g-~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpV 259 (404)
T PRK06843 183 ELVKKIKTKYPNLDLI--AG-NIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICI 259 (404)
T ss_pred HHHHHHHhhCCCCcEE--EE-ecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeE
Confidence 4677888888887752 22 11111101111236888764321 0 00 01 1 123345668888
Q ss_pred EEee-CCCHHHHHHHHhCCCCEEEcCCh
Q 028497 159 FAWT-VDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 159 ~~wt-v~~~~~~~~~~~~gvd~i~TD~P 185 (208)
.+=+ +.++.++.+++.+|+++|+--.+
T Consensus 260 IAdGGI~~~~Di~KALalGA~aVmvGs~ 287 (404)
T PRK06843 260 IADGGIRFSGDVVKAIAAGADSVMIGNL 287 (404)
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence 7764 78999999999999999876543
No 265
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=53.19 E-value=97 Score=23.39 Aligned_cols=127 Identities=9% Similarity=0.019 Sum_probs=70.0
Q ss_pred HHHHHHhcC--CceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEee-CH----HHHHHHHhhccCCeEEEEEEec
Q 028497 46 DALTLVSNS--VRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAK-SD----NLVRDIMRLSSNVTAGYIIMVD 118 (208)
Q Consensus 46 evL~~~~~~--~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf-~~----~~l~~l~~~~p~~~~~~l~~~~ 118 (208)
+.++.+++. +..+.+++|..+. ....++.+.+.|..-.++-.. .. +.++.+++ .+++.++... .
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~~------~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~--~g~~~~v~~~-~ 112 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTADA------GALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKK--YGKEVQVDLI-G 112 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEeccc------cHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHH--cCCeEEEEEe-C
Confidence 444444432 3578888897642 123345566777654544322 22 34455554 3677776322 2
Q ss_pred CCCchhhhH--hhhhcCceEeecc--------cccCHHHHHHHHh-CCCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 119 PSTGFRTNL--LRIRKAGVVGVYH--------PLIDEKLVRTFHG-RNKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 119 ~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~v~~~~~-~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
|.+. .+. ....+++++.+.. .....+.++.+++ .++++.+=+.-+++.+..+++.|+|+++.=
T Consensus 113 ~~t~--~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 113 VEDP--EKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGITPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred CCCH--HHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcCHHHHHHHHhcCCCEEEEe
Confidence 3221 122 1225777665421 1223456666665 567776654445889999999999998643
No 266
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=52.93 E-value=1.2e+02 Score=24.38 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=33.8
Q ss_pred HHHHHHHhC--CCeEEEeeCCC-------HHHHHHHHhCCCCEEEc-CChHHHHHHHHHHHhhhhhcCcc
Q 028497 146 KLVRTFHGR--NKRVFAWTVDD-------EDSMRKMLHERVDAVVT-SNPILFQRVMQDIRTQCLEEGFS 205 (208)
Q Consensus 146 ~~v~~~~~~--g~~v~~wtv~~-------~~~~~~~~~~gvd~i~T-D~P~~~~~~~~~~~~~~~~~~~~ 205 (208)
+.++.+++. .+++..-+.-+ +.-++.+.+.|++||+. |-|- +...+..+.|.+.|+.
T Consensus 76 ~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~---ee~~~~~~~~~~~gl~ 142 (256)
T TIGR00262 76 ELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPL---EESGDLVEAAKKHGVK 142 (256)
T ss_pred HHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCCh---HHHHHHHHHHHHCCCc
Confidence 345566643 56655444433 34577788899999555 4443 3344566666677743
No 267
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=52.80 E-value=1.3e+02 Score=25.38 Aligned_cols=82 Identities=17% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeec----------------ccccC--HHHHHHHHhCCCeE
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVY----------------HPLID--EKLVRTFHGRNKRV 158 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~--~~~v~~~~~~g~~v 158 (208)
+.++++|+..|+..+ ...+-.+.......-..|+|.+-+- .+.++ ++..+.++..|+++
T Consensus 139 ~~ik~ir~~~p~~~v---iaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~V 215 (343)
T TIGR01305 139 EFVKLVREAFPEHTI---MAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHI 215 (343)
T ss_pred HHHHHHHhhCCCCeE---EEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeE
Q ss_pred EEe-eCCCHHHHHHHHhCCCCEEE
Q 028497 159 FAW-TVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 159 ~~w-tv~~~~~~~~~~~~gvd~i~ 181 (208)
..- ++....++-+++.+|+|+++
T Consensus 216 IaDGGIr~~gDI~KALA~GAd~VM 239 (343)
T TIGR01305 216 ISDGGCTCPGDVAKAFGAGADFVM 239 (343)
T ss_pred EEcCCcCchhHHHHHHHcCCCEEE
No 268
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=52.77 E-value=1.9e+02 Score=26.54 Aligned_cols=104 Identities=10% Similarity=0.168 Sum_probs=64.5
Q ss_pred HHHHHHHHhhccCCeEEEEEEe--------cCCCchh--hhHhhhhcCceEeecccccC----HHHHHHHHhCCCeEE--
Q 028497 96 DNLVRDIMRLSSNVTAGYIIMV--------DPSTGFR--TNLLRIRKAGVVGVYHPLID----EKLVRTFHGRNKRVF-- 159 (208)
Q Consensus 96 ~~~l~~l~~~~p~~~~~~l~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v~-- 159 (208)
++.++.+++..|+.++..+... .|..-.. -+.+...|.+.+.+....-+ ...++.++++|..+.
T Consensus 63 ~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~ 142 (592)
T PRK09282 63 WERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGT 142 (592)
T ss_pred HHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEE
Confidence 4678888888888887665432 1111010 11223367887766543322 345788899999875
Q ss_pred -EeeCC---CH----HHHHHHHhCCCCEEE-cC-----ChHHHHHHHHHHHhhh
Q 028497 160 -AWTVD---DE----DSMRKMLHERVDAVV-TS-----NPILFQRVMQDIRTQC 199 (208)
Q Consensus 160 -~wtv~---~~----~~~~~~~~~gvd~i~-TD-----~P~~~~~~~~~~~~~~ 199 (208)
.||.. +. +.++.+.++|+|.|. .| .|..+.++++..+...
T Consensus 143 i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~ 196 (592)
T PRK09282 143 ISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEV 196 (592)
T ss_pred EEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhC
Confidence 34442 22 346677789999865 34 8999999988876543
No 269
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=52.77 E-value=1.4e+02 Score=24.99 Aligned_cols=84 Identities=18% Similarity=0.039 Sum_probs=50.9
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecc---c-ccC--------------HHHHHHHHhCCCeE
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYH---P-LID--------------EKLVRTFHGRNKRV 158 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~--------------~~~v~~~~~~g~~v 158 (208)
+.++++++..|++++.. . .-............|+|++.+.. . ..+ .+..+.++..+++|
T Consensus 124 ~~i~~ik~~~p~v~Vi~--G-~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpV 200 (325)
T cd00381 124 EMIKFIKKKYPNVDVIA--G-NVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPV 200 (325)
T ss_pred HHHHHHHHHCCCceEEE--C-CCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcE
Confidence 46778888778777653 2 11111101112337888875410 0 001 23344556678998
Q ss_pred EEe-eCCCHHHHHHHHhCCCCEEEcC
Q 028497 159 FAW-TVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 159 ~~w-tv~~~~~~~~~~~~gvd~i~TD 183 (208)
..= ++.+..++.+++.+|+++++--
T Consensus 201 IA~GGI~~~~di~kAla~GA~~VmiG 226 (325)
T cd00381 201 IADGGIRTSGDIVKALAAGADAVMLG 226 (325)
T ss_pred EecCCCCCHHHHHHHHHcCCCEEEec
Confidence 765 5788999999999999999873
No 270
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=52.63 E-value=90 Score=22.84 Aligned_cols=123 Identities=10% Similarity=0.030 Sum_probs=68.4
Q ss_pred ceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEeeC-------HHHHHHHHhhccCCeEEEEEEecCCCchhhhHh
Q 028497 56 RKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAKS-------DNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLL 128 (208)
Q Consensus 56 ~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf~-------~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~ 128 (208)
.++.+.+...... .......+.+++.+..-..+-... .+.++.+++..|+++++.-..... ... ....
T Consensus 58 ~~~~~~~~~~~~~---~~~~~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~-~~~-~~~~ 132 (200)
T cd04722 58 LPLGVQLAINDAA---AAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTG-ELA-AAAA 132 (200)
T ss_pred CcEEEEEccCCch---hhhhHHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCC-ccc-hhhH
Confidence 4677888765421 222222356666676444443322 456788888777788776554221 111 1112
Q ss_pred hhhcCceEeecccc-------cCH---HHHH-HHHhCCCeEE-EeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 129 RIRKAGVVGVYHPL-------IDE---KLVR-TFHGRNKRVF-AWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 129 ~~~~~~~~~~~~~~-------~~~---~~v~-~~~~~g~~v~-~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
...|++++.+.... ... ..+. ..+..++++. ..++++.+.+.++++.|+|+|...
T Consensus 133 ~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 133 EEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred HHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEec
Confidence 33677766543211 111 2222 2344566664 456888899999999999999753
No 271
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=52.13 E-value=1.5e+02 Score=25.29 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=49.2
Q ss_pred HHHHHHhhccCCeEEEEEEecCCCchhhhHh---hhhc----CceEeecc-------cccCHHHHHHHHhCCCeEEEee-
Q 028497 98 LVRDIMRLSSNVTAGYIIMVDPSTGFRTNLL---RIRK----AGVVGVYH-------PLIDEKLVRTFHGRNKRVFAWT- 162 (208)
Q Consensus 98 ~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~---~~~~----~~~~~~~~-------~~~~~~~v~~~~~~g~~v~~wt- 162 (208)
++.++++ .|++.=.++.+.+|...++..+. +... ...+-++. .-+++++++.+.+-++++++-|
T Consensus 149 al~YIa~-hPeI~eVllSGGDPL~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH 227 (369)
T COG1509 149 ALDYIAA-HPEIREVLLSGGDPLSLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTH 227 (369)
T ss_pred HHHHHHc-CchhheEEecCCCccccCHHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhccCceEEEEcc
Confidence 4556655 47777666666666543322221 1110 11121211 1345667777776667766655
Q ss_pred CCCH--------HHHHHHHhCCCCEE--------EcCChHHHHHHHHHH
Q 028497 163 VDDE--------DSMRKMLHERVDAV--------VTSNPILFQRVMQDI 195 (208)
Q Consensus 163 v~~~--------~~~~~~~~~gvd~i--------~TD~P~~~~~~~~~~ 195 (208)
+|-+ +.++++.+.|+-.. +-|+|+.+.++++++
T Consensus 228 ~NHp~Eit~e~~~A~~~L~~aGv~l~NQsVLLrGVND~~evl~~L~~~L 276 (369)
T COG1509 228 FNHPNEITPEAREACAKLRDAGVPLLNQSVLLRGVNDDPEVLKELSRAL 276 (369)
T ss_pred cCChhhcCHHHHHHHHHHHHcCceeecchheecccCCCHHHHHHHHHHH
Confidence 3322 34555556665442 456677666666654
No 272
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=51.89 E-value=1.6e+02 Score=25.53 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=40.2
Q ss_pred HhhhhcCceEeecccc--c-CHHHHHHHHhCCCeEEE--eeCCC-HHHHHHHHhCCCCEEEcC
Q 028497 127 LLRIRKAGVVGVYHPL--I-DEKLVRTFHGRNKRVFA--WTVDD-EDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 127 ~~~~~~~~~~~~~~~~--~-~~~~v~~~~~~g~~v~~--wtv~~-~~~~~~~~~~gvd~i~TD 183 (208)
.+...|+++++++... . -.+.++.++++|+.+.+ .+..+ .+.++.+.+.|+|.|.+.
T Consensus 76 ~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 76 MAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINVH 138 (430)
T ss_pred HHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE
Confidence 3345889988764321 1 13677889999999876 56655 456788889999999754
No 273
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=51.64 E-value=1.2e+02 Score=24.15 Aligned_cols=82 Identities=7% Similarity=0.033 Sum_probs=48.1
Q ss_pred EeeCHHHHHHHHhhccCCeE-EEEEEecCCCchhhhHhhhhcCceEeeccccc-C-HHHHHHHHhCCC--eEEE-eeCCC
Q 028497 92 WAKSDNLVRDIMRLSSNVTA-GYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLI-D-EKLVRTFHGRNK--RVFA-WTVDD 165 (208)
Q Consensus 92 ~Sf~~~~l~~l~~~~p~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~g~--~v~~-wtv~~ 165 (208)
++|.+..++.+++ +.++ .-|+-.+|..+. +.+.+ .|++.+.+++... . .+.++++|++|+ ++.+ -...+
T Consensus 55 itfGp~~i~~i~~---~~~~DvHLMv~~P~~~i-~~~~~-aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T 129 (228)
T PRK08091 55 FTVGAIAIKQFPT---HCFKDVHLMVRDQFEVA-KACVA-AGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPET 129 (228)
T ss_pred cccCHHHHHHhCC---CCCEEEEeccCCHHHHH-HHHHH-hCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCC
Confidence 5677888888874 2232 122333453322 33433 7999888876532 2 367899999998 6543 22333
Q ss_pred -HHHHHHHHhCCCCE
Q 028497 166 -EDSMRKMLHERVDA 179 (208)
Q Consensus 166 -~~~~~~~~~~gvd~ 179 (208)
.+.++.++.. +|.
T Consensus 130 p~~~i~~~l~~-vD~ 143 (228)
T PRK08091 130 PISLLEPYLDQ-IDL 143 (228)
T ss_pred CHHHHHHHHhh-cCE
Confidence 5667777654 553
No 274
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=51.60 E-value=1.4e+02 Score=24.96 Aligned_cols=110 Identities=6% Similarity=-0.047 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCc----ceEEEeeCH---HHHHHHHhhccCCeEEEEEEecC-CCchhhhH---hhhhcCceEeeccc
Q 028497 73 LAKDILSVIERTKCY----NCLVWAKSD---NLVRDIMRLSSNVTAGYIIMVDP-STGFRTNL---LRIRKAGVVGVYHP 141 (208)
Q Consensus 73 ~~~~v~~~l~~~~~~----~~ii~Sf~~---~~l~~l~~~~p~~~~~~l~~~~~-~~~~~~~~---~~~~~~~~~~~~~~ 141 (208)
+...++...++.|.. ..-....++ ..+..+|+..|+.++........ ..+.+..+ .+..+++.+.++.+
T Consensus 70 in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~ 149 (326)
T cd02811 70 INRNLAEAAEELGIAMGVGSQRAALEDPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLN 149 (326)
T ss_pred HHHHHHHHHHHcCCCeEecCchhhccChhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCc
Confidence 345666777777731 111111233 34567777788888755443211 01122222 23456666554332
Q ss_pred c----------cCH----HHHHHHHhC-CCeEEEee---CCCHHHHHHHHhCCCCEEEc
Q 028497 142 L----------IDE----KLVRTFHGR-NKRVFAWT---VDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 142 ~----------~~~----~~v~~~~~~-g~~v~~wt---v~~~~~~~~~~~~gvd~i~T 182 (208)
. -+. +.++.+.+. .++|.+=. ..+.+.++.+.+.|||+|..
T Consensus 150 ~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~v 208 (326)
T cd02811 150 PLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDV 208 (326)
T ss_pred chHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 1 111 346666665 88888733 36789999999999999983
No 275
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.59 E-value=50 Score=25.60 Aligned_cols=36 Identities=28% Similarity=0.544 Sum_probs=17.4
Q ss_pred HHHHHhCCCeEEEeeCCCH----HHHHHHHhCCCCEEEcC
Q 028497 148 VRTFHGRNKRVFAWTVDDE----DSMRKMLHERVDAVVTS 183 (208)
Q Consensus 148 v~~~~~~g~~v~~wtv~~~----~~~~~~~~~gvd~i~TD 183 (208)
.+.+++.|+.+.+...++. +.++.++..++|||+..
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~ 61 (266)
T cd06278 22 SRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVT 61 (266)
T ss_pred HHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEe
Confidence 3455556665554443321 22344455566666553
No 276
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=51.36 E-value=37 Score=29.03 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=39.6
Q ss_pred hhcCceEeeccc---------ccCH-HHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 130 IRKAGVVGVYHP---------LIDE-KLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 130 ~~~~~~~~~~~~---------~~~~-~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
..|++++.++.. ..++ .+.+..+..+++|.+=.+.+.+++.++++.|+|+|+
T Consensus 153 eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 153 KAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred HCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 478888776521 1223 456677888999987568889999999999999997
No 277
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.20 E-value=82 Score=25.77 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=37.3
Q ss_pred HHHHHHHhCC--CeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHHH
Q 028497 146 KLVRTFHGRN--KRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDIR 196 (208)
Q Consensus 146 ~~v~~~~~~g--~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~~ 196 (208)
..++.++++. .+ ..=-+++.+++..+++.|+|.|+-| .|+.+.+++...+
T Consensus 171 ~av~~~r~~~~~~k-IeVEv~~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~ 224 (278)
T PRK08385 171 EAIRRAKEFSVYKV-VEVEVESLEDALKAAKAGADIIMLDNMTPEEIREVIEALK 224 (278)
T ss_pred HHHHHHHHhCCCCc-EEEEeCCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHH
Confidence 3456666654 33 3334689999999999999999999 6788888877654
No 278
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=51.09 E-value=34 Score=26.69 Aligned_cols=36 Identities=11% Similarity=0.271 Sum_probs=15.7
Q ss_pred HHHHHHhCCCeEEEeeC-CCHH----HHHHHHhCCCCEEEc
Q 028497 147 LVRTFHGRNKRVFAWTV-DDED----SMRKMLHERVDAVVT 182 (208)
Q Consensus 147 ~v~~~~~~g~~v~~wtv-~~~~----~~~~~~~~gvd~i~T 182 (208)
+.+.+.+.|+.+.+... ++++ .++.+...++||||.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi 61 (265)
T cd06299 21 IQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIV 61 (265)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 33444555555544322 1221 233444555555554
No 279
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=50.83 E-value=1.5e+02 Score=25.72 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=40.8
Q ss_pred hhhcCceEe-ecccc-cCHHHHHHHHhCCCeEEEeeCCCHHHH----HHHHhC---CCCEEEcCChHHHHHHH
Q 028497 129 RIRKAGVVG-VYHPL-IDEKLVRTFHGRNKRVFAWTVDDEDSM----RKMLHE---RVDAVVTSNPILFQRVM 192 (208)
Q Consensus 129 ~~~~~~~~~-~~~~~-~~~~~v~~~~~~g~~v~~wtv~~~~~~----~~~~~~---gvd~i~TD~P~~~~~~~ 192 (208)
+..|++... ...++ ..++....+.+.|++|+.|--.+.+++ ++.++. +.+.|+ |.=..+...+
T Consensus 57 ~~~GA~v~~~~~np~stqd~vaa~l~~~gi~v~a~~~~~~~~y~~~~~~~l~~~~~~p~~i~-DdGg~~~~~~ 128 (413)
T cd00401 57 VALGAEVRWSSCNIFSTQDHAAAAIAAAGIPVFAWKGETLEEYWWCIEQALKFPDGEPNMIL-DDGGDLTLLI 128 (413)
T ss_pred HHcCCEEEEEcCCCccchHHHHHHHHhcCceEEEEcCCCHHHHHHHHHHHHhccCCCCcEEE-ecchHHHHHH
Confidence 557887543 23333 446778889999999999988777766 444555 666655 5444444443
No 280
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=50.53 E-value=84 Score=29.23 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHH-HhCCCCEEEcC-ChHHHHHHHHHHHhh
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKM-LHERVDAVVTS-NPILFQRVMQDIRTQ 198 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~-~~~gvd~i~TD-~P~~~~~~~~~~~~~ 198 (208)
++.++++++.|+++.+-|.++....++. .++|++.+..+ .|+.=.+++++++++
T Consensus 452 ~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~~PedK~~~v~~lq~~ 507 (675)
T TIGR01497 452 KERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEATPEDKIALIRQEQAE 507 (675)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCCCHHHHHHHHHHHHHc
Confidence 4679999999999999999887665554 57899988888 588877888877643
No 281
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.53 E-value=94 Score=24.35 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=45.6
Q ss_pred CceEeecccccCHHHHHHHHhCCCe--EEEeeCCCHHHHHHHHhCC---CCEEEcCChHHHHHHHHHHHhhhh
Q 028497 133 AGVVGVYHPLIDEKLVRTFHGRNKR--VFAWTVDDEDSMRKMLHER---VDAVVTSNPILFQRVMQDIRTQCL 200 (208)
Q Consensus 133 ~~~~~~~~~~~~~~~v~~~~~~g~~--v~~wtv~~~~~~~~~~~~g---vd~i~TD~P~~~~~~~~~~~~~~~ 200 (208)
++.+...........++.++++|+. +.+.+.+...+...++..| +++.+...|......+......+.
T Consensus 186 ~~ai~~~~d~~a~g~~~al~~~g~~~~~~ivg~d~~~~~~~~i~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~ 258 (274)
T cd06311 186 IDAVWAHDDDMAVGVLAAIKQAGRTDIKFVVGGAGSKDMIKMIMDGDPLIPADVLYPPSMIASAIDLTVALFQ 258 (274)
T ss_pred cCEEEECCCcHHHHHHHHHHHcCCCCCceEEEeCCCHHHHHHHHCCCCceeEEEecCHHHHHHHHHHHHHHHc
Confidence 4444444444445778889999874 6677777666666777777 788888889877766655443333
No 282
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=50.13 E-value=92 Score=22.27 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCC-e--EEEeeC--CC----HHHHHHHHhCCCCEEEcC
Q 028497 145 EKLVRTFHGRNK-R--VFAWTV--DD----EDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 145 ~~~v~~~~~~g~-~--v~~wtv--~~----~~~~~~~~~~gvd~i~TD 183 (208)
+++++.++++|+ . +++=+. -. +++..++.++|++.+++-
T Consensus 68 ~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~p 115 (128)
T cd02072 68 KGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAP 115 (128)
T ss_pred HHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECc
Confidence 466777777776 3 333332 12 334577999999999985
No 283
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=50.01 E-value=1.7e+02 Score=25.54 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=27.1
Q ss_pred cccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCE-----EEcCCh
Q 028497 141 PLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDA-----VVTSNP 185 (208)
Q Consensus 141 ~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~-----i~TD~P 185 (208)
+..+.+.++++.++|+.+.+ ++++.+..+..+.+..+ |.||++
T Consensus 131 pcK~~s~IkyAa~~gV~~~t--fDne~el~kv~~~hP~a~llLrIatdds 178 (448)
T KOG0622|consen 131 PCKQVSQIKYAAKHGVSVMT--FDNEEELEKVAKSHPNANLLLRIATDDS 178 (448)
T ss_pred CCccHHHHHHHHHcCCeEEe--ecCHHHHHHHHHhCCCceEEEEEccCCC
Confidence 34456667777777776554 66777777666655443 566665
No 284
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=49.70 E-value=1.9e+02 Score=25.84 Aligned_cols=107 Identities=9% Similarity=0.010 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCCcceEEEeeC------HHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeec--c----
Q 028497 73 LAKDILSVIERTKCYNCLVWAKS------DNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVY--H---- 140 (208)
Q Consensus 73 ~~~~v~~~l~~~~~~~~ii~Sf~------~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~---- 140 (208)
..+.+.+++ +.|..-.++=+.+ .+.++++|+.+|+.++.. . +-.+......+-..|+|++.+- .
T Consensus 249 ~~~r~~~l~-~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~--g-~v~t~e~a~~a~~aGaD~i~vg~g~G~~~ 324 (505)
T PLN02274 249 DKERLEHLV-KAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIG--G-NVVTMYQAQNLIQAGVDGLRVGMGSGSIC 324 (505)
T ss_pred HHHHHHHHH-HcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEE--e-cCCCHHHHHHHHHcCcCEEEECCCCCccc
Confidence 344554444 4464333343322 156888888888776631 1 1111110111223788877321 0
Q ss_pred ----------cccCH--HHHHHHHhCCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC
Q 028497 141 ----------PLIDE--KLVRTFHGRNKRVFAW-TVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 141 ----------~~~~~--~~v~~~~~~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD 183 (208)
+..+. .+-+.++..+++|.+= ++.+..++.+++.+|+++++--
T Consensus 325 ~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 325 TTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred cCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 11111 2333345668888776 5789999999999999998754
No 285
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=49.69 E-value=1.4e+02 Score=24.31 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=40.0
Q ss_pred hhhhcCceEe-ecccccC-HHHHHHHHhCCCeEEEeeCCCHHHHHHHHh--------CCCCEEEcCChHHHHHH
Q 028497 128 LRIRKAGVVG-VYHPLID-EKLVRTFHGRNKRVFAWTVDDEDSMRKMLH--------ERVDAVVTSNPILFQRV 191 (208)
Q Consensus 128 ~~~~~~~~~~-~~~~~~~-~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~--------~gvd~i~TD~P~~~~~~ 191 (208)
.+..|++... ...++-| .+....+.+.|+.|+.|--.+.+++.+.+. .+++.|+-|--+...-+
T Consensus 63 L~a~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~get~eey~~~i~~~L~~~~~~~P~~iiDDG~Dl~~~l 136 (268)
T PF05221_consen 63 LKALGAEVRWTGSNPLSTQDDVAAALAEEGIPVFAWKGETDEEYWWCIEKALSWEDDHGPNLIIDDGGDLVNLL 136 (268)
T ss_dssp HHHTTEEEEEEESSTTT--HHHHHHHHHTTEEEEE-TT--HHHHHHHHHHCHSESTTCE-SEEEESSSHHHHHH
T ss_pred HHHcCCeEEEecCCCcccchHHHHHhccCCceEEEeCCCCHHHHHHHHHHHhcCCCCCCcceeecchHHHHHHH
Confidence 3567887543 2333333 566777889999999998888887766543 45778888876665533
No 286
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=49.62 E-value=55 Score=25.21 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=51.4
Q ss_pred eCHHHHHHHHhhccCCeE-EEEEEecCC--Cch---hhhHh--hhhcCceEeecccc-----cCHHHHHHHHhCCCeEEE
Q 028497 94 KSDNLVRDIMRLSSNVTA-GYIIMVDPS--TGF---RTNLL--RIRKAGVVGVYHPL-----IDEKLVRTFHGRNKRVFA 160 (208)
Q Consensus 94 f~~~~l~~l~~~~p~~~~-~~l~~~~~~--~~~---~~~~~--~~~~~~~~~~~~~~-----~~~~~v~~~~~~g~~v~~ 160 (208)
...+.++.+|+. -++|+ |+.-...+. .+. ..+.. -..|++++++.... --.++++.+|.++ .+..
T Consensus 19 ~~~~dI~aik~~-v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~-~l~M 96 (192)
T PF04131_consen 19 NGVEDIRAIKKA-VDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY-QLVM 96 (192)
T ss_dssp ESHHHHHHHHTT-B-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT-SEEE
T ss_pred CCHHHHHHHHHh-cCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC-cEEe
Confidence 466778888886 46775 544332221 111 12221 12789988875432 2257899999999 5555
Q ss_pred eeCCCHHHHHHHHhCCCCEEEc
Q 028497 161 WTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 161 wtv~~~~~~~~~~~~gvd~i~T 182 (208)
=-+.+.++...+.++|+|.|-|
T Consensus 97 ADist~ee~~~A~~~G~D~I~T 118 (192)
T PF04131_consen 97 ADISTLEEAINAAELGFDIIGT 118 (192)
T ss_dssp EE-SSHHHHHHHHHTT-SEEE-
T ss_pred eecCCHHHHHHHHHcCCCEEEc
Confidence 5668999999999999999976
No 287
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=49.53 E-value=43 Score=26.57 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=34.3
Q ss_pred hhhcCceEeecc-c--ccC--HHHHHHHHhC-CCeEEEe-eCCCHHHHHHHHhCCCCEEEcCCh
Q 028497 129 RIRKAGVVGVYH-P--LID--EKLVRTFHGR-NKRVFAW-TVDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 129 ~~~~~~~~~~~~-~--~~~--~~~v~~~~~~-g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD~P 185 (208)
+..|..++..++ + .-. +.+++..+.. +.++++= ++++.++++.+.+.|+|.|.+-+.
T Consensus 150 ~~~g~~~iYLEaGSGa~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~ 213 (230)
T PF01884_consen 150 EYLGMPIIYLEAGSGAYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNA 213 (230)
T ss_dssp HHTT-SEEEEE--TTSSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCH
T ss_pred HHhCCCEEEEEeCCCCCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCE
Confidence 346777777666 2 222 3444444433 4444443 589999999999999999999753
No 288
>PRK07695 transcriptional regulator TenI; Provisional
Probab=49.50 E-value=1e+02 Score=23.44 Aligned_cols=57 Identities=14% Similarity=0.010 Sum_probs=0.0
Q ss_pred hHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCC
Q 028497 126 NLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
++....+++.++..........++... .+..+.+ ++++.++...+.+.|+|.|+...
T Consensus 67 ~la~~~~~~gvHl~~~~~~~~~~r~~~-~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~ 123 (201)
T PRK07695 67 DIALLLNIHRVQLGYRSFSVRSVREKF-PYLHVGY-SVHSLEEAIQAEKNGADYVVYGH 123 (201)
T ss_pred HHHHHcCCCEEEeCcccCCHHHHHHhC-CCCEEEE-eCCCHHHHHHHHHcCCCEEEECC
No 289
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=49.29 E-value=80 Score=24.56 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=34.6
Q ss_pred HHHHHHHHh-CCCeEEE-eeCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHH
Q 028497 145 EKLVRTFHG-RNKRVFA-WTVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDI 195 (208)
Q Consensus 145 ~~~v~~~~~-~g~~v~~-wtv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~ 195 (208)
.+.++.+.+ -++++.+ .++.+.+++++++..|+++|+.. .|..+.++.+++
T Consensus 63 ~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~ 120 (233)
T PRK00748 63 LELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKF 120 (233)
T ss_pred HHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHh
Confidence 445554433 4666654 46788899999999999998877 455666655544
No 290
>PLN02494 adenosylhomocysteinase
Probab=49.12 E-value=1.6e+02 Score=26.23 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=48.7
Q ss_pred CCeEEEEEEecCCCchhhhHhhhhcCceE-eecccccC-HHHHHHHHhCCCeEEEeeCCCHHHHHH----HHhCC----C
Q 028497 108 NVTAGYIIMVDPSTGFRTNLLRIRKAGVV-GVYHPLID-EKLVRTFHGRNKRVFAWTVDDEDSMRK----MLHER----V 177 (208)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~v~~~~~~g~~v~~wtv~~~~~~~~----~~~~g----v 177 (208)
.++++...-..+.+.......+..|++.. ....++-| ......+...|++|+.|.-.+.+++.+ .++++ +
T Consensus 46 G~~i~~~lHl~~kTa~L~~tL~~~GA~v~~~~~Np~sTqd~vaaal~~~gi~vfa~~g~~~~ey~~~~~~~l~~~~~~~p 125 (477)
T PLN02494 46 GARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGP 125 (477)
T ss_pred CCEEEEEEechHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHHHHhCCceEEEecCCCHHHHHHHHHHHHcCCCCCCC
Confidence 56665444322222111222355788743 22333434 456677888999999999888776544 44555 7
Q ss_pred CEEEcCChHHHHHH
Q 028497 178 DAVVTSNPILFQRV 191 (208)
Q Consensus 178 d~i~TD~P~~~~~~ 191 (208)
+.|+=|--+....+
T Consensus 126 ~~i~DDG~dl~~~~ 139 (477)
T PLN02494 126 DLIVDDGGDATLLI 139 (477)
T ss_pred CEEEeCCchHHHHH
Confidence 87777766554433
No 291
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=49.06 E-value=1.2e+02 Score=23.44 Aligned_cols=107 Identities=11% Similarity=0.044 Sum_probs=59.7
Q ss_pred HHHHHHHhcCCcceEEEee---CHHHHHHHHhhccCCeEEEEEEe-------cCC----CchhhhHh---hhhcCceEee
Q 028497 76 DILSVIERTKCYNCLVWAK---SDNLVRDIMRLSSNVTAGYIIMV-------DPS----TGFRTNLL---RIRKAGVVGV 138 (208)
Q Consensus 76 ~v~~~l~~~~~~~~ii~Sf---~~~~l~~l~~~~p~~~~~~l~~~-------~~~----~~~~~~~~---~~~~~~~~~~ 138 (208)
.+.+++ +.|....++-+. +++.++.+.+..+.-++.+.... ..+ .....++. ...|++.+.+
T Consensus 87 ~~~~~~-~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii 165 (234)
T cd04732 87 DIERLL-DLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIY 165 (234)
T ss_pred HHHHHH-HcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEE
Confidence 344444 356545555442 56677777776654232221110 000 11112222 2356776544
Q ss_pred cc-------cccCHHHHHHHHhC-CCeEEEe-eCCCHHHHHHHHhCCCCEEEcC
Q 028497 139 YH-------PLIDEKLVRTFHGR-NKRVFAW-TVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 139 ~~-------~~~~~~~v~~~~~~-g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD 183 (208)
.. .-.+.++++.+.+. ++++.+- ++++.+++.++++.|+++++.-
T Consensus 166 ~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 166 TDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVG 219 (234)
T ss_pred EeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEEe
Confidence 32 12345677776654 7887765 4789999999999999999864
No 292
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=48.90 E-value=1.3e+02 Score=26.34 Aligned_cols=103 Identities=14% Similarity=0.044 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCcceEE-Ee-----eCHHHHHHHHhhccCCeEEEEEEecCCCch-hhhHhhhhcCceEeec--------
Q 028497 75 KDILSVIERTKCYNCLV-WA-----KSDNLVRDIMRLSSNVTAGYIIMVDPSTGF-RTNLLRIRKAGVVGVY-------- 139 (208)
Q Consensus 75 ~~v~~~l~~~~~~~~ii-~S-----f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-------- 139 (208)
+.-++++.+.|..-.++ +| |..+.++++|+.+|+.++. ..+--+.. .+++.. .|+|.+.+-
T Consensus 253 K~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~Vi---aGNVVT~~qa~nLI~-aGaDgLrVGMGsGSiCi 328 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQII---AGNVVTKEQAANLIA-AGADGLRVGMGSGSICI 328 (503)
T ss_pred hHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceee---ccceeeHHHHHHHHH-ccCceeEeccccCceee
Confidence 44456666667544444 33 1246789999999998862 22211111 123333 455544321
Q ss_pred --------ccccC--HHHHHHHHhCCCeEEEee-CCCHHHHHHHHhCCCCEEE
Q 028497 140 --------HPLID--EKLVRTFHGRNKRVFAWT-VDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 140 --------~~~~~--~~~v~~~~~~g~~v~~wt-v~~~~~~~~~~~~gvd~i~ 181 (208)
.+..+ -+..+.++..|+++..-+ +.+...+-+++.+|++.++
T Consensus 329 Tqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVM 381 (503)
T KOG2550|consen 329 TQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVM 381 (503)
T ss_pred eceeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhhe
Confidence 22222 245788999999999874 6677888899999987654
No 293
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.77 E-value=71 Score=24.94 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=28.7
Q ss_pred HHHHHHHh-C----CCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 146 KLVRTFHG-R----NKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 146 ~~v~~~~~-~----g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
+.++.+++ . ++.+.+=||-+.++.+.+++.|+++|+|=
T Consensus 53 ~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP 95 (213)
T PRK06552 53 EVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSP 95 (213)
T ss_pred HHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECC
Confidence 34555543 2 36778888888999999999999999876
No 294
>KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair]
Probab=48.72 E-value=21 Score=31.70 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHHHhC-CCCEEEcCChHHHH
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKMLHE-RVDAVVTSNPILFQ 189 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~-gvd~i~TD~P~~~~ 189 (208)
..++++++.+|+...|--....+++.++.+. +|++|||.+-+++.
T Consensus 131 ~~lI~~~r~~nVe~IVAPyEADAQlayL~~~~~i~~IITEDSDLl~ 176 (556)
T KOG2518|consen 131 HKLIQYLRSQNVEYIVAPYEADAQLAYLEREGIVDAIITEDSDLLV 176 (556)
T ss_pred HHHHHHHHHcCCceEecCccccchhHHHHhcCcceEEEeccccccc
Confidence 3468899999999888777777788888765 59999999877654
No 295
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=48.64 E-value=38 Score=28.39 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=37.9
Q ss_pred HHHHHHHhC---CCeEEEeeCCCHHHHHHHHhCCCCEEEc-----------CChHHHHHHHH
Q 028497 146 KLVRTFHGR---NKRVFAWTVDDEDSMRKMLHERVDAVVT-----------SNPILFQRVMQ 193 (208)
Q Consensus 146 ~~v~~~~~~---g~~v~~wtv~~~~~~~~~~~~gvd~i~T-----------D~P~~~~~~~~ 193 (208)
+.++.++.. |+.|.+|+.+|....+++.++|+-.|.- -+|+.++..+.
T Consensus 185 ~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e 246 (326)
T PRK11840 185 ETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVE 246 (326)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHH
Confidence 567777766 9999999999999999999999965554 26776666554
No 296
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=48.59 E-value=53 Score=25.38 Aligned_cols=10 Identities=20% Similarity=0.069 Sum_probs=4.1
Q ss_pred HHhCCCCEEE
Q 028497 172 MLHERVDAVV 181 (208)
Q Consensus 172 ~~~~gvd~i~ 181 (208)
+.+.||.-++
T Consensus 90 a~~agVk~~v 99 (233)
T PF05368_consen 90 AKAAGVKHFV 99 (233)
T ss_dssp HHHHT-SEEE
T ss_pred hhccccceEE
Confidence 3344555444
No 297
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=48.46 E-value=60 Score=22.30 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCC---eEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHH
Q 028497 145 EKLVRTFHGRNK---RVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQR 190 (208)
Q Consensus 145 ~~~v~~~~~~g~---~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~ 190 (208)
.++++.+++.+. .+++-+.--....+.+...|+|+++++..+.+..
T Consensus 68 ~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~~~~~~~~ 116 (119)
T cd02067 68 KEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFGPATEAVEV 116 (119)
T ss_pred HHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEECCHHHHHHH
Confidence 455666676654 3344333222234578899999999998755443
No 298
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=48.36 E-value=1.5e+02 Score=24.09 Aligned_cols=79 Identities=11% Similarity=0.007 Sum_probs=52.0
Q ss_pred HHHHHHhhcc-CCeEEEEEEecCCCchhhhHh--hhhcCceEeecccccCHHHHHHHHh-C--CCeEEEeeCCCHHHHHH
Q 028497 98 LVRDIMRLSS-NVTAGYIIMVDPSTGFRTNLL--RIRKAGVVGVYHPLIDEKLVRTFHG-R--NKRVFAWTVDDEDSMRK 171 (208)
Q Consensus 98 ~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~-~--g~~v~~wtv~~~~~~~~ 171 (208)
.+..+|+..| +.++++-... . +++. ...|+|++.... ++++.++++.+ . .+++.+=+-=+.+.+..
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s-~-----eea~~A~~~gaDyI~ld~--~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~ 242 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVET-L-----EQLKEALEAGADIIMLDN--MSPEELREAVALLKGRVLLEASGGITLENIRA 242 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECC-H-----HHHHHHHHcCCCEEEECC--cCHHHHHHHHHHcCCCCcEEEECCCCHHHHHH
Confidence 5677888766 5667655532 1 1221 237888776533 34666666554 2 47887776668889999
Q ss_pred HHhCCCCEEEcCC
Q 028497 172 MLHERVDAVVTSN 184 (208)
Q Consensus 172 ~~~~gvd~i~TD~ 184 (208)
+.+.|||+|-+=.
T Consensus 243 ~a~~Gvd~Iav~s 255 (268)
T cd01572 243 YAETGVDYISVGA 255 (268)
T ss_pred HHHcCCCEEEEEe
Confidence 9999999997643
No 299
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=48.18 E-value=1.7e+02 Score=24.75 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=14.8
Q ss_pred CHHHHHHHHhCCCCEEEcCChHHHHHHH
Q 028497 165 DEDSMRKMLHERVDAVVTSNPILFQRVM 192 (208)
Q Consensus 165 ~~~~~~~~~~~gvd~i~TD~P~~~~~~~ 192 (208)
++++++.+++.|+ .+..|.+.++.++.
T Consensus 89 ~~~~l~~a~~~g~-~i~ids~~el~~l~ 115 (379)
T cd06841 89 SKEELEKALEEGA-LINIDSFDELERIL 115 (379)
T ss_pred CHHHHHHHHHCCC-EEEECCHHHHHHHH
Confidence 4455556666665 45555555555443
No 300
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=47.78 E-value=1.2e+02 Score=22.76 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=35.2
Q ss_pred CcCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEeeCHHH
Q 028497 39 QVITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAKSDNL 98 (208)
Q Consensus 39 ~~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf~~~~ 98 (208)
++++.|.++--.+.-. . ||+=....++ +...+.+..++.++|..=+-++|-|++.
T Consensus 79 ~P~a~l~~vA~~lG~g--V--iei~~~~~~~-pgi~A~V~~~iak~gi~Irqi~~~dpe~ 133 (167)
T COG2150 79 EPVASLADVAPLLGLG--V--IEIYPEDARY-PGILAGVASLIAKRGISIRQIISEDPEL 133 (167)
T ss_pred cchhhHHHHHHhcCCe--E--EEEEeccCCC-ccHHHHHHHHHHHcCceEEEEecCCccc
Confidence 6677777766655332 2 3333322223 3788899999999997555677778764
No 301
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=47.77 E-value=36 Score=27.15 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=40.6
Q ss_pred HHHHHH-HHhCCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHHHhhh
Q 028497 145 EKLVRT-FHGRNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDIRTQC 199 (208)
Q Consensus 145 ~~~v~~-~~~~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~~~~~ 199 (208)
.+.+++ +..--+++.|= ++.+.+++++++..|+|-|-.| +|+++.+.-+++-.||
T Consensus 63 ~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQc 124 (256)
T COG0107 63 LDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQC 124 (256)
T ss_pred HHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCce
Confidence 344443 44555666554 4789999999999999999988 7787777777776666
No 302
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=47.75 E-value=57 Score=27.63 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=37.4
Q ss_pred hcCceEeeccc--------ccC--HHHHHHHHhCCCeEEEeeC------CC-------HHH----HHHHHhCCCCEEEcC
Q 028497 131 RKAGVVGVYHP--------LID--EKLVRTFHGRNKRVFAWTV------DD-------EDS----MRKMLHERVDAVVTS 183 (208)
Q Consensus 131 ~~~~~~~~~~~--------~~~--~~~v~~~~~~g~~v~~wtv------~~-------~~~----~~~~~~~gvd~i~TD 183 (208)
.|++.+++... .+. ..+++.+++.|+++.+|.. .+ ++- .+-..++|+|.|=|+
T Consensus 158 LGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~ 237 (348)
T PRK09250 158 LGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQK 237 (348)
T ss_pred CCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEec
Confidence 77887764321 111 2456789999999999862 11 122 233458999999999
Q ss_pred ChHH
Q 028497 184 NPIL 187 (208)
Q Consensus 184 ~P~~ 187 (208)
+|..
T Consensus 238 yp~~ 241 (348)
T PRK09250 238 LPTN 241 (348)
T ss_pred CCCC
Confidence 9953
No 303
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=47.75 E-value=33 Score=27.32 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=29.4
Q ss_pred HHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 148 VRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 148 v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
.+.+-+.|..|..||-+|+-..+++.+.|+..|+
T Consensus 123 ae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavM 156 (262)
T COG2022 123 AEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVM 156 (262)
T ss_pred HHHHHhCCCEEeeccCCCHHHHHHHHhcCceEec
Confidence 4456789999999999999999999999988876
No 304
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=47.71 E-value=63 Score=26.77 Aligned_cols=38 Identities=13% Similarity=0.385 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHHH-hCCCC----EEEcC
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKML-HERVD----AVVTS 183 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~~-~~gvd----~i~TD 183 (208)
+.++.++++|+++.+||-...+.+...+ ..|.+ .|+++
T Consensus 153 EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~ 195 (301)
T TIGR01684 153 DSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISG 195 (301)
T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEEC
Confidence 5688899999999999987766665544 56776 56655
No 305
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=47.38 E-value=81 Score=25.04 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHH----HHHHHHhCCCCEE
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDED----SMRKMLHERVDAV 180 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~----~~~~~~~~gvd~i 180 (208)
.++++.++++|++|+..|-.++. ..+.+.+.|.++.
T Consensus 126 l~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~ 165 (229)
T TIGR01675 126 LKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW 165 (229)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc
Confidence 46789999999999999988753 3577778898864
No 306
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=47.17 E-value=1.9e+02 Score=25.08 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=46.5
Q ss_pred CCeEEEEEEecCCCchhhhHhhhhcCceEe-ecccc-cCHHHHHHHHhCCCeEEEeeCCCHHHHHH----HHhCCCCEEE
Q 028497 108 NVTAGYIIMVDPSTGFRTNLLRIRKAGVVG-VYHPL-IDEKLVRTFHGRNKRVFAWTVDDEDSMRK----MLHERVDAVV 181 (208)
Q Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~v~~~~~~g~~v~~wtv~~~~~~~~----~~~~gvd~i~ 181 (208)
.++++...-..+.+.......+..|++... ...++ ..++....+.+.|++|+.|--.+.+++.+ .++...+.|+
T Consensus 32 G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~p~~ii 111 (406)
T TIGR00936 32 GARIAACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAWRGETNEEYYWAIEQVLDHEPNIII 111 (406)
T ss_pred CCEEEEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEEEecCCCHHHHHHHHHHHhcCCCCEEE
Confidence 466654443222221111222457887543 23333 45677888999999999998777766544 4456677666
Q ss_pred cCChHH
Q 028497 182 TSNPIL 187 (208)
Q Consensus 182 TD~P~~ 187 (208)
-|=-+.
T Consensus 112 DdGgdl 117 (406)
T TIGR00936 112 DDGADL 117 (406)
T ss_pred ecccHH
Confidence 554333
No 307
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=46.87 E-value=1.7e+02 Score=24.26 Aligned_cols=103 Identities=13% Similarity=0.067 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCcceEEEee-CH-HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeecc-------c-ccC
Q 028497 75 KDILSVIERTKCYNCLVWAK-SD-NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYH-------P-LID 144 (208)
Q Consensus 75 ~~v~~~l~~~~~~~~ii~Sf-~~-~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~ 144 (208)
...++++.+.+. +.+.+++ .+ +.++++++. .+++...... ......+...|+|.+.++. . ..+
T Consensus 77 ~~~~~~~~~~~v-~~v~~~~g~p~~~i~~lk~~--g~~v~~~v~s----~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~ 149 (307)
T TIGR03151 77 DELVDLVIEEKV-PVVTTGAGNPGKYIPRLKEN--GVKVIPVVAS----VALAKRMEKAGADAVIAEGMESGGHIGELTT 149 (307)
T ss_pred HHHHHHHHhCCC-CEEEEcCCCcHHHHHHHHHc--CCEEEEEcCC----HHHHHHHHHcCCCEEEEECcccCCCCCCCcH
Confidence 345566656553 4444555 23 467788764 4555322211 1111222347888876421 1 123
Q ss_pred HHHHHHHHhC-CCeEEEee-CCCHHHHHHHHhCCCCEEEcCC
Q 028497 145 EKLVRTFHGR-NKRVFAWT-VDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 145 ~~~v~~~~~~-g~~v~~wt-v~~~~~~~~~~~~gvd~i~TD~ 184 (208)
-.+++.+.+. +++|.+-+ +.+..++..++.+|+++|...-
T Consensus 150 ~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 150 MALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecch
Confidence 4566666554 68888774 8899999999999999998764
No 308
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=46.73 E-value=1.4e+02 Score=23.24 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=15.6
Q ss_pred HHHHHHhCCCCEEEcC----ChHHHHHHHH
Q 028497 168 SMRKMLHERVDAVVTS----NPILFQRVMQ 193 (208)
Q Consensus 168 ~~~~~~~~gvd~i~TD----~P~~~~~~~~ 193 (208)
.+..+.++||+.+--| .++.+.++++
T Consensus 161 ~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~ 190 (233)
T PF01136_consen 161 ELPELKDAGVDSFRIDGRTESPEYIEEIVK 190 (233)
T ss_pred HHHHHHHcCCCEEEEcCccCCHHHHHHHHH
Confidence 4566677888887665 3444444444
No 309
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=46.54 E-value=1.9e+02 Score=24.92 Aligned_cols=109 Identities=9% Similarity=0.075 Sum_probs=63.6
Q ss_pred HHHHHhcCCcceEEEeeCH--HHHHHHHhhccC--CeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHh
Q 028497 78 LSVIERTKCYNCLVWAKSD--NLVRDIMRLSSN--VTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHG 153 (208)
Q Consensus 78 ~~~l~~~~~~~~ii~Sf~~--~~l~~l~~~~p~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 153 (208)
..+.++++ ..+.+++... +.++++++..|. .++.|-...++.... -++.+..|.. ....+..=++.+.+
T Consensus 19 ~~l~~~~g-TP~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~~~~i-l~~l~~~g~g-----~Dv~S~gEl~~al~ 91 (394)
T COG0019 19 PALAEEFG-TPVYVYDEATLRRNARELKSAFPGSGAKVFYAVKANSNPAI-LRLLAEEGSG-----FDVASLGELELALA 91 (394)
T ss_pred HHHhhccC-CCEEEEcHHHHHHHHHHHHHHhccCCceEEEEEcCCCCHHH-HHHHHHhCCC-----ceecCHHHHHHHHH
Confidence 34445555 2455555432 456777777776 566655543332211 1222323321 22344555566777
Q ss_pred CCCe---EEEeeCC-CHHHHHHHHhCCCCEEEcCChHHHHHHHH
Q 028497 154 RNKR---VFAWTVD-DEDSMRKMLHERVDAVVTSNPILFQRVMQ 193 (208)
Q Consensus 154 ~g~~---v~~wtv~-~~~~~~~~~~~gvd~i~TD~P~~~~~~~~ 193 (208)
.|.+ +.+..++ +.++++.+++.|+.-|..|.-.++.++-+
T Consensus 92 aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~ 135 (394)
T COG0019 92 AGFPPERIVFSGPAKSEEEIAFALELGIKLINVDSEEELERLSA 135 (394)
T ss_pred cCCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCCHHHHHHHHH
Confidence 7886 5555443 57889999999999899998888776554
No 310
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=46.52 E-value=53 Score=25.69 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCeEEEeeCC---------CHHHHHH----HHhCCCCEEEcCChH
Q 028497 146 KLVRTFHGRNKRVFAWTVD---------DEDSMRK----MLHERVDAVVTSNPI 186 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~---------~~~~~~~----~~~~gvd~i~TD~P~ 186 (208)
.+.+.+++.|+++.++..- +.+.+.+ +.+.|+|.|-|.++.
T Consensus 113 ~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~ 166 (235)
T cd00958 113 RVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG 166 (235)
T ss_pred HHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC
Confidence 3455678899999987632 2344444 778999999998764
No 311
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=46.43 E-value=73 Score=25.54 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=36.6
Q ss_pred CHHHHHHHHhCCC-eEEEe---eCCCHHHHHHHHhCCCCEEE-------cCChHHHHHHH
Q 028497 144 DEKLVRTFHGRNK-RVFAW---TVDDEDSMRKMLHERVDAVV-------TSNPILFQRVM 192 (208)
Q Consensus 144 ~~~~v~~~~~~g~-~v~~w---tv~~~~~~~~~~~~gvd~i~-------TD~P~~~~~~~ 192 (208)
..++++..++.|. +|.-| ++-++.+..-+.++|+||++ +.+|....+.+
T Consensus 194 p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~A~AI 253 (296)
T COG0214 194 PYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKRAKAI 253 (296)
T ss_pred hHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHHHHHH
Confidence 3478888887776 45444 46789999999999999987 45777665543
No 312
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=46.39 E-value=1.1e+02 Score=25.87 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=29.9
Q ss_pred hcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 131 RKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
.++++++.....+.....+.+...+. ..-.++++.+++..+...|+|.|.
T Consensus 216 ~~aDGVHLgq~dl~~~~aR~llg~~~-iIG~S~Hs~~e~~~A~~~GaDYI~ 265 (347)
T PRK02615 216 VDADGVHLGQEDLPLAVARQLLGPEK-IIGRSTTNPEEMAKAIAEGADYIG 265 (347)
T ss_pred cCCCEEEeChhhcCHHHHHHhcCCCC-EEEEecCCHHHHHHHHHcCCCEEE
Confidence 45555554333333333333322333 334556889999999999999996
No 313
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=46.33 E-value=57 Score=25.64 Aligned_cols=40 Identities=20% Similarity=0.073 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHH-------------HHHHHhCCCCEEEcCCh
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDS-------------MRKMLHERVDAVVTSNP 185 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~-------------~~~~~~~gvd~i~TD~P 185 (208)
.+++.+|+.|+++.+|..=...+ .+-+.++|+|.|=|..|
T Consensus 116 ~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg 168 (236)
T PF01791_consen 116 AVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG 168 (236)
T ss_dssp HHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S
T ss_pred HHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC
Confidence 45777999999999995422222 23346899999999999
No 314
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=45.99 E-value=1.9e+02 Score=24.59 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCeEEEeeCC----CHH----HHHHHHhCCCCEE-EcC-----ChHHHHHHHHHHHhh
Q 028497 146 KLVRTFHGRNKRVFAWTVD----DED----SMRKMLHERVDAV-VTS-----NPILFQRVMQDIRTQ 198 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~----~~~----~~~~~~~~gvd~i-~TD-----~P~~~~~~~~~~~~~ 198 (208)
+.++++++.|+.|.+-..+ +++ -++.+.+.|++.| +.| .|..+.++++..++.
T Consensus 116 ~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 116 EAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred HHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcc
Confidence 5678899999988654322 233 3455678899986 345 699999999887654
No 315
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=45.73 E-value=78 Score=26.00 Aligned_cols=133 Identities=11% Similarity=0.108 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHhcCCcceEEEeeC------------HHHHHHHHhhccCCeEEEEEEecCCCc-hhhhHhhhhcCceEee
Q 028497 72 GLAKDILSVIERTKCYNCLVWAKS------------DNLVRDIMRLSSNVTAGYIIMVDPSTG-FRTNLLRIRKAGVVGV 138 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf~------------~~~l~~l~~~~p~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~ 138 (208)
.=..++++.+++.|+..++|.|-+ .+.++.+|+..|+..+-.|...--+.. ....+ -..+++.++=
T Consensus 100 ~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v-~~~~pdV~nH 178 (306)
T COG0320 100 DEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIV-ADAGPDVFNH 178 (306)
T ss_pred chHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHH-HhcCcchhhc
Confidence 345678999999999888898853 135889999999999987775321111 11112 2255555431
Q ss_pred c-------cccc--------CHHHHHHHHhCCCeEEE-----eeC-CCH----HHHHHHHhCCCCEEEcC---ChHH---
Q 028497 139 Y-------HPLI--------DEKLVRTFHGRNKRVFA-----WTV-DDE----DSMRKMLHERVDAVVTS---NPIL--- 187 (208)
Q Consensus 139 ~-------~~~~--------~~~~v~~~~~~g~~v~~-----wtv-~~~----~~~~~~~~~gvd~i~TD---~P~~--- 187 (208)
+ ++.+ +-++++++++.+=.+.+ -+. .+. +.++.+.+.|||.++-- +|..
T Consensus 179 NvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiGQYlqPS~~Hl 258 (306)
T COG0320 179 NVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIGQYLQPSRKHL 258 (306)
T ss_pred ccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCCcHHHHHHHHHHHHHcCCCEEEeccccCCccccC
Confidence 1 1111 23457777776633221 111 222 35677778999998765 2221
Q ss_pred -HH-----HHHHHHHhhhhhcCcc
Q 028497 188 -FQ-----RVMQDIRTQCLEEGFS 205 (208)
Q Consensus 188 -~~-----~~~~~~~~~~~~~~~~ 205 (208)
+. +-+++++.-.++.||.
T Consensus 259 pV~ryv~PeeF~~~~~~a~~~GF~ 282 (306)
T COG0320 259 PVQRYVTPEEFDELEEVAEEMGFL 282 (306)
T ss_pred CceeccCHHHHHHHHHHHHHccch
Confidence 11 1233566777788874
No 316
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=45.69 E-value=38 Score=28.02 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=35.2
Q ss_pred HHHHHHHhC--CCeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHH
Q 028497 146 KLVRTFHGR--NKRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDI 195 (208)
Q Consensus 146 ~~v~~~~~~--g~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~ 195 (208)
+.++.++.+ ..+ ..=-+++.+++..+++.|+|.|+-| .|+.+.++++..
T Consensus 197 ~av~~~r~~~~~~k-IeVEv~sleea~ea~~~gaDiI~LDn~s~e~~~~av~~~ 249 (296)
T PRK09016 197 QAVEKAFWLHPDVP-VEVEVENLDELDQALKAGADIIMLDNFTTEQMREAVKRT 249 (296)
T ss_pred HHHHHHHHhCCCCC-EEEEeCCHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhh
Confidence 345555533 234 3334678999999999999999999 677888877754
No 317
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=45.48 E-value=1.1e+02 Score=24.42 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCC
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
..+..++.+|+.+.++. .+++..+++++.|++.+..-.
T Consensus 194 ~v~~aa~a~G~~~g~~~-~~~~~~~~~~~~G~~~~~~~~ 231 (249)
T TIGR03239 194 HIFDRAAAHGKPCGILA-PVEADARRYLEWGATFVAVGS 231 (249)
T ss_pred HHHHHHHHcCCCEEEcC-CCHHHHHHHHHcCCCEEEEhH
Confidence 44777899999998876 567899999999999987663
No 318
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=45.46 E-value=1.1e+02 Score=24.44 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=41.7
Q ss_pred cccCHHHHHHHH-hCCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-------ChHHHHHHHH
Q 028497 141 PLIDEKLVRTFH-GRNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-------NPILFQRVMQ 193 (208)
Q Consensus 141 ~~~~~~~v~~~~-~~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-------~P~~~~~~~~ 193 (208)
...++..++.+. +..++|.|- ++..+.+.....++|+|+|..| +|..+.+.++
T Consensus 167 G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~ 228 (262)
T COG2022 167 GLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFA 228 (262)
T ss_pred CcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHH
Confidence 356677766544 568888886 6789999999999999999987 7777777765
No 319
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=45.46 E-value=1.6e+02 Score=23.78 Aligned_cols=38 Identities=11% Similarity=0.320 Sum_probs=28.6
Q ss_pred HHHHHHHHhCC-CeEEE-eeCCCHHHHHHHHhCCCCEEEcC
Q 028497 145 EKLVRTFHGRN-KRVFA-WTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 145 ~~~v~~~~~~g-~~v~~-wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
.++++.+++.. +++.+ ++++++++++.+. .|+||++.-
T Consensus 187 ~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 187 KEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEES
T ss_pred HHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEEC
Confidence 35677777655 77765 6899999999999 999999864
No 320
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=45.28 E-value=1.4e+02 Score=24.11 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred hHhhhhcCceEeecccccCHHHHHHHHhCCCeEE-----------Eee-----CCCH-------HHHHHHHhCCCCEEEc
Q 028497 126 NLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVF-----------AWT-----VDDE-------DSMRKMLHERVDAVVT 182 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~-----------~wt-----v~~~-------~~~~~~~~~gvd~i~T 182 (208)
++.+..|++.+.++...-..+.++.+.++|++|. .++ ..+. ++.+.+.+.|+++|.-
T Consensus 98 r~~~~aGa~aVkiEd~~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~l 177 (254)
T cd06557 98 RLMKEAGADAVKLEGGAEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVL 177 (254)
T ss_pred HHHHHhCCeEEEEcCcHHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_pred C-ChHHHHHHHHH
Q 028497 183 S-NPILFQRVMQD 194 (208)
Q Consensus 183 D-~P~~~~~~~~~ 194 (208)
. -|..+.+.+.+
T Consensus 178 E~v~~~~~~~i~~ 190 (254)
T cd06557 178 ECVPAELAKEITE 190 (254)
T ss_pred cCCCHHHHHHHHH
No 321
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=45.02 E-value=91 Score=27.32 Aligned_cols=50 Identities=8% Similarity=0.173 Sum_probs=38.2
Q ss_pred hcCceEeeccc----ccCHHHHHHHHhC--CCeEEEeeCCCHHHHHHHHhCCCCEE
Q 028497 131 RKAGVVGVYHP----LIDEKLVRTFHGR--NKRVFAWTVDDEDSMRKMLHERVDAV 180 (208)
Q Consensus 131 ~~~~~~~~~~~----~~~~~~v~~~~~~--g~~v~~wtv~~~~~~~~~~~~gvd~i 180 (208)
.|++++.+... ..-.+.++.+++. .++|.+=++-+.++++.+++.|+|+|
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGL 290 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEE
Confidence 67887776432 1224567777776 67778878999999999999999999
No 322
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.02 E-value=49 Score=27.24 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=36.3
Q ss_pred HHHHHHHhC-C-CeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHH
Q 028497 146 KLVRTFHGR-N-KRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDI 195 (208)
Q Consensus 146 ~~v~~~~~~-g-~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~ 195 (208)
..++.++++ + .+ ..=-+++.+++..+++.|+|.|+-| .|+.+++++...
T Consensus 188 ~ai~~~r~~~~~~k-IeVEv~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~~ 240 (289)
T PRK07896 188 AALRAVRAAAPDLP-CEVEVDSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQRR 240 (289)
T ss_pred HHHHHHHHhCCCCC-EEEEcCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Confidence 445666553 2 33 3334588889999999999999999 688888888753
No 323
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=45.01 E-value=1.6e+02 Score=23.91 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCC-hHHHHHHH
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSN-PILFQRVM 192 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~-P~~~~~~~ 192 (208)
..++.++++|+.+.++. .+++..+++++.|++.|..-. -..+.+..
T Consensus 201 ~v~~a~~~~Gk~~G~~~-~~~~~a~~~~~~G~~~v~~g~D~~~l~~~~ 247 (267)
T PRK10128 201 TSIRRIRAAGKAAGFLA-VDPDMAQKCLAWGANFVAVGVDTMLYTDAL 247 (267)
T ss_pred HHHHHHHHcCCeEEEcC-CCHHHHHHHHHcCCcEEEEChHHHHHHHHH
Confidence 45677899999988765 577889999999999977663 33333333
No 324
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.95 E-value=1.3e+02 Score=24.91 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=17.0
Q ss_pred CHHHHHHHHhCCCeEEEeeCC--CHHHHHHH
Q 028497 144 DEKLVRTFHGRNKRVFAWTVD--DEDSMRKM 172 (208)
Q Consensus 144 ~~~~v~~~~~~g~~v~~wtv~--~~~~~~~~ 172 (208)
..+.++.+++.| .+..|++| +.+++.++
T Consensus 75 ~~etv~~~~~~g-~~~~y~cdis~~eei~~~ 104 (300)
T KOG1201|consen 75 NEETVKEIRKIG-EAKAYTCDISDREEIYRL 104 (300)
T ss_pred hHHHHHHHHhcC-ceeEEEecCCCHHHHHHH
Confidence 456677777777 77777765 34444333
No 325
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=44.83 E-value=1.2e+02 Score=21.88 Aligned_cols=51 Identities=12% Similarity=0.054 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCC-eEEEe--eC---C---CHHHHHHHHhCCCCEEEc-C-ChHHHHHHHHHH
Q 028497 145 EKLVRTFHGRNK-RVFAW--TV---D---DEDSMRKMLHERVDAVVT-S-NPILFQRVMQDI 195 (208)
Q Consensus 145 ~~~v~~~~~~g~-~v~~w--tv---~---~~~~~~~~~~~gvd~i~T-D-~P~~~~~~~~~~ 195 (208)
+++++.+++.|. .+.+| +. . .++..+++.++|++.|.+ + .++.+..++++.
T Consensus 72 ~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 72 RGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHH
Confidence 566777777755 23333 21 1 244567899999999887 3 566666666654
No 326
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=44.73 E-value=58 Score=27.61 Aligned_cols=41 Identities=5% Similarity=0.055 Sum_probs=34.4
Q ss_pred ccCHHHHHHHHh-CCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 142 LIDEKLVRTFHG-RNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 142 ~~~~~~v~~~~~-~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
.++.+.++.+++ -+++|.+=.+.++++++.+.+.|+|+|+-
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d~I~v 248 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGADGIWV 248 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCCEEEE
Confidence 356777787775 57888888888999999999999999976
No 327
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=44.41 E-value=57 Score=25.60 Aligned_cols=40 Identities=10% Similarity=0.205 Sum_probs=24.8
Q ss_pred CHHHHHHHHhCCCeEEEeeCC-CH----HHHHHHHhCCCCEEEcC
Q 028497 144 DEKLVRTFHGRNKRVFAWTVD-DE----DSMRKMLHERVDAVVTS 183 (208)
Q Consensus 144 ~~~~v~~~~~~g~~v~~wtv~-~~----~~~~~~~~~gvd~i~TD 183 (208)
...+.+.++++|+.+.++..+ +. +.++.++..++||||.-
T Consensus 18 ~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 62 (273)
T cd06309 18 TKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILA 62 (273)
T ss_pred HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 345566677788887776543 22 23455667778887664
No 328
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.41 E-value=42 Score=27.52 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=37.0
Q ss_pred HHHHHHHhCC---CeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHHH
Q 028497 146 KLVRTFHGRN---KRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDIR 196 (208)
Q Consensus 146 ~~v~~~~~~g---~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~~ 196 (208)
+.++.++++. .+ ..=-+++.++...+++.|+|.|+-| .|+.+.+++...+
T Consensus 181 ~av~~~r~~~~~~~k-IeVEv~slee~~ea~~~gaDiImLDn~s~e~l~~av~~~~ 235 (281)
T PRK06543 181 EALRHVRAQLGHTTH-VEVEVDRLDQIEPVLAAGVDTIMLDNFSLDDLREGVELVD 235 (281)
T ss_pred HHHHHHHHhCCCCCc-EEEEeCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHhC
Confidence 3455555542 33 3345689999999999999999999 7888888887543
No 329
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=44.39 E-value=1.6e+02 Score=23.35 Aligned_cols=104 Identities=11% Similarity=0.025 Sum_probs=52.7
Q ss_pred HHHHHHhcCCcceEE-Ee--eCH-HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhh-hcCceEe---ecc-----ccc
Q 028497 77 ILSVIERTKCYNCLV-WA--KSD-NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRI-RKAGVVG---VYH-----PLI 143 (208)
Q Consensus 77 v~~~l~~~~~~~~ii-~S--f~~-~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~---~~~-----~~~ 143 (208)
.++.+.+.|.....| .- -+. +.+.++|+..-+++.|+... |.+.. ..+... ...|.+. ++- .+.
T Consensus 83 ~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlaln--P~Tp~-~~i~~~l~~vD~VLiMtV~PGfgGQ~f~ 159 (228)
T PRK08091 83 VAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLC--PETPI-SLLEPYLDQIDLIQILTLDPRTGTKAPS 159 (228)
T ss_pred HHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEEC--CCCCH-HHHHHHHhhcCEEEEEEECCCCCCcccc
Confidence 444555666543333 11 122 46677777654458887774 44422 222211 1234322 111 122
Q ss_pred C--HHHHHHH----HhCCCe--EEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 144 D--EKLVRTF----HGRNKR--VFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 144 ~--~~~v~~~----~~~g~~--v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
. -+.++++ .++|.. +.+-+.=+.+.++.+.+.|+|.++.-
T Consensus 160 ~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~G 207 (228)
T PRK08091 160 DLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSG 207 (228)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 1 1223333 345655 45555556889999999999977543
No 330
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=44.25 E-value=1.4e+02 Score=23.22 Aligned_cols=39 Identities=13% Similarity=0.282 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCeEEEeeCC-CH----HHHHHHHhCCCCEEEcCC
Q 028497 146 KLVRTFHGRNKRVFAWTVD-DE----DSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~-~~----~~~~~~~~~gvd~i~TD~ 184 (208)
.+-+.++++|+.+.+...+ ++ +.++.++..++|||+...
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~ 63 (273)
T cd06305 20 GTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQH 63 (273)
T ss_pred HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 3445566777776654332 22 233445566777776653
No 331
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=44.22 E-value=2e+02 Score=24.49 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhcCCc-ceEEEeeCHHHHHHHHhhcc-CCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHH
Q 028497 72 GLAKDILSVIERTKCY-NCLVWAKSDNLVRDIMRLSS-NVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVR 149 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~-~~ii~Sf~~~~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 149 (208)
..+..+++.+++.+.. +.+++++........++..+ .+.+.++-...| .....+.+...++.+......+.+.++.
T Consensus 64 ~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~--~~~~~~l~~~~Pd~v~~~~~~~~~~~l~ 141 (425)
T PRK05749 64 RAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLP--GAVRRFLRFWRPKLVIIMETELWPNLIA 141 (425)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcH--HHHHHHHHhhCCCEEEEEecchhHHHHH
Confidence 3444555555544333 33455554433333333333 344322211111 1223455667888776544445577888
Q ss_pred HHHhCCCeEEEee
Q 028497 150 TFHGRNKRVFAWT 162 (208)
Q Consensus 150 ~~~~~g~~v~~wt 162 (208)
.++.+|+++.++.
T Consensus 142 ~~~~~~ip~vl~~ 154 (425)
T PRK05749 142 ELKRRGIPLVLAN 154 (425)
T ss_pred HHHHCCCCEEEEe
Confidence 8899999988764
No 332
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=43.77 E-value=1.7e+02 Score=23.48 Aligned_cols=52 Identities=13% Similarity=0.228 Sum_probs=39.4
Q ss_pred ccCHHHHHHHH-hCCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-------ChHHHHHHHH
Q 028497 142 LIDEKLVRTFH-GRNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-------NPILFQRVMQ 193 (208)
Q Consensus 142 ~~~~~~v~~~~-~~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-------~P~~~~~~~~ 193 (208)
..++..++.+. +.+++|.+- ++..+++...+.++|+|+|..| +|..+.+.++
T Consensus 161 i~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~ 221 (247)
T PF05690_consen 161 IQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFK 221 (247)
T ss_dssp SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHH
Confidence 45666666654 679999886 6789999999999999999987 8888887776
No 333
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=43.73 E-value=42 Score=28.00 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=15.0
Q ss_pred cCHHHHHHHHhCCCeEEEee
Q 028497 143 IDEKLVRTFHGRNKRVFAWT 162 (208)
Q Consensus 143 ~~~~~v~~~~~~g~~v~~wt 162 (208)
.+++-+..+|..|.+|+.|.
T Consensus 82 fs~~~i~~Lk~~g~~viaYl 101 (315)
T TIGR01370 82 YSPEEIVRAAAAGRWPIAYL 101 (315)
T ss_pred CCHHHHHHHHhCCcEEEEEE
Confidence 46677778888888888774
No 334
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=43.56 E-value=1.6e+02 Score=23.01 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhcCCcceEEEee-----CHHHHHHHHhhccCCeEEEEEEecCCC--chh----hhH-------hhhhc-
Q 028497 72 GLAKDILSVIERTKCYNCLVWAK-----SDNLVRDIMRLSSNVTAGYIIMVDPST--GFR----TNL-------LRIRK- 132 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf-----~~~~l~~l~~~~p~~~~~~l~~~~~~~--~~~----~~~-------~~~~~- 132 (208)
.....++++++++++.-..|... +++.++++.+ .+..+|-=...++.. ... .++ .+..|
T Consensus 50 ~~t~~lL~~L~~~~vkATFFv~G~~~~~~p~~ir~i~~--~GheIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~~~G~ 127 (224)
T TIGR02884 50 GYTPKILDVLKEKKVPAAFFVTGHYIKTQPDLIKRMVD--EGHIVGNHSVHHPSLTAVNDEKFKEELTGVEEEFKKVTGQ 127 (224)
T ss_pred cchHHHHHHHHHcCCCeEEEeechhhHHCHHHHHHHHH--cCCEeeecCccCcCcccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 45567999999999854444332 4556666655 233444211112111 011 111 12234
Q ss_pred --CceEeecccccCHHHHHHHHhCCCeEEEeeCC
Q 028497 133 --AGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVD 164 (208)
Q Consensus 133 --~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~ 164 (208)
+.++.+.+...+...++.+++.|+++..|+++
T Consensus 128 ~~~~~fR~P~G~~~~~~~~~l~~~Gy~~v~w~v~ 161 (224)
T TIGR02884 128 KEMKYFRPPRGVFSERTLAYTKELGYYTVFWSLA 161 (224)
T ss_pred CCCCEEeCCCCCcCHHHHHHHHHcCCcEEecccc
Confidence 34455566677888999999999999999876
No 335
>PLN02229 alpha-galactosidase
Probab=43.49 E-value=55 Score=28.58 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCeEEEeeCC--------------CHHHHHHHHhCCCCEEEcCCh
Q 028497 145 EKLVRTFHGRNKRVFAWTVD--------------DEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~--------------~~~~~~~~~~~gvd~i~TD~P 185 (208)
+.+.+++|++|+++.+|+-. .+.+++.+-+.|||.|=-|..
T Consensus 131 k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~g~e~~DA~~fA~WGVDylK~D~C 185 (427)
T PLN02229 131 KLLADYVHSKGLKLGIYSDAGVFTCQVRPGSLFHEVDDADIFASWGVDYLKYDNC 185 (427)
T ss_pred HHHHHHHHHCCCceEEeccCCCcccCCCCCCccHHHHHHHHHHHcCCCEEEecCC
Confidence 56789999999999999632 356788899999999998864
No 336
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=43.42 E-value=1.1e+02 Score=23.81 Aligned_cols=40 Identities=5% Similarity=-0.081 Sum_probs=32.4
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChH
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPI 186 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~ 186 (208)
+.++.+++.|+++.+-++-+..+...+.+.|++. ++=+-.
T Consensus 92 ~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~y-vsP~vg 131 (211)
T cd00956 92 KAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATY-VSPFVG 131 (211)
T ss_pred HHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCE-EEEecC
Confidence 4577888889999999999999999999999988 443333
No 337
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=43.30 E-value=1.4e+02 Score=22.53 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=41.2
Q ss_pred ccccCHHH---HHHHHhCCCeEEEeeCCCHHHHHHHH-hCCCCEEEcC---ChHHHHHHHHHH
Q 028497 140 HPLIDEKL---VRTFHGRNKRVFAWTVDDEDSMRKML-HERVDAVVTS---NPILFQRVMQDI 195 (208)
Q Consensus 140 ~~~~~~~~---v~~~~~~g~~v~~wtv~~~~~~~~~~-~~gvd~i~TD---~P~~~~~~~~~~ 195 (208)
.+..++++ +..++.+|+++.+-.=|++..++... .+|+++|--= ++..+++++++.
T Consensus 44 ~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m 106 (175)
T COG2179 44 NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEM 106 (175)
T ss_pred CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHc
Confidence 34566665 55678899999988878888877665 6899998765 566666777654
No 338
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=43.19 E-value=1.1e+02 Score=24.83 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=36.0
Q ss_pred HHHHHHh-CC-CeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHH
Q 028497 147 LVRTFHG-RN-KRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDI 195 (208)
Q Consensus 147 ~v~~~~~-~g-~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~ 195 (208)
-++.+++ .| -......+++.+++.++.+.|+|.|..| .|+.+.+..+..
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 3555555 33 2345667789999999999999999999 677777776543
No 339
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=42.90 E-value=1.8e+02 Score=23.43 Aligned_cols=77 Identities=13% Similarity=0.038 Sum_probs=52.9
Q ss_pred hhhcCceEeec----ccccCHHHHHHHHhC-CCeEEEe-eCCCHHHHHHHHhCCCCEEEcCChHHHHHHHHHHHhhhhhc
Q 028497 129 RIRKAGVVGVY----HPLIDEKLVRTFHGR-NKRVFAW-TVDDEDSMRKMLHERVDAVVTSNPILFQRVMQDIRTQCLEE 202 (208)
Q Consensus 129 ~~~~~~~~~~~----~~~~~~~~v~~~~~~-g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~~~~~~~~~~ 202 (208)
...|+..+++. +..-+.+.++.++.. .++|..= .+-++.++.....+|+|+|.--....=.+.+.++.+.|.+.
T Consensus 71 ~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~l 150 (247)
T PRK13957 71 ETLGASAISVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSL 150 (247)
T ss_pred HHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHc
Confidence 34788887753 334467777777765 6676553 34578888888889999997665444444566777788888
Q ss_pred Ccc
Q 028497 203 GFS 205 (208)
Q Consensus 203 ~~~ 205 (208)
|+.
T Consensus 151 Gle 153 (247)
T PRK13957 151 GMD 153 (247)
T ss_pred CCc
Confidence 864
No 340
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=42.44 E-value=2.6e+02 Score=25.18 Aligned_cols=116 Identities=8% Similarity=0.093 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHhcCCcceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhh---cCceEee--cccccCHH
Q 028497 72 GLAKDILSVIERTKCYNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIR---KAGVVGV--YHPLIDEK 146 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~ 146 (208)
+....+.+.+++.| .+.++.-.|++.++.+++. +.++ ... ++.. .+..+.. .++.+.. ..+.-+..
T Consensus 427 ~~G~~la~~L~~~g-~~vvvId~d~~~~~~~~~~--g~~~--i~G-D~~~---~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 427 RVGSLLGEKLLAAG-IPLVVIETSRTRVDELRER--GIRA--VLG-NAAN---EEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred hHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHC--CCeE--EEc-CCCC---HHHHHhcCccccCEEEEEcCChHHHHH
Confidence 56677888888776 3677788888888888763 3333 222 3322 2222323 3443322 22222223
Q ss_pred HHHHHHhCCCeEEEe-eCCCHHHHHHHHhCCCCEEEcCChHHHHHHHHHHH
Q 028497 147 LVRTFHGRNKRVFAW-TVDDEDSMRKMLHERVDAVVTSNPILFQRVMQDIR 196 (208)
Q Consensus 147 ~v~~~~~~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~~~~ 196 (208)
.+..+++..-.+.++ -+++++..+.+.+.|+|.++.-.-..+.++.+...
T Consensus 498 iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~a~~i~~~l~ 548 (558)
T PRK10669 498 IVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLE 548 (558)
T ss_pred HHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhc
Confidence 445555443333333 24778888889999999999666555555555443
No 341
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=42.42 E-value=1e+02 Score=23.78 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=27.9
Q ss_pred HHHHHHHhC--CCeEEEeeCCC-HHHH-HHHHhCCCCEEEc--CChHHHHHHHHH
Q 028497 146 KLVRTFHGR--NKRVFAWTVDD-EDSM-RKMLHERVDAVVT--SNPILFQRVMQD 194 (208)
Q Consensus 146 ~~v~~~~~~--g~~v~~wtv~~-~~~~-~~~~~~gvd~i~T--D~P~~~~~~~~~ 194 (208)
++++.+++. +.++.+.|..+ +..+ +.+.+.|++|+++ ..++.+.+.++.
T Consensus 57 ~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~ 111 (207)
T PRK11475 57 SCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFL 111 (207)
T ss_pred HHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHH
Confidence 344554433 56777777644 3323 3344678888876 356666666554
No 342
>PRK08999 hypothetical protein; Provisional
Probab=42.30 E-value=1.1e+02 Score=25.06 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=19.3
Q ss_pred EEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 158 VFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 158 v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
..-.++++.++++++.+.|+|+|.
T Consensus 228 ~ig~S~h~~~~~~~a~~~~~dyi~ 251 (312)
T PRK08999 228 WVAASCHDAEELARAQRLGVDFAV 251 (312)
T ss_pred EEEEecCCHHHHHHHHhcCCCEEE
Confidence 344566888899999999999985
No 343
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=42.24 E-value=1.6e+02 Score=23.26 Aligned_cols=51 Identities=6% Similarity=0.071 Sum_probs=30.7
Q ss_pred cCHHHHHHHHhCCCeE--EEee--CCCHHHHHHHHhCCCCEEEcCChHHHHHHHH
Q 028497 143 IDEKLVRTFHGRNKRV--FAWT--VDDEDSMRKMLHERVDAVVTSNPILFQRVMQ 193 (208)
Q Consensus 143 ~~~~~v~~~~~~g~~v--~~wt--v~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~ 193 (208)
.+..=++.+.+.|.+- .+|+ ..+.++++.+++.|+..|+.|.+.++..+.+
T Consensus 49 ~S~~El~~a~~~g~~~~~Ii~~gp~k~~~~l~~a~~~~~~~i~vDs~~el~~l~~ 103 (251)
T PF02784_consen 49 ASPGELELALKAGFPPDRIIFTGPGKSDEELEEAIENGVATINVDSLEELERLAE 103 (251)
T ss_dssp SSHHHHHHHHHTTTTGGGEEEECSS--HHHHHHHHHHTESEEEESSHHHHHHHHH
T ss_pred ecccchHHHHhhhccccceeEecCcccHHHHHHHHhCCceEEEeCCHHHHHHHhc
Confidence 4444455666666542 3333 3456777777777777777787777776554
No 344
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=42.13 E-value=1.2e+02 Score=21.40 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCeEEEe---eCCCHHHH----HHHHh-CCCCEEEcCChHHHHHHHHHHHhhhhhcCccccC
Q 028497 146 KLVRTFHGRNKRVFAW---TVDDEDSM----RKMLH-ERVDAVVTSNPILFQRVMQDIRTQCLEEGFSLIR 208 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~w---tv~~~~~~----~~~~~-~gvd~i~TD~P~~~~~~~~~~~~~~~~~~~~~~~ 208 (208)
.+.+.+..+|+....+ ........ ..+++ .++|+|++-+...+..+++... +.|..+|+
T Consensus 30 gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~~~~~~a~~~~~~l~----~~g~~vP~ 96 (160)
T PF13377_consen 30 GFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIICSNDRLALGVLRALR----ELGIRVPQ 96 (160)
T ss_dssp HHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEESSHHHHHHHHHHHH----HTTSCTTT
T ss_pred HHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEEcCHHHHHHHHHHHH----HcCCcccc
Confidence 3556778888876433 22332221 11222 3789999999888888887555 66776663
No 345
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=41.76 E-value=2.1e+02 Score=23.93 Aligned_cols=90 Identities=10% Similarity=0.067 Sum_probs=51.3
Q ss_pred HHHHHHhhcc-CCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCe--EEEe--eCCCHHHHHHH
Q 028497 98 LVRDIMRLSS-NVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKR--VFAW--TVDDEDSMRKM 172 (208)
Q Consensus 98 ~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~--v~~w--tv~~~~~~~~~ 172 (208)
.++.+++..| ++++.+....++.... -......|+ .....+..=++.+++.|.+ ..++ ...+.++++.+
T Consensus 14 n~~~l~~~~~~~~~i~~avKan~~~~i-~~~l~~~G~-----g~~vas~~E~~~~~~~G~~~~~iv~~gp~~~~~~l~~~ 87 (368)
T cd06810 14 HYAALKEALPSGVKLFYAVKANPNPHV-LRTLAEAGT-----GFDVASKGELALALAAGVPPERIIFTGPAKSVSEIEAA 87 (368)
T ss_pred HHHHHHHhCCCCCeEEEEEccCCCHHH-HHHHHHcCC-----cEEEeCHHHHHHHHHcCCCHHHEEEcCCCCCHHHHHHH
Confidence 4556666665 6666655544332111 111122332 1222344445666777763 3444 23466788899
Q ss_pred HhCCCCEEEcCChHHHHHHHH
Q 028497 173 LHERVDAVVTSNPILFQRVMQ 193 (208)
Q Consensus 173 ~~~gvd~i~TD~P~~~~~~~~ 193 (208)
++.|+..+..|.++.+.++.+
T Consensus 88 ~~~~~~~~~vds~~el~~l~~ 108 (368)
T cd06810 88 LASGVDHIVVDSLDELERLNE 108 (368)
T ss_pred HHCCCCEEEeCCHHHHHHHHH
Confidence 999888888888888876654
No 346
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=41.73 E-value=2.1e+02 Score=23.89 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=42.8
Q ss_pred HHHHHh-CCCeEEEe-eCCCHHHHHHHHhCCCCEEEc------CChHHHHHHHHHHHhhhhhcCcc
Q 028497 148 VRTFHG-RNKRVFAW-TVDDEDSMRKMLHERVDAVVT------SNPILFQRVMQDIRTQCLEEGFS 205 (208)
Q Consensus 148 v~~~~~-~g~~v~~w-tv~~~~~~~~~~~~gvd~i~T------D~P~~~~~~~~~~~~~~~~~~~~ 205 (208)
+..+++ .++++..- ++.+.+++.+++..|+++|.. +.|..+.++.++++.-+.++|+.
T Consensus 231 v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~~g~~ 296 (334)
T PRK07565 231 IAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGLEDWMERHGYE 296 (334)
T ss_pred HHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHHHHHHHHcCCC
Confidence 444443 35776543 578999999999999998764 46888888888888877777763
No 347
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=41.60 E-value=1.4e+02 Score=21.89 Aligned_cols=31 Identities=6% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCC
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKMLHER 176 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~g 176 (208)
..+.+.+.++|..|.+|.. +++..+++.+.|
T Consensus 14 ~~~a~~L~~~g~~v~~~d~-~~~~~~~~~~~g 44 (163)
T PF03446_consen 14 SAMARNLAKAGYEVTVYDR-SPEKAEALAEAG 44 (163)
T ss_dssp HHHHHHHHHTTTEEEEEES-SHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCeEEeecc-chhhhhhhHHhh
Confidence 4556677788888888874 455566665554
No 348
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=41.60 E-value=95 Score=26.52 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCeEEEeeC--CCHHHHHHHHhCCCCEEEc
Q 028497 146 KLVRTFHGRNKRVFAWTV--DDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv--~~~~~~~~~~~~gvd~i~T 182 (208)
++++.+++.|+.+.++.- +..+.++.+.+.|+|.|++
T Consensus 122 ~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~v 160 (368)
T PRK08649 122 ERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVI 160 (368)
T ss_pred HHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEE
Confidence 456667777766655542 3345667777888888887
No 349
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=41.55 E-value=26 Score=29.04 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCeEEEee
Q 028497 145 EKLVRTFHGRNKRVFAWT 162 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wt 162 (208)
..+++.+|++|+.|++|.
T Consensus 73 ~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 73 EFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred HHHHHHHHHcCCEEEEEE
Confidence 467999999999999996
No 350
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.47 E-value=1.1e+02 Score=25.34 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=10.6
Q ss_pred HHHHHhCCCCEEEcCC
Q 028497 169 MRKMLHERVDAVVTSN 184 (208)
Q Consensus 169 ~~~~~~~gvd~i~TD~ 184 (208)
++.+.+.|||++-+|.
T Consensus 147 ~~~~~~~Gvdg~w~D~ 162 (317)
T cd06598 147 YKKLIDQGVTGWWGDL 162 (317)
T ss_pred HHHhhhCCccEEEecC
Confidence 4455567777777774
No 351
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=41.44 E-value=1.2e+02 Score=24.02 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=38.7
Q ss_pred HHHHHHH-HhCCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHHH
Q 028497 145 EKLVRTF-HGRNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDIR 196 (208)
Q Consensus 145 ~~~v~~~-~~~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~~ 196 (208)
.++++.+ +..++++.+= ++.+.+++++++..|++-++.. +|+.+.++.++..
T Consensus 64 ~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~ 122 (241)
T PRK14024 64 RELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHG 122 (241)
T ss_pred HHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhh
Confidence 3556555 3456777664 6889999999999999888765 7888888877654
No 352
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=41.39 E-value=1.6e+02 Score=22.38 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=51.7
Q ss_pred eeCHHHHHHHHhhccCCeEEEEEEecCC-----CchhhhHhhhhcCceEeeccc--ccCHHHHHHHHh--CCCeEEEeeC
Q 028497 93 AKSDNLVRDIMRLSSNVTAGYIIMVDPS-----TGFRTNLLRIRKAGVVGVYHP--LIDEKLVRTFHG--RNKRVFAWTV 163 (208)
Q Consensus 93 Sf~~~~l~~l~~~~p~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~--~g~~v~~wtv 163 (208)
|+....++++++.+|+.++.++++.+.. +..++++.+.+ .++...-+ .......+.+.. .+..+..-..
T Consensus 78 syT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~W~~~~~i~~~~--~~iv~~R~g~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (193)
T TIGR00482 78 SYTIDTLKHLKKKYPDVELYFIIGADALRSFPLWKDWQELLELV--HLVIVPRPGYTLDKALLEKAILRMHHGNLTLLHN 155 (193)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEEcHHHhhhhccccCHHHHHHhC--cEEEEeCCCCCcchhhhHHHHhcccCCcEEEEcC
Confidence 3455789999999999999999875421 12223443332 33322111 111111111111 1112222111
Q ss_pred ----CCHHHHHHHHhCCCCEEEcCChHHHHHHHHHH
Q 028497 164 ----DDEDSMRKMLHERVDAVVTSNPILFQRVMQDI 195 (208)
Q Consensus 164 ----~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~~~ 195 (208)
-+..+++..++.|-+ +-.--|..+.+++.++
T Consensus 156 ~~~~iSST~IR~~l~~g~~-~~~lvP~~V~~YI~~~ 190 (193)
T TIGR00482 156 PRVPISSTEIRQRIRQGKS-IEYLLPDPVIKYIKQH 190 (193)
T ss_pred CccccCHHHHHHHHHcCCC-chhhCCHHHHHHHHHh
Confidence 146788888887743 3344788888887753
No 353
>PRK08227 autoinducer 2 aldolase; Validated
Probab=41.22 E-value=42 Score=27.27 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=28.1
Q ss_pred HHHHHHhCCCCEEEcC------ChHHHHHHHHHHHhhhhhcCccc
Q 028497 168 SMRKMLHERVDAVVTS------NPILFQRVMQDIRTQCLEEGFSL 206 (208)
Q Consensus 168 ~~~~~~~~gvd~i~TD------~P~~~~~~~~~~~~~~~~~~~~~ 206 (208)
.++.++++|+|+|..- +=..+.+-+.+...+|++.|+++
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Pl 143 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPV 143 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 4778889999998763 22344445667789999999875
No 354
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=41.21 E-value=1.4e+02 Score=22.75 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHHH-hCCCCEEE
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKML-HERVDAVV 181 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~~-~~gvd~i~ 181 (208)
.++++.++++|+++++-|-+....++.++ .+|++.+.
T Consensus 91 ~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~ 128 (219)
T TIGR00338 91 EELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAF 128 (219)
T ss_pred HHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceE
Confidence 57889999999999998876666555555 46765544
No 355
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=41.20 E-value=1.2e+02 Score=27.66 Aligned_cols=48 Identities=10% Similarity=0.140 Sum_probs=35.5
Q ss_pred HHHHHHhCCCeEEEee--CCCHHHHHHHHhCCCCEEEcCCh--HHHHHHHHH
Q 028497 147 LVRTFHGRNKRVFAWT--VDDEDSMRKMLHERVDAVVTSNP--ILFQRVMQD 194 (208)
Q Consensus 147 ~v~~~~~~g~~v~~wt--v~~~~~~~~~~~~gvd~i~TD~P--~~~~~~~~~ 194 (208)
.++.++++|++|.+.+ ..++..+..++.+|++.+...-+ ..+++.++.
T Consensus 487 vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~~~i~~~k~~i~~ 538 (565)
T TIGR01417 487 VIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMSASSILRIKMIIRK 538 (565)
T ss_pred HHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEChHhHHHHHHHHHh
Confidence 3566789999999843 56888999999999999876643 344455554
No 356
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.02 E-value=97 Score=24.43 Aligned_cols=39 Identities=10% Similarity=-0.008 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCeEEEeeCC-CH----HHHHHHHhCCCCEEEcC
Q 028497 145 EKLVRTFHGRNKRVFAWTVD-DE----DSMRKMLHERVDAVVTS 183 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~-~~----~~~~~~~~~gvd~i~TD 183 (208)
..+-+.++.+|+.+.+...+ ++ +.++.++..++|||+..
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~ 62 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVD 62 (272)
T ss_pred HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 44556677888888877654 22 23556677888888885
No 357
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=41.01 E-value=1.9e+02 Score=23.14 Aligned_cols=163 Identities=12% Similarity=0.058 Sum_probs=84.1
Q ss_pred CcCCCHHHHHHHHhcC--CceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEE-EeeCHH----HHHHHHhhc-cCCe
Q 028497 39 QVITTIEDALTLVSNS--VRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLV-WAKSDN----LVRDIMRLS-SNVT 110 (208)
Q Consensus 39 ~~iptL~evL~~~~~~--~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii-~Sf~~~----~l~~l~~~~-p~~~ 110 (208)
+....+++++..+... ...+.+|+-..+ . ..+++.-..+ .+.+ ++.+| .=...+ .++.++++. -+++
T Consensus 40 ~g~~~~~~~~~~i~~~~~~~~vs~EV~~~d--~-~~m~~eA~~l-~~~~-~nv~VKIP~T~~~G~~~l~ai~~L~~~GI~ 114 (236)
T TIGR02134 40 AGIVDYEAFAHEALAQITDLPISFEVFADD--L-DEMEKEARYI-ASWG-NNVNVKIPVTNTKGESTGPLIQKLSADGIT 114 (236)
T ss_pred cCCCCHHHHHHHHHHHccCCcEEEEEecCC--H-HHHHHHHHHH-HhcC-CCeEEEECCcCcccchHHHHHHHHHHCCCc
Confidence 3444466666554211 126888986543 1 2444443332 3333 45554 222211 244444442 3577
Q ss_pred EEEEEEecCCCchhhhHhhhhc-CceEeeccccc-----CH-HHHH----HHHh-CCCeEEEeeCCCHHHHHHHHhCCCC
Q 028497 111 AGYIIMVDPSTGFRTNLLRIRK-AGVVGVYHPLI-----DE-KLVR----TFHG-RNKRVFAWTVDDEDSMRKMLHERVD 178 (208)
Q Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~-~~v~----~~~~-~g~~v~~wtv~~~~~~~~~~~~gvd 178 (208)
+....-..+.+......+-..| ++++++...-+ ++ .+++ .++. ...++.+=.+.+...+..+...|+|
T Consensus 115 vn~T~vfs~~Qa~~aa~A~~aG~a~yispfvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS~R~~~~v~~a~~~Gad 194 (236)
T TIGR02134 115 LNVTALTTIEQVEKVCQSFTDGVPGIVSVFAGRIADTGVDPEPHMREALEIVAQKPGVELLWASPRELFNIIQADRIGCD 194 (236)
T ss_pred EEeehcCCHHHHHHHHHHHhCCCCeEEEEecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEccCCHHHHHHHHHcCCC
Confidence 7544432222211000011257 58888765432 21 2333 3333 3567777789999999999999999
Q ss_pred EEEcCChHHHHHHH--------------HHHHhhhhhcCcccc
Q 028497 179 AVVTSNPILFQRVM--------------QDIRTQCLEEGFSLI 207 (208)
Q Consensus 179 ~i~TD~P~~~~~~~--------------~~~~~~~~~~~~~~~ 207 (208)
.++. -|+.+.+++ +...++-.+.||+++
T Consensus 195 ~vTv-p~~v~~~l~~~~~~~~~~t~~av~~F~~Dw~~~~~~~~ 236 (236)
T TIGR02134 195 IITC-AHDILAKLPLLGKDLTQYSLETVQMFAKDAQSSGYSIL 236 (236)
T ss_pred EEEC-CHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHcCCccC
Confidence 9543 444444443 245666668888764
No 358
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=40.99 E-value=1.4e+02 Score=23.44 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=33.2
Q ss_pred HHHHHHHHh-CCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC----ChHHHHHHHH
Q 028497 145 EKLVRTFHG-RNKRVFAW-TVDDEDSMRKMLHERVDAVVTS----NPILFQRVMQ 193 (208)
Q Consensus 145 ~~~v~~~~~-~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD----~P~~~~~~~~ 193 (208)
.++++.+.+ -++++.+= ++.+.+++++++.+|+++++.+ +|+.+.++.+
T Consensus 62 ~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~ 116 (228)
T PRK04128 62 LDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTS 116 (228)
T ss_pred HHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHH
Confidence 445555443 56666554 6899999999999999998876 3555444443
No 359
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=40.92 E-value=1.7e+02 Score=23.59 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=19.6
Q ss_pred HHHHHHh--CCCeEEEeeCCC-H----HHHHHHHhCCCCEEEc
Q 028497 147 LVRTFHG--RNKRVFAWTVDD-E----DSMRKMLHERVDAVVT 182 (208)
Q Consensus 147 ~v~~~~~--~g~~v~~wtv~~-~----~~~~~~~~~gvd~i~T 182 (208)
+-+.+.+ .|+.+.++..+. + +.++.++..++|||+.
T Consensus 21 i~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii 63 (303)
T cd01539 21 LEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAV 63 (303)
T ss_pred HHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3344555 666666665542 2 2345566667777665
No 360
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=40.72 E-value=78 Score=25.89 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHHHh-CCC
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKMLH-ERV 177 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~-~gv 177 (208)
.++++.++++|+++.+.+..-..-++..++ .|.
T Consensus 127 ~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl 160 (277)
T TIGR01544 127 ENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGV 160 (277)
T ss_pred HHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCC
Confidence 578899999999999998776666666654 454
No 361
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=40.70 E-value=1.9e+02 Score=23.19 Aligned_cols=123 Identities=11% Similarity=0.012 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHhcCCcceEEEee--C---HHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhc----CceEeecccc
Q 028497 72 GLAKDILSVIERTKCYNCLVWAK--S---DNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRK----AGVVGVYHPL 142 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf--~---~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 142 (208)
.....+++.+.+.|....=+.|+ + .+.++.+++..|+.++..+...... ......+ .+ ++.+.+..+.
T Consensus 20 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~~~--~v~~a~~-~~~~~~~~~i~i~~~~ 96 (268)
T cd07940 20 EEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARAVKK--DIDAAAE-ALKPAKVDRIHTFIAT 96 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCHh--hHHHHHH-hCCCCCCCEEEEEecC
Confidence 33445666667777654434333 2 2455666665566665544421111 1111111 33 5544432110
Q ss_pred ----------------c--CHHHHHHHHhCCCeEEEeeCC----CHH----HHHHHHhCCCCEEE-cC-----ChHHHHH
Q 028497 143 ----------------I--DEKLVRTFHGRNKRVFAWTVD----DED----SMRKMLHERVDAVV-TS-----NPILFQR 190 (208)
Q Consensus 143 ----------------~--~~~~v~~~~~~g~~v~~wtv~----~~~----~~~~~~~~gvd~i~-TD-----~P~~~~~ 190 (208)
+ -.+.++++++.|+.|.+-..+ +++ -++.+.++|++.|. .| .|..+.+
T Consensus 97 s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~ 176 (268)
T cd07940 97 SDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGE 176 (268)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHH
Confidence 1 124677899999988743322 333 34666788999865 34 8999999
Q ss_pred HHHHHHh
Q 028497 191 VMQDIRT 197 (208)
Q Consensus 191 ~~~~~~~ 197 (208)
+++..+.
T Consensus 177 lv~~l~~ 183 (268)
T cd07940 177 LIKKLKE 183 (268)
T ss_pred HHHHHHH
Confidence 9887654
No 362
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=40.45 E-value=1.1e+02 Score=20.51 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhcCCcceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhh---hcCceEeecc--cccCHH
Q 028497 72 GLAKDILSVIERTKCYNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRI---RKAGVVGVYH--PLIDEK 146 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~ 146 (208)
.+...+++.+.+.+ .+.++...+++....+++.. +++ .. .++... +..+. ..++.+.+-. ...+-.
T Consensus 8 ~~~~~i~~~L~~~~-~~vvvid~d~~~~~~~~~~~--~~~--i~-gd~~~~---~~l~~a~i~~a~~vv~~~~~d~~n~~ 78 (116)
T PF02254_consen 8 RIGREIAEQLKEGG-IDVVVIDRDPERVEELREEG--VEV--IY-GDATDP---EVLERAGIEKADAVVILTDDDEENLL 78 (116)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT--SEE--EE-S-TTSH---HHHHHTTGGCESEEEEESSSHHHHHH
T ss_pred HHHHHHHHHHHhCC-CEEEEEECCcHHHHHHHhcc--ccc--cc-ccchhh---hHHhhcCccccCEEEEccCCHHHHHH
Confidence 56677888888833 46788999999888887644 332 23 344321 22222 3344333222 222334
Q ss_pred HHHHHHhCCCeE-EEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 147 LVRTFHGRNKRV-FAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 147 ~v~~~~~~g~~v-~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
....+++.+-.. .+-.+++++..+.+.++|+|.|++
T Consensus 79 ~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 79 IALLARELNPDIRIIARVNDPENAELLRQAGADHVIS 115 (116)
T ss_dssp HHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEEC
Confidence 456677633322 333457888899999999999985
No 363
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=40.45 E-value=1.1e+02 Score=24.82 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=35.4
Q ss_pred HHHHHHhC-C-CeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHH
Q 028497 147 LVRTFHGR-N-KRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQD 194 (208)
Q Consensus 147 ~v~~~~~~-g-~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~ 194 (208)
-++.+++. + -+.....+++.+++.++.+.|+|.|..| .|+.+.++++.
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~ 222 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNMSPEELREAVAL 222 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCcCHHHHHHHHHH
Confidence 35555553 3 2345677889999999999999999998 67777776653
No 364
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=40.29 E-value=97 Score=23.91 Aligned_cols=19 Identities=11% Similarity=0.431 Sum_probs=15.0
Q ss_pred HHHHHHHhCCCeEEEeeCC
Q 028497 146 KLVRTFHGRNKRVFAWTVD 164 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~ 164 (208)
..+++++.+|++|++|.-.
T Consensus 110 ~~ik~wk~~g~~vyiYSSG 128 (229)
T COG4229 110 QAIKRWKALGMRVYIYSSG 128 (229)
T ss_pred HHHHHHHHcCCcEEEEcCC
Confidence 4577888999999998643
No 365
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=40.28 E-value=89 Score=26.38 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=41.5
Q ss_pred ccCHHHHHHHHhCCCeEEEeeC------C----CH---HHHHHHHhCCCCEEEcC-------ChHHHHHHHHHHHhhh
Q 028497 142 LIDEKLVRTFHGRNKRVFAWTV------D----DE---DSMRKMLHERVDAVVTS-------NPILFQRVMQDIRTQC 199 (208)
Q Consensus 142 ~~~~~~v~~~~~~g~~v~~wtv------~----~~---~~~~~~~~~gvd~i~TD-------~P~~~~~~~~~~~~~~ 199 (208)
.+.+.++..++.+|++|.+=|- + +. .++..++.-|+|+|+-. ||..+.+.+++.....
T Consensus 261 ~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~p~~~v~~~~~i~~~~ 338 (348)
T PF00224_consen 261 IIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKYPVEAVKTMARIIREA 338 (348)
T ss_dssp HHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCCHHHHHHHHHHHHHHH
Confidence 3456789999999999998762 2 22 35666677799999865 9999999998765443
No 366
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.19 E-value=53 Score=26.94 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=35.4
Q ss_pred HHHHHHHhCC---CeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHH
Q 028497 146 KLVRTFHGRN---KRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDI 195 (208)
Q Consensus 146 ~~v~~~~~~g---~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~ 195 (208)
..++.++++. .++-+ -+++.++...+++.|+|.|+-| .|+.+++++...
T Consensus 182 ~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn~s~e~l~~av~~~ 235 (281)
T PRK06106 182 EAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDNMTPDTLREAVAIV 235 (281)
T ss_pred HHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHh
Confidence 4455555542 33333 4578889999999999999999 568888887744
No 367
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=40.12 E-value=1.1e+02 Score=20.94 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=26.4
Q ss_pred HHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHHHHHH
Q 028497 148 VRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQRVMQD 194 (208)
Q Consensus 148 v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~~ 194 (208)
++.++..|.+|.+-+ .+++..+.+.++|++.++......+.+.+++
T Consensus 7 ~q~ak~~G~~vi~~~-~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~ 52 (130)
T PF00107_consen 7 IQLAKAMGAKVIATD-RSEEKLELAKELGADHVIDYSDDDFVEQIRE 52 (130)
T ss_dssp HHHHHHTTSEEEEEE-SSHHHHHHHHHTTESEEEETTTSSHHHHHHH
T ss_pred HHHHHHcCCEEEEEE-CCHHHHHHHHhhccccccccccccccccccc
Confidence 455666775544444 3455566666777777766655544444433
No 368
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=39.83 E-value=97 Score=29.74 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHH-HhCCCCEEEcC-ChHHHHHHHHHHHhh
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKM-LHERVDAVVTS-NPILFQRVMQDIRTQ 198 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~-~~~gvd~i~TD-~P~~~~~~~~~~~~~ 198 (208)
..+..+++.|++++.-|.|+...+++. .+.|.+-|..+ -|+.-.+.++++++.
T Consensus 730 ~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~~V~aev~P~~K~~~Ik~lq~~ 784 (951)
T KOG0207|consen 730 LAVAELKSMGIKVVMLTGDNDAAARSVAQQVGIDNVYAEVLPEQKAEKIKEIQKN 784 (951)
T ss_pred HHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcceEEeccCchhhHHHHHHHHhc
Confidence 358889999999999999887666655 57899999999 899988999988654
No 369
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=39.67 E-value=1.3e+02 Score=24.43 Aligned_cols=50 Identities=10% Similarity=0.196 Sum_probs=36.7
Q ss_pred HHHHHHHhCCC--eEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHH
Q 028497 146 KLVRTFHGRNK--RVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDI 195 (208)
Q Consensus 146 ~~v~~~~~~g~--~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~ 195 (208)
..++.+++..- ....-.+++.+++..+...|+|.|.-| .|+.+.++++..
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i 222 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 222 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 34566666532 334456688999999999999999998 677777766654
No 370
>PLN02428 lipoic acid synthase
Probab=39.45 E-value=2.4e+02 Score=23.97 Aligned_cols=130 Identities=12% Similarity=0.069 Sum_probs=72.7
Q ss_pred HHHHHHHhcCCcceEEEeeC------------HHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeec--c-
Q 028497 76 DILSVIERTKCYNCLVWAKS------------DNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVY--H- 140 (208)
Q Consensus 76 ~v~~~l~~~~~~~~ii~Sf~------------~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~- 140 (208)
.+++.+.+.|....+++|.+ .+.++.+++..|.+.+.++....-.....-...+..|++.+... .
T Consensus 137 ~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlETv 216 (349)
T PLN02428 137 NVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIETV 216 (349)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccCc
Confidence 56666777787777777762 13678888888988887765421111101112234666654321 1
Q ss_pred ---------cccC----HHHHHHHHhC--CCeEEEe---eC-CCHHH----HHHHHhCCCCEEEc-CC--hHHHH-----
Q 028497 141 ---------PLID----EKLVRTFHGR--NKRVFAW---TV-DDEDS----MRKMLHERVDAVVT-SN--PILFQ----- 189 (208)
Q Consensus 141 ---------~~~~----~~~v~~~~~~--g~~v~~w---tv-~~~~~----~~~~~~~gvd~i~T-D~--P~~~~----- 189 (208)
+..+ -+.++.+++. |+.+..+ +. .+.++ +..+.+.|+|.+.- .+ |....
T Consensus 217 ~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~ 296 (349)
T PLN02428 217 ERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKE 296 (349)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeec
Confidence 1112 2457777887 8886433 33 34443 55566899998875 22 22111
Q ss_pred ----HHHHHHHhhhhhcCcc
Q 028497 190 ----RVMQDIRTQCLEEGFS 205 (208)
Q Consensus 190 ----~~~~~~~~~~~~~~~~ 205 (208)
+-+.+++.-+++.||.
T Consensus 297 ~v~p~~f~~~~~~~~~~gf~ 316 (349)
T PLN02428 297 YVTPEKFEFWREYGEEMGFR 316 (349)
T ss_pred ccCHHHHHHHHHHHHHcCCc
Confidence 2234667777888874
No 371
>PRK10658 putative alpha-glucosidase; Provisional
Probab=39.41 E-value=75 Score=29.49 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=13.3
Q ss_pred HHHHHHhCCCCEEEcCC
Q 028497 168 SMRKMLHERVDAVVTSN 184 (208)
Q Consensus 168 ~~~~~~~~gvd~i~TD~ 184 (208)
.+++++++|||++.+|.
T Consensus 400 ~~~~l~d~Gvdgfw~D~ 416 (665)
T PRK10658 400 KLKGLLDMGVDCFKTDF 416 (665)
T ss_pred HHHHHHhcCCcEEEecC
Confidence 35667788999999984
No 372
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.39 E-value=2.1e+02 Score=23.33 Aligned_cols=82 Identities=9% Similarity=-0.012 Sum_probs=48.0
Q ss_pred HHHHHHHhhccC-CeEEEEEEecCCCchhhhHh--hhhcCceEeecccccCHHHHHHHHh---C---CCeEEEeeCCCHH
Q 028497 97 NLVRDIMRLSSN-VTAGYIIMVDPSTGFRTNLL--RIRKAGVVGVYHPLIDEKLVRTFHG---R---NKRVFAWTVDDED 167 (208)
Q Consensus 97 ~~l~~l~~~~p~-~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~---~---g~~v~~wtv~~~~ 167 (208)
+.++++|+..|. .++..=.. . .++.. -..|+|++.... .+++.++.+.+ . ++.+-+=+-=+++
T Consensus 170 ~~v~~~k~~~p~~~~I~VEv~----t--leea~~A~~~GaDiI~LDn--~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ 241 (273)
T PRK05848 170 EFIQHARKNIPFTAKIEIECE----S--LEEAKNAMNAGADIVMCDN--MSVEEIKEVVAYRNANYPHVLLEASGNITLE 241 (273)
T ss_pred HHHHHHHHhCCCCceEEEEeC----C--HHHHHHHHHcCCCEEEECC--CCHHHHHHHHHHhhccCCCeEEEEECCCCHH
Confidence 456777777774 44432221 1 11221 237888776533 45555444332 2 3345555433899
Q ss_pred HHHHHHhCCCCEEEcCChH
Q 028497 168 SMRKMLHERVDAVVTSNPI 186 (208)
Q Consensus 168 ~~~~~~~~gvd~i~TD~P~ 186 (208)
.+..+.+.|||+|.+-.+.
T Consensus 242 ni~~ya~~GvD~IsvG~l~ 260 (273)
T PRK05848 242 NINAYAKSGVDAISSGSLI 260 (273)
T ss_pred HHHHHHHcCCCEEEeChhh
Confidence 9999999999999886543
No 373
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.39 E-value=1.8e+02 Score=22.65 Aligned_cols=57 Identities=9% Similarity=0.014 Sum_probs=39.8
Q ss_pred CceEeecccccCHHHHHHHHhCCC--eEEEeeCCCHHHHHHHHhCCC-CEEEcCChHHHH
Q 028497 133 AGVVGVYHPLIDEKLVRTFHGRNK--RVFAWTVDDEDSMRKMLHERV-DAVVTSNPILFQ 189 (208)
Q Consensus 133 ~~~~~~~~~~~~~~~v~~~~~~g~--~v~~wtv~~~~~~~~~~~~gv-d~i~TD~P~~~~ 189 (208)
++.+...........++.++++|+ .+.+.++++......++..|. ...+.-+|..+-
T Consensus 184 ~~aI~~~~d~~a~g~~~al~~~g~~~di~vvg~d~~~~~~~~l~~g~~~~tv~~~~~~~g 243 (271)
T cd06312 184 VDAVLTLGAPSAAPAAKALKQAGLKGKVKLGGFDLSPATLQAIKAGYIQFAIDQQPYLQG 243 (271)
T ss_pred ccEEEEeCCccchHHHHHHHhcCCCCCeEEEEecCCHHHHHHHhcCceEEEEecCchhhh
Confidence 466655566667788899999998 688889988777777776653 555554554443
No 374
>PRK01362 putative translaldolase; Provisional
Probab=39.38 E-value=1.9e+02 Score=22.69 Aligned_cols=141 Identities=12% Similarity=0.130 Sum_probs=78.4
Q ss_pred HHHHHHHHhcC-CceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEE-EeeCHHHHHHHHhhc-cCCeEEEEEEecCC
Q 028497 44 IEDALTLVSNS-VRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLV-WAKSDNLVRDIMRLS-SNVTAGYIIMVDPS 120 (208)
Q Consensus 44 L~evL~~~~~~-~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii-~Sf~~~~l~~l~~~~-p~~~~~~l~~~~~~ 120 (208)
+++++..+.+. .-.+.+|+-..+ . ..+++....+.+- . ++.+| .=...+-++.++.+. .++++....-+.+.
T Consensus 39 ~~~~~~~i~~~i~g~vs~qv~~~d--~-~~m~~~a~~l~~~-~-~~i~iKIP~T~~G~~a~~~L~~~Gi~v~~T~vfs~~ 113 (214)
T PRK01362 39 FEEVIKEICSIVDGPVSAEVIALD--A-EGMIKEGRELAKI-A-PNVVVKIPMTPEGLKAVKALSKEGIKTNVTLIFSAN 113 (214)
T ss_pred HHHHHHHHHHhcCCCEEEEEeeCC--H-HHHHHHHHHHHHh-C-CCEEEEeCCCHHHHHHHHHHHHCCCceEEeeecCHH
Confidence 34444444332 125788877432 1 2444443333222 2 45555 445555566666552 46777554432221
Q ss_pred CchhhhHhhhhcCceEeecccccC----------HHHHHHHHhCC--CeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHH
Q 028497 121 TGFRTNLLRIRKAGVVGVYHPLID----------EKLVRTFHGRN--KRVFAWTVDDEDSMRKMLHERVDAVVTSNPILF 188 (208)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~g--~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~ 188 (208)
+ .-++-..|+++++++.+-++ .++.+.++..| .++..=.+.+..++-.+...|+|.+ |=-|..+
T Consensus 114 Q---a~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~i-Ti~~~vl 189 (214)
T PRK01362 114 Q---ALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIA-TIPYKVI 189 (214)
T ss_pred H---HHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEE-ecCHHHH
Confidence 1 11223478998887654221 24455566666 4555667899999999999999955 4457776
Q ss_pred HHHHH
Q 028497 189 QRVMQ 193 (208)
Q Consensus 189 ~~~~~ 193 (208)
.++++
T Consensus 190 ~~l~~ 194 (214)
T PRK01362 190 KQLFK 194 (214)
T ss_pred HHHHc
Confidence 66654
No 375
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=39.36 E-value=1.8e+02 Score=25.30 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=37.7
Q ss_pred hcCceEeeccc----ccCHHHHHHHHhC--CCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 131 RKAGVVGVYHP----LIDEKLVRTFHGR--NKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 131 ~~~~~~~~~~~----~~~~~~v~~~~~~--g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
.|++++.+... ..-.++++.+++. +..+.+=.+-+.++.+.++++|+|+|.
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEE
Confidence 78898875322 1223567777765 466666678899999999999999985
No 376
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.19 E-value=1.1e+02 Score=23.96 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCeEEEeeCC-CH----HHHHHHHhCCCCEEEc
Q 028497 145 EKLVRTFHGRNKRVFAWTVD-DE----DSMRKMLHERVDAVVT 182 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~-~~----~~~~~~~~~gvd~i~T 182 (208)
..+-+.+.+.|+.+.+...+ +. +.++.+...++||||.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi 61 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVF 61 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 34445566677666554332 21 2345556667777664
No 377
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=39.07 E-value=85 Score=24.82 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCeEEEeeCCCH----HHHHHHHhCCCCEEEcC
Q 028497 146 KLVRTFHGRNKRVFAWTVDDE----DSMRKMLHERVDAVVTS 183 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~----~~~~~~~~~gvd~i~TD 183 (208)
.+.+.+...|+.+.+...++. ..++.+...++|||+..
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~ 61 (289)
T cd01540 20 FAKKAAKEKGFTVVKIDVPDGEKVLSAIDNLGAQGAKGFVIC 61 (289)
T ss_pred HHHHHHHHcCCEEEEccCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 344556667766665544332 22344556667776654
No 378
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=39.07 E-value=1e+02 Score=22.99 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHH-HhCCCCE--EEcC---ChHHH--HHHHHHHH
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKM-LHERVDA--VVTS---NPILF--QRVMQDIR 196 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~-~~~gvd~--i~TD---~P~~~--~~~~~~~~ 196 (208)
.+.++.++++|+++.+-|-++....... ..+|++. +..+ .|..- .+++++++
T Consensus 133 ~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~ 192 (215)
T PF00702_consen 133 KEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQ 192 (215)
T ss_dssp HHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHT
T ss_pred hhhhhhhhccCcceeeeeccccccccccccccccccccccccccccccchhHHHHHHHHh
Confidence 5789999999999999998877665555 4688843 4444 46655 77777654
No 379
>PLN02979 glycolate oxidase
Probab=38.98 E-value=90 Score=26.68 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=34.7
Q ss_pred cccCHHHHHHHHh-CCCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 141 PLIDEKLVRTFHG-RNKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 141 ~~~~~~~v~~~~~-~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
+.++.+-++++++ -+++|.+=.|-+.+++.++.+.|||+|+-.
T Consensus 208 ~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~Vs 251 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVS 251 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEEC
Confidence 3456666777765 477899989999999999999999998654
No 380
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=38.89 E-value=91 Score=26.02 Aligned_cols=48 Identities=6% Similarity=-0.013 Sum_probs=27.5
Q ss_pred HHHHHHhC-CCeEEEeeCCC-HHHHHHHHhCCCCEEEcCChH-HHHHHHHH
Q 028497 147 LVRTFHGR-NKRVFAWTVDD-EDSMRKMLHERVDAVVTSNPI-LFQRVMQD 194 (208)
Q Consensus 147 ~v~~~~~~-g~~v~~wtv~~-~~~~~~~~~~gvd~i~TD~P~-~~~~~~~~ 194 (208)
+++.++++ |.++......+ ...+..+.++|+|.+-.|... .+.++.+.
T Consensus 203 Ii~~ik~~~g~piilH~cG~~~~~l~~~~e~g~dvl~~d~~~~dl~eak~~ 253 (321)
T cd03309 203 IFDFLRSNTSALIVHHSCGAAASLVPSMAEMGVDSWNVVMTANNTAELRRL 253 (321)
T ss_pred HHHHHHhccCCceEEEeCCCcHHHHHHHHHcCCCEEEecCCCCCHHHHHHH
Confidence 34456666 55555555443 356777777777777766554 44444433
No 381
>PRK15452 putative protease; Provisional
Probab=38.85 E-value=2.7e+02 Score=24.46 Aligned_cols=92 Identities=7% Similarity=-0.055 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEeeCHHHHHHHHhhccCCeEEEEEEecCCCch
Q 028497 44 IEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGF 123 (208)
Q Consensus 44 L~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~ 123 (208)
|+|+++.+...+..+++=+=.-.....-......++.+.+.+... |+-.|+..+..+++..|++++-.-+..+.....
T Consensus 48 l~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDg--vIV~d~G~l~~~ke~~p~l~ih~stqlni~N~~ 125 (443)
T PRK15452 48 LALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDA--LIMSDPGLIMMVREHFPEMPIHLSVQANAVNWA 125 (443)
T ss_pred HHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCE--EEEcCHHHHHHHHHhCCCCeEEEEecccCCCHH
Confidence 667777776665555543211111100112222234444545433 333568889999998898877433322211111
Q ss_pred hhhHhhhhcCceEe
Q 028497 124 RTNLLRIRKAGVVG 137 (208)
Q Consensus 124 ~~~~~~~~~~~~~~ 137 (208)
...+.+..|++.+.
T Consensus 126 a~~f~~~lG~~rvv 139 (443)
T PRK15452 126 TVKFWQQMGLTRVI 139 (443)
T ss_pred HHHHHHHCCCcEEE
Confidence 12344556665443
No 382
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=38.73 E-value=57 Score=24.99 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=23.9
Q ss_pred HHHHHhCCCeEE--EeeCCCHHHHHHHHhCCCCEEE
Q 028497 148 VRTFHGRNKRVF--AWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 148 v~~~~~~g~~v~--~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
-+.+.+.|+..+ .|..+.++-++.+++.|.+.+|
T Consensus 107 e~~~~~~gl~~~~PLW~~~~~~ll~e~~~~g~~~~i 142 (194)
T cd01994 107 ERVCERLGLEPLAPLWGRDQEELLREMIEAGFKAII 142 (194)
T ss_pred HHHHHHcCCEEEecccCCCHHHHHHHHHHcCCeEEE
Confidence 345667777764 4777777777777777777776
No 383
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=38.59 E-value=2.1e+02 Score=23.07 Aligned_cols=128 Identities=11% Similarity=0.100 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHhcCCcceEEE---e----------e-CHHHHHHHHhhc-cCCeEEEEEEecCCCchhhhHhhhhcCceE
Q 028497 72 GLAKDILSVIERTKCYNCLVW---A----------K-SDNLVRDIMRLS-SNVTAGYIIMVDPSTGFRTNLLRIRKAGVV 136 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~---S----------f-~~~~l~~l~~~~-p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 136 (208)
.....+++.+.+.|....=+. + + +.+.++++.+.. ++.+++.+..........-..+...+.+.+
T Consensus 20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~i 99 (266)
T cd07944 20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMI 99 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEE
Confidence 444566667777775422111 1 1 245677776654 467776554321111111122234677776
Q ss_pred eecccc--c--CHHHHHHHHhCCCeEEEeeCC----CHH----HHHHHHhCCCCEEE-cC-----ChHHHHHHHHHHHhh
Q 028497 137 GVYHPL--I--DEKLVRTFHGRNKRVFAWTVD----DED----SMRKMLHERVDAVV-TS-----NPILFQRVMQDIRTQ 198 (208)
Q Consensus 137 ~~~~~~--~--~~~~v~~~~~~g~~v~~wtv~----~~~----~~~~~~~~gvd~i~-TD-----~P~~~~~~~~~~~~~ 198 (208)
.+.... + -.+.++.++++|+.|.+...+ +++ .++.+.+.|++.|. .| .|..+.++++..+..
T Consensus 100 ri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 100 RVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN 179 (266)
T ss_pred EEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 554332 2 245788999999998765322 233 45566788999874 44 899999999887654
Q ss_pred h
Q 028497 199 C 199 (208)
Q Consensus 199 ~ 199 (208)
+
T Consensus 180 ~ 180 (266)
T cd07944 180 L 180 (266)
T ss_pred c
Confidence 3
No 384
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=38.56 E-value=1.9e+02 Score=22.58 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=9.0
Q ss_pred HHHHHHHhCCCeEEEe
Q 028497 146 KLVRTFHGRNKRVFAW 161 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~w 161 (208)
..++.+++.|++|.++
T Consensus 78 ~~~~~~~~~~ipvV~~ 93 (275)
T cd06295 78 PLPERLAETGLPFVVW 93 (275)
T ss_pred HHHHHHHhCCCCEEEE
Confidence 3455556666666554
No 385
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=38.51 E-value=86 Score=26.80 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=34.3
Q ss_pred ccCHHHHHHHHhC-CCeEEEeeCCCHHHHHHHHhCCCCEE-EcCC
Q 028497 142 LIDEKLVRTFHGR-NKRVFAWTVDDEDSMRKMLHERVDAV-VTSN 184 (208)
Q Consensus 142 ~~~~~~v~~~~~~-g~~v~~wtv~~~~~~~~~~~~gvd~i-~TD~ 184 (208)
.++.+.++.+++. +++|.+=++.+.++++.+.+.||++| ++++
T Consensus 214 ~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~H 258 (367)
T TIGR02708 214 KLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNH 258 (367)
T ss_pred CCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCc
Confidence 4555667777654 78998889999999999999999997 5553
No 386
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=38.37 E-value=77 Score=24.51 Aligned_cols=13 Identities=15% Similarity=0.473 Sum_probs=6.4
Q ss_pred HHHHhCCCCEEEc
Q 028497 170 RKMLHERVDAVVT 182 (208)
Q Consensus 170 ~~~~~~gvd~i~T 182 (208)
+.+...++|||+.
T Consensus 49 ~~l~~~~~dgii~ 61 (259)
T cd01542 49 ELLARQKVDGIIL 61 (259)
T ss_pred HHHHhcCCCEEEE
Confidence 3444455555553
No 387
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=38.23 E-value=1.4e+02 Score=21.61 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=34.1
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHH-HhCCCCEEEcC---ChHHHHHHHHH
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKM-LHERVDAVVTS---NPILFQRVMQD 194 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~-~~~gvd~i~TD---~P~~~~~~~~~ 194 (208)
..+++++++|+++.+-|-+.....+.. -..|++.+++. .|..+.+++++
T Consensus 35 ~~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~~~~~~~k~~~~~~~~~~ 87 (154)
T TIGR01670 35 YGIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHLYQGQSNKLIAFSDILEK 87 (154)
T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEEEecccchHHHHHHHHHH
Confidence 478999999999999997765555554 46787765543 55555555554
No 388
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=38.13 E-value=1.8e+02 Score=22.21 Aligned_cols=82 Identities=9% Similarity=0.099 Sum_probs=42.3
Q ss_pred CHHHHHHHHhhccCCeEEE-EEEecCCCchhhhHhhhhcCceEeecccc--cCHHHHHHHHhCCCeEEEee-CCC-HHHH
Q 028497 95 SDNLVRDIMRLSSNVTAGY-IIMVDPSTGFRTNLLRIRKAGVVGVYHPL--IDEKLVRTFHGRNKRVFAWT-VDD-EDSM 169 (208)
Q Consensus 95 ~~~~l~~l~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~g~~v~~wt-v~~-~~~~ 169 (208)
..+.++.+++..+ .+... ++-.++... .+.....|++.+.++... .....++.++..|+.+.+-+ .++ .+.+
T Consensus 49 ~~~~~~~i~~~~~-~~~~v~l~v~d~~~~--i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~ 125 (220)
T PRK05581 49 GPPVVEAIRKVTK-LPLDVHLMVENPDRY--VPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPL 125 (220)
T ss_pred CHHHHHHHHhcCC-CcEEEEeeeCCHHHH--HHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHH
Confidence 4567777776555 33322 332222111 122235788886554332 22456778889998876644 233 4444
Q ss_pred HHHHhCCCCEE
Q 028497 170 RKMLHERVDAV 180 (208)
Q Consensus 170 ~~~~~~gvd~i 180 (208)
+.+ ..++|.|
T Consensus 126 ~~~-~~~~d~i 135 (220)
T PRK05581 126 EDV-LDLLDLV 135 (220)
T ss_pred HHH-HhhCCEE
Confidence 444 3335654
No 389
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=37.87 E-value=1.6e+02 Score=23.13 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=37.5
Q ss_pred CHHHHHHHHh-CCCeEEE-eeCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHH
Q 028497 144 DEKLVRTFHG-RNKRVFA-WTVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDI 195 (208)
Q Consensus 144 ~~~~v~~~~~-~g~~v~~-wtv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~ 195 (208)
+.++++.+.+ .++++.+ -++.+.+++++++..|+++++.+ +|+.+.++.+++
T Consensus 59 ~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~ 117 (243)
T cd04731 59 MLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKRF 117 (243)
T ss_pred cHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHc
Confidence 3455565544 5677654 46889999999999999999887 566666666654
No 390
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.71 E-value=1e+02 Score=24.20 Aligned_cols=37 Identities=8% Similarity=0.119 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCeEEEeeCC-CH----HHHHHHHhCCCCEEEc
Q 028497 146 KLVRTFHGRNKRVFAWTVD-DE----DSMRKMLHERVDAVVT 182 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~-~~----~~~~~~~~~gvd~i~T 182 (208)
.+-+.++++|+.+.+...+ +. ..++.+...++|||+.
T Consensus 20 ~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii 61 (282)
T cd06318 20 AAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLII 61 (282)
T ss_pred HHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3344555666666554432 22 1344455666666664
No 391
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=37.68 E-value=1.5e+02 Score=23.89 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=28.1
Q ss_pred HHHHHHhCCCeEEEee------C---CCHHH----HHHHHhCCCCEEEcCChH
Q 028497 147 LVRTFHGRNKRVFAWT------V---DDEDS----MRKMLHERVDAVVTSNPI 186 (208)
Q Consensus 147 ~v~~~~~~g~~v~~wt------v---~~~~~----~~~~~~~gvd~i~TD~P~ 186 (208)
+.+.+++.|+++.++. + .+.+. .+.+.++|+|.|-|.++.
T Consensus 131 v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~ 183 (267)
T PRK07226 131 VAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG 183 (267)
T ss_pred HHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC
Confidence 4556788999999873 2 22333 355568999999999764
No 392
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=37.51 E-value=1.9e+02 Score=24.02 Aligned_cols=48 Identities=10% Similarity=0.184 Sum_probs=33.3
Q ss_pred HHHHHHHhC---CCeEE-EeeCCCHHHHHHHHhCCCCEEEc------CChHHHHHHHH
Q 028497 146 KLVRTFHGR---NKRVF-AWTVDDEDSMRKMLHERVDAVVT------SNPILFQRVMQ 193 (208)
Q Consensus 146 ~~v~~~~~~---g~~v~-~wtv~~~~~~~~~~~~gvd~i~T------D~P~~~~~~~~ 193 (208)
+.+..++++ ++++. +-++.+.+++.+++..|+|+|.. +.|..+.++.+
T Consensus 268 ~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~ 325 (327)
T cd04738 268 EVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKR 325 (327)
T ss_pred HHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHHHh
Confidence 445555543 46765 56789999999999999998764 34666555543
No 393
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=37.51 E-value=1.1e+02 Score=21.33 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCCeEEEeeCC-CHHHHHHHHh
Q 028497 145 EKLVRTFHGRNKRVFAWTVD-DEDSMRKMLH 174 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~-~~~~~~~~~~ 174 (208)
.++++.++++|+++.+.|-+ .+.....+++
T Consensus 35 ~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~ 65 (128)
T TIGR01681 35 RDKLQTLKKNGFLLALASYNDDPHVAYELLK 65 (128)
T ss_pred HHHHHHHHHCCeEEEEEeCCCCHHHHHHHHH
Confidence 46788999999999999987 5655555544
No 394
>PTZ00411 transaldolase-like protein; Provisional
Probab=37.50 E-value=2.5e+02 Score=23.67 Aligned_cols=131 Identities=8% Similarity=0.128 Sum_probs=71.4
Q ss_pred eEEEEeecCCCCCchhHHHHHHHHHHh---cCC--cceEE-EeeCHHHHHHHHhhc-cCCeEEEEEEecCCCchhhhHhh
Q 028497 57 KVILDAKVGPPSYEKGLAKDILSVIER---TKC--YNCLV-WAKSDNLVRDIMRLS-SNVTAGYIIMVDPSTGFRTNLLR 129 (208)
Q Consensus 57 ~l~lEiK~~~~~~~~~~~~~v~~~l~~---~~~--~~~ii-~Sf~~~~l~~l~~~~-p~~~~~~l~~~~~~~~~~~~~~~ 129 (208)
++.+|+-..-......+++....+.+- .|. ++.+| +-..++-++.++.+. -++++-...-+...+ .-...
T Consensus 102 ~VS~EVd~~ls~d~e~~i~~A~~l~~l~~~~gi~~~rilIKIPaT~eGi~Aa~~L~~eGI~~N~TlvFS~~Q---A~aaa 178 (333)
T PTZ00411 102 RVSTEVDARLSFDKQAMVDKARKIIKMYEEAGISKDRILIKLASTWEGIQAAKALEKEGIHCNLTLLFSFAQ---AVACA 178 (333)
T ss_pred CEEEEEccccccCHHHHHHHHHHHHHhhhhhcCCCCcEEEEeCCCHHHHHHHHHHHHCCCceeEeEecCHHH---HHHHH
Confidence 577787432101112454444444443 344 34555 556677666666653 356665443222111 11222
Q ss_pred hhcCceEeecccccC-----------------------HHHHHHHHhCCCeE--EEeeCCCHHHHHHHHhCCCCEEEcCC
Q 028497 130 IRKAGVVGVYHPLID-----------------------EKLVRTFHGRNKRV--FAWTVDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 130 ~~~~~~~~~~~~~~~-----------------------~~~v~~~~~~g~~v--~~wtv~~~~~~~~~~~~gvd~i~TD~ 184 (208)
..|+.+++++.+-+. .++.+..+++|.+. ..=.+.+..++..+ .|+|.+ |=-
T Consensus 179 eAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~l--aG~D~l-Ti~ 255 (333)
T PTZ00411 179 QAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILEL--AGCDKL-TIS 255 (333)
T ss_pred HcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHH--HCCCEE-eCC
Confidence 357777776433211 14556677777764 44567788887774 899998 667
Q ss_pred hHHHHHHHH
Q 028497 185 PILFQRVMQ 193 (208)
Q Consensus 185 P~~~~~~~~ 193 (208)
|..+.++..
T Consensus 256 p~ll~~L~~ 264 (333)
T PTZ00411 256 PKLLEELAN 264 (333)
T ss_pred HHHHHHHHh
Confidence 777776654
No 395
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=37.34 E-value=83 Score=25.32 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC-ChHHHHHHHH
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS-NPILFQRVMQ 193 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD-~P~~~~~~~~ 193 (208)
..+..++++|+.+.++. .++++.+++++.|++.|..- +...+.+..+
T Consensus 201 ~v~~aa~~~G~~~g~~~-~~~~~~~~~~~~G~~~v~~~~D~~~l~~~~~ 248 (256)
T PRK10558 201 HIFARAKAHGKPSGILA-PVEADARRYLEWGATFVAVGSDLGVFRSATQ 248 (256)
T ss_pred HHHHHHHHcCCceEEcC-CCHHHHHHHHHcCCCEEEEchHHHHHHHHHH
Confidence 34677999999998875 56778999999999998766 3444444444
No 396
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=37.28 E-value=84 Score=25.82 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=37.0
Q ss_pred cCHHHHHHHHhC-CCeEE---EeeCCCHHHHHHHHhCCCCEEEc-------CChHHHHHHHH
Q 028497 143 IDEKLVRTFHGR-NKRVF---AWTVDDEDSMRKMLHERVDAVVT-------SNPILFQRVMQ 193 (208)
Q Consensus 143 ~~~~~v~~~~~~-g~~v~---~wtv~~~~~~~~~~~~gvd~i~T-------D~P~~~~~~~~ 193 (208)
.+.++++.+++. +++|. .=++.+++++..++++|+++|.. ++|....+.+.
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv 245 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIV 245 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHH
Confidence 455777877765 57875 23578999999999999999853 46776555443
No 397
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=37.18 E-value=92 Score=26.45 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=36.6
Q ss_pred CHHHHHHHHhcC-CceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceE--EEeeCHHHHHHHH
Q 028497 43 TIEDALTLVSNS-VRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCL--VWAKSDNLVRDIM 103 (208)
Q Consensus 43 tL~evL~~~~~~-~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~i--i~Sf~~~~l~~l~ 103 (208)
.|+++++.++.. ...+-+|.-+.. +....++.+++.|..+.. ++||+++.++.+.
T Consensus 76 ~l~~ll~~i~~~~~~eit~E~~P~~------~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~ 133 (370)
T PRK06294 76 LIQDILKTLEAPHATEITLEANPEN------LSESYIRALALTGINRISIGVQTFDDPLLKLLG 133 (370)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCC------CCHHHHHHHHHCCCCEEEEccccCCHHHHHHcC
Confidence 457777777432 346777875542 335567889999986654 5899988776554
No 398
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=37.18 E-value=1.8e+02 Score=23.74 Aligned_cols=54 Identities=7% Similarity=0.121 Sum_probs=37.8
Q ss_pred hhhcCceEee----cc------cccCHHHHHHHHh-CCCeEEEee--CCCHHHHHHHHhCCCCEEEc
Q 028497 129 RIRKAGVVGV----YH------PLIDEKLVRTFHG-RNKRVFAWT--VDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 129 ~~~~~~~~~~----~~------~~~~~~~v~~~~~-~g~~v~~wt--v~~~~~~~~~~~~gvd~i~T 182 (208)
+..|+|++++ .+ +.++.+.++.+++ -++++..=+ .-+.+.+.++++.|+++|-.
T Consensus 163 ~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kinv 229 (281)
T PRK06806 163 EETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKINV 229 (281)
T ss_pred HhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEE
Confidence 4468888765 12 2345666777764 478887766 55788999999999998643
No 399
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=37.13 E-value=1.3e+02 Score=23.42 Aligned_cols=68 Identities=9% Similarity=0.076 Sum_probs=40.9
Q ss_pred EeeCHHHHHHHHhhccCCe--EEEEEEecCCCchhhhHhhhhcCceEeecccccC--HHHHHHHHhCCCeEEEe
Q 028497 92 WAKSDNLVRDIMRLSSNVT--AGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLID--EKLVRTFHGRNKRVFAW 161 (208)
Q Consensus 92 ~Sf~~~~l~~l~~~~p~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g~~v~~w 161 (208)
+.|-+-.+..+|+..+.-+ =.-++-..|.+.. ..+++ .|++.+.+++.... .++++++|++|+++.+-
T Consensus 47 iT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V-~~~a~-agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~a 118 (224)
T KOG3111|consen 47 ITFGPPVVESLRKHTGADPFFDVHMMVENPEQWV-DQMAK-AGASLFTFHYEATQKPAELVEKIREKGMKVGLA 118 (224)
T ss_pred cccchHHHHHHHhccCCCcceeEEEeecCHHHHH-HHHHh-cCcceEEEEEeeccCHHHHHHHHHHcCCeeeEE
Confidence 3456778888888633211 1222323443211 23433 78888877765433 57899999999998753
No 400
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=37.07 E-value=2e+02 Score=22.32 Aligned_cols=87 Identities=8% Similarity=0.056 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcc-CC-eEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHh-CCCeE-EEeeCCCHHHHHH
Q 028497 96 DNLVRDIMRLSS-NV-TAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHG-RNKRV-FAWTVDDEDSMRK 171 (208)
Q Consensus 96 ~~~l~~l~~~~p-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~v-~~wtv~~~~~~~~ 171 (208)
.+.++.+.+..| .+ ++|+.....+. ...++.+..+.+++..|.. .++..++.+++ .++++ .+..+.+..++..
T Consensus 41 ~~~a~~i~~~~~~~i~~VgVf~~~~~~--~i~~~~~~~~~d~vQLHg~-e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~ 117 (210)
T PRK01222 41 PEQAAELAAALPPFVKVVGVFVNASDE--EIDEIVETVPLDLLQLHGD-ETPEFCRQLKRRYGLPVIKALRVRSAGDLEA 117 (210)
T ss_pred HHHHHHHHHhCCCCCCEEEEEeCCCHH--HHHHHHHhcCCCEEEECCC-CCHHHHHHHHhhcCCcEEEEEecCCHHHHHH
Confidence 344555555433 34 45544432221 1234445677888777654 45777777775 35554 2445655444444
Q ss_pred HHh--CCCCEEEcCCh
Q 028497 172 MLH--ERVDAVVTSNP 185 (208)
Q Consensus 172 ~~~--~gvd~i~TD~P 185 (208)
+.. -.+|++..|-.
T Consensus 118 ~~~~~~~~d~~L~Ds~ 133 (210)
T PRK01222 118 AAAYYGDADGLLLDAY 133 (210)
T ss_pred HHhhhccCCEEEEcCC
Confidence 433 25889999853
No 401
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=36.95 E-value=1.2e+02 Score=23.85 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=27.1
Q ss_pred HHHHHHHHhCC--CeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 145 EKLVRTFHGRN--KRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 145 ~~~v~~~~~~g--~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
.+.++++.+.+ .++.+|+-+....++.+.+.|++.|..
T Consensus 54 ~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i 93 (265)
T cd03174 54 WEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRI 93 (265)
T ss_pred HHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEE
Confidence 35667777766 677777766677888888888777643
No 402
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=36.92 E-value=2.3e+02 Score=24.96 Aligned_cols=23 Identities=4% Similarity=-0.010 Sum_probs=17.3
Q ss_pred CHHHHHHHHhcCCceEEEEeecC
Q 028497 43 TIEDALTLVSNSVRKVILDAKVG 65 (208)
Q Consensus 43 tL~evL~~~~~~~~~l~lEiK~~ 65 (208)
.|+++++.+...+.-..+|+=+.
T Consensus 147 ~l~~l~~~a~~lGl~~lvEvh~~ 169 (454)
T PRK09427 147 QYRQLAAVAHSLNMGVLTEVSNE 169 (454)
T ss_pred HHHHHHHHHHHcCCcEEEEECCH
Confidence 58888888877766778887664
No 403
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=36.75 E-value=2.2e+02 Score=22.81 Aligned_cols=138 Identities=11% Similarity=0.050 Sum_probs=77.3
Q ss_pred cCCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEee---CHHHHHHHHhhccC-CeEEEEE
Q 028497 40 VITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAK---SDNLVRDIMRLSSN-VTAGYII 115 (208)
Q Consensus 40 ~iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf---~~~~l~~l~~~~p~-~~~~~l~ 115 (208)
.-|.-.+++..+... ..+.+++=..-. ..+.+..++. .|..++++.|+ +++.++++.+.+|+ +-+++-.
T Consensus 59 g~~~n~~~i~~i~~~-~~~~vQvGGGIR-----s~~~v~~ll~-~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~ 131 (241)
T COG0106 59 GGPRNLEAIKEILEA-TDVPVQVGGGIR-----SLEDVEALLD-AGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDA 131 (241)
T ss_pred CCcccHHHHHHHHHh-CCCCEEeeCCcC-----CHHHHHHHHH-CCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEc
Confidence 445555666655554 356678777642 2233444443 67777777774 88999999888872 2233322
Q ss_pred Eec-----CCC----chhhhHhh---hhcCceEee---c--cc--ccCHHHHH-HHHhCCCeEEEe-eCCCHHHHHHHHh
Q 028497 116 MVD-----PST----GFRTNLLR---IRKAGVVGV---Y--HP--LIDEKLVR-TFHGRNKRVFAW-TVDDEDSMRKMLH 174 (208)
Q Consensus 116 ~~~-----~~~----~~~~~~~~---~~~~~~~~~---~--~~--~~~~~~v~-~~~~~g~~v~~w-tv~~~~~~~~~~~ 174 (208)
... -|. ..+.++.+ ..|...+-+ . .. -.+.+++. .+..-.++|..- ++.+-++++.+.+
T Consensus 132 r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~ 211 (241)
T COG0106 132 RDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKE 211 (241)
T ss_pred cCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHh
Confidence 210 010 01123322 233332211 1 11 13444433 344557787654 6889999999999
Q ss_pred C-CCCEEEcCC
Q 028497 175 E-RVDAVVTSN 184 (208)
Q Consensus 175 ~-gvd~i~TD~ 184 (208)
. |+.|+|.-.
T Consensus 212 ~~G~~GvIvG~ 222 (241)
T COG0106 212 LSGVEGVIVGR 222 (241)
T ss_pred cCCCcEEEEeh
Confidence 9 899999764
No 404
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=36.67 E-value=1e+02 Score=24.61 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=34.0
Q ss_pred ccCHHHHHHHHhCCCe----EEEee----CCCHHHHHHHHhCCCCEE-EcCChHHHH
Q 028497 142 LIDEKLVRTFHGRNKR----VFAWT----VDDEDSMRKMLHERVDAV-VTSNPILFQ 189 (208)
Q Consensus 142 ~~~~~~v~~~~~~g~~----v~~wt----v~~~~~~~~~~~~gvd~i-~TD~P~~~~ 189 (208)
-.++++.+.+++.|++ ||+|+ ..++++++.+..+|+|.| +|-.|+...
T Consensus 130 ~yd~~Lr~~a~~~~~~~~~GvY~~~~GP~fET~AEir~~r~~GaD~VGMS~vpEvil 186 (237)
T TIGR01698 130 AYSPRLRELAERVDPPLAEGVYAWFPGPHYETPAEIRMAGILGADLVGMSTVPETIA 186 (237)
T ss_pred ccCHHHHHHHHHcCCCccCEEEEEecCCCcCCHHHHHHHHHcCCCEeccCchHHHHH
Confidence 3567777777777765 66775 367899999999999986 444555443
No 405
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=36.64 E-value=67 Score=28.45 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=39.2
Q ss_pred hcCceEeeccc----ccCHHHHHHHHhC--CCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 131 RKAGVVGVYHP----LIDEKLVRTFHGR--NKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 131 ~~~~~~~~~~~----~~~~~~v~~~~~~--g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
.|++.+.+... ..-.++++++|+. +++|.+=.+-+.+.++.+++.|+|+|-
T Consensus 236 aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 236 AGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred hCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEE
Confidence 67777765422 2234678889987 788888667899999999999999995
No 406
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.62 E-value=55 Score=25.59 Aligned_cols=8 Identities=13% Similarity=0.240 Sum_probs=3.4
Q ss_pred hCCCCEEE
Q 028497 174 HERVDAVV 181 (208)
Q Consensus 174 ~~gvd~i~ 181 (208)
..+|||||
T Consensus 48 ~~~vdGiI 55 (265)
T cd01543 48 DWQGDGII 55 (265)
T ss_pred ccccceEE
Confidence 33444444
No 407
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=36.12 E-value=2.4e+02 Score=23.05 Aligned_cols=58 Identities=10% Similarity=-0.029 Sum_probs=39.8
Q ss_pred HHHHHhCCCeEEEee--CCCHHHHHHHHhCCCCEEEcCC----hHHHHHHHHHHHhhhhhcCcc
Q 028497 148 VRTFHGRNKRVFAWT--VDDEDSMRKMLHERVDAVVTSN----PILFQRVMQDIRTQCLEEGFS 205 (208)
Q Consensus 148 v~~~~~~g~~v~~wt--v~~~~~~~~~~~~gvd~i~TD~----P~~~~~~~~~~~~~~~~~~~~ 205 (208)
...+++..++|.+=. ..+.+.++.+++.|++.|+-|- .+...+.-++...-|...|.+
T Consensus 67 ~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ 130 (281)
T PRK06806 67 VAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGAT 130 (281)
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 345666777766543 3467788889999999999883 334445555677888887754
No 408
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=36.05 E-value=2.6e+02 Score=23.40 Aligned_cols=91 Identities=7% Similarity=-0.028 Sum_probs=50.7
Q ss_pred HHHHHHhhcc--CCeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCe--EEEe-e-CCCHHHHHH
Q 028497 98 LVRDIMRLSS--NVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKR--VFAW-T-VDDEDSMRK 171 (208)
Q Consensus 98 ~l~~l~~~~p--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~--v~~w-t-v~~~~~~~~ 171 (208)
.++.+++..| +.++.+.+..++.......+ ...| .. ....+..=+..+++.|.+ -.++ . +.+.++++.
T Consensus 16 n~~~l~~~~~~~~~~~~yavKaN~~~~v~~~l-~~~G-~g----~~vaS~~E~~~~~~~G~~~~~I~~~~p~k~~~~l~~ 89 (373)
T cd06828 16 NYRRLKEAFSGPGFKICYAVKANSNLAILKLL-AEEG-LG----ADVVSGGELYRALKAGFPPERIVFTGNGKSDEELEL 89 (373)
T ss_pred HHHHHHHhhCCCCcEEEEEehhCCCHHHHHHH-HHcC-Cc----EEEeCHHHHHHHHHcCCCcccEEEeCCCCCHHHHHH
Confidence 4566666666 56666655444321111111 2233 11 122334334566677764 2333 3 346788888
Q ss_pred HHhCCCCEEEcCChHHHHHHHHH
Q 028497 172 MLHERVDAVVTSNPILFQRVMQD 194 (208)
Q Consensus 172 ~~~~gvd~i~TD~P~~~~~~~~~ 194 (208)
+++.|+..++.|.++++.++.+.
T Consensus 90 a~~~g~~~~~ids~~el~~l~~~ 112 (373)
T cd06828 90 ALELGILRINVDSLSELERLGEI 112 (373)
T ss_pred HHHcCCeEEEECCHHHHHHHHHH
Confidence 88888888888888888776553
No 409
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=36.03 E-value=65 Score=26.01 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=59.4
Q ss_pred HhcCCcce--EEEeeCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhh--hhcCceEeeccccc---------CHHHH
Q 028497 82 ERTKCYNC--LVWAKSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLR--IRKAGVVGVYHPLI---------DEKLV 148 (208)
Q Consensus 82 ~~~~~~~~--ii~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---------~~~~v 148 (208)
+.+|..-+ ++...+.+.++++-...-+.-...|.+.+.. .++.+ ..|+.+++++...+ +..+.
T Consensus 126 r~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~----eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la 201 (254)
T COG0134 126 RAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNE----EELERALKLGAKIIGINNRDLTTLEVDLETTEKLA 201 (254)
T ss_pred HHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCH----HHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHH
Confidence 34454333 2244567767777666555555566664321 23322 27888888865422 22334
Q ss_pred HHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 149 RTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 149 ~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
..+.+.-+.|.--++.++++++++.+.|++++.-
T Consensus 202 ~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LV 235 (254)
T COG0134 202 PLIPKDVILISESGISTPEDVRRLAKAGADAFLV 235 (254)
T ss_pred hhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 4444555555667899999999999999999874
No 410
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=36.00 E-value=43 Score=24.05 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCeEEEee
Q 028497 145 EKLVRTFHGRNKRVFAWT 162 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wt 162 (208)
.++++.+|++|++|.++.
T Consensus 47 ge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 47 GEQVEACHERGIRVPAYF 64 (132)
T ss_pred HHHHHHHHHCCCEEEEEE
Confidence 678999999999999874
No 411
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=35.98 E-value=1.1e+02 Score=23.59 Aligned_cols=37 Identities=14% Similarity=0.173 Sum_probs=18.3
Q ss_pred HHHHHHhCCCeEEEe-e-CCCH----HHHHHHHhCCCCEEEcC
Q 028497 147 LVRTFHGRNKRVFAW-T-VDDE----DSMRKMLHERVDAVVTS 183 (208)
Q Consensus 147 ~v~~~~~~g~~v~~w-t-v~~~----~~~~~~~~~gvd~i~TD 183 (208)
+-+.+++.|..+.++ . -++. +.++.+++.|+|+|+..
T Consensus 20 ~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~ 62 (257)
T PF13407_consen 20 AKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVS 62 (257)
T ss_dssp HHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEE
T ss_pred HHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEec
Confidence 334455666665553 2 1222 23455556666666644
No 412
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.74 E-value=86 Score=25.80 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=35.5
Q ss_pred HHHHHHHhC-C--CeEEEeeCCCHHHHHHHHhCCCCEEEcC--ChHHHHHHHHHH
Q 028497 146 KLVRTFHGR-N--KRVFAWTVDDEDSMRKMLHERVDAVVTS--NPILFQRVMQDI 195 (208)
Q Consensus 146 ~~v~~~~~~-g--~~v~~wtv~~~~~~~~~~~~gvd~i~TD--~P~~~~~~~~~~ 195 (208)
+.++.++++ + .+ ..-.+++.+++.++++.|+|.|.-| .|+.+.+++...
T Consensus 184 ~av~~~r~~~~~~~~-I~VEv~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~ 237 (288)
T PRK07428 184 EAITRIRQRIPYPLT-IEVETETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLI 237 (288)
T ss_pred HHHHHHHHhCCCCCE-EEEECCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 345555553 3 33 3345689999999999999999999 677777777643
No 413
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=35.72 E-value=57 Score=25.74 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCeEE--EeeCCCHHHHHHHHhCCCCEEE
Q 028497 146 KLVRTFHGRNKRVF--AWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 146 ~~v~~~~~~g~~v~--~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
..-+.+.+.|+..+ .|..+..+-++.+++.|.+.+|
T Consensus 102 ~~e~v~~~lgl~~~~PLW~~~~~~ll~e~i~~G~~aiI 139 (223)
T TIGR00290 102 RIERVCRELGLKSFAPLWHRDPEKLMEEFVEEKFEARI 139 (223)
T ss_pred HHHHHHHhcCCEEeccccCCCHHHHHHHHHHcCCeEEE
Confidence 34455778888875 5888888888899999988888
No 414
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=35.66 E-value=1.3e+02 Score=24.92 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCeEEEee--CCCHHHHHHHHhCCCCEEEcCCh
Q 028497 146 KLVRTFHGRNKRVFAWT--VDDEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wt--v~~~~~~~~~~~~gvd~i~TD~P 185 (208)
..++.++++|++|.+-+ ..++..+..++.+|++.+-.+-+
T Consensus 239 ~vi~~a~~~g~~vsvCGe~a~~p~~~~~Ll~lGi~~lSv~p~ 280 (293)
T PF02896_consen 239 QVIDAAHKAGKPVSVCGEMASDPEAIPLLLGLGIRSLSVSPD 280 (293)
T ss_dssp HHHHHHHHTT-EEEEESGGGGSHHHHHHHHHHT-SEEEE-GG
T ss_pred HHHHHHhhcCcEEEEecCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 34777899999999986 45889999999999999988743
No 415
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=35.60 E-value=1.9e+02 Score=25.03 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHHH-hCCCCEEEcC-ChHHHHHHHH-HHHhhhhhcCc
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKML-HERVDAVVTS-NPILFQRVMQ-DIRTQCLEEGF 204 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~~-~~gvd~i~TD-~P~~~~~~~~-~~~~~~~~~~~ 204 (208)
.++-+.++++|+++++...+..+.+..+. +.+|..|.+| .+........ ..++.|.+.|.
T Consensus 64 ~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i 126 (429)
T TIGR02765 64 KDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGI 126 (429)
T ss_pred HHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCc
Confidence 34556788999999998777777777775 5799999999 3333222222 34555666554
No 416
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=35.60 E-value=3.3e+02 Score=24.43 Aligned_cols=105 Identities=15% Similarity=0.247 Sum_probs=68.6
Q ss_pred CHHHHHHHHhhccCCeEEEEEEec--CC--Cch---hhhHh---hhhcCceEeecccccC----HHHHHHHHhCCCeE--
Q 028497 95 SDNLVRDIMRLSSNVTAGYIIMVD--PS--TGF---RTNLL---RIRKAGVVGVYHPLID----EKLVRTFHGRNKRV-- 158 (208)
Q Consensus 95 ~~~~l~~l~~~~p~~~~~~l~~~~--~~--~~~---~~~~~---~~~~~~~~~~~~~~~~----~~~v~~~~~~g~~v-- 158 (208)
.++.++.+++..|+.++..+.... ++ .+. ...+. ...|.+++.+...+-+ ...++.+++.|..+
T Consensus 63 pwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~ 142 (499)
T PRK12330 63 PWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQG 142 (499)
T ss_pred HHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEE
Confidence 357899999999999987666422 11 111 11122 2378888877655433 34577788899866
Q ss_pred -EEeeCC---CH----HHHHHHHhCCCCEEE-cC-----ChHHHHHHHHHHHhhh
Q 028497 159 -FAWTVD---DE----DSMRKMLHERVDAVV-TS-----NPILFQRVMQDIRTQC 199 (208)
Q Consensus 159 -~~wtv~---~~----~~~~~~~~~gvd~i~-TD-----~P~~~~~~~~~~~~~~ 199 (208)
..||+. +. +-++.+.++|++.|. .| .|..+.++++.++..+
T Consensus 143 ~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~ 197 (499)
T PRK12330 143 TICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEAC 197 (499)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhC
Confidence 356543 33 245667789999875 44 8999999998887554
No 417
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=35.50 E-value=73 Score=25.50 Aligned_cols=35 Identities=6% Similarity=0.036 Sum_probs=27.0
Q ss_pred CHHHHHHHHhCCCeEEEeeCCCHHHHHHHH-hCCCC
Q 028497 144 DEKLVRTFHGRNKRVFAWTVDDEDSMRKML-HERVD 178 (208)
Q Consensus 144 ~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~-~~gvd 178 (208)
+.+.+++++++|+++.+-|.+....+..++ ++|.+
T Consensus 29 ~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 29 AAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 345688899999999999999987776554 45664
No 418
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=35.43 E-value=2.3e+02 Score=22.71 Aligned_cols=103 Identities=11% Similarity=0.130 Sum_probs=55.8
Q ss_pred HHHHHhcCCcceEE-Eee-CHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeeccc-----ccCHHHHHH
Q 028497 78 LSVIERTKCYNCLV-WAK-SDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHP-----LIDEKLVRT 150 (208)
Q Consensus 78 ~~~l~~~~~~~~ii-~Sf-~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~ 150 (208)
+.....+|..-..+ .+. +...++.+.+..-.+-.-.+...+... . ...+...|+++++++.. ..+.+....
T Consensus 126 i~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~-E-~~~A~~~gadiIgin~rdl~~~~~d~~~~~~ 203 (260)
T PRK00278 126 IYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEE-E-LERALKLGAPLIGINNRNLKTFEVDLETTER 203 (260)
T ss_pred HHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHH-H-HHHHHHcCCCEEEECCCCcccccCCHHHHHH
Confidence 34455667654443 333 455555555543333222233322111 0 11223478898887541 123344444
Q ss_pred HHhC---C-CeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 151 FHGR---N-KRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 151 ~~~~---g-~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+... + ..+..=++++++++.++.+.|+|+|+-
T Consensus 204 l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 204 LAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred HHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 4332 2 334556889999999999999999874
No 419
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=35.41 E-value=1.7e+02 Score=26.02 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=34.8
Q ss_pred hHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 126 NLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
+++...+++.++.....+.....+.....+..+.+ ++++.+++..+.+.|+|.|.
T Consensus 361 ~lA~~~~adGvHl~~~d~~~~~~r~~~~~~~~iG~-S~h~~~e~~~a~~~gadyi~ 415 (502)
T PLN02898 361 DVALACDADGVHLGQSDMPVRLARSLLGPGKIIGV-SCKTPEQAEQAWKDGADYIG 415 (502)
T ss_pred HHHHhcCCCEEEeChHhcCHHHHHHhcCCCCEEEE-eCCCHHHHHHHhhcCCCEEE
Confidence 45555778877765444444433433333443333 45788899999999999987
No 420
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=35.35 E-value=91 Score=25.68 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCeEEEeeCCC-----H----HHHHHHHhCCCCEEE
Q 028497 145 EKLVRTFHGRNKRVFAWTVDD-----E----DSMRKMLHERVDAVV 181 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~-----~----~~~~~~~~~gvd~i~ 181 (208)
.+.+++++++|++|.+=.++. . +.++....+||+||=
T Consensus 171 ~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIK 216 (312)
T COG1242 171 VDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIK 216 (312)
T ss_pred HHHHHHHHHcCCeEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEE
Confidence 456788999999999877653 2 346667789999974
No 421
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=35.23 E-value=2e+02 Score=21.81 Aligned_cols=130 Identities=15% Similarity=0.098 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEeeC-----HHHHHHHHhhccCCeEEEEE
Q 028497 41 ITTIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWAKS-----DNLVRDIMRLSSNVTAGYII 115 (208)
Q Consensus 41 iptL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~Sf~-----~~~l~~l~~~~p~~~~~~l~ 115 (208)
++.++++-..+++ ..+.+++|--+. . ...++...+.|..-.++-.+. .+.++.+++ -+++++.-+
T Consensus 40 ~~~i~~l~~~~~~--~~i~~d~k~~d~----~--~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~--~g~~~~~~~ 109 (206)
T TIGR03128 40 IEAVKEMKEAFPD--RKVLADLKTMDA----G--EYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKK--HGKEVQVDL 109 (206)
T ss_pred HHHHHHHHHHCCC--CEEEEEEeeccc----h--HHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH--cCCEEEEEe
Confidence 3444444444332 367889986532 1 112444556675444443332 234455554 356776543
Q ss_pred EecCCCchhhhH--hhhhcCceEeecccc-------cCHHHHHHHHhC--CCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 116 MVDPSTGFRTNL--LRIRKAGVVGVYHPL-------IDEKLVRTFHGR--NKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~v~~~~~~--g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
. .|.+.. ... +...|++++.+...+ ...+.++.+++. ...+.+=+.-+.+.+..+++.|+++++.
T Consensus 110 ~-~~~t~~-~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 110 I-NVKDKV-KRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred c-CCCChH-HHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcCHHHHHHHHHcCCCEEEE
Confidence 2 233321 122 223588887764221 133445555542 3444433334777899999999998765
No 422
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=35.19 E-value=97 Score=25.45 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=29.9
Q ss_pred HHHHHHhCCCeEEEeeCCC-HHHHHHHHhCCCCEEEcCChHHHHHHHH
Q 028497 147 LVRTFHGRNKRVFAWTVDD-EDSMRKMLHERVDAVVTSNPILFQRVMQ 193 (208)
Q Consensus 147 ~v~~~~~~g~~v~~wtv~~-~~~~~~~~~~gvd~i~TD~P~~~~~~~~ 193 (208)
+++.++.+|.++......+ ...+..+.++|+|++-.|....+.++.+
T Consensus 213 i~~~i~~~g~~~~lH~cG~~~~~~~~l~~~~~d~~~~d~~~dl~~~~~ 260 (330)
T cd03465 213 VFDAIKALGGPVIHHNCGDTAPILELMADLGADVFSIDVTVDLAEAKK 260 (330)
T ss_pred HHHHHHHcCCceEEEECCCchhHHHHHHHhCCCeEeecccCCHHHHHH
Confidence 3556777777776665543 3667777788888877775544444433
No 423
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=35.17 E-value=86 Score=26.49 Aligned_cols=55 Identities=9% Similarity=0.239 Sum_probs=35.8
Q ss_pred HHHHHHHHhcC---CceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceE--EEeeCHHHHHHHHh
Q 028497 44 IEDALTLVSNS---VRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCL--VWAKSDNLVRDIMR 104 (208)
Q Consensus 44 L~evL~~~~~~---~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~i--i~Sf~~~~l~~l~~ 104 (208)
|+++++.++.. ...+.+|.-+.. +.+..++.+++.|..+.. ++|++++.++.+.+
T Consensus 75 l~~ll~~i~~~~~~~~eitiE~nP~~------lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R 134 (353)
T PRK05904 75 LDILLSTIKPYVDNNCEFTIECNPEL------ITQSQINLLKKNKVNRISLGVQSMNNNILKQLNR 134 (353)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeccCc------CCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 46677666542 236778865542 335677888898986653 58998887765544
No 424
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=35.17 E-value=2.6e+02 Score=23.10 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=48.4
Q ss_pred HHHHHHhhccCCeEEEEEEecCCC-ch-hhhHh---hhhcCceEeeccc--------ccCHHHHHHH-HhCCCeEEEee-
Q 028497 98 LVRDIMRLSSNVTAGYIIMVDPST-GF-RTNLL---RIRKAGVVGVYHP--------LIDEKLVRTF-HGRNKRVFAWT- 162 (208)
Q Consensus 98 ~l~~l~~~~p~~~~~~l~~~~~~~-~~-~~~~~---~~~~~~~~~~~~~--------~~~~~~v~~~-~~~g~~v~~wt- 162 (208)
.++.+++..+ +|+..-....... .. ..++. ...|++.+.+|.. ..+.+.+..+ ....++|..-+
T Consensus 113 iv~~~~~~~~-~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGd 191 (309)
T PF01207_consen 113 IVKAVRKAVP-IPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGD 191 (309)
T ss_dssp HHHHHHHH-S-SEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS
T ss_pred HHHhhhcccc-cceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCc
Confidence 4555655433 6665444321111 10 12232 3478888877643 2344555554 35668888875
Q ss_pred CCCHHHHHHHHhC-CCCEEEcC-----ChHHHHH
Q 028497 163 VDDEDSMRKMLHE-RVDAVVTS-----NPILFQR 190 (208)
Q Consensus 163 v~~~~~~~~~~~~-gvd~i~TD-----~P~~~~~ 190 (208)
+.+.++++++++. |+|||+.= +|-.+.+
T Consensus 192 I~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~ 225 (309)
T PF01207_consen 192 IFSPEDAERMLEQTGADGVMIGRGALGNPWLFRE 225 (309)
T ss_dssp --SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCH
T ss_pred cCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhh
Confidence 6889999999877 99999864 6666664
No 425
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=35.14 E-value=1.6e+02 Score=23.18 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=38.9
Q ss_pred hhcCceEeecc-------cccCHHHHHHHHh-CCCeEEEe-eCCCHHHHHHHHhC-CCCEEEcCCh
Q 028497 130 IRKAGVVGVYH-------PLIDEKLVRTFHG-RNKRVFAW-TVDDEDSMRKMLHE-RVDAVVTSNP 185 (208)
Q Consensus 130 ~~~~~~~~~~~-------~~~~~~~v~~~~~-~g~~v~~w-tv~~~~~~~~~~~~-gvd~i~TD~P 185 (208)
..|++++.++. .-.+.++++.+.+ .+++|.+- .+.+.+++..+++. |+|+++.-.+
T Consensus 160 ~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~a 225 (243)
T cd04731 160 ELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASI 225 (243)
T ss_pred HCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHH
Confidence 35777665422 1234566676654 47888765 47899999999987 9999998544
No 426
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=35.12 E-value=2.9e+02 Score=23.71 Aligned_cols=38 Identities=8% Similarity=0.155 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHH----HHhCCCCEEEcC
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRK----MLHERVDAVVTS 183 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~----~~~~gvd~i~TD 183 (208)
++.+.+.+.+.++.+...|+-++++. +.+.|++-|.-|
T Consensus 196 e~~klav~y~vplvl~a~~dl~~lk~la~~~~~~Gi~divLd 237 (467)
T COG1456 196 EFAKLAVEYKVPLVLSAFNDLDDLKNLAVTYAQAGIKDIVLD 237 (467)
T ss_pred HHHHHHhhcCCcEEEeccCCHHHHHHHHHHHHHcCCceEEec
Confidence 34444445555555555555444332 334555555555
No 427
>PLN02762 pyruvate kinase complex alpha subunit
Probab=35.12 E-value=3.4e+02 Score=24.43 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=46.0
Q ss_pred ccCHHHHHHHHhCCCeEEEeeC------C-------CHHHHHHHHhCCCCEEEc-------CChHHHHHHHHHHHhhhh
Q 028497 142 LIDEKLVRTFHGRNKRVFAWTV------D-------DEDSMRKMLHERVDAVVT-------SNPILFQRVMQDIRTQCL 200 (208)
Q Consensus 142 ~~~~~~v~~~~~~g~~v~~wtv------~-------~~~~~~~~~~~gvd~i~T-------D~P~~~~~~~~~~~~~~~ 200 (208)
.+.+.+++.++.+|++|.+=|- + +..++..++--|+|+|+- .||.++.+.+++.....+
T Consensus 290 ~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~G~yPveaV~~m~~I~~~aE 368 (509)
T PLN02762 290 SVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGLYPEKALSVLRSVSLRME 368 (509)
T ss_pred HHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcCCCCHHHHHHHHHHHHHHHH
Confidence 4567889999999999998772 2 235778888899999975 499999999987654444
No 428
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=34.87 E-value=1.4e+02 Score=26.40 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHHH-hCCCCEEEcCChHHHHHHHH--HHHhhhhhcCcc
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKML-HERVDAVVTSNPILFQRVMQ--DIRTQCLEEGFS 205 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~~-~~gvd~i~TD~P~~~~~~~~--~~~~~~~~~~~~ 205 (208)
.++-+.++++|+++++++.+....+.+++ +.+++.|+.|.-...-...+ ..+..|.+.|..
T Consensus 58 ~~L~~~L~~~gi~L~v~~~~~~~~l~~~~~~~~~~~v~~n~~~~~~~~~rD~al~~~l~~~gi~ 121 (461)
T COG0415 58 QALQQSLAELGIPLLVREGDPEQVLPELAKQLAATTVFWNRDYEEWERQRDAALAQPLTEVGIA 121 (461)
T ss_pred HHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhCcceEEeeeeechhHHHHHHHHHHHHHhcCce
Confidence 34566788999999999999887777765 57899999884433332222 256677777743
No 429
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=34.78 E-value=99 Score=27.08 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=35.4
Q ss_pred HHHHHHHHhcC-----CceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceE--EEeeCHHHHHHHHh
Q 028497 44 IEDALTLVSNS-----VRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCL--VWAKSDNLVRDIMR 104 (208)
Q Consensus 44 L~evL~~~~~~-----~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~i--i~Sf~~~~l~~l~~ 104 (208)
|+++++.++.. ...+.+|+-.. .+-+..++.+++.|..+.. +.||+++.++.+.+
T Consensus 122 l~~ll~~i~~~~~~~~~~e~tie~~p~------~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R 183 (453)
T PRK13347 122 FERLMAALRDAFDFAPEAEIAVEIDPR------TVTAEMLQALAALGFNRASFGVQDFDPQVQKAINR 183 (453)
T ss_pred HHHHHHHHHHhCCCCCCceEEEEeccc------cCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCC
Confidence 57777777652 23566665433 2445678889999986654 58888776655443
No 430
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=34.71 E-value=2.8e+02 Score=23.34 Aligned_cols=91 Identities=7% Similarity=0.062 Sum_probs=52.9
Q ss_pred HHHHHHhhccC-CeEEEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCC---eEEEeeC-CCHHHHHHH
Q 028497 98 LVRDIMRLSSN-VTAGYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNK---RVFAWTV-DDEDSMRKM 172 (208)
Q Consensus 98 ~l~~l~~~~p~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~---~v~~wtv-~~~~~~~~~ 172 (208)
.++++++..|+ .++.+....++.......+ ...+. .....+..=++.+++.|+ ++.+... .++++++.+
T Consensus 20 n~~~l~~~~~~~~~~~yavKan~~~~v~~~l-~~~g~-----g~~vaS~~E~~~~~~~G~~~~~I~~~~~~k~~~~l~~a 93 (382)
T cd06839 20 RYAALRAALPPAIEIYYSLKANPNPALVAHL-RQLGD-----GAEVASAGELALALEAGVPPEKILFAGPGKSDAELRRA 93 (382)
T ss_pred HHHHHHHhcCCCcEEEEEeccCCCHHHHHHH-HHcCC-----CEEEeCHHHHHHHHHcCCCHHHEEEeCCCCCHHHHHHH
Confidence 45667666664 5565555444321111111 21221 122344444566777776 3444443 478889999
Q ss_pred HhCCCCEEEcCChHHHHHHHHH
Q 028497 173 LHERVDAVVTSNPILFQRVMQD 194 (208)
Q Consensus 173 ~~~gvd~i~TD~P~~~~~~~~~ 194 (208)
++.|+..+..|.++++..+.+.
T Consensus 94 ~~~g~~~i~vds~~el~~l~~~ 115 (382)
T cd06839 94 IEAGIGTINVESLEELERIDAL 115 (382)
T ss_pred HHCCCCEEEECCHHHHHHHHHH
Confidence 9999888999999988876553
No 431
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=34.70 E-value=1.2e+02 Score=24.00 Aligned_cols=23 Identities=4% Similarity=0.140 Sum_probs=13.3
Q ss_pred CHHHHHHHHhcC-------CceEEEEeecC
Q 028497 43 TIEDALTLVSNS-------VRKVILDAKVG 65 (208)
Q Consensus 43 tL~evL~~~~~~-------~~~l~lEiK~~ 65 (208)
+|+|+++.+++. ++.|.||.--.
T Consensus 71 ~f~dv~~aI~~~AF~~s~yPvIlSlE~Hcs 100 (227)
T cd08594 71 LFRDVIETINKYAFIKNEYPVILSIENHCS 100 (227)
T ss_pred CHHHHHHHHHHhhccCCCCCEEEEecccCC
Confidence 477777776652 34555665543
No 432
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=34.62 E-value=1.2e+02 Score=25.35 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=44.2
Q ss_pred HHHHHh-CCCeEE-EeeCCCHHHHHHHHhCCCCEEEc------CChHHHHHHHHHHHhhhhhcCcc
Q 028497 148 VRTFHG-RNKRVF-AWTVDDEDSMRKMLHERVDAVVT------SNPILFQRVMQDIRTQCLEEGFS 205 (208)
Q Consensus 148 v~~~~~-~g~~v~-~wtv~~~~~~~~~~~~gvd~i~T------D~P~~~~~~~~~~~~~~~~~~~~ 205 (208)
+..+++ .++++. +-++.+.+++.+++..|+++|.. +-|..+.++.+++..-..++|+.
T Consensus 229 v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 229 IAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred HHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 344433 357765 55789999999999999999765 46888889998888878888863
No 433
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=34.57 E-value=2.4e+02 Score=22.47 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=45.0
Q ss_pred hcCceEeecc-------cccCHHHHHHHH-hCCCeEEEe-eCCCHHHHHHHHhCC-CCEEEcCChHHHH-HHHHHHHhhh
Q 028497 131 RKAGVVGVYH-------PLIDEKLVRTFH-GRNKRVFAW-TVDDEDSMRKMLHER-VDAVVTSNPILFQ-RVMQDIRTQC 199 (208)
Q Consensus 131 ~~~~~~~~~~-------~~~~~~~v~~~~-~~g~~v~~w-tv~~~~~~~~~~~~g-vd~i~TD~P~~~~-~~~~~~~~~~ 199 (208)
.|++.+.+.. .-.+-++++.+. ..+++|.+- ++.+.+++.++++.| +++++.-.----. --+.+.+..|
T Consensus 167 ~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~ 246 (254)
T TIGR00735 167 LGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYL 246 (254)
T ss_pred cCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHH
Confidence 5777654421 112345555544 357787654 588999999999988 9998764221000 0123445566
Q ss_pred hhcCccc
Q 028497 200 LEEGFSL 206 (208)
Q Consensus 200 ~~~~~~~ 206 (208)
.+.|+++
T Consensus 247 ~~~gi~~ 253 (254)
T TIGR00735 247 AERGIPV 253 (254)
T ss_pred HHCCCcc
Confidence 6777764
No 434
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=34.54 E-value=1.8e+02 Score=23.01 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=36.7
Q ss_pred HHHHHHHHh-CCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHH
Q 028497 145 EKLVRTFHG-RNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDI 195 (208)
Q Consensus 145 ~~~v~~~~~-~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~ 195 (208)
-++++.+.+ .++++.+= ++.+.+++++++..|+++++.+ +|..+.++.+.+
T Consensus 63 ~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 63 LDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANPELISEAADRF 120 (253)
T ss_pred HHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHc
Confidence 455665543 45676654 5788999999999999999987 566666666554
No 435
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=34.52 E-value=3.1e+02 Score=23.76 Aligned_cols=26 Identities=4% Similarity=0.148 Sum_probs=14.1
Q ss_pred HHHHHHHHhCCCCEEEcCChHHHHHHH
Q 028497 166 EDSMRKMLHERVDAVVTSNPILFQRVM 192 (208)
Q Consensus 166 ~~~~~~~~~~gvd~i~TD~P~~~~~~~ 192 (208)
.++++.+++.|+ .+..|.++.+..+.
T Consensus 93 ~~~i~~a~~~gi-~i~vDs~~el~~l~ 118 (423)
T cd06842 93 DEFLWLAVRHGA-TIAVDSLDELDRLL 118 (423)
T ss_pred HHHHHHHHhCCC-EEEECCHHHHHHHH
Confidence 344555556665 35555555555443
No 436
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.48 E-value=2.3e+02 Score=22.42 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCeEEEeeCC-CH----HHHHHHHhCCCCEEEcC
Q 028497 146 KLVRTFHGRNKRVFAWTVD-DE----DSMRKMLHERVDAVVTS 183 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~-~~----~~~~~~~~~gvd~i~TD 183 (208)
.+.+.+.++|+.+.+.... +. ..++.+++.++|||+.-
T Consensus 20 gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~ 62 (288)
T cd01538 20 NFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIA 62 (288)
T ss_pred HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4445567777777766443 22 23555667788877753
No 437
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=34.41 E-value=1.9e+02 Score=22.96 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=36.7
Q ss_pred HHHHHHHHh-CCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHH
Q 028497 145 EKLVRTFHG-RNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDI 195 (208)
Q Consensus 145 ~~~v~~~~~-~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~ 195 (208)
.++++.+.+ .++++.+= ++.+.+++++++..|++.++.. +|..+.++.+++
T Consensus 63 ~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~ 120 (254)
T TIGR00735 63 IDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRF 120 (254)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHc
Confidence 455665544 46776554 6789999999999999999876 566766665543
No 438
>PRK06801 hypothetical protein; Provisional
Probab=34.29 E-value=2.5e+02 Score=23.11 Aligned_cols=58 Identities=12% Similarity=-0.006 Sum_probs=39.5
Q ss_pred HHHHHhCCCeEEEee--CCCHHHHHHHHhCCCCEEEcC---Ch-HHHHHHHHHHHhhhhhcCcc
Q 028497 148 VRTFHGRNKRVFAWT--VDDEDSMRKMLHERVDAVVTS---NP-ILFQRVMQDIRTQCLEEGFS 205 (208)
Q Consensus 148 v~~~~~~g~~v~~wt--v~~~~~~~~~~~~gvd~i~TD---~P-~~~~~~~~~~~~~~~~~~~~ 205 (208)
...+++..++|.+=. ..+.+.+.++++.|++.|+.| .| +.-.+..++...-|+..|.+
T Consensus 67 ~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~ 130 (286)
T PRK06801 67 KFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVS 130 (286)
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 344556777766543 335778888899999999987 33 44555566677778877754
No 439
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=34.04 E-value=2.2e+02 Score=21.96 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=19.4
Q ss_pred HHHHHHhCCCeEEEeeCC-CH----HHHHHHHhCCCCEEEc
Q 028497 147 LVRTFHGRNKRVFAWTVD-DE----DSMRKMLHERVDAVVT 182 (208)
Q Consensus 147 ~v~~~~~~g~~v~~wtv~-~~----~~~~~~~~~gvd~i~T 182 (208)
+-+.++++|..+.+...+ ++ +.++.+...++|||+.
T Consensus 21 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii 61 (268)
T cd06298 21 IDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIF 61 (268)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 345566667766554332 22 2244555667777773
No 440
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=34.04 E-value=1.1e+02 Score=24.00 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=31.2
Q ss_pred CHHHHHHHHh-CCCeEEEee-CCCHHHHHHHHhCCCCEEEcC
Q 028497 144 DEKLVRTFHG-RNKRVFAWT-VDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 144 ~~~~v~~~~~-~g~~v~~wt-v~~~~~~~~~~~~gvd~i~TD 183 (208)
+.++++.+.+ .++++.+-+ +.+.++++.++++|+++++..
T Consensus 177 ~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 218 (233)
T cd04723 177 DLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALVA 218 (233)
T ss_pred CHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEe
Confidence 4466665544 478887764 899999999999999999865
No 441
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=34.01 E-value=54 Score=21.89 Aligned_cols=35 Identities=9% Similarity=0.157 Sum_probs=26.2
Q ss_pred cCHHHHHHHHhCCCeEEEeeCCCHHHHHHHH-hCCC
Q 028497 143 IDEKLVRTFHGRNKRVFAWTVDDEDSMRKML-HERV 177 (208)
Q Consensus 143 ~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~-~~gv 177 (208)
+...++++++++|++++..+-++.+.+.++. .+|.
T Consensus 40 v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~ 75 (89)
T PF08444_consen 40 VMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGF 75 (89)
T ss_pred HHHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCC
Confidence 3456789999999999999987766666665 4553
No 442
>smart00484 XPGI Xeroderma pigmentosum G I-region. domain in nucleases
Probab=33.85 E-value=59 Score=20.70 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=9.6
Q ss_pred HHHHHHHHhCC-CCEEEcCCh
Q 028497 166 EDSMRKMLHER-VDAVVTSNP 185 (208)
Q Consensus 166 ~~~~~~~~~~g-vd~i~TD~P 185 (208)
+.+..++.+.| ||+|+|+.-
T Consensus 15 eAq~A~L~~~g~vdav~s~D~ 35 (73)
T smart00484 15 EAQCAYLAKSGLVDAIITEDS 35 (73)
T ss_pred HHHHHHHHhCCCeeEEEcCcc
Confidence 34444444444 555555543
No 443
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=33.85 E-value=73 Score=25.39 Aligned_cols=51 Identities=18% Similarity=0.008 Sum_probs=36.2
Q ss_pred HHHHHHHH-hCCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHH
Q 028497 145 EKLVRTFH-GRNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDI 195 (208)
Q Consensus 145 ~~~v~~~~-~~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~ 195 (208)
.++++.+. .-++++.+= ++.+.++++.+++.|++-|+.+ +|+.+.++.+++
T Consensus 63 ~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~ 120 (243)
T TIGR01919 63 EMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYG 120 (243)
T ss_pred HHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHc
Confidence 34555443 345565553 6789999999999999998865 778877777655
No 444
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.83 E-value=1e+02 Score=23.91 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=4.9
Q ss_pred HHHHHhCCCeE
Q 028497 148 VRTFHGRNKRV 158 (208)
Q Consensus 148 v~~~~~~g~~v 158 (208)
++.+...+..-
T Consensus 48 i~~l~~~~~dg 58 (265)
T cd06285 48 IEMLLDRRVDG 58 (265)
T ss_pred HHHHHHcCCCE
Confidence 44444444443
No 445
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=33.83 E-value=3.1e+02 Score=23.68 Aligned_cols=48 Identities=8% Similarity=0.135 Sum_probs=24.9
Q ss_pred CHHHHHHHHhCCCe------EEEee--CCCHHHHHHHHhCCCCEEEcCChHHHHHHH
Q 028497 144 DEKLVRTFHGRNKR------VFAWT--VDDEDSMRKMLHERVDAVVTSNPILFQRVM 192 (208)
Q Consensus 144 ~~~~v~~~~~~g~~------v~~wt--v~~~~~~~~~~~~gvd~i~TD~P~~~~~~~ 192 (208)
+..=++.+.+.|++ -.+++ +.+.+++++++++|+ .|..|.++.+.++.
T Consensus 76 S~~E~~~a~~~G~~~~~~~~~Ii~~gp~k~~~~l~~a~~~gv-~i~vDs~~el~~i~ 131 (420)
T PRK11165 76 SLGEIERALAAGYKPGTEPDEIVFTADVIDRATLARVVELKI-PVNAGSIDMLDQLG 131 (420)
T ss_pred CHHHHHHHHHcCCCCCCCCCeEEEeCCCCCHHHHHHHHHCCC-EEEECCHHHHHHHH
Confidence 33334555555553 23333 235566666666666 45556666655443
No 446
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=33.80 E-value=1.3e+02 Score=24.94 Aligned_cols=33 Identities=9% Similarity=0.332 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHHH-hCCCC
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKML-HERVD 178 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~~-~~gvd 178 (208)
+.++.++++|+++.+||-++.+.+...+ ..|.+
T Consensus 155 EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~ 188 (303)
T PHA03398 155 DSLDELKERGCVLVLWSYGNREHVVHSLKETKLE 188 (303)
T ss_pred HHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCC
Confidence 5678899999999999977666555555 46665
No 447
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=33.69 E-value=2.3e+02 Score=22.03 Aligned_cols=124 Identities=11% Similarity=0.084 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhcCCcceEEE-ee-CH---HHHHHHHhhccCCeEEEEEEecCCCchhhh-H--hhhhcCceEeecccc-
Q 028497 72 GLAKDILSVIERTKCYNCLVW-AK-SD---NLVRDIMRLSSNVTAGYIIMVDPSTGFRTN-L--LRIRKAGVVGVYHPL- 142 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~-Sf-~~---~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~- 142 (208)
.....+++.+.+.|....=+. ++ +. +.++.+.+..++.++..+.. +....... + .+..|++.+.+..+.
T Consensus 14 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~g~~~i~i~~~~s 91 (237)
T PF00682_consen 14 EEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQALCR--ANEEDIERAVEAAKEAGIDIIRIFISVS 91 (237)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEEEE--SCHHHHHHHHHHHHHTTSSEEEEEEETS
T ss_pred HHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcccccceeee--ehHHHHHHHHHhhHhccCCEEEecCccc
Confidence 334456666777776544333 33 22 34566666556655543332 11111111 1 123566655432211
Q ss_pred ---------------c--CHHHHHHHHhCCCeEEEeeCC----CHH----HHHHHHhCCCCEEEc-C-----ChHHHHHH
Q 028497 143 ---------------I--DEKLVRTFHGRNKRVFAWTVD----DED----SMRKMLHERVDAVVT-S-----NPILFQRV 191 (208)
Q Consensus 143 ---------------~--~~~~v~~~~~~g~~v~~wtv~----~~~----~~~~~~~~gvd~i~T-D-----~P~~~~~~ 191 (208)
+ -...++.+++.|..|.+-..+ +++ -++.+.++|++.|.- | .|..+.++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~l 171 (237)
T PF00682_consen 92 DLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAEL 171 (237)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHH
Confidence 1 135688899999999665443 233 355566789997653 3 79998888
Q ss_pred HHHHHh
Q 028497 192 MQDIRT 197 (208)
Q Consensus 192 ~~~~~~ 197 (208)
++..+.
T Consensus 172 v~~~~~ 177 (237)
T PF00682_consen 172 VRALRE 177 (237)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 448
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.69 E-value=2.3e+02 Score=22.33 Aligned_cols=59 Identities=10% Similarity=0.058 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCeEEEee---CCCH----HHHHHHHhC--CCCEEEcCChHHHHHHHHHHHhhhhhcCccccC
Q 028497 146 KLVRTFHGRNKRVFAWT---VDDE----DSMRKMLHE--RVDAVVTSNPILFQRVMQDIRTQCLEEGFSLIR 208 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wt---v~~~----~~~~~~~~~--gvd~i~TD~P~~~~~~~~~~~~~~~~~~~~~~~ 208 (208)
.+.+.++++|+....+. -.+. ..++++++. .+++|++-+...+..+++..+ +.|..+|+
T Consensus 139 gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~gvl~al~----~~gl~vP~ 206 (269)
T cd06287 139 AYRAFAAEHGMPPVVLRVDEAGGEEAGYAACAQLLAQHPDLDALCVPVDAFAVGAVRAAT----ELGRAVPD 206 (269)
T ss_pred HHHHHHHHcCCCcceeEecCCCChHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHH----HcCCCCCC
Confidence 35566778888642221 1121 344556544 479999998888888877655 67777774
No 449
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=33.56 E-value=1.7e+02 Score=24.20 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=22.5
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
-.++.++..|..+++.+ .+++..+.+.++|++.++.
T Consensus 181 ~a~~~a~~~G~~vi~~~-~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 181 YMVQTAKAMGAAVVAID-IDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHHHHHHcCCeEEEEc-CCHHHHHHHHHhCCceEec
Confidence 44667777777655533 3555666666777776653
No 450
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=33.51 E-value=2.4e+02 Score=22.20 Aligned_cols=132 Identities=10% Similarity=0.076 Sum_probs=73.7
Q ss_pred CHHHHHHHHhcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEE-EeeCHHHHHHHHhhc-cCCeEEEEEEecCC
Q 028497 43 TIEDALTLVSNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLV-WAKSDNLVRDIMRLS-SNVTAGYIIMVDPS 120 (208)
Q Consensus 43 tL~evL~~~~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii-~Sf~~~~l~~l~~~~-p~~~~~~l~~~~~~ 120 (208)
.+.++++.+.+.. .+.+|+-..+. .++++.-.++.+- . ++.+| .=...+-++.++.+. -++++....-+.+.
T Consensus 42 ~~~~i~~~~~~~~-~v~~qv~~~d~---e~mi~eA~~l~~~-~-~nv~IKIP~T~~Gl~Ai~~L~~~GI~vn~T~vfs~~ 115 (220)
T PRK12655 42 VLPRLQKAIGGEG-ILFAQTMSRDA---QGMVEEAKRLRNA-I-PGIVVKIPVTAEGLAAIKKLKKEGIPTLGTAVYSAA 115 (220)
T ss_pred HHHHHHHHhCCCC-CEEEEEeeCCH---HHHHHHHHHHHHh-C-CCEEEEeCCCHHHHHHHHHHHHCCCceeEeEecCHH
Confidence 3455555554332 68889876531 2444443333222 2 35555 445555566666553 36777554433222
Q ss_pred CchhhhHhhhhcCceEeecccccC----------HHHHHHHHhCCC--eEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 121 TGFRTNLLRIRKAGVVGVYHPLID----------EKLVRTFHGRNK--RVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~g~--~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
+ .-++...|+++++++.+-++ .++.+.++.+|. ++..=.+.+..++-.+...|+|.++--
T Consensus 116 Q---a~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G~d~vTip 187 (220)
T PRK12655 116 Q---GLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAASFKTPRQALDCLLAGCQSITLP 187 (220)
T ss_pred H---HHHHHHcCCeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcCCCEEECC
Confidence 2 11233478888887654221 233444555544 555567889999999999999988653
No 451
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=33.40 E-value=74 Score=25.13 Aligned_cols=37 Identities=19% Similarity=0.451 Sum_probs=30.0
Q ss_pred HHHHHHhCCCeEE--EeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 147 LVRTFHGRNKRVF--AWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 147 ~v~~~~~~g~~v~--~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
+=+-|.+.|++++ .|..|..+-+..++..|-+.+|+-
T Consensus 104 ve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~ 142 (223)
T COG2102 104 VERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAIIVA 142 (223)
T ss_pred HHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEEEE
Confidence 3345788999886 499999999999999998888864
No 452
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=33.36 E-value=2.6e+02 Score=22.56 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=56.7
Q ss_pred HhcCCcceEEE-e-eCHHHHHHHHhhccCCeEEEEEEecCCCchhhhHhh--hhcCceEeeccccc-----C----HHHH
Q 028497 82 ERTKCYNCLVW-A-KSDNLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLR--IRKAGVVGVYHPLI-----D----EKLV 148 (208)
Q Consensus 82 ~~~~~~~~ii~-S-f~~~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~----~~~v 148 (208)
+.+|..-+.++ + .+.+.+..+.+..-.+-+-.+...+. ..++.+ ..|+++++++...+ + .++.
T Consensus 128 ~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~----~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~ 203 (254)
T PF00218_consen 128 RAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHN----EEELERALEAGADIIGINNRDLKTFEVDLNRTEELA 203 (254)
T ss_dssp HHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESS----HHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHH
T ss_pred HHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECC----HHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHH
Confidence 34565444333 3 36666777777655555555665432 123322 37888888765321 1 2334
Q ss_pred HHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 149 RTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 149 ~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
..+-..-+.|.--++++++++.++...|+|+|.--
T Consensus 204 ~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 204 PLIPKDVIVISESGIKTPEDARRLARAGADAVLVG 238 (254)
T ss_dssp CHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEES
T ss_pred hhCccceeEEeecCCCCHHHHHHHHHCCCCEEEEC
Confidence 44445556666778999999999999999998753
No 453
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=33.35 E-value=77 Score=25.39 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=36.7
Q ss_pred HHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC-ChHHHHHHHHH
Q 028497 146 KLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS-NPILFQRVMQD 194 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD-~P~~~~~~~~~ 194 (208)
..+.+++.+|+....++. +++..++++++|+..+.+- +-..+.+..+.
T Consensus 200 ~~~~~i~aaGKaagil~~-~p~~a~~yl~lGa~fvavG~D~~l~~~a~~~ 248 (255)
T COG3836 200 HIIARIRAAGKAAGILAA-DPADARRYLALGATFVAVGSDTGLLRRAAEA 248 (255)
T ss_pred HHHHHHHhcCCccccccC-CHHHHHHHHHhCCeEEEEeccHHHHHHHHHH
Confidence 456778899999999997 7779999999999998765 44444444443
No 454
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=33.34 E-value=1.2e+02 Score=24.41 Aligned_cols=37 Identities=3% Similarity=0.132 Sum_probs=21.3
Q ss_pred CCHHHHHHHHhc-------CCceEEEEeecCCCCCchhHHHHHHHHHHh
Q 028497 42 TTIEDALTLVSN-------SVRKVILDAKVGPPSYEKGLAKDILSVIER 83 (208)
Q Consensus 42 ptL~evL~~~~~-------~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~ 83 (208)
.+|+|++..+++ .++.|.||.-... +.-..+++++++
T Consensus 70 i~f~dv~~~I~~~AF~~S~yPvIlslE~Hcs~-----~qQ~~ma~~l~~ 113 (254)
T cd08596 70 IPFKDVVEAINRSAFITSDYPVILSIENHCSL-----QQQRKMAEIFKT 113 (254)
T ss_pred cCHHHHHHHHHHHhccCCCCCEEEEecccCCH-----HHHHHHHHHHHH
Confidence 458888887765 3446667766542 333445555544
No 455
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=33.16 E-value=1.9e+02 Score=23.43 Aligned_cols=59 Identities=5% Similarity=0.032 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCeEE---EeeCC-C----HHHHHHHHhCCCCEEEcCChHHHHHHHHHHHhhhhhcCccccC
Q 028497 146 KLVRTFHGRNKRVF---AWTVD-D----EDSMRKMLHERVDAVVTSNPILFQRVMQDIRTQCLEEGFSLIR 208 (208)
Q Consensus 146 ~~v~~~~~~g~~v~---~wtv~-~----~~~~~~~~~~gvd~i~TD~P~~~~~~~~~~~~~~~~~~~~~~~ 208 (208)
.+.+.+.++|+.+. ++..+ + ...++++++.++++|++.+-..+..+++..+ +.|..+|+
T Consensus 198 Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~ai~~~~d~~A~g~~~al~----~~g~~vP~ 264 (329)
T TIGR01481 198 GYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGSLPTAVFVASDEMAAGILNAAM----DAGIKVPE 264 (329)
T ss_pred HHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHHHH----HcCCCCCC
Confidence 35566788887642 22222 2 2345666677899999988888777777655 56666663
No 456
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=33.12 E-value=1.1e+02 Score=25.24 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=36.7
Q ss_pred cCHHHHHHHHhC-CCeEE---EeeCCCHHHHHHHHhCCCCEEEc-------CChHHHHHHHH
Q 028497 143 IDEKLVRTFHGR-NKRVF---AWTVDDEDSMRKMLHERVDAVVT-------SNPILFQRVMQ 193 (208)
Q Consensus 143 ~~~~~v~~~~~~-g~~v~---~wtv~~~~~~~~~~~~gvd~i~T-------D~P~~~~~~~~ 193 (208)
.+.++++.+++. +++|. .=.+.+++++..++++|+++|.. ++|....+.+.
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv 251 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIV 251 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHH
Confidence 455777877765 57875 33578999999999999999753 46666555443
No 457
>PRK05660 HemN family oxidoreductase; Provisional
Probab=33.01 E-value=1.2e+02 Score=25.93 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=35.0
Q ss_pred HHHHHHHHhcC-----CceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceE--EEeeCHHHHHHHHh
Q 028497 44 IEDALTLVSNS-----VRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCL--VWAKSDNLVRDIMR 104 (208)
Q Consensus 44 L~evL~~~~~~-----~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~i--i~Sf~~~~l~~l~~ 104 (208)
|+++++.++.. ...+.+|.-+. .+....++.+++.|..+.. +.||+++.++.+.+
T Consensus 77 l~~ll~~l~~~~~~~~~~eit~e~np~------~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r 138 (378)
T PRK05660 77 IQRLLDGVRARLPFAPDAEITMEANPG------TVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGR 138 (378)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEeCcC------cCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCC
Confidence 46666666542 23667776443 2334567788899987654 58999887765544
No 458
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=33.00 E-value=3e+02 Score=23.18 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=39.9
Q ss_pred CHHHHHHHHhC-CCeEEEe-eCCCHHHHHHHHhCCCCEEEc-------CChHHHHHHHH
Q 028497 144 DEKLVRTFHGR-NKRVFAW-TVDDEDSMRKMLHERVDAVVT-------SNPILFQRVMQ 193 (208)
Q Consensus 144 ~~~~v~~~~~~-g~~v~~w-tv~~~~~~~~~~~~gvd~i~T-------D~P~~~~~~~~ 193 (208)
+++.++...+. .++|.+- ++.+++++..++++|+||+.. ++|..+.++++
T Consensus 237 ~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~ 295 (326)
T PRK11840 237 NPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMK 295 (326)
T ss_pred CHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHH
Confidence 67777765544 6777765 678999999999999999876 48988888876
No 459
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=32.93 E-value=1.5e+02 Score=22.13 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHHH-hCCCCEEEc---CChHHHHHHHHHH
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKML-HERVDAVVT---SNPILFQRVMQDI 195 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~~-~~gvd~i~T---D~P~~~~~~~~~~ 195 (208)
..-++.++++|+++.+-|-+....+...+ .+|++.+.+ +.|..+.++++++
T Consensus 54 ~~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~~f~g~~~k~~~l~~~~~~~ 108 (183)
T PRK09484 54 GYGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITHLYQGQSNKLIAFSDLLEKL 108 (183)
T ss_pred hHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCceeecCCCcHHHHHHHHHHHh
Confidence 45678888999999988877666555544 567776665 3556666666544
No 460
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=32.88 E-value=2.7e+02 Score=22.57 Aligned_cols=78 Identities=10% Similarity=0.029 Sum_probs=47.5
Q ss_pred HHHHHHhhcc-CCeEEEEEEecCCCchhhhHh--hhhcCceEeecccccCHHHHHH----HHhC-CCeEEEeeCCCHHHH
Q 028497 98 LVRDIMRLSS-NVTAGYIIMVDPSTGFRTNLL--RIRKAGVVGVYHPLIDEKLVRT----FHGR-NKRVFAWTVDDEDSM 169 (208)
Q Consensus 98 ~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~----~~~~-g~~v~~wtv~~~~~~ 169 (208)
.++.+|+..| +.++++-... + .+.. -..|+|++.... ++++.++. ++.. .+++.+=+.-+.+.+
T Consensus 170 ~v~~~r~~~~~~~~I~vev~t-~-----eea~~A~~~gaD~I~ld~--~~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni 241 (269)
T cd01568 170 AVKRARAAAPFEKKIEVEVET-L-----EEAEEALEAGADIIMLDN--MSPEELKEAVKLLKGLPRVLLEASGGITLENI 241 (269)
T ss_pred HHHHHHHhCCCCCeEEEecCC-H-----HHHHHHHHcCCCEEEECC--CCHHHHHHHHHHhccCCCeEEEEECCCCHHHH
Confidence 4677777766 5666644431 1 1221 236788776532 33343333 2221 566677666688999
Q ss_pred HHHHhCCCCEEEcC
Q 028497 170 RKMLHERVDAVVTS 183 (208)
Q Consensus 170 ~~~~~~gvd~i~TD 183 (208)
..+.+.|||+|-+-
T Consensus 242 ~~~a~~Gad~Isvg 255 (269)
T cd01568 242 RAYAETGVDVISTG 255 (269)
T ss_pred HHHHHcCCCEEEEc
Confidence 99999999999763
No 461
>PRK09206 pyruvate kinase; Provisional
Probab=32.84 E-value=1.9e+02 Score=25.69 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=45.5
Q ss_pred cCHHHHHHHHhCCCeEEEeeC------C-------CHHHHHHHHhCCCCEEEc-------CChHHHHHHHHHHHhhhh
Q 028497 143 IDEKLVRTFHGRNKRVFAWTV------D-------DEDSMRKMLHERVDAVVT-------SNPILFQRVMQDIRTQCL 200 (208)
Q Consensus 143 ~~~~~v~~~~~~g~~v~~wtv------~-------~~~~~~~~~~~gvd~i~T-------D~P~~~~~~~~~~~~~~~ 200 (208)
+-+.+++.++++|++|.+=|- + +..++..++.-|+|+|+- .||.++.+.+++.....+
T Consensus 259 ~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~~E 336 (470)
T PRK09206 259 AQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTD 336 (470)
T ss_pred HHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHH
Confidence 446778889999999998771 2 235777888899999987 799999999987755444
No 462
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=32.76 E-value=80 Score=25.06 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcC
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD 183 (208)
-++++.+|+.++..-.|. .+.++.+.+-+.|+|.|..+
T Consensus 146 vemlr~A~~k~l~t~~yV-~s~~eAqa~~~aGadiiv~h 183 (276)
T COG5564 146 VEMLREAHAKDLLTTPYV-FSFEEAQAMTKAGADIIVAH 183 (276)
T ss_pred HHHHHHHHhcccccccee-cCHHHHHHHHHcCcceeeec
Confidence 467899999999887776 47788899999997776543
No 463
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=32.72 E-value=2e+02 Score=22.68 Aligned_cols=63 Identities=8% Similarity=0.042 Sum_probs=38.5
Q ss_pred hcCceEeec------cc--ccCHHHHHHHHhCC----CeEEEeeCCCHHHHHHHHhCCCCEEE-----cCChHHHHHHHH
Q 028497 131 RKAGVVGVY------HP--LIDEKLVRTFHGRN----KRVFAWTVDDEDSMRKMLHERVDAVV-----TSNPILFQRVMQ 193 (208)
Q Consensus 131 ~~~~~~~~~------~~--~~~~~~v~~~~~~g----~~v~~wtv~~~~~~~~~~~~gvd~i~-----TD~P~~~~~~~~ 193 (208)
.|++++++. .+ .+.+..++.+++.. +.|+.-+.|...-++.+.+.|+|.|+ |++|..+.+.++
T Consensus 28 ~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir 107 (223)
T PRK08745 28 AGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIK 107 (223)
T ss_pred cCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHH
Confidence 567777652 12 23577888887753 44555555555567778888999887 344544444444
No 464
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=32.72 E-value=1.5e+02 Score=23.60 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=40.4
Q ss_pred hcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChHHHHHHHHHH
Q 028497 131 RKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPILFQRVMQDI 195 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~~~~~~~~~~ 195 (208)
..+|.+-..........++.+.+.|++|++....+.+++...+.. =|-+++.++.+.+++++.
T Consensus 71 l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~--lg~~~g~~~~A~~li~~~ 133 (260)
T PRK03379 71 LKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQ--LAPWSPQPEKAEQAAQSL 133 (260)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHH--HHHHcCCHHHHHHHHHHH
Confidence 678866443222235678899999999988766666665554432 124457777777776644
No 465
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=32.59 E-value=1.3e+02 Score=21.91 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=35.6
Q ss_pred HhhhhcCceEeeccccc-----CHHHHHHHHhC--CCeEEEeeCCCHH-HHHHHHhCCCCEEEcC
Q 028497 127 LLRIRKAGVVGVYHPLI-----DEKLVRTFHGR--NKRVFAWTVDDED-SMRKMLHERVDAVVTS 183 (208)
Q Consensus 127 ~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~--g~~v~~wtv~~~~-~~~~~~~~gvd~i~TD 183 (208)
..+..|++++.++.... ..+.++.+++. ++++.+-.....+ ....+.+.|+++|..+
T Consensus 79 ~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~ 143 (200)
T cd04722 79 AARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLG 143 (200)
T ss_pred HHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEc
Confidence 44557888887665543 45677777776 7777665432221 1112678899999765
No 466
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=32.50 E-value=3.3e+02 Score=23.50 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCeEEEeeCCCHH-HHHHHHhCCCCEEEcC
Q 028497 145 EKLVRTFHGRNKRVFAWTVDDED-SMRKMLHERVDAVVTS 183 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~~~~-~~~~~~~~gvd~i~TD 183 (208)
+++.+.++++|..+.|-+|-+-. +--+.-++|||.++|-
T Consensus 151 ~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itg 190 (383)
T COG0075 151 KEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITG 190 (383)
T ss_pred HHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEec
Confidence 35667788888888888776522 2233446788888775
No 467
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=32.46 E-value=1.2e+02 Score=23.10 Aligned_cols=35 Identities=6% Similarity=0.029 Sum_probs=26.2
Q ss_pred CHHHHHHHHhCCCeEEEeeCCCHHHHHHHHh-CCCC
Q 028497 144 DEKLVRTFHGRNKRVFAWTVDDEDSMRKMLH-ERVD 178 (208)
Q Consensus 144 ~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~-~gvd 178 (208)
+.+.++.++++|+++.+-|.+....++.+++ +|.+
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 3567888899999999999888877766553 4544
No 468
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=32.42 E-value=1.4e+02 Score=25.29 Aligned_cols=40 Identities=10% Similarity=0.029 Sum_probs=32.8
Q ss_pred ccCHHHHHHHHh-CCCeEEEeeCCCHHHHHHHHhCCCCEEE
Q 028497 142 LIDEKLVRTFHG-RNKRVFAWTVDDEDSMRKMLHERVDAVV 181 (208)
Q Consensus 142 ~~~~~~v~~~~~-~g~~v~~wtv~~~~~~~~~~~~gvd~i~ 181 (208)
..+.+.++.+++ -++++.+=++.+.++++.+.+.|||+|+
T Consensus 199 ~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~ 239 (344)
T cd02922 199 TLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIV 239 (344)
T ss_pred CCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEE
Confidence 345666777775 5588888889999999999999999987
No 469
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=32.40 E-value=2.8e+02 Score=22.74 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=57.6
Q ss_pred eEEEEeecCCCCC-chhHHHHHHHHHHhcCCc--ceEEEeeC-----H---HHHHHHHhhccCCeEEEEEEecCCCchhh
Q 028497 57 KVILDAKVGPPSY-EKGLAKDILSVIERTKCY--NCLVWAKS-----D---NLVRDIMRLSSNVTAGYIIMVDPSTGFRT 125 (208)
Q Consensus 57 ~l~lEiK~~~~~~-~~~~~~~v~~~l~~~~~~--~~ii~Sf~-----~---~~l~~l~~~~p~~~~~~l~~~~~~~~~~~ 125 (208)
-++|--|-.+..+ .....+.+-+.+++.|.. +...+.+- . +.++.+.++..+-++-.+==+++.....+
T Consensus 70 elFittKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~ 149 (280)
T COG0656 70 ELFITTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLE 149 (280)
T ss_pred HeEEEeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHH
Confidence 6888888766432 236777777788888864 33332221 1 45555555433322222211122221223
Q ss_pred hHhhhhcC----ceEeecccccCHHHHHHHHhCCCeEEEeeC
Q 028497 126 NLLRIRKA----GVVGVYHPLIDEKLVRTFHGRNKRVFAWTV 163 (208)
Q Consensus 126 ~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv 163 (208)
++.+..+. +-+.++-.+-.++++..++++|+.|.+|+.
T Consensus 150 ~l~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysP 191 (280)
T COG0656 150 ELLSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSP 191 (280)
T ss_pred HHHHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECC
Confidence 34333222 122222234456899999999999999974
No 470
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.29 E-value=1.9e+02 Score=20.79 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCCeEEEe---e--CCCHHH----HHHHHhCCCCEEEcC--ChHHHHHHHHH
Q 028497 145 EKLVRTFHGRNKRVFAW---T--VDDEDS----MRKMLHERVDAVVTS--NPILFQRVMQD 194 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~w---t--v~~~~~----~~~~~~~gvd~i~TD--~P~~~~~~~~~ 194 (208)
+++++.++++|+.-..| + +..+++ ..++.++|++.++.- .|+.+..++++
T Consensus 70 ~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 70 KGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred HHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHH
Confidence 56778888888743333 2 122333 456899999999984 66777776664
No 471
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=32.18 E-value=1.1e+02 Score=23.79 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=20.0
Q ss_pred HHHHHhC-CCeEEEeeCC-CH----HHHHHHHhCCCCEEEcC
Q 028497 148 VRTFHGR-NKRVFAWTVD-DE----DSMRKMLHERVDAVVTS 183 (208)
Q Consensus 148 v~~~~~~-g~~v~~wtv~-~~----~~~~~~~~~gvd~i~TD 183 (208)
-+.+.+. |+.+.+++.+ +. +.++.++..++|||+.-
T Consensus 22 ~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~ 63 (270)
T cd06308 22 QREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIIS 63 (270)
T ss_pred HHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3445554 6777666542 22 23455556677777664
No 472
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.18 E-value=1.8e+02 Score=22.91 Aligned_cols=51 Identities=2% Similarity=0.113 Sum_probs=36.7
Q ss_pred HHHHHHH-HhCCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHH
Q 028497 145 EKLVRTF-HGRNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDI 195 (208)
Q Consensus 145 ~~~v~~~-~~~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~ 195 (208)
.++++.+ +.-++++.+= ++++.+++++++..|++-++-+ +|+.+.++.+++
T Consensus 65 ~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~f 122 (234)
T PRK13587 65 FDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTF 122 (234)
T ss_pred HHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHc
Confidence 4556554 4456676553 5889999999999999998866 677777766554
No 473
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=32.07 E-value=1.4e+02 Score=25.18 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=36.1
Q ss_pred HHHHHHHHhcC---CceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceE--EEeeCHHHHHHHHh
Q 028497 44 IEDALTLVSNS---VRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCL--VWAKSDNLVRDIMR 104 (208)
Q Consensus 44 L~evL~~~~~~---~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~i--i~Sf~~~~l~~l~~ 104 (208)
|+++++.+... ...+.+|.-+. .+....++.+++.|..+.. ++||+++.++.+.+
T Consensus 70 l~~ll~~i~~~~~~~~eitiE~nP~------~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR 129 (350)
T PRK08446 70 YEPIFEIISPYLSKDCEITTEANPN------SATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGR 129 (350)
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCC------CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 67888777542 23566776443 2335667888999987653 58998877765543
No 474
>PRK06801 hypothetical protein; Provisional
Probab=31.99 E-value=2.5e+02 Score=23.05 Aligned_cols=69 Identities=9% Similarity=0.101 Sum_probs=45.3
Q ss_pred hHhhhhcCceEeec-------c---cccCHHHHHHHHhC-CCeEEEeeC--CCHHHHHHHHhCCCCEEE--cCChHHHHH
Q 028497 126 NLLRIRKAGVVGVY-------H---PLIDEKLVRTFHGR-NKRVFAWTV--DDEDSMRKMLHERVDAVV--TSNPILFQR 190 (208)
Q Consensus 126 ~~~~~~~~~~~~~~-------~---~~~~~~~v~~~~~~-g~~v~~wtv--~~~~~~~~~~~~gvd~i~--TD~P~~~~~ 190 (208)
++.+..|+|++++. + +.++.+.++.+++. ++++..=+. -+.++++++++.|++.|- |+.-....+
T Consensus 163 ~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~a~~~ 242 (286)
T PRK06801 163 DFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQAALA 242 (286)
T ss_pred HHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHHHHHH
Confidence 34455788887762 2 13566777777654 678777655 568899999999999864 444444444
Q ss_pred HHHH
Q 028497 191 VMQD 194 (208)
Q Consensus 191 ~~~~ 194 (208)
.+++
T Consensus 243 ~~~~ 246 (286)
T PRK06801 243 AVEQ 246 (286)
T ss_pred HHHH
Confidence 4443
No 475
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=31.88 E-value=51 Score=25.91 Aligned_cols=33 Identities=15% Similarity=0.373 Sum_probs=22.3
Q ss_pred HHHhCCCeEEE--eeCCCHHHHHHHHhCCCCEEEc
Q 028497 150 TFHGRNKRVFA--WTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 150 ~~~~~g~~v~~--wtv~~~~~~~~~~~~gvd~i~T 182 (208)
.+.+.|+.++. |..+..+-++.+++.|.+.+|+
T Consensus 106 vc~~lGl~~~~PLW~~d~~~ll~e~i~~Gf~aiIv 140 (218)
T PF01902_consen 106 VCERLGLEAVFPLWGRDREELLREFIESGFEAIIV 140 (218)
T ss_dssp HHHHCT-EEE-TTTT--HHHHHHHHHHTT-EEEEE
T ss_pred HHHHcCCEEEecccCCCHHHHHHHHHHCCCeEEEE
Confidence 46778888764 7877777888888888888877
No 476
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=31.84 E-value=1.4e+02 Score=24.00 Aligned_cols=57 Identities=9% Similarity=0.130 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCeEEEe-eCCC-HHHHHHHHhC---------------CCCEEEcCChHHHHHHHHHHHhhhhhc
Q 028497 146 KLVRTFHGRNKRVFAW-TVDD-EDSMRKMLHE---------------RVDAVVTSNPILFQRVMQDIRTQCLEE 202 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~w-tv~~-~~~~~~~~~~---------------gvd~i~TD~P~~~~~~~~~~~~~~~~~ 202 (208)
+.++.+.++++.=.+. +... .+.+..+.+. +++.|.+|+-+....+.+.+....+++
T Consensus 47 ~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~~ 120 (279)
T PF00532_consen 47 EYIELLLQRRVDGIILASSENDDEELRRLIKSGIPVVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHRR 120 (279)
T ss_dssp HHHHHHHHTTSSEEEEESSSCTCHHHHHHHHTTSEEEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHhcCCCEEEEecccCChHHHHHHHHcCCCEEEEEeccCCcccCCEEEEcchHHHHHHHHHHHhcccCC
Confidence 5566666666653333 3322 2455555543 345566665556666666665555544
No 477
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=31.75 E-value=81 Score=24.67 Aligned_cols=38 Identities=11% Similarity=0.306 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCeEEEeeCC-CH----HHHHHHHhCCCCEEEc
Q 028497 145 EKLVRTFHGRNKRVFAWTVD-DE----DSMRKMLHERVDAVVT 182 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~-~~----~~~~~~~~~gvd~i~T 182 (208)
..+.+.++++|+.+.+.... +. +.++.++..+||||+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~ 61 (273)
T cd01541 19 RGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLII 61 (273)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34456667777777654332 22 3455666777777765
No 478
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=31.73 E-value=1.6e+02 Score=19.54 Aligned_cols=36 Identities=6% Similarity=0.022 Sum_probs=22.8
Q ss_pred eEEEEeecCCCCCchhHHHHHHHHHHhcCCcceEEEe
Q 028497 57 KVILDAKVGPPSYEKGLAKDILSVIERTKCYNCLVWA 93 (208)
Q Consensus 57 ~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~ii~S 93 (208)
.+.||+|.+..... ..-...++.+++.|..-.++.|
T Consensus 63 ~~~iEvK~p~~~ls-~~Q~~~~~~l~~~G~~v~V~~~ 98 (100)
T PF08774_consen 63 FLFIEVKGPGDRLS-PNQKEWIDKLREAGFRVAVCRS 98 (100)
T ss_pred EEEEEEcCCCCCcC-HHHHHHHHHHHHCCCEEEEEEc
Confidence 68999999875443 3334556777777764334444
No 479
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=31.66 E-value=77 Score=21.92 Aligned_cols=20 Identities=0% Similarity=-0.115 Sum_probs=9.2
Q ss_pred ccCHHHHHHHHhCCCeEEEe
Q 028497 142 LIDEKLVRTFHGRNKRVFAW 161 (208)
Q Consensus 142 ~~~~~~v~~~~~~g~~v~~w 161 (208)
.++++-++.+++.|++..+-
T Consensus 14 Q~~~~d~~~la~~GfktVIn 33 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVIN 33 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE
T ss_pred CCCHHHHHHHHHCCCcEEEE
Confidence 34555556666666665554
No 480
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=31.56 E-value=1.1e+02 Score=26.73 Aligned_cols=56 Identities=9% Similarity=0.152 Sum_probs=34.9
Q ss_pred CHHHHHHHHhcC-----CceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceE--EEeeCHHHHHHHHh
Q 028497 43 TIEDALTLVSNS-----VRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCL--VWAKSDNLVRDIMR 104 (208)
Q Consensus 43 tL~evL~~~~~~-----~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~i--i~Sf~~~~l~~l~~ 104 (208)
.|+++++.++.. +..+.+|.-.. .+.+..++.++++|..+.. +.|++++.++.+.+
T Consensus 120 ~l~~ll~~l~~~~~~~~~~e~tie~np~------~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r 182 (453)
T PRK09249 120 QLRRLMALLREHFNFAPDAEISIEIDPR------ELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNR 182 (453)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEecCC------cCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCC
Confidence 347777776543 23566665432 3445677889999986654 47888776655443
No 481
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.53 E-value=2.4e+02 Score=22.58 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=0.0
Q ss_pred CHHHHHHHHh-CCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC-----ChHHHHHHHHHHHhhh
Q 028497 144 DEKLVRTFHG-RNKRVFAW-TVDDEDSMRKMLHERVDAVVTS-----NPILFQRVMQDIRTQC 199 (208)
Q Consensus 144 ~~~~v~~~~~-~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD-----~P~~~~~~~~~~~~~~ 199 (208)
+.++++.+.+ .++++.+= ++++.+++++++..|+++|+.+ +|..+.++.+....++
T Consensus 62 n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~ 124 (258)
T PRK01033 62 NYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQS 124 (258)
T ss_pred cHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCc
No 482
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=31.52 E-value=1.2e+02 Score=24.79 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHhcCC--ceEEEEeecCCCCCchhHHHHHHHHHHhcCC
Q 028497 41 ITTIEDALTLVSNSV--RKVILDAKVGPPSYEKGLAKDILSVIERTKC 86 (208)
Q Consensus 41 iptL~evL~~~~~~~--~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~ 86 (208)
-||+.|+-+.+.=.. +.-.|- ... .-.++.-++|.+++++.|+
T Consensus 5 ~~ti~dIA~~agVS~~TVSrvLn--~~~-~vs~~tr~rV~~~a~elgY 49 (331)
T PRK14987 5 RPVLQDVADRVGVTKMTVSRFLR--NPE-QVSVALRGKIAAALDELGY 49 (331)
T ss_pred CCcHHHHHHHhCCCHHHhhhhhC--CCC-CCCHHHHHHHHHHHHHhCC
Confidence 478888877763210 011111 111 1124777889999999885
No 483
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=31.40 E-value=1.7e+02 Score=23.57 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCeEEEeeCC-CH----HHHHHHHhCCCCEEEcC
Q 028497 145 EKLVRTFHGRNKRVFAWTVD-DE----DSMRKMLHERVDAVVTS 183 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~-~~----~~~~~~~~~gvd~i~TD 183 (208)
..+-+.+++.|+.+.+.+.+ +. ..++.++..+||||+-.
T Consensus 18 ~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~ 61 (302)
T TIGR02634 18 DIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVII 61 (302)
T ss_pred HHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 34455566666666555433 21 23444555666666654
No 484
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=31.39 E-value=1.3e+02 Score=25.89 Aligned_cols=56 Identities=20% Similarity=0.148 Sum_probs=36.1
Q ss_pred CHHHHHHHHhcC-----CceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceE--EEeeCHHHHHHHHh
Q 028497 43 TIEDALTLVSNS-----VRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCL--VWAKSDNLVRDIMR 104 (208)
Q Consensus 43 tL~evL~~~~~~-----~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~i--i~Sf~~~~l~~l~~ 104 (208)
.|+++++.+... ...+-+|.-.. .+....++.+++.|..+.. ++||+++.++.+.+
T Consensus 84 ~l~~ll~~i~~~~~~~~~~eit~E~~P~------~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R 146 (400)
T PRK07379 84 QLERILTTLDQRFGIAPDAEISLEIDPG------TFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGR 146 (400)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeCCC------cCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCC
Confidence 357777776542 12566675443 2334567888999987654 58999887766544
No 485
>PLN02692 alpha-galactosidase
Probab=31.22 E-value=1e+02 Score=26.81 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCCeEEEeeCC---------------CHHHHHHHHhCCCCEEEcCCh
Q 028497 145 EKLVRTFHGRNKRVFAWTVD---------------DEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~---------------~~~~~~~~~~~gvd~i~TD~P 185 (208)
+.+.+++|++|++..+|+-. .+.+++.+.+.|||.|=-|..
T Consensus 124 k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~DA~~fA~WGvDylK~D~C 179 (412)
T PLN02692 124 KALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNC 179 (412)
T ss_pred HHHHHHHHHCCCceEEEecCCccccCCCCCCchHHHHHHHHHHHhcCCCEEecccc
Confidence 67889999999999999632 134678888999999998864
No 486
>PF14057 GGGtGRT: GGGtGRT protein
Probab=31.17 E-value=38 Score=27.19 Aligned_cols=75 Identities=28% Similarity=0.427 Sum_probs=48.5
Q ss_pred hhhcCceEeecccccCHHH-----HHHHHhCCCeEEEeeCCCH-HHHHHHHhCCCCEEEcC---ChHHHHHHHH-HHHhh
Q 028497 129 RIRKAGVVGVYHPLIDEKL-----VRTFHGRNKRVFAWTVDDE-DSMRKMLHERVDAVVTS---NPILFQRVMQ-DIRTQ 198 (208)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~-----v~~~~~~g~~v~~wtv~~~-~~~~~~~~~gvd~i~TD---~P~~~~~~~~-~~~~~ 198 (208)
+..|..++...+.+.+.++ ..+-....-+|.+|+.||. +...-|..-+||.=||- +|..++..+. .+++.
T Consensus 164 RinGFTyV~T~fdy~tg~l~~v~~~~ys~g~ra~v~cyGaddVrEGVAim~~E~VdvSITGNSTNptRFQHpvaGtYKke 243 (328)
T PF14057_consen 164 RINGFTYVQTQFDYYTGELKVVEEKAYSDGERAKVKCYGADDVREGVAIMHHEGVDVSITGNSTNPTRFQHPVAGTYKKE 243 (328)
T ss_pred HhcCceEEEEeeccccceeEEEEEeecCCCCcceeEeccccchhhhhhhhhhcCCceEEecCCCCCcccccccchhhHHH
Confidence 3344444444444444332 1122233456788999884 56777888899998886 6777776665 47889
Q ss_pred hhhcC
Q 028497 199 CLEEG 203 (208)
Q Consensus 199 ~~~~~ 203 (208)
|.+.|
T Consensus 244 ~~e~g 248 (328)
T PF14057_consen 244 CIEQG 248 (328)
T ss_pred HHHcC
Confidence 99888
No 487
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=31.17 E-value=2.4e+02 Score=23.50 Aligned_cols=56 Identities=7% Similarity=-0.037 Sum_probs=40.1
Q ss_pred CceEeecccccCHHHHHHHHhCCC-eEEEeeCCCHHHHHHHHhCC-CCEEEcCChHHH
Q 028497 133 AGVVGVYHPLIDEKLVRTFHGRNK-RVFAWTVDDEDSMRKMLHER-VDAVVTSNPILF 188 (208)
Q Consensus 133 ~~~~~~~~~~~~~~~v~~~~~~g~-~v~~wtv~~~~~~~~~~~~g-vd~i~TD~P~~~ 188 (208)
++.+-..........++.++++|+ +|.+.+++.+..+..+++.| +++++..+|..+
T Consensus 210 i~aI~~~~~~~~~Ga~~Al~~~g~~~v~VvG~D~~~~~~~~i~~G~i~~~~~~~p~~~ 267 (336)
T PRK15408 210 LDAIIAPDANALPAAAQAAENLKRDKVAIVGFSTPNVMRPYVKRGTVKEFGLWDVVQQ 267 (336)
T ss_pred CcEEEECCCccHHHHHHHHHhCCCCCEEEEEeCCcHHHHHHHhcCCcceEEecCHHHH
Confidence 344333333333457788888876 58888999999999999888 788888888764
No 488
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=31.07 E-value=1.4e+02 Score=23.21 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=31.3
Q ss_pred cCHHHHHHHHh-CCCeEEEe-eCCCHHHHHHHHhCCCCEEEcC
Q 028497 143 IDEKLVRTFHG-RNKRVFAW-TVDDEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 143 ~~~~~v~~~~~-~g~~v~~w-tv~~~~~~~~~~~~gvd~i~TD 183 (208)
.+.++++.+.+ .++++.+- ++.+.++++++.+.|+++++..
T Consensus 176 ~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 176 PNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 34566666655 46777665 5889999999999999999864
No 489
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=30.94 E-value=2.5e+02 Score=21.64 Aligned_cols=82 Identities=20% Similarity=0.082 Sum_probs=48.2
Q ss_pred HHHHHHHhhccCCeEEEEEEecCCCchhhhHhhhhcCceEeec-cc---------ccCHHHHHHHHh-CCCeEEE-eeCC
Q 028497 97 NLVRDIMRLSSNVTAGYIIMVDPSTGFRTNLLRIRKAGVVGVY-HP---------LIDEKLVRTFHG-RNKRVFA-WTVD 164 (208)
Q Consensus 97 ~~l~~l~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~v~~~~~-~g~~v~~-wtv~ 164 (208)
+.++++++.. ++++..-.. +..........|++++.+. .. ..+.+.++.+++ .++++.+ -++.
T Consensus 113 ~~i~~~~~~g-~~~iiv~v~----t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~ 187 (219)
T cd04729 113 ELIKRIHEEY-NCLLMADIS----TLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHHh-CCeEEEECC----CHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCC
Confidence 4566676655 455532111 1111112233678877542 10 122356666654 3777765 5678
Q ss_pred CHHHHHHHHhCCCCEEEcC
Q 028497 165 DEDSMRKMLHERVDAVVTS 183 (208)
Q Consensus 165 ~~~~~~~~~~~gvd~i~TD 183 (208)
+.++++++++.|+|+++--
T Consensus 188 ~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 188 SPEQAAKALELGADAVVVG 206 (219)
T ss_pred CHHHHHHHHHCCCCEEEEc
Confidence 9999999999999998754
No 490
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=30.90 E-value=3.2e+02 Score=22.86 Aligned_cols=112 Identities=8% Similarity=-0.013 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhcCCcceEEEe-----eCHH---HHHHHHhhccCCeEEEEEEec-CCCchhhhH---hhhhcCceEeec
Q 028497 72 GLAKDILSVIERTKCYNCLVWA-----KSDN---LVRDIMRLSSNVTAGYIIMVD-PSTGFRTNL---LRIRKAGVVGVY 139 (208)
Q Consensus 72 ~~~~~v~~~l~~~~~~~~ii~S-----f~~~---~l~~l~~~~p~~~~~~l~~~~-~~~~~~~~~---~~~~~~~~~~~~ 139 (208)
.+...++...+++|.. ..+-| .+++ ....+|+..|++++....... .....+.++ ....+++.+.++
T Consensus 70 ~in~~La~~a~~~g~~-~~~Gs~~~~~~~~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ 148 (333)
T TIGR02151 70 KINRNLARAARELGIP-MGVGSQRAALKDPETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIH 148 (333)
T ss_pred HHHHHHHHHHHHcCCC-eEEcCchhhccChhhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEc
Confidence 3456677777787732 11211 1333 346677778888876544321 101112222 234556655443
Q ss_pred cc----------ccC-H---HHHHHHHhC-CCeEEEee---CCCHHHHHHHHhCCCCEEEcCC
Q 028497 140 HP----------LID-E---KLVRTFHGR-NKRVFAWT---VDDEDSMRKMLHERVDAVVTSN 184 (208)
Q Consensus 140 ~~----------~~~-~---~~v~~~~~~-g~~v~~wt---v~~~~~~~~~~~~gvd~i~TD~ 184 (208)
.+ .-+ . +.++.+++. +++|.+=. ..+.+.++.+.+.|+|+|....
T Consensus 149 ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 149 LNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred CcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 22 001 1 446666665 88887632 2678899999999999988753
No 491
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=30.88 E-value=2e+02 Score=25.31 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=37.6
Q ss_pred hHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEc
Q 028497 126 NLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVT 182 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~T 182 (208)
+++...++++++.-...+.....+.+...|+.+.+- +++.+++.++...|+|.|.-
T Consensus 271 dlAl~~gAdGVHLGQeDL~~~~aR~ilg~~~iIGvS-tHs~eEl~~A~~~gaDYI~l 326 (437)
T PRK12290 271 QLAIKHQAYGVHLGQEDLEEANLAQLTDAGIRLGLS-THGYYELLRIVQIQPSYIAL 326 (437)
T ss_pred HHHHHcCCCEEEcChHHcchhhhhhhcCCCCEEEEe-cCCHHHHHHHhhcCCCEEEE
Confidence 444557777776654444444455555566655444 57888999999999999864
No 492
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=30.82 E-value=1.5e+02 Score=23.96 Aligned_cols=37 Identities=8% Similarity=0.046 Sum_probs=21.0
Q ss_pred CCHHHHHHHHhcC-------CceEEEEeecCCCCCchhHHHHHHHHHHh
Q 028497 42 TTIEDALTLVSNS-------VRKVILDAKVGPPSYEKGLAKDILSVIER 83 (208)
Q Consensus 42 ptL~evL~~~~~~-------~~~l~lEiK~~~~~~~~~~~~~v~~~l~~ 83 (208)
.+|+|++..+++. ++.|.||.-... +.-..+++++++
T Consensus 70 i~f~~v~~~I~~~AF~~S~yPvIlsLE~Hcs~-----~qQ~~ma~~l~~ 113 (258)
T cd08629 70 ILFCDVLRAIRDYAFKASPYPVILSLENHCSL-----EQQRVMARHLRA 113 (258)
T ss_pred cCHHHHHHHHHHHhccCCCCCEEEEeeccCCH-----HHHHHHHHHHHH
Confidence 3588888887653 345666765542 333445555544
No 493
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=30.78 E-value=1.2e+02 Score=23.54 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=23.5
Q ss_pred HHHHHHHHh-CCCeEEEeeC-CCH----HHHHHHHhCCCCEEEcC
Q 028497 145 EKLVRTFHG-RNKRVFAWTV-DDE----DSMRKMLHERVDAVVTS 183 (208)
Q Consensus 145 ~~~v~~~~~-~g~~v~~wtv-~~~----~~~~~~~~~gvd~i~TD 183 (208)
..+.+.+++ .|+.+.+... ++. +.++.+.+.++|||+..
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~ 63 (272)
T cd06301 19 NAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVV 63 (272)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 444556667 7887776543 332 23455567788888753
No 494
>PLN02808 alpha-galactosidase
Probab=30.52 E-value=1.1e+02 Score=26.37 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCeEEEeeCC---------------CHHHHHHHHhCCCCEEEcCCh
Q 028497 145 EKLVRTFHGRNKRVFAWTVD---------------DEDSMRKMLHERVDAVVTSNP 185 (208)
Q Consensus 145 ~~~v~~~~~~g~~v~~wtv~---------------~~~~~~~~~~~gvd~i~TD~P 185 (208)
+.+.+++|++|++..+|+.. .+.+++.+.+.|||.|=-|..
T Consensus 100 ~~lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~DA~~fA~WGvDylK~D~C 155 (386)
T PLN02808 100 KALADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNC 155 (386)
T ss_pred HHHHHHHHHCCCceEEEecCCccccCCCCCcchHHHHHHHHHHHHhCCCEEeecCc
Confidence 67889999999999999732 134677888999999998853
No 495
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.49 E-value=3e+02 Score=22.47 Aligned_cols=82 Identities=10% Similarity=-0.107 Sum_probs=52.9
Q ss_pred HHHHHHHhhcc-CCeEEEEEEecCCCchhhhH--hhhhcCceEeecccccCHHHHHHHHh-CC--CeEEEeeCCCHHHHH
Q 028497 97 NLVRDIMRLSS-NVTAGYIIMVDPSTGFRTNL--LRIRKAGVVGVYHPLIDEKLVRTFHG-RN--KRVFAWTVDDEDSMR 170 (208)
Q Consensus 97 ~~l~~l~~~~p-~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~-~g--~~v~~wtv~~~~~~~ 170 (208)
+.+..+|+..| ..++|+-... . +++ +...|+|++... .++++.++++.+ .. +++.+=+-=+.+.+.
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~t-l-----eea~~A~~~gaDyI~lD--~~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~ 247 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETET-E-----EQVREAVAAGADIIMFD--NRTPDEIREFVKLVPSAIVTEASGGITLENLP 247 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCC-H-----HHHHHHHHcCCCEEEEC--CCCHHHHHHHHHhcCCCceEEEECCCCHHHHH
Confidence 35677777665 4566655431 1 122 234788988764 367777777654 23 344455445888999
Q ss_pred HHHhCCCCEEEcCChH
Q 028497 171 KMLHERVDAVVTSNPI 186 (208)
Q Consensus 171 ~~~~~gvd~i~TD~P~ 186 (208)
.+.+.|||+|-+-.+.
T Consensus 248 ~~a~~Gvd~IAvg~l~ 263 (277)
T PRK08072 248 AYGGTGVDYISLGFLT 263 (277)
T ss_pred HHHHcCCCEEEEChhh
Confidence 9999999999887654
No 496
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.48 E-value=1.9e+02 Score=23.23 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCeEEEeeCC-CH----HHHHHHHhC--CCCEEEcC
Q 028497 146 KLVRTFHGRNKRVFAWTVD-DE----DSMRKMLHE--RVDAVVTS 183 (208)
Q Consensus 146 ~~v~~~~~~g~~v~~wtv~-~~----~~~~~~~~~--gvd~i~TD 183 (208)
.+-+.+++.|+.+.+...+ +. +.++.++.. +||||+.-
T Consensus 21 gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~ 65 (305)
T cd06324 21 FMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFT 65 (305)
T ss_pred HHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEc
Confidence 3445567778877655432 22 235556677 88887763
No 497
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=30.46 E-value=1.2e+02 Score=25.60 Aligned_cols=55 Identities=7% Similarity=0.114 Sum_probs=34.9
Q ss_pred CHHHHHHHHhcC-----CceEEEEeecCCCCCchhHHHHHHHHHHhcCCcceE--EEeeCHHHHHHHH
Q 028497 43 TIEDALTLVSNS-----VRKVILDAKVGPPSYEKGLAKDILSVIERTKCYNCL--VWAKSDNLVRDIM 103 (208)
Q Consensus 43 tL~evL~~~~~~-----~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~~~~i--i~Sf~~~~l~~l~ 103 (208)
.|+++++.++.. +..+.+|.-.. .+.+..++.+++.|..+.. ++|++++.++.+.
T Consensus 77 ~l~~ll~~i~~~~~~~~~~e~t~e~~p~------~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~ 138 (375)
T PRK05628 77 GLARVLDAVRDTFGLAPGAEVTTEANPE------STSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLD 138 (375)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEEeCCC------CCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC
Confidence 457777776642 12456665443 2345677888888886654 5899887765553
No 498
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=30.34 E-value=1.6e+02 Score=24.86 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=35.7
Q ss_pred cCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHhCCCCEEEcCChH
Q 028497 143 IDEKLVRTFHGRNKRVFAWTVDDEDSMRKMLHERVDAVVTSNPI 186 (208)
Q Consensus 143 ~~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~~~gvd~i~TD~P~ 186 (208)
.+..-++.+|+.|-++..-|+-|....+-+-+.|+|.|.+-..-
T Consensus 22 ~ti~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSl 65 (332)
T PLN02424 22 VTLRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSA 65 (332)
T ss_pred cCHHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcH
Confidence 45556777888999999999999888888888999998876544
No 499
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=30.29 E-value=1.4e+02 Score=23.33 Aligned_cols=34 Identities=3% Similarity=-0.062 Sum_probs=27.1
Q ss_pred CHHHHHHHHhCCCeEEEeeCCCHHHHHHHH-hCCC
Q 028497 144 DEKLVRTFHGRNKRVFAWTVDDEDSMRKML-HERV 177 (208)
Q Consensus 144 ~~~~v~~~~~~g~~v~~wtv~~~~~~~~~~-~~gv 177 (208)
+.+.+++++++|+++.+-|.++..++..++ ++|.
T Consensus 20 ~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~ 54 (225)
T TIGR02461 20 AREALEELKDLGFPIVFVSSKTRAEQEYYREELGV 54 (225)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence 356788899999999999999888777665 5664
No 500
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=30.28 E-value=2.5e+02 Score=21.50 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=60.8
Q ss_pred CcCCCHHHHHHHH----hcCCceEEEEeecCCCCCchhHHHHHHHHHHhcCC--c-ceEEEeeCHHHHHHHHhhccCCeE
Q 028497 39 QVITTIEDALTLV----SNSVRKVILDAKVGPPSYEKGLAKDILSVIERTKC--Y-NCLVWAKSDNLVRDIMRLSSNVTA 111 (208)
Q Consensus 39 ~~iptL~evL~~~----~~~~~~l~lEiK~~~~~~~~~~~~~v~~~l~~~~~--~-~~ii~Sf~~~~l~~l~~~~p~~~~ 111 (208)
....+-+||.+.+ +++. .=.+-|-...+-..+.-+-.+++++-.+.+ + +=+++.||...++.+-. .+++-+
T Consensus 71 g~f~~P~eVaeRL~ei~K~~g-~d~vRiSG~EP~l~~EHvlevIeLl~~~tFvlETNG~~~g~drslv~el~n-r~nv~v 148 (228)
T COG5014 71 GDFLSPEEVAERLLEISKKRG-CDLVRISGAEPILGREHVLEVIELLVNNTFVLETNGLMFGFDRSLVDELVN-RLNVLV 148 (228)
T ss_pred ccccCHHHHHHHHHHHHHhcC-CcEEEeeCCCccccHHHHHHHHHhccCceEEEEeCCeEEecCHHHHHHHhc-CCceEE
Confidence 3456667776655 5443 223455554332223444455555544432 2 33567788888877765 354444
Q ss_pred EEEEEecCCCchhhhHhhhhcCceEeecccccCHHHHHHHHhCCCeEEEe
Q 028497 112 GYIIMVDPSTGFRTNLLRIRKAGVVGVYHPLIDEKLVRTFHGRNKRVFAW 161 (208)
Q Consensus 112 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~w 161 (208)
-+.... ..++++.+..|++ +.+....-..+++++..|+.+++-
T Consensus 149 RVsvKG----~dpesF~kIT~as---p~~F~~QL~aLr~L~~~g~rf~pA 191 (228)
T COG5014 149 RVSVKG----WDPESFEKITGAS---PEYFRYQLKALRHLHGKGHRFWPA 191 (228)
T ss_pred EEEecC----CCHHHHHHHhcCC---hHHHHHHHHHHHHHHhcCceeeeh
Confidence 322221 1235777766654 223222335578899999987653
Done!