Query 028500
Match_columns 208
No_of_seqs 248 out of 1602
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:28:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1719 Dual specificity phosp 100.0 2.9E-42 6.2E-47 251.8 15.1 170 35-206 1-171 (183)
2 smart00195 DSPc Dual specifici 100.0 1.2E-34 2.5E-39 215.8 16.8 138 61-204 1-138 (138)
3 PRK12361 hypothetical protein; 100.0 1.9E-34 4.1E-39 258.1 17.6 171 32-206 63-238 (547)
4 KOG1718 Dual specificity phosp 100.0 3.2E-33 6.8E-38 207.2 14.9 146 57-208 13-158 (198)
5 cd00127 DSPc Dual specificity 100.0 1.5E-32 3.3E-37 204.2 15.8 138 61-202 2-139 (139)
6 PF00782 DSPc: Dual specificit 100.0 2E-32 4.3E-37 202.4 10.3 133 68-204 1-133 (133)
7 KOG1717 Dual specificity phosp 100.0 6.1E-30 1.3E-34 202.3 12.3 144 59-206 170-313 (343)
8 KOG1716 Dual specificity phosp 100.0 6.1E-29 1.3E-33 205.8 16.3 146 59-207 73-218 (285)
9 PTZ00242 protein tyrosine phos 100.0 9.1E-28 2E-32 183.7 16.7 143 59-206 9-159 (166)
10 PTZ00393 protein tyrosine phos 99.9 1.3E-26 2.9E-31 183.5 16.6 134 68-207 94-231 (241)
11 PF05706 CDKN3: Cyclin-depende 99.9 6E-26 1.3E-30 170.2 4.7 156 1-178 7-168 (168)
12 KOG1720 Protein tyrosine phosp 99.9 6.8E-23 1.5E-27 157.5 14.2 119 80-203 88-206 (225)
13 PF03162 Y_phosphatase2: Tyros 99.8 3.5E-21 7.6E-26 146.9 7.7 144 58-205 4-150 (164)
14 COG2453 CDC14 Predicted protei 99.8 1.8E-18 3.9E-23 134.2 13.4 100 105-205 67-167 (180)
15 TIGR01244 conserved hypothetic 99.7 3.8E-17 8.3E-22 121.1 12.7 120 62-188 3-128 (135)
16 KOG2836 Protein tyrosine phosp 99.7 2.5E-16 5.3E-21 113.2 13.0 120 79-204 34-155 (173)
17 PF04273 DUF442: Putative phos 99.6 6.6E-16 1.4E-20 110.0 7.0 98 61-164 2-105 (110)
18 PLN02727 NAD kinase 99.6 1.5E-14 3.2E-19 132.4 10.4 103 67-172 262-369 (986)
19 smart00012 PTPc_DSPc Protein t 99.6 8.3E-14 1.8E-18 97.8 11.5 88 112-201 6-102 (105)
20 smart00404 PTPc_motif Protein 99.6 8.3E-14 1.8E-18 97.8 11.5 88 112-201 6-102 (105)
21 KOG1572 Predicted protein tyro 99.5 2.8E-13 6.1E-18 106.5 11.8 120 62-184 61-187 (249)
22 cd00047 PTPc Protein tyrosine 99.4 8.7E-13 1.9E-17 106.1 10.8 91 111-201 130-228 (231)
23 COG3453 Uncharacterized protei 99.4 2.1E-12 4.5E-17 91.2 11.1 116 62-184 4-125 (130)
24 smart00194 PTPc Protein tyrosi 99.4 9.9E-13 2.2E-17 107.5 9.6 83 119-201 167-255 (258)
25 PRK15375 pathogenicity island 99.4 5.2E-12 1.1E-16 109.7 12.0 95 111-206 423-530 (535)
26 PHA02747 protein tyrosine phos 99.3 7.4E-12 1.6E-16 105.1 9.2 93 109-203 185-296 (312)
27 PHA02740 protein tyrosine phos 99.3 9.2E-12 2E-16 103.8 9.7 92 109-202 179-284 (298)
28 PHA02742 protein tyrosine phos 99.3 9.7E-12 2.1E-16 104.0 9.0 91 110-202 185-292 (303)
29 PHA02738 hypothetical protein; 99.3 2E-11 4.3E-16 102.8 9.2 93 109-203 180-291 (320)
30 PHA02746 protein tyrosine phos 99.3 3E-11 6.5E-16 101.9 9.6 94 110-205 204-313 (323)
31 PF13350 Y_phosphatase3: Tyros 99.2 2.8E-11 6E-16 92.5 7.4 111 66-179 19-158 (164)
32 KOG2283 Clathrin coat dissocia 99.2 9.6E-11 2.1E-15 101.5 9.7 137 62-204 16-173 (434)
33 KOG0790 Protein tyrosine phosp 99.1 3.9E-10 8.5E-15 95.8 8.9 122 78-201 372-516 (600)
34 PF00102 Y_phosphatase: Protei 99.1 9E-10 2E-14 88.1 10.0 83 119-201 144-232 (235)
35 KOG0792 Protein tyrosine phosp 99.1 5.3E-10 1.2E-14 103.3 8.9 90 111-202 1031-1126(1144)
36 COG5350 Predicted protein tyro 99.0 2E-09 4.2E-14 79.4 9.4 116 78-197 24-147 (172)
37 COG5599 PTP2 Protein tyrosine 99.0 5.7E-10 1.2E-14 89.3 6.0 144 56-206 136-294 (302)
38 PF14566 PTPlike_phytase: Inos 98.9 1.4E-09 3.1E-14 81.8 5.8 64 103-168 85-148 (149)
39 COG2365 Protein tyrosine/serin 98.9 1.2E-08 2.6E-13 83.1 8.4 125 64-192 51-184 (249)
40 KOG2386 mRNA capping enzyme, g 98.8 1.6E-08 3.5E-13 86.0 6.5 139 65-204 38-184 (393)
41 KOG0791 Protein tyrosine phosp 98.7 1.7E-07 3.7E-12 78.4 9.9 95 110-206 254-354 (374)
42 KOG0789 Protein tyrosine phosp 98.4 1.5E-06 3.2E-11 75.6 9.9 61 143-203 298-364 (415)
43 PF04179 Init_tRNA_PT: Initiat 98.4 1.1E-05 2.3E-10 70.8 13.8 134 64-201 292-449 (451)
44 KOG4228 Protein tyrosine phosp 98.3 1.9E-06 4.1E-11 80.9 7.2 70 132-201 714-792 (1087)
45 KOG4228 Protein tyrosine phosp 98.3 2.1E-06 4.6E-11 80.6 7.4 96 111-207 984-1086(1087)
46 KOG0793 Protein tyrosine phosp 98.3 2.1E-06 4.5E-11 77.1 6.9 88 111-200 895-989 (1004)
47 PF14671 DSPn: Dual specificit 96.8 0.0047 1E-07 45.8 6.2 67 119-186 39-112 (141)
48 KOG4471 Phosphatidylinositol 3 94.1 0.096 2.1E-06 47.2 5.2 35 133-167 363-398 (717)
49 PLN02160 thiosulfate sulfurtra 92.5 0.2 4.4E-06 36.9 4.1 29 141-172 78-106 (136)
50 cd01518 RHOD_YceA Member of th 92.4 0.99 2.1E-05 30.9 7.3 28 142-172 59-86 (101)
51 PRK01415 hypothetical protein; 92.4 0.3 6.5E-06 39.8 5.2 28 142-172 169-196 (247)
52 COG0607 PspE Rhodanese-related 91.8 0.56 1.2E-05 32.3 5.5 67 83-168 16-83 (110)
53 KOG1089 Myotubularin-related p 91.8 0.42 9.2E-06 43.2 5.8 33 131-163 330-363 (573)
54 PF06602 Myotub-related: Myotu 91.3 0.54 1.2E-05 40.4 5.9 26 138-163 224-250 (353)
55 cd01448 TST_Repeat_1 Thiosulfa 89.0 2 4.4E-05 30.4 6.5 31 141-173 76-106 (122)
56 PRK00142 putative rhodanese-re 86.7 1.5 3.4E-05 37.0 5.3 27 143-172 170-196 (314)
57 COG1054 Predicted sulfurtransf 84.4 3.2 6.9E-05 34.6 5.9 87 64-167 105-193 (308)
58 cd01533 4RHOD_Repeat_2 Member 80.7 5.2 0.00011 27.6 5.3 27 143-172 65-91 (109)
59 PF04343 DUF488: Protein of un 80.1 9.7 0.00021 27.2 6.6 41 80-120 7-54 (122)
60 cd01523 RHOD_Lact_B Member of 78.3 2.8 6E-05 28.5 3.1 29 142-173 59-87 (100)
61 PRK05320 rhodanese superfamily 77.1 5.7 0.00012 32.5 5.1 27 143-172 174-200 (257)
62 PF00581 Rhodanese: Rhodanese- 74.8 16 0.00034 24.8 6.3 81 85-173 11-98 (113)
63 cd01520 RHOD_YbbB Member of th 74.6 9.1 0.0002 27.4 5.2 30 141-172 83-112 (128)
64 PF03861 ANTAR: ANTAR domain; 74.5 3.9 8.5E-05 25.0 2.7 25 160-184 16-40 (56)
65 TIGR03865 PQQ_CXXCW PQQ-depend 74.1 7.5 0.00016 29.4 4.8 29 142-172 114-142 (162)
66 cd01522 RHOD_1 Member of the R 73.4 7.6 0.00016 27.4 4.4 20 142-162 62-81 (117)
67 cd01528 RHOD_2 Member of the R 70.9 8.8 0.00019 26.0 4.2 28 143-173 57-84 (101)
68 PRK11784 tRNA 2-selenouridine 69.6 21 0.00045 30.6 6.9 20 143-162 87-106 (345)
69 PRK08057 cobalt-precorrin-6x r 69.0 3.3 7.1E-05 33.8 1.9 73 67-139 45-126 (248)
70 KOG1530 Rhodanese-related sulf 68.8 9.4 0.0002 28.0 4.0 73 79-161 30-105 (136)
71 PRK10886 DnaA initiator-associ 68.5 15 0.00032 28.8 5.4 38 127-167 24-61 (196)
72 PF10302 DUF2407: DUF2407 ubiq 67.6 3.1 6.6E-05 28.8 1.2 10 145-154 86-95 (97)
73 PF02571 CbiJ: Precorrin-6x re 67.1 3 6.5E-05 34.0 1.3 81 67-149 46-135 (249)
74 COG1660 Predicted P-loop-conta 67.1 12 0.00025 30.9 4.6 17 146-162 245-261 (286)
75 PF03668 ATP_bind_2: P-loop AT 67.0 12 0.00027 31.1 4.8 17 146-162 244-260 (284)
76 PRK09875 putative hydrolase; P 66.8 42 0.00092 28.0 8.1 19 78-96 39-57 (292)
77 smart00400 ZnF_CHCC zinc finge 66.5 7.9 0.00017 23.5 2.8 32 148-181 23-54 (55)
78 cd01532 4RHOD_Repeat_1 Member 65.4 11 0.00025 25.1 3.8 28 144-172 50-77 (92)
79 PF13292 DXP_synthase_N: 1-deo 63.9 10 0.00023 31.2 3.8 41 104-152 229-269 (270)
80 cd01534 4RHOD_Repeat_3 Member 63.8 9.1 0.0002 25.7 3.0 26 144-172 56-81 (95)
81 TIGR03167 tRNA_sel_U_synt tRNA 63.6 25 0.00055 29.7 6.2 19 144-162 74-92 (311)
82 COG0794 GutQ Predicted sugar p 63.0 16 0.00035 28.8 4.6 35 128-168 26-60 (202)
83 PRK05569 flavodoxin; Provision 62.7 55 0.0012 23.5 8.3 92 108-206 48-140 (141)
84 TIGR00715 precor6x_red precorr 62.5 4.5 9.8E-05 33.1 1.5 82 68-149 47-134 (256)
85 PRK05416 glmZ(sRNA)-inactivati 61.9 17 0.00037 30.3 4.8 36 128-163 222-264 (288)
86 COG0279 GmhA Phosphoheptose is 60.5 18 0.00038 27.7 4.2 32 126-160 23-54 (176)
87 COG1154 Dxs Deoxyxylulose-5-ph 60.4 14 0.0003 34.0 4.3 51 102-160 235-287 (627)
88 TIGR00204 dxs 1-deoxy-D-xylulo 60.0 15 0.00032 34.1 4.5 46 104-157 232-277 (617)
89 cd01444 GlpE_ST GlpE sulfurtra 59.3 19 0.00041 23.8 4.0 19 141-160 53-71 (96)
90 PF04364 DNA_pol3_chi: DNA pol 59.0 18 0.0004 26.5 4.1 24 130-153 15-38 (137)
91 TIGR00853 pts-lac PTS system, 58.6 8.5 0.00018 26.4 2.1 17 145-162 4-20 (95)
92 cd01525 RHOD_Kc Member of the 58.1 17 0.00036 24.6 3.6 26 144-172 65-90 (105)
93 PRK05728 DNA polymerase III su 57.6 16 0.00035 27.0 3.6 26 129-154 14-39 (142)
94 COG2927 HolC DNA polymerase II 57.0 12 0.00026 27.9 2.8 22 132-153 17-38 (144)
95 cd01526 RHOD_ThiF Member of th 56.5 14 0.0003 26.1 3.1 28 142-172 70-97 (122)
96 cd01530 Cdc25 Cdc25 phosphatas 56.2 14 0.0003 26.3 3.0 25 142-168 66-91 (121)
97 cd01447 Polysulfide_ST Polysul 56.2 11 0.00025 25.3 2.5 29 141-172 58-86 (103)
98 cd01527 RHOD_YgaP Member of th 56.0 15 0.00032 24.7 3.1 24 142-167 52-75 (99)
99 PF02673 BacA: Bacitracin resi 55.8 15 0.00033 30.1 3.5 27 152-180 159-185 (259)
100 cd01531 Acr2p Eukaryotic arsen 55.8 31 0.00067 23.8 4.8 22 143-164 61-82 (113)
101 PRK10287 thiosulfate:cyanide s 54.7 27 0.00058 24.3 4.2 19 143-162 59-77 (104)
102 PF01807 zf-CHC2: CHC2 zinc fi 53.2 16 0.00034 25.1 2.8 35 148-184 54-88 (97)
103 PRK13938 phosphoheptose isomer 53.2 43 0.00092 26.2 5.5 41 125-168 26-66 (196)
104 cd01529 4RHOD_Repeats Member o 52.9 15 0.00033 24.5 2.7 28 142-172 54-81 (96)
105 cd01443 Cdc25_Acr2p Cdc25 enzy 52.7 31 0.00066 23.9 4.3 19 144-162 66-84 (113)
106 cd05567 PTS_IIB_mannitol PTS_I 52.5 16 0.00034 24.4 2.6 18 145-162 1-18 (87)
107 PRK12554 undecaprenyl pyrophos 50.7 19 0.00041 29.9 3.3 26 153-180 166-191 (276)
108 PRK11493 sseA 3-mercaptopyruva 50.2 11 0.00024 31.1 1.9 28 142-172 229-256 (281)
109 TIGR00753 undec_PP_bacA undeca 50.2 20 0.00043 29.4 3.3 26 153-180 160-185 (255)
110 PRK06646 DNA polymerase III su 49.9 25 0.00054 26.5 3.6 26 129-154 14-39 (154)
111 PRK00281 undecaprenyl pyrophos 49.1 22 0.00047 29.4 3.4 26 153-180 164-189 (268)
112 COG0084 TatD Mg-dependent DNas 49.1 29 0.00062 28.5 4.1 56 128-183 109-170 (256)
113 cd01519 RHOD_HSP67B2 Member of 48.8 30 0.00064 23.4 3.7 27 143-172 65-91 (106)
114 TIGR02981 phageshock_pspE phag 48.8 20 0.00044 24.7 2.8 19 143-162 57-75 (101)
115 smart00450 RHOD Rhodanese Homo 48.7 34 0.00074 22.2 3.9 28 142-172 54-81 (100)
116 PRK11449 putative deoxyribonuc 48.4 37 0.00081 27.7 4.7 57 127-183 110-172 (258)
117 cd01521 RHOD_PspE2 Member of t 48.3 28 0.00061 24.0 3.5 30 141-172 61-91 (110)
118 KOG1004 Exosomal 3'-5' exoribo 47.8 46 0.001 26.5 4.8 39 143-183 184-222 (230)
119 PF13580 SIS_2: SIS domain; PD 46.8 39 0.00084 24.6 4.2 33 127-162 18-50 (138)
120 PLN02225 1-deoxy-D-xylulose-5- 44.3 37 0.00081 32.0 4.5 46 104-157 320-367 (701)
121 PRK00162 glpE thiosulfate sulf 43.7 74 0.0016 21.6 5.1 28 142-172 56-83 (108)
122 PRK15043 transcriptional regul 43.5 50 0.0011 26.9 4.6 62 144-205 162-235 (243)
123 PRK05772 translation initiatio 42.4 69 0.0015 27.7 5.6 15 141-155 164-178 (363)
124 PF14532 Sigma54_activ_2: Sigm 42.4 64 0.0014 23.2 4.8 33 128-160 5-37 (138)
125 cd01317 DHOase_IIa Dihydroorot 40.8 2E+02 0.0042 24.6 8.3 33 64-96 17-55 (374)
126 COG3564 Uncharacterized protei 40.5 42 0.0009 23.2 3.1 26 130-155 10-35 (116)
127 PRK05600 thiamine biosynthesis 40.1 26 0.00055 30.4 2.6 25 145-172 333-357 (370)
128 COG3707 AmiR Response regulato 40.0 34 0.00073 26.8 3.0 22 163-184 151-172 (194)
129 PRK09590 celB cellobiose phosp 39.8 27 0.00059 24.4 2.3 12 145-156 2-13 (104)
130 PF06838 Met_gamma_lyase: Meth 39.7 98 0.0021 27.0 5.9 70 105-189 123-192 (403)
131 TIGR03573 WbuX N-acetyl sugar 39.4 62 0.0014 27.6 4.9 32 151-183 283-314 (343)
132 PLN02582 1-deoxy-D-xylulose-5- 38.5 57 0.0012 30.7 4.8 51 104-160 276-328 (677)
133 PF03102 NeuB: NeuB family; I 38.3 39 0.00084 27.4 3.3 29 126-155 124-152 (241)
134 PRK13936 phosphoheptose isomer 38.2 1E+02 0.0022 23.9 5.6 34 128-164 27-60 (197)
135 PRK02947 hypothetical protein; 37.3 69 0.0015 25.9 4.6 34 127-163 23-56 (246)
136 PRK06036 translation initiatio 36.2 84 0.0018 26.9 5.1 18 141-158 145-162 (339)
137 PRK07411 hypothetical protein; 35.9 45 0.00097 29.0 3.5 28 143-173 341-368 (390)
138 PLN02723 3-mercaptopyruvate su 35.7 44 0.00094 28.2 3.3 18 141-159 266-283 (320)
139 COG0588 GpmA Phosphoglycerate 35.3 1.9E+02 0.0041 23.2 6.5 96 77-179 97-203 (230)
140 PF01964 ThiC: ThiC family; I 35.1 1.3E+02 0.0027 26.6 6.0 137 62-200 60-240 (420)
141 PF11848 DUF3368: Domain of un 35.0 97 0.0021 18.1 4.1 41 158-200 3-45 (48)
142 PF02302 PTS_IIB: PTS system, 34.9 26 0.00056 23.1 1.5 16 146-161 1-16 (90)
143 TIGR03642 cas_csx13 CRISPR-ass 34.6 1.5E+02 0.0032 21.5 5.4 55 114-171 57-116 (124)
144 PF09707 Cas_Cas2CT1978: CRISP 34.2 22 0.00047 24.1 1.0 19 58-76 18-36 (86)
145 COG2099 CobK Precorrin-6x redu 34.1 26 0.00056 28.7 1.6 72 68-139 47-126 (257)
146 TIGR01460 HAD-SF-IIA Haloacid 34.0 2.3E+02 0.005 22.4 7.2 70 130-200 16-98 (236)
147 COG0205 PfkA 6-phosphofructoki 33.6 2.2E+02 0.0048 24.5 7.3 87 80-166 88-184 (347)
148 KOG1016 Predicted DNA helicase 33.6 45 0.00098 32.1 3.2 54 126-189 415-468 (1387)
149 PRK00414 gmhA phosphoheptose i 33.3 82 0.0018 24.4 4.3 34 126-162 26-59 (192)
150 cd03174 DRE_TIM_metallolyase D 33.2 2.5E+02 0.0054 22.3 12.1 120 79-201 121-262 (265)
151 PRK09629 bifunctional thiosulf 33.0 80 0.0017 29.3 4.8 20 141-161 220-239 (610)
152 cd01720 Sm_D2 The eukaryotic S 33.0 57 0.0012 22.0 2.9 27 135-161 5-31 (87)
153 PF01904 DUF72: Protein of unk 32.9 2.5E+02 0.0055 22.3 10.4 75 79-153 135-213 (230)
154 cd01449 TST_Repeat_2 Thiosulfa 32.8 67 0.0015 22.1 3.5 27 143-172 77-103 (118)
155 PRK12315 1-deoxy-D-xylulose-5- 32.8 75 0.0016 29.3 4.6 45 105-157 202-246 (581)
156 TIGR00274 N-acetylmuramic acid 32.3 1.5E+02 0.0032 24.8 5.9 46 127-175 40-88 (291)
157 COG1968 BacA Undecaprenyl pyro 31.4 60 0.0013 26.9 3.3 25 153-179 165-189 (270)
158 TIGR00512 salvage_mtnA S-methy 31.3 1.2E+02 0.0027 25.8 5.3 14 141-154 140-157 (331)
159 PRK01269 tRNA s(4)U8 sulfurtra 31.2 72 0.0016 28.6 4.1 28 142-172 447-474 (482)
160 cd04445 DEP_PLEK1 DEP (Disheve 31.0 86 0.0019 21.7 3.5 33 145-182 25-58 (99)
161 PHA02540 61 DNA primase; Provi 30.8 1E+02 0.0023 26.4 4.8 37 146-185 53-90 (337)
162 PF13378 MR_MLE_C: Enolase C-t 30.5 55 0.0012 22.5 2.7 23 130-152 32-54 (111)
163 KOG1529 Mercaptopyruvate sulfu 30.1 54 0.0012 27.3 2.9 30 138-167 230-259 (286)
164 PF04309 G3P_antiterm: Glycero 29.9 1.8E+02 0.0039 22.4 5.6 32 137-169 37-70 (175)
165 PRK13352 thiamine biosynthesis 29.6 3.3E+02 0.0072 24.1 7.6 69 132-200 144-244 (431)
166 smart00488 DEXDc2 DEAD-like he 29.3 1.3E+02 0.0028 25.0 5.1 35 132-166 15-49 (289)
167 smart00489 DEXDc3 DEAD-like he 29.3 1.3E+02 0.0028 25.0 5.1 35 132-166 15-49 (289)
168 cd05565 PTS_IIB_lactose PTS_II 29.0 50 0.0011 22.9 2.2 19 146-166 2-20 (99)
169 PF02126 PTE: Phosphotriestera 29.0 1.5E+02 0.0032 25.0 5.4 33 141-175 152-184 (308)
170 cd05007 SIS_Etherase N-acetylm 28.9 78 0.0017 25.8 3.6 43 127-172 32-77 (257)
171 TIGR00640 acid_CoA_mut_C methy 28.7 56 0.0012 23.8 2.5 30 66-95 85-114 (132)
172 cd01524 RHOD_Pyr_redox Member 28.6 71 0.0015 20.9 2.9 19 141-160 48-66 (90)
173 PF06415 iPGM_N: BPG-independe 28.4 67 0.0015 25.8 3.1 35 132-166 47-83 (223)
174 PRK12571 1-deoxy-D-xylulose-5- 28.2 91 0.002 29.2 4.4 48 103-157 239-286 (641)
175 PRK12570 N-acetylmuramic acid- 27.9 1.1E+02 0.0023 25.7 4.4 46 127-173 41-87 (296)
176 PF00580 UvrD-helicase: UvrD/R 27.9 64 0.0014 26.2 3.1 32 144-175 13-46 (315)
177 COG1440 CelA Phosphotransferas 27.9 52 0.0011 23.0 2.0 16 145-160 2-17 (102)
178 PLN02790 transketolase 27.8 96 0.0021 29.1 4.4 47 105-158 195-242 (654)
179 COG4738 Predicted transcriptio 27.1 92 0.002 22.3 3.2 19 153-171 23-41 (124)
180 COG2089 SpsE Sialic acid synth 27.0 1.5E+02 0.0033 25.3 5.0 28 126-156 158-187 (347)
181 PRK10310 PTS system galactitol 26.0 56 0.0012 22.2 2.0 19 145-163 3-21 (94)
182 cd01535 4RHOD_Repeat_4 Member 25.8 2E+02 0.0043 21.1 5.1 25 142-168 47-71 (145)
183 cd02071 MM_CoA_mut_B12_BD meth 25.5 60 0.0013 23.0 2.2 31 66-96 82-112 (122)
184 PF00762 Ferrochelatase: Ferro 25.5 2.4E+02 0.0053 23.8 6.1 43 79-121 247-300 (316)
185 PF09623 Cas_NE0113: CRISPR-as 25.3 2E+02 0.0044 23.1 5.3 40 132-171 99-138 (224)
186 PRK08334 translation initiatio 25.3 1.9E+02 0.0041 25.0 5.4 12 143-155 160-171 (356)
187 PRK10499 PTS system N,N'-diace 25.2 1.4E+02 0.003 20.8 3.9 17 145-161 4-20 (106)
188 PF13147 Amidohydro_4: Amidohy 25.1 3.4E+02 0.0073 21.2 6.9 53 130-182 222-279 (304)
189 PLN02449 ferrochelatase 24.9 2.9E+02 0.0063 25.0 6.7 84 62-150 328-422 (485)
190 TIGR01245 trpD anthranilate ph 24.7 2.5E+02 0.0053 23.9 6.1 54 142-198 97-155 (330)
191 PF12554 MOZART1: Mitotic-spin 24.7 1.6E+02 0.0035 17.5 4.4 32 153-185 17-48 (48)
192 TIGR00190 thiC thiamine biosyn 24.6 4.7E+02 0.01 23.1 7.7 70 132-201 141-242 (423)
193 PRK05720 mtnA methylthioribose 24.5 2E+02 0.0042 24.8 5.4 18 141-158 144-161 (344)
194 PF13189 Cytidylate_kin2: Cyti 24.1 3E+02 0.0066 20.7 6.0 49 129-183 81-148 (179)
195 TIGR01391 dnaG DNA primase, ca 23.9 92 0.002 27.4 3.4 36 148-185 55-90 (415)
196 PF05763 DUF835: Protein of un 23.4 3E+02 0.0065 20.1 6.8 64 110-186 40-105 (136)
197 TIGR03569 NeuB_NnaB N-acetylne 23.4 2E+02 0.0044 24.5 5.3 30 126-155 144-174 (329)
198 COG2897 SseA Rhodanese-related 23.2 1.5E+02 0.0032 24.8 4.3 20 141-160 231-250 (285)
199 PF00931 NB-ARC: NB-ARC domain 22.9 1.3E+02 0.0028 24.2 4.0 37 129-165 4-40 (287)
200 TIGR02571 ComEB ComE operon pr 22.9 74 0.0016 23.8 2.3 53 66-118 88-140 (151)
201 COG3268 Uncharacterized conser 22.8 2.1E+02 0.0045 24.8 5.1 60 85-151 70-131 (382)
202 TIGR01873 cas_CT1978 CRISPR-as 22.8 45 0.00097 22.6 1.0 19 58-76 18-36 (87)
203 TIGR02482 PFKA_ATP 6-phosphofr 22.7 4.6E+02 0.01 22.0 8.5 105 80-184 85-207 (301)
204 PRK15129 L-Ala-D/L-Glu epimera 22.7 88 0.0019 26.3 3.0 26 132-157 256-281 (321)
205 PF13344 Hydrolase_6: Haloacid 22.7 2.6E+02 0.0055 19.0 7.4 69 130-200 16-97 (101)
206 PF15387 DUF4611: Domain of un 22.7 33 0.00071 23.5 0.3 8 23-30 86-93 (96)
207 PRK13107 preprotein translocas 22.4 1.4E+02 0.0031 29.2 4.5 50 104-153 400-458 (908)
208 COG0369 CysJ Sulfite reductase 22.3 4.1E+02 0.0089 24.7 7.3 58 128-185 518-577 (587)
209 TIGR02094 more_P_ylases alpha- 22.2 1E+02 0.0023 28.6 3.5 36 145-183 161-199 (601)
210 TIGR02764 spore_ybaN_pdaB poly 22.2 2.2E+02 0.0048 21.5 5.0 46 105-154 115-162 (191)
211 TIGR01550 DOC_P1 death-on-curi 21.9 2E+02 0.0044 20.4 4.4 50 129-184 50-104 (121)
212 cd00009 AAA The AAA+ (ATPases 21.9 2.5E+02 0.0054 19.1 4.9 21 144-164 19-39 (151)
213 PF02629 CoA_binding: CoA bind 21.9 2.6E+02 0.0055 18.7 4.9 17 79-95 79-95 (96)
214 COG1228 HutI Imidazolonepropio 21.7 3.1E+02 0.0067 24.1 6.2 47 135-182 297-346 (406)
215 cd00158 RHOD Rhodanese Homolog 21.6 1.5E+02 0.0033 18.6 3.5 24 142-167 48-71 (89)
216 PF15195 TMEM210: TMEM210 fami 21.5 1.2E+02 0.0025 20.9 2.8 31 148-178 2-32 (116)
217 PRK10302 hypothetical protein; 21.4 4.7E+02 0.01 21.6 9.7 73 80-154 148-238 (272)
218 cd07995 TPK Thiamine pyrophosp 21.3 2.9E+02 0.0062 21.5 5.5 45 105-158 59-104 (208)
219 COG0182 Predicted translation 21.3 66 0.0014 27.4 1.9 15 141-155 147-161 (346)
220 cd06199 SiR Cytochrome p450- l 21.2 5.2E+02 0.011 22.0 7.5 51 135-185 298-350 (360)
221 cd05006 SIS_GmhA Phosphoheptos 21.2 2.3E+02 0.0049 21.3 4.8 34 126-162 15-48 (177)
222 cd00133 PTS_IIB PTS_IIB: subun 21.1 71 0.0015 20.0 1.7 19 146-164 1-19 (84)
223 cd05564 PTS_IIB_chitobiose_lic 21.0 77 0.0017 21.5 1.9 13 146-158 1-13 (96)
224 TIGR00963 secA preprotein tran 21.0 1.7E+02 0.0037 28.0 4.6 50 104-153 356-414 (745)
225 PRK05441 murQ N-acetylmuramic 21.0 1.4E+02 0.0031 24.9 3.8 44 127-173 45-91 (299)
226 PRK08762 molybdopterin biosynt 20.9 2.2E+02 0.0047 24.5 5.1 18 142-160 55-72 (376)
227 cd01295 AdeC Adenine deaminase 20.6 3.7E+02 0.0079 23.5 6.5 45 135-182 125-174 (422)
228 cd02008 TPP_IOR_alpha Thiamine 20.6 2.1E+02 0.0046 21.5 4.5 23 130-152 153-175 (178)
229 PRK11558 putative ssRNA endonu 20.6 53 0.0011 22.7 1.0 19 58-76 20-38 (97)
230 PRK13104 secA preprotein trans 20.6 1.5E+02 0.0033 29.0 4.3 50 104-153 395-453 (896)
231 TIGR03217 4OH_2_O_val_ald 4-hy 20.5 5.4E+02 0.012 21.9 8.6 80 78-160 119-204 (333)
232 PTZ00458 acyl CoA binding prot 20.4 2.4E+02 0.0051 19.1 4.2 33 174-206 5-37 (90)
233 PRK10812 putative DNAse; Provi 20.4 1.8E+02 0.0039 23.7 4.3 28 129-156 109-136 (265)
234 PRK10318 hypothetical protein; 20.4 1.3E+02 0.0028 21.7 3.0 28 132-159 72-103 (121)
235 cd00308 enolase_like Enolase-s 20.3 2.6E+02 0.0055 22.0 5.1 27 130-156 182-208 (229)
236 PHA03338 US22 family homolog; 20.2 1.1E+02 0.0023 25.8 2.8 37 149-185 161-198 (344)
No 1
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=2.9e-42 Score=251.79 Aligned_cols=170 Identities=58% Similarity=1.025 Sum_probs=161.8
Q ss_pred hccceeecchhhHHHHHHhhhccCCCcccccCceEEcCCCCC-CChhHHHhCCCcEEEEecCCCccCCCccchhcCCcEE
Q 028500 35 AGARILFYPTLLYNVFRNKIQAEFRWWDEVDQFLLLGAVPFP-KDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDH 113 (208)
Q Consensus 35 ~~~~~~~~P~~~~~~~~~~~~~~~~~~~~I~~~l~lG~~~~~-~~~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~ 113 (208)
+++|++|||||+||++|.+ ...++|| ++++++.+|..|.. .+.+.++++|+..||.|++++|...+...|+..|+++
T Consensus 1 ~~ar~~fyptllynvv~~k-~s~~~wy-~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~ 78 (183)
T KOG1719|consen 1 MGARVLFYPTLLYNVVREK-ASAFRWY-RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEF 78 (183)
T ss_pred CCceeeecHHHHHHHHHHH-Hhhhcee-eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhcccee
Confidence 4799999999999999999 6789999 99999999999987 6778889999999999999999988888999999999
Q ss_pred EEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHH
Q 028500 114 LVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPS 193 (208)
Q Consensus 114 ~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~ 193 (208)
+.+|+.|....|+.+.+.++++||++....|+.|||||++|++||+|+++||||+..+|++++|++++|++||.+.+.++
T Consensus 79 L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~ 158 (183)
T KOG1719|consen 79 LVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPA 158 (183)
T ss_pred EEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHH
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 028500 194 QWKLISPSQSRSI 206 (208)
Q Consensus 194 ~~~~L~~~~~~l~ 206 (208)
|++.|.+|.+.+.
T Consensus 159 Qw~~l~ef~~~~~ 171 (183)
T KOG1719|consen 159 QWDVLKEFYKQIV 171 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=100.00 E-value=1.2e-34 Score=215.78 Aligned_cols=138 Identities=25% Similarity=0.404 Sum_probs=127.4
Q ss_pred cccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHH
Q 028500 61 WDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSN 140 (208)
Q Consensus 61 ~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~ 140 (208)
+++|.|+||+|++|.+.+.+.|+++||++||||+.+.+. ....+++|+++|+.|....+..+.+.++++||+..
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~ 74 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPN------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDA 74 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999986542 12578999999999965577888999999999999
Q ss_pred hhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHHh
Q 028500 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQSR 204 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~ 204 (208)
..+|++|||||.+|+||||++++||||...|+++++|++++|++||.+.||++|+++|..|+++
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999974
No 3
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-34 Score=258.12 Aligned_cols=171 Identities=26% Similarity=0.423 Sum_probs=149.5
Q ss_pred Hhhhccceeecchh----hHHHHHHhhhccCCCcccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccCCCccchh
Q 028500 32 LVGAGARILFYPTL----LYNVFRNKIQAEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYH 107 (208)
Q Consensus 32 ~~~~~~~~~~~P~~----~~~~~~~~~~~~~~~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~ 107 (208)
.+++++||+|+||+ ++++|+++. ++.+|+++|+|+||+|+.+.+.|.+.|+++||++||||+.+.+.. .....
T Consensus 63 ~~~~~~~~l~~P~l~~~~~~~~~~r~~-~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~--~~~~~ 139 (547)
T PRK12361 63 TIPWYIRWVFIPFLLGTRLYNAWARKR-DSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGL--DWSLT 139 (547)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcc-cCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccc--ccccc
Confidence 45779999999999 455445444 577999999999999999999999999999999999999765421 11222
Q ss_pred cCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHh-CCCCHHHHHHHHHHhCC
Q 028500 108 AHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEY-KHMAPAAALEYVRCRRP 186 (208)
Q Consensus 108 ~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~-~~~s~~~A~~~vr~~Rp 186 (208)
..+++|+++|+.|.. .|..++++++++||++.+++|++|||||++|+|||+++++||||.. .++|+++|++++|++||
T Consensus 140 ~~~i~yl~iPi~D~~-~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp 218 (547)
T PRK12361 140 EEDIDYLNIPILDHS-VPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRK 218 (547)
T ss_pred ccCceEEEeecCCCC-CCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCC
Confidence 468999999999975 7788999999999999999999999999999999999999999976 58999999999999999
Q ss_pred CCccCHHHHHHHHHHHHhhc
Q 028500 187 RVLLAPSQWKLISPSQSRSI 206 (208)
Q Consensus 187 ~~~~~~~~~~~L~~~~~~l~ 206 (208)
.+.+|+.|+++|++|.+...
T Consensus 219 ~v~~n~~q~~~l~~~~~~~~ 238 (547)
T PRK12361 219 TARLNKRQLRALEKMLEQGK 238 (547)
T ss_pred CCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999987653
No 4
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=3.2e-33 Score=207.17 Aligned_cols=146 Identities=23% Similarity=0.331 Sum_probs=134.9
Q ss_pred cCCCcccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHH
Q 028500 57 EFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDF 136 (208)
Q Consensus 57 ~~~~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~ 136 (208)
...-+++|+++||+++-..+.+...|++.||+.|||.+.|.. +.. -.+++|..+|+.|.+..++.++|+.+.+.
T Consensus 13 ~~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~p----n~~--l~~~qy~kv~~~D~p~~~l~~hfD~vAD~ 86 (198)
T KOG1718|consen 13 SIGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVP----NTS--LPDIQYMKVPLEDTPQARLYDHFDPVADK 86 (198)
T ss_pred CccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCC----Ccc--CCCceeEEEEcccCCcchhhhhhhHHHHH
Confidence 566679999999999888888999999999999999998643 222 36889999999999989999999999999
Q ss_pred HHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHHhhccC
Q 028500 137 IHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQSRSISS 208 (208)
Q Consensus 137 i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~l~~s 208 (208)
|+.....||++||||.+|+|||+++|+||||++.+|++.+|+.++|++||.+.||.+||+||..||++|.++
T Consensus 87 I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 87 IHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred HHHHHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999763
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=100.00 E-value=1.5e-32 Score=204.22 Aligned_cols=138 Identities=27% Similarity=0.384 Sum_probs=127.1
Q ss_pred cccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHH
Q 028500 61 WDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSN 140 (208)
Q Consensus 61 ~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~ 140 (208)
.++|.|+||+|+++.+.+.+.|++.||++||||+.+.+. ..+...|++|+++|+.|....+....+..++++|...
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC----cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999987652 3345689999999999987566777899999999999
Q ss_pred hhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Q 028500 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQ 202 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~ 202 (208)
.++|++|||||.+|.|||++++++|+|..+++++++|++++|++||.+.++++|+.+|.+|+
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999985
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.98 E-value=2e-32 Score=202.36 Aligned_cols=133 Identities=35% Similarity=0.555 Sum_probs=123.1
Q ss_pred eEEcCCCCCCChhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcE
Q 028500 68 LLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTT 147 (208)
Q Consensus 68 l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~V 147 (208)
||+|+.+.+. ...|+++||++|||++.+.+.. ......+++|+++|+.|....+..+.+.++++||+++..+|++|
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~V 76 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKV 76 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhccccee
Confidence 7999999999 9999999999999999875421 44567899999999999666888899999999999999999999
Q ss_pred EEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHHh
Q 028500 148 YVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQSR 204 (208)
Q Consensus 148 lVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~ 204 (208)
||||.+|+|||+++++||||...+|++++|+++++++||.+.|+++|+++|.+|+++
T Consensus 77 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 77 LVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999985
No 7
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=6.1e-30 Score=202.26 Aligned_cols=144 Identities=19% Similarity=0.221 Sum_probs=132.3
Q ss_pred CCcccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHH
Q 028500 59 RWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIH 138 (208)
Q Consensus 59 ~~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~ 138 (208)
.++-+|.|+||+|+...+.+.+.|+++||++|||++... |..+-+...+.|..||+.|+-..+....|.+|+.||+
T Consensus 170 ~FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl----pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfId 245 (343)
T KOG1717|consen 170 SFPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL----PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFID 245 (343)
T ss_pred CcchhhccchhcccccccccHHHHHhcCceEEEecCCCC----cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHH
Confidence 345689999999999999999999999999999999743 3334445678999999999987888899999999999
Q ss_pred HHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHHhhc
Q 028500 139 SNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQSRSI 206 (208)
Q Consensus 139 ~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~l~ 206 (208)
+++.++..|||||-+|++||+||++||||+...+++.+|+.+|+.++.++.||-+|+-||..|++.+-
T Consensus 246 eArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlg 313 (343)
T KOG1717|consen 246 EARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLG 313 (343)
T ss_pred HhhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999873
No 8
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=6.1e-29 Score=205.76 Aligned_cols=146 Identities=27% Similarity=0.376 Sum_probs=132.7
Q ss_pred CCcccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHH
Q 028500 59 RWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIH 138 (208)
Q Consensus 59 ~~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~ 138 (208)
.....|.|++|+|+...+.+...|++.||++|+|+........ .....+++|+++|+.|.+..++..+|+++++||+
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~---~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~ 149 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPR---FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIE 149 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccc---cccccCceEEeccccCCccccHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999998643211 1223389999999999988889999999999999
Q ss_pred HHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHHhhcc
Q 028500 139 SNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQSRSIS 207 (208)
Q Consensus 139 ~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~l~~ 207 (208)
.+..+|++|||||.+|+|||+|+++||||++.+|++++|+++|+.+||.+.||.+|+.||.+|++.+..
T Consensus 150 ~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~ 218 (285)
T KOG1716|consen 150 KAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSK 218 (285)
T ss_pred HHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999998754
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.96 E-value=9.1e-28 Score=183.68 Aligned_cols=143 Identities=25% Similarity=0.357 Sum_probs=124.0
Q ss_pred CCcccccCceEEcCCCCCCCh----hHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHH
Q 028500 59 RWWDEVDQFLLLGAVPFPKDV----PRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAV 134 (208)
Q Consensus 59 ~~~~~I~~~l~lG~~~~~~~~----~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~ 134 (208)
+-.+.+..+++.-..|..... +.|+++||++||+++++. .+.+.++..|++|+++|+.|.. +|..+.+.+++
T Consensus 9 ~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~---~~~~~~~~~gi~~~~~p~~D~~-~P~~~~i~~~~ 84 (166)
T PTZ00242 9 RQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT---YDAELLEKNGIEVHDWPFDDGA-PPPKAVIDNWL 84 (166)
T ss_pred cceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC---CCHHHHHHCCCEEEecCCCCCC-CCCHHHHHHHH
Confidence 334558888888888888544 888999999999998753 2445677889999999998875 78888899999
Q ss_pred HHHHHHhhC----CCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHHhhc
Q 028500 135 DFIHSNSCA----GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQSRSI 206 (208)
Q Consensus 135 ~~i~~~~~~----~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~l~ 206 (208)
+++++.+.. |++|+|||.+|+||||+++++|||..+++++++|++++|++||++. ++.|+.+|.+|.+++.
T Consensus 85 ~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~ 159 (166)
T PTZ00242 85 RLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKK 159 (166)
T ss_pred HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhc
Confidence 999887754 8999999999999999999999999989999999999999999986 8999999999998764
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.95 E-value=1.3e-26 Score=183.50 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=117.9
Q ss_pred eEEcCCCCCCC----hhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC
Q 028500 68 LLLGAVPFPKD----VPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA 143 (208)
Q Consensus 68 l~lG~~~~~~~----~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~ 143 (208)
+.+-..|.... ++.|++.||++||+++++. ++.+.++..||+|+++|+.|.. +|..+.++++++++++.+..
T Consensus 94 fLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~---Yd~~~~~~~GI~~~~lpipDg~-aPs~~~i~~~l~~i~~~l~~ 169 (241)
T PTZ00393 94 ILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERT---YNDGEITSAGINVHELIFPDGD-APTVDIVSNWLTIVNNVIKN 169 (241)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---CCHHHHHHcCCeEEEeecCCCC-CCCHHHHHHHHHHHHHHHhc
Confidence 55556666544 4889999999999998753 3566778899999999999975 88889999999999999989
Q ss_pred CCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHHhhcc
Q 028500 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQSRSIS 207 (208)
Q Consensus 144 ~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~l~~ 207 (208)
|++|+|||++|.||||+++++|||. .||++++|+++||++||++. +..|+++|++|+++..+
T Consensus 170 g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~~~k 231 (241)
T PTZ00393 170 NRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKKKKK 231 (241)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccc
Confidence 9999999999999999999999997 79999999999999999985 89999999999988643
No 11
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.92 E-value=6e-26 Score=170.21 Aligned_cols=156 Identities=26% Similarity=0.400 Sum_probs=91.3
Q ss_pred CceecccccccccccccccccceeeccHHHHHhhhccceeecchhhHHHHHHhhhccCCCcccccCceEEcCCCCCCChh
Q 028500 1 MKIEELDDVEHDRNDDGCRTTQIVKADAKRALVGAGARILFYPTLLYNVFRNKIQAEFRWWDEVDQFLLLGAVPFPKDVP 80 (208)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~I~~~l~lG~~~~~~~~~ 80 (208)
|++.|+|++|||+.+++.++.++.+++......+.+..+.++|..-+.-++| ....|++
T Consensus 7 ~~~~~~~ss~~~~~~~~~~P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~R---------------------dL~~DL~ 65 (168)
T PF05706_consen 7 MRTSEFDSSDEEVVEEEQTPIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRR---------------------DLQADLE 65 (168)
T ss_dssp ----------------BTS----EEEE-GGGT-SSEEEEES-TT-EETTEEB----------------------HHHHHH
T ss_pred cccccCCCCccCcccccCCceeeeeecccccCCcceeeeecCCCcccccccc---------------------hHHHHHH
Confidence 8899999999999998999999999998777777788888888652221111 1236778
Q ss_pred HHHhCCCcEEEEecCCCcc---CCC--ccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCC
Q 028500 81 RLKQLGVGGVITLNEPYET---LVP--SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGR 155 (208)
Q Consensus 81 ~L~~~gI~~Vi~l~~~~~~---~~~--~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 155 (208)
.|+..|++.||.+.+..|. ..+ .+.++..|+.|+|+|+.|.. .|..+.+.++++.|...+++|++|+|||+.|.
T Consensus 66 ~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~-aPd~~~~~~i~~eL~~~L~~g~~V~vHC~GGl 144 (168)
T PF05706_consen 66 RLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS-APDFAAAWQILEELAARLENGRKVLVHCRGGL 144 (168)
T ss_dssp HHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS----HHHHHHHHHHHHHHHHTT--EEEE-SSSS
T ss_pred HHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 9999999999999987654 122 45778899999999999987 67777777888899999999999999999999
Q ss_pred CchHHHHHHHHHHhC-CCCHHHHH
Q 028500 156 GRSTTIVLCYLVEYK-HMAPAAAL 178 (208)
Q Consensus 156 ~RS~~v~~ayL~~~~-~~s~~~A~ 178 (208)
||||+|++|+|+... .+++++|+
T Consensus 145 GRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 145 GRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp SHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CHHHHHHHHHHHHHcCCCChhhcC
Confidence 999999999998754 47999886
No 12
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.90 E-value=6.8e-23 Score=157.52 Aligned_cols=119 Identities=29% Similarity=0.478 Sum_probs=109.4
Q ss_pred hHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchH
Q 028500 80 PRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRST 159 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~ 159 (208)
..++.+++++++.|+.. .++.+.+...||.++++|+.|.. .|..+.+.++++.++.+.+ |++|.|||++|.||||
T Consensus 88 ~~~~~~~v~s~vrln~~---~yd~~~f~~~Gi~h~~l~f~Dg~-tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG 162 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKR---LYDAKRFTDAGIDHHDLFFADGS-TPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTG 162 (225)
T ss_pred HHhhhcccceEEEcCCC---CCChHHhcccCceeeeeecCCCC-CCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchh
Confidence 45678899999999875 34677788999999999999986 8889999999999999998 9999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHH
Q 028500 160 TIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQS 203 (208)
Q Consensus 160 ~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~ 203 (208)
++++||||+..|+|+.+|+..+|..||+++.++.|...+.++..
T Consensus 163 ~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 163 TLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876
No 13
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.84 E-value=3.5e-21 Score=146.87 Aligned_cols=144 Identities=17% Similarity=0.195 Sum_probs=91.7
Q ss_pred CCCcccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCC---CCcHHHHHHHH
Q 028500 58 FRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLF---APSFVDIRRAV 134 (208)
Q Consensus 58 ~~~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~---~~~~~~~~~~~ 134 (208)
+..|..|.++||.|++|.+.++.+|+++|+++||+|+.+........+++..|++++++++..... ....+.+.+++
T Consensus 4 P~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL 83 (164)
T PF03162_consen 4 PLNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEAL 83 (164)
T ss_dssp -TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHH
T ss_pred CccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHH
Confidence 345678999999999999999999999999999999986432222346688999999999976532 23456778888
Q ss_pred HHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHHhh
Q 028500 135 DFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQSRS 205 (208)
Q Consensus 135 ~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~l 205 (208)
+.|.+.. +.||||||..|.+|||+|++||. +.+||+...|++..+.--.. ..+..-.++++.|...+
T Consensus 84 ~~ild~~--n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~~~~ 150 (164)
T PF03162_consen 84 EIILDPR--NYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFDVEL 150 (164)
T ss_dssp HHHH-GG--G-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT-----
T ss_pred HHHhCCC--CCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcCcce
Confidence 8776654 38999999999999999999999 67999999999888864322 34566667777766544
No 14
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.79 E-value=1.8e-18 Score=134.23 Aligned_cols=100 Identities=30% Similarity=0.464 Sum_probs=85.8
Q ss_pred chhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 028500 105 LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKH-MAPAAALEYVRC 183 (208)
Q Consensus 105 ~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~-~s~~~A~~~vr~ 183 (208)
.....++.++++|+.|.. .|....+++++++|+...++|++|+|||++|+|||||+++||||.+++ +..++|+..++.
T Consensus 67 ~~~~~~~~~~~~~~~D~~-~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~ 145 (180)
T COG2453 67 IEENDGIQVLHLPILDGT-VPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRR 145 (180)
T ss_pred eeccCCceeeeeeecCCC-CCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 345678999999999986 777899999999999999999999999999999999999999999954 578888888888
Q ss_pred hCCCCccCHHHHHHHHHHHHhh
Q 028500 184 RRPRVLLAPSQWKLISPSQSRS 205 (208)
Q Consensus 184 ~Rp~~~~~~~~~~~L~~~~~~l 205 (208)
+||.......|..+..+.....
T Consensus 146 ~r~~~v~~~~q~~~~~e~~~~~ 167 (180)
T COG2453 146 RRPGAVVTEIQHLFELEQELFR 167 (180)
T ss_pred cCCcccccHHHHHHHHHHHHHH
Confidence 8886667888877777665543
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.74 E-value=3.8e-17 Score=121.06 Aligned_cols=120 Identities=16% Similarity=0.125 Sum_probs=94.3
Q ss_pred ccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccC-CCcc-----chhcCCcEEEEEeCCCCCCCCcHHHHHHHHH
Q 028500 62 DEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETL-VPSS-----LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVD 135 (208)
Q Consensus 62 ~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~-~~~~-----~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~ 135 (208)
.+|++.+|+++++...+++.|+++||++|||+..+.|.. .|.. .....|++|+++|+... ....+.+..+.+
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG--DITPDDVETFRA 80 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 479999999999999999999999999999999765542 2221 22457999999999764 334555666666
Q ss_pred HHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCC
Q 028500 136 FIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRV 188 (208)
Q Consensus 136 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~ 188 (208)
+++. ..+|||+||++|. ||+++.+.++.. .|++.+++++..+..-..+
T Consensus 81 ~~~~---~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~ 128 (135)
T TIGR01244 81 AIGA---AEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDL 128 (135)
T ss_pred HHHh---CCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCc
Confidence 6653 3589999999999 999988777664 7899999999998865543
No 16
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.72 E-value=2.5e-16 Score=113.25 Aligned_cols=120 Identities=25% Similarity=0.359 Sum_probs=98.8
Q ss_pred hhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC--CCcEEEEcCCCCC
Q 028500 79 VPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA--GKTTYVHCKAGRG 156 (208)
Q Consensus 79 ~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~--~~~VlVHC~~G~~ 156 (208)
++.|+++|+++||-++++- ++....+..||..+.||..|.. +|....++...+.+....++ |..|.|||.+|.|
T Consensus 34 ieELkKygvttvVRVCe~T---Ydt~~lek~GI~Vldw~f~dg~-ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglg 109 (173)
T KOG2836|consen 34 IEELKKYGVTTVVRVCEPT---YDTTPLEKEGITVLDWPFDDGA-PPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLG 109 (173)
T ss_pred HHHHHhcCCeEEEEecccc---cCCchhhhcCceEeecccccCC-CCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccC
Confidence 4689999999999999863 4555677899999999999975 55555666666655444333 6789999999999
Q ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHHh
Q 028500 157 RSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQSR 204 (208)
Q Consensus 157 RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~ 204 (208)
|++.+++.-|+. .||.+++|++++|.+|.++. |..|..+|++|-.+
T Consensus 110 rapvlvalalie-~gmkyedave~ir~krrga~-n~kql~~lekyrpk 155 (173)
T KOG2836|consen 110 RAPVLVALALIE-AGMKYEDAVEMIRQKRRGAI-NSKQLLYLEKYRPK 155 (173)
T ss_pred cchHHHHHHHHH-ccccHHHHHHHHHHHhhccc-cHHHHHHHHHhCcc
Confidence 999999988884 69999999999999999875 99999999998644
No 17
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.63 E-value=6.6e-16 Score=110.01 Aligned_cols=98 Identities=24% Similarity=0.350 Sum_probs=65.1
Q ss_pred cccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccC-CC-----ccchhcCCcEEEEEeCCCCCCCCcHHHHHHHH
Q 028500 61 WDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETL-VP-----SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAV 134 (208)
Q Consensus 61 ~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~-~~-----~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~ 134 (208)
+.+|++.+++++++.+.+++.|++.|+++|||++.+.|.. .| ....+..|+.|+++|+... .+..+.+..+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~ 79 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFA 79 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHH
Confidence 3579999999999999999999999999999999775532 12 2356789999999999865 45666777766
Q ss_pred HHHHHHhhCCCcEEEEcCCCCCchHHHHHH
Q 028500 135 DFIHSNSCAGKTTYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 135 ~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 164 (208)
+.++. .++|||+||+.|. ||+++.+.
T Consensus 80 ~~l~~---~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 80 DALES---LPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHHT---TTTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHHh---CCCCEEEECCCCh-hHHHHHHH
Confidence 66655 3589999999997 99876654
No 18
>PLN02727 NAD kinase
Probab=99.56 E-value=1.5e-14 Score=132.40 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=86.5
Q ss_pred ceEEcCCCCCCChhHHHhCCCcEEEEecCCCccCCC-----ccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHh
Q 028500 67 FLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVP-----SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNS 141 (208)
Q Consensus 67 ~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~~-----~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~ 141 (208)
.+|++++|.+.+++.|++.||++|||++.+.+...+ .+..+..|++|+++|+.+.. +|..+++.++.+.+++.
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~-apt~EqVe~fa~~l~~s- 339 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRT-APSAEQVEKFASLVSDS- 339 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCC-CCCHHHHHHHHHHHHhh-
Confidence 589999999999999999999999999987663111 23455689999999998764 78889999999988553
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
.++|||+||+.|.+|+|+|++||+.+.-+.
T Consensus 340 -lpkPVLvHCKSGarRAGamvA~yl~~~~~~ 369 (986)
T PLN02727 340 -SKKPIYLHSKEGVWRTSAMVSRWKQYMTRS 369 (986)
T ss_pred -cCCCEEEECCCCCchHHHHHHHHHHHHccc
Confidence 359999999999999999999999976654
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.55 E-value=8.3e-14 Score=97.78 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=69.9
Q ss_pred EEEEEeCCCCCCCCcHHHHHHHHHHHHHHhh---CCCcEEEEcCCCCCchHHHHHHHHHHhC------CCCHHHHHHHHH
Q 028500 112 DHLVIPTRDYLFAPSFVDIRRAVDFIHSNSC---AGKTTYVHCKAGRGRSTTIVLCYLVEYK------HMAPAAALEYVR 182 (208)
Q Consensus 112 ~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~v~~ayL~~~~------~~s~~~A~~~vr 182 (208)
.|..|| |...+...+.+.++++.+.+... .++||+|||.+|.||||+++++|++... ..++.+++..+|
T Consensus 6 ~~~~Wp--d~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 6 HYTGWP--DHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred eeCCCC--CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 344444 44434444777778887777664 2689999999999999999999988652 368999999999
Q ss_pred HhCCCCccCHHHHHHHHHH
Q 028500 183 CRRPRVLLAPSQWKLISPS 201 (208)
Q Consensus 183 ~~Rp~~~~~~~~~~~L~~~ 201 (208)
.+||+...+..|+.++...
T Consensus 84 ~~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00012 84 KQRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhhCCcHHHHHHHHHH
Confidence 9999999999999998764
No 20
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.55 E-value=8.3e-14 Score=97.78 Aligned_cols=88 Identities=20% Similarity=0.225 Sum_probs=69.9
Q ss_pred EEEEEeCCCCCCCCcHHHHHHHHHHHHHHhh---CCCcEEEEcCCCCCchHHHHHHHHHHhC------CCCHHHHHHHHH
Q 028500 112 DHLVIPTRDYLFAPSFVDIRRAVDFIHSNSC---AGKTTYVHCKAGRGRSTTIVLCYLVEYK------HMAPAAALEYVR 182 (208)
Q Consensus 112 ~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~v~~ayL~~~~------~~s~~~A~~~vr 182 (208)
.|..|| |...+...+.+.++++.+.+... .++||+|||.+|.||||+++++|++... ..++.+++..+|
T Consensus 6 ~~~~Wp--d~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 6 HYTGWP--DHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred eeCCCC--CCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 344444 44434444777778887777664 2689999999999999999999988652 368999999999
Q ss_pred HhCCCCccCHHHHHHHHHH
Q 028500 183 CRRPRVLLAPSQWKLISPS 201 (208)
Q Consensus 183 ~~Rp~~~~~~~~~~~L~~~ 201 (208)
.+||+...+..|+.++...
T Consensus 84 ~~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00404 84 KQRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhhCCcHHHHHHHHHH
Confidence 9999999999999998764
No 21
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.51 E-value=2.8e-13 Score=106.47 Aligned_cols=120 Identities=20% Similarity=0.246 Sum_probs=95.1
Q ss_pred ccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCC-------CCCcHHHHHHHH
Q 028500 62 DEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYL-------FAPSFVDIRRAV 134 (208)
Q Consensus 62 ~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~-------~~~~~~~~~~~~ 134 (208)
+.|+++||.|++|.+.++.+|+.++.++||.|+.+..+...-.+++.++|++++|.+.... .....+.+..++
T Consensus 61 s~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~l 140 (249)
T KOG1572|consen 61 SMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKAL 140 (249)
T ss_pred cccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHHH
Confidence 3488899999999999999999999999999999864333445889999999999995543 112235567777
Q ss_pred HHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 028500 135 DFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCR 184 (208)
Q Consensus 135 ~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~ 184 (208)
+++... .+.|+||||..|..|+|+++.|.- +.++|++...+...+..
T Consensus 141 ~~lld~--~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 141 KVLLDK--RNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRF 187 (249)
T ss_pred HHHhcc--cCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHh
Confidence 765443 468999999999999999999977 67899988877655543
No 22
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.44 E-value=8.7e-13 Score=106.06 Aligned_cols=91 Identities=16% Similarity=0.226 Sum_probs=71.0
Q ss_pred cEEEEEe-CCCCCCCCcHHHHHHHHHHHHHHhh--CCCcEEEEcCCCCCchHHHHHHHHHHh-----CCCCHHHHHHHHH
Q 028500 111 IDHLVIP-TRDYLFAPSFVDIRRAVDFIHSNSC--AGKTTYVHCKAGRGRSTTIVLCYLVEY-----KHMAPAAALEYVR 182 (208)
Q Consensus 111 i~~~~ip-~~D~~~~~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~s~~~A~~~vr 182 (208)
+.++++. +.|...++....+.+++..+++... .++||+|||.+|.||||++++++++.. ..+++.+++..+|
T Consensus 130 V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR 209 (231)
T cd00047 130 VTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELR 209 (231)
T ss_pred EEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4444444 2444434455677777777776653 368999999999999999999987643 3589999999999
Q ss_pred HhCCCCccCHHHHHHHHHH
Q 028500 183 CRRPRVLLAPSQWKLISPS 201 (208)
Q Consensus 183 ~~Rp~~~~~~~~~~~L~~~ 201 (208)
++||+++.+..|+.++...
T Consensus 210 ~~R~~~v~~~~Qy~f~~~~ 228 (231)
T cd00047 210 SQRPGMVQTEEQYIFLYRA 228 (231)
T ss_pred hccccccCCHHHHHHHHHH
Confidence 9999999999999999864
No 23
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.44 E-value=2.1e-12 Score=91.23 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=88.4
Q ss_pred ccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccC-CC-----ccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHH
Q 028500 62 DEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETL-VP-----SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVD 135 (208)
Q Consensus 62 ~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~-~~-----~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~ 135 (208)
.+|++.+.+++++...|+..++.+|+++|||.....|.+ .| ....+..|+.|.++|+... ....+.++.+.+
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~~ 81 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQR 81 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHHH
Confidence 469999999999999999999999999999999876542 22 2345678999999999775 344555555555
Q ss_pred HHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 028500 136 FIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCR 184 (208)
Q Consensus 136 ~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~ 184 (208)
.+.+ .++|||.||+.|- ||.++-..-. ...||+.++..++-+..
T Consensus 82 Al~e---aegPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 82 ALDE---AEGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred HHHH---hCCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 5554 3699999999996 8866554444 56899999988765543
No 24
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.42 E-value=9.9e-13 Score=107.50 Aligned_cols=83 Identities=20% Similarity=0.272 Sum_probs=66.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhC-CCcEEEEcCCCCCchHHHHHHHHHHh-----CCCCHHHHHHHHHHhCCCCccCH
Q 028500 119 RDYLFAPSFVDIRRAVDFIHSNSCA-GKTTYVHCKAGRGRSTTIVLCYLVEY-----KHMAPAAALEYVRCRRPRVLLAP 192 (208)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~s~~~A~~~vr~~Rp~~~~~~ 192 (208)
.|...+.....+.+++..+...... ++||+|||.+|.||||++++++++.. ..+++.+++..+|++|++++.+.
T Consensus 167 ~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~ 246 (258)
T smart00194 167 PDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTE 246 (258)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCH
Confidence 3444333556677777777666543 68999999999999999999987632 46799999999999999999999
Q ss_pred HHHHHHHHH
Q 028500 193 SQWKLISPS 201 (208)
Q Consensus 193 ~~~~~L~~~ 201 (208)
.|+.++.+.
T Consensus 247 ~Qy~f~~~~ 255 (258)
T smart00194 247 EQYIFLYRA 255 (258)
T ss_pred HHHHHHHHH
Confidence 999998764
No 25
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.38 E-value=5.2e-12 Score=109.66 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=74.2
Q ss_pred cEEEEEeC-CCCCCCCcHHHHHHHHHHHHHHhhC----------CCcEEEEcCCCCCchHHHHHHHHHHhCC-CCHHHHH
Q 028500 111 IDHLVIPT-RDYLFAPSFVDIRRAVDFIHSNSCA----------GKTTYVHCKAGRGRSTTIVLCYLVEYKH-MAPAAAL 178 (208)
Q Consensus 111 i~~~~ip~-~D~~~~~~~~~~~~~~~~i~~~~~~----------~~~VlVHC~~G~~RS~~v~~ayL~~~~~-~s~~~A~ 178 (208)
+.++|+.- +|++.++....+..+++.++..... ++| +|||.+|+||||+++++++++..+ .++++.+
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~P-VVHCSAGVGRTGTFIAi~llk~~~~~sle~IV 501 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLP-MIHCLGGVGRTGTMAAALVLKDNPHSNLEQVR 501 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCc-eEEcCCCCchHHHHHHHHHHhccccCCHHHHH
Confidence 34455543 6655455556677777777654322 234 799999999999999999997655 4999999
Q ss_pred HHHHHhCCC-CccCHHHHHHHHHHHHhhc
Q 028500 179 EYVRCRRPR-VLLAPSQWKLISPSQSRSI 206 (208)
Q Consensus 179 ~~vr~~Rp~-~~~~~~~~~~L~~~~~~l~ 206 (208)
..+|..|++ ++.+..|+.+|.+...+++
T Consensus 502 ~dlR~qRng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 502 ADFRNSRNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred HHHHhcCCccccccHHHHHHHHHHHHHHh
Confidence 999999998 9999999999999988875
No 26
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.32 E-value=7.4e-12 Score=105.10 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=66.4
Q ss_pred CCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhh-----------CCCcEEEEcCCCCCchHHHHHHHHH-----HhCCC
Q 028500 109 HGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSC-----------AGKTTYVHCKAGRGRSTTIVLCYLV-----EYKHM 172 (208)
Q Consensus 109 ~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~-----------~~~~VlVHC~~G~~RS~~v~~ayL~-----~~~~~ 172 (208)
..+.|..||..+. +.....|.+++..++...+ ..+||+|||.+|+||||++|+...+ ....+
T Consensus 185 ~h~~y~~Wpd~~~--P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v 262 (312)
T PHA02747 185 SHFQCSEWFEDET--PSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAI 262 (312)
T ss_pred EEEEECCCCCCCC--CCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCC
Confidence 3445555664433 4445555555555544322 1279999999999999999887643 23467
Q ss_pred CHHHHHHHHHHhCCCCccCHHHHHHH---HHHHH
Q 028500 173 APAAALEYVRCRRPRVLLAPSQWKLI---SPSQS 203 (208)
Q Consensus 173 s~~~A~~~vr~~Rp~~~~~~~~~~~L---~~~~~ 203 (208)
+..+++..+|.+|++++.+..|+.++ .+.-.
T Consensus 263 ~v~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~ 296 (312)
T PHA02747 263 CLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLH 296 (312)
T ss_pred CHHHHHHHHHhccccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 55433
No 27
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.32 E-value=9.2e-12 Score=103.75 Aligned_cols=92 Identities=11% Similarity=0.058 Sum_probs=66.4
Q ss_pred CCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHh---------hCCCcEEEEcCCCCCchHHHHHHHHH-----HhCCCCH
Q 028500 109 HGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNS---------CAGKTTYVHCKAGRGRSTTIVLCYLV-----EYKHMAP 174 (208)
Q Consensus 109 ~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~---------~~~~~VlVHC~~G~~RS~~v~~ayL~-----~~~~~s~ 174 (208)
..+.|..||..+. +.....|-+++..+++.. ...+||+|||.+|+||||++|+...+ ..+.+++
T Consensus 179 ~Hfqyt~WPd~gv--P~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi 256 (298)
T PHA02740 179 SHFQYTAWPADGF--SHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSI 256 (298)
T ss_pred EEEeecCCCCCCc--CCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccH
Confidence 4556666665443 444445555554444321 12479999999999999998876543 2345699
Q ss_pred HHHHHHHHHhCCCCccCHHHHHHHHHHH
Q 028500 175 AAALEYVRCRRPRVLLAPSQWKLISPSQ 202 (208)
Q Consensus 175 ~~A~~~vr~~Rp~~~~~~~~~~~L~~~~ 202 (208)
.+++..+|.+|++++.+..|+.++.+--
T Consensus 257 ~~~V~~lR~qR~~~Vqt~~QY~F~y~~l 284 (298)
T PHA02740 257 ANALKKVRQKKYGCMNCLDDYVFCYHLI 284 (298)
T ss_pred HHHHHHHHhhCccccCCHHHHHHHHHHH
Confidence 9999999999999999999999987643
No 28
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.30 E-value=9.7e-12 Score=103.99 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=66.0
Q ss_pred CcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhh------------CCCcEEEEcCCCCCchHHHHHHHHHH-----hCCC
Q 028500 110 GIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSC------------AGKTTYVHCKAGRGRSTTIVLCYLVE-----YKHM 172 (208)
Q Consensus 110 gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~------------~~~~VlVHC~~G~~RS~~v~~ayL~~-----~~~~ 172 (208)
.+.|..|| |.+.+.....|-+++..+++... ..+||+|||.+|+||||++++...+. ....
T Consensus 185 h~~y~~Wp--d~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v 262 (303)
T PHA02742 185 HFAYEDWP--HGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAII 262 (303)
T ss_pred EEEECCCC--CCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCC
Confidence 34455555 44435555566666666654221 13799999999999999988766543 2356
Q ss_pred CHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Q 028500 173 APAAALEYVRCRRPRVLLAPSQWKLISPSQ 202 (208)
Q Consensus 173 s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~ 202 (208)
++.+++..+|++|++++.+..|+.++.+.-
T Consensus 263 ~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l 292 (303)
T PHA02742 263 PLLSIVRDLRKQRHNCLSLPQQYIFCYFIV 292 (303)
T ss_pred CHHHHHHHHHhhcccccCCHHHHHHHHHHH
Confidence 899999999999999999999999877543
No 29
>PHA02738 hypothetical protein; Provisional
Probab=99.27 E-value=2e-11 Score=102.83 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=66.1
Q ss_pred CCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhh--------------CCCcEEEEcCCCCCchHHHHHHHHH-----Hh
Q 028500 109 HGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSC--------------AGKTTYVHCKAGRGRSTTIVLCYLV-----EY 169 (208)
Q Consensus 109 ~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~--------------~~~~VlVHC~~G~~RS~~v~~ayL~-----~~ 169 (208)
..+.|..||..+. +.....|-+++..+++... .++||+|||.+|+||||++|+...+ ..
T Consensus 180 ~h~~y~~Wpd~gv--P~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~ 257 (320)
T PHA02738 180 THFNFTAWPDHDV--PKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDAC 257 (320)
T ss_pred EEEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhc
Confidence 3445555664433 4445556556555554321 1369999999999999998876543 23
Q ss_pred CCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHH
Q 028500 170 KHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQS 203 (208)
Q Consensus 170 ~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~ 203 (208)
..+++.+++..+|.+|++++.+..|+.++.+--.
T Consensus 258 ~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~ 291 (320)
T PHA02738 258 ATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVK 291 (320)
T ss_pred CCcCHHHHHHHHHhhhhhccCCHHHHHHHHHHHH
Confidence 4569999999999999999999999998876443
No 30
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.26 E-value=3e-11 Score=101.87 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=68.1
Q ss_pred CcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhh--------C---CCcEEEEcCCCCCchHHHHHHHHH-----HhCCCC
Q 028500 110 GIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSC--------A---GKTTYVHCKAGRGRSTTIVLCYLV-----EYKHMA 173 (208)
Q Consensus 110 gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~--------~---~~~VlVHC~~G~~RS~~v~~ayL~-----~~~~~s 173 (208)
.+.|..|| |.+.+.....|-+++..+++... . .+||+|||.+|+||||++|+...+ ....++
T Consensus 204 h~~y~~Wp--d~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vd 281 (323)
T PHA02746 204 HFWFPDWP--DNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVC 281 (323)
T ss_pred EEEECCCC--CCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCC
Confidence 44455555 44434455566666666654321 1 279999999999999999886543 234579
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHHhh
Q 028500 174 PAAALEYVRCRRPRVLLAPSQWKLISPSQSRS 205 (208)
Q Consensus 174 ~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~l 205 (208)
+.+++..+|.+|++++.+..|+.++.+.-...
T Consensus 282 v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~~ 313 (323)
T PHA02746 282 LGEIVLKIRKQRHSSVFLPEQYAFCYKALKYA 313 (323)
T ss_pred HHHHHHHHHhcccccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765443
No 31
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.23 E-value=2.8e-11 Score=92.52 Aligned_cols=111 Identities=20% Similarity=0.254 Sum_probs=58.7
Q ss_pred CceEEcCCCCC---CChhHHHhCCCcEEEEecCCCccC-CCccchhcCCcEEEEEeCCCCCCCC---cH----------H
Q 028500 66 QFLLLGAVPFP---KDVPRLKQLGVGGVITLNEPYETL-VPSSLYHAHGIDHLVIPTRDYLFAP---SF----------V 128 (208)
Q Consensus 66 ~~l~lG~~~~~---~~~~~L~~~gI~~Vi~l~~~~~~~-~~~~~~~~~gi~~~~ip~~D~~~~~---~~----------~ 128 (208)
..||.++.+.. .+...|+++||++||||..+.|.. .|... ..|++++++|+.+..... .. .
T Consensus 19 g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~--~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 96 (164)
T PF13350_consen 19 GRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPL--IDGVQYVHIPIFGDDASSPDKLAELLQSSADAPR 96 (164)
T ss_dssp TSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS------TT-EEEE--SS-S-TTH----------HHHHHH
T ss_pred CcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCC--cCCceeeeecccccccccccccccccccccchhh
Confidence 34899998864 566789999999999999876542 12222 349999999996654220 00 0
Q ss_pred HH------------HHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHH
Q 028500 129 DI------------RRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALE 179 (208)
Q Consensus 129 ~~------------~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~ 179 (208)
.+ ..+.+++.-.....+||||||.+|+.|||.+++..|. ..|++.++.++
T Consensus 97 ~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~-~lGV~~~~I~~ 158 (164)
T PF13350_consen 97 GMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLS-LLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHH-HTT--HHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHH-HcCCCHHHHHH
Confidence 00 0111112222234579999999999999999888765 57998877653
No 32
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=99.19 E-value=9.6e-11 Score=101.51 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=104.5
Q ss_pred ccccCceEEcCCCCCCChh-----------HHHh--CCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHH
Q 028500 62 DEVDQFLLLGAVPFPKDVP-----------RLKQ--LGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFV 128 (208)
Q Consensus 62 ~~I~~~l~lG~~~~~~~~~-----------~L~~--~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~ 128 (208)
+-|+++|...++|...... .|.. .|=-.|-||+.+. .++...+ .-+...+++.|.. +|.++
T Consensus 16 tYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er--~yd~~~f---~g~V~~~~~~Dh~-~P~L~ 89 (434)
T KOG2283|consen 16 TYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSER--LYDPSRF---HGRVARFGFDDHN-PPPLE 89 (434)
T ss_pred eeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccc--cCCcccc---ccceeecCCCCCC-CCcHH
Confidence 5588999999999865432 2222 2334578888632 2222222 1234568999986 88999
Q ss_pred HHHHHHHHHHHHhhC--CCcEEEEcCCCCCchHHHHHHHHHHhCCC-CHHHHHHHHHHhC---C--CCccCHHHHHHHHH
Q 028500 129 DIRRAVDFIHSNSCA--GKTTYVHCKAGRGRSTTIVLCYLVEYKHM-APAAALEYVRCRR---P--RVLLAPSQWKLISP 200 (208)
Q Consensus 129 ~~~~~~~~i~~~~~~--~~~VlVHC~~G~~RS~~v~~ayL~~~~~~-s~~~A~~~vr~~R---p--~~~~~~~~~~~L~~ 200 (208)
.+..+++-++.++.+ ...|.|||++|++|||+|++|||++.... ++++|+.+.-.+| . .....++|.+++..
T Consensus 90 ~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y 169 (434)
T KOG2283|consen 90 LLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGY 169 (434)
T ss_pred HHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHH
Confidence 999999999999887 36799999999999999999999987666 5999999999999 4 35679999999999
Q ss_pred HHHh
Q 028500 201 SQSR 204 (208)
Q Consensus 201 ~~~~ 204 (208)
|..-
T Consensus 170 ~~~~ 173 (434)
T KOG2283|consen 170 FSRV 173 (434)
T ss_pred HHHH
Confidence 9873
No 33
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=99.10 E-value=3.9e-10 Score=95.85 Aligned_cols=122 Identities=20% Similarity=0.258 Sum_probs=76.9
Q ss_pred ChhHHHhCCCcEEEEecCCCccCCC------------ccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHH---HHhh
Q 028500 78 DVPRLKQLGVGGVITLNEPYETLVP------------SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIH---SNSC 142 (208)
Q Consensus 78 ~~~~L~~~gI~~Vi~l~~~~~~~~~------------~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~---~~~~ 142 (208)
+...++.+|+-.|=|+.+.....+. ......-...|+.||.++.+..|-- +..+++-++ +.+.
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~--vLnFLe~V~~rq~~l~ 449 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGG--VLNFLEEVNHRQESLM 449 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccH--HHHHHHHhhhhhcccc
Confidence 3446777898888888653221110 1111122345666776665444421 222222222 2233
Q ss_pred CCCcEEEEcCCCCCchHHHHHH-HHH---HhC----CCCHHHHHHHHHHhCCCCccCHHHHHHHHHH
Q 028500 143 AGKTTYVHCKAGRGRSTTIVLC-YLV---EYK----HMAPAAALEYVRCRRPRVLLAPSQWKLISPS 201 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~~a-yL~---~~~----~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~ 201 (208)
..+||.|||.+|+|||||+++. .|| +.. .++....+.+||++|.+++.++.||+++..-
T Consensus 450 ~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~A 516 (600)
T KOG0790|consen 450 DAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVA 516 (600)
T ss_pred ccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHHH
Confidence 3579999999999999996543 232 233 4689999999999999999999999998753
No 34
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.08 E-value=9e-10 Score=88.11 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=65.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHh-hCCCcEEEEcCCCCCchHHHHHHHHHHh-----CCCCHHHHHHHHHHhCCCCccCH
Q 028500 119 RDYLFAPSFVDIRRAVDFIHSNS-CAGKTTYVHCKAGRGRSTTIVLCYLVEY-----KHMAPAAALEYVRCRRPRVLLAP 192 (208)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~i~~~~-~~~~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~s~~~A~~~vr~~Rp~~~~~~ 192 (208)
.+...++....+..+++.+.+.. ..++||+|||..|.||||+++++.++.. ...+..+++..+|.+||+++.+.
T Consensus 144 ~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~ 223 (235)
T PF00102_consen 144 PDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSP 223 (235)
T ss_dssp SSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSH
T ss_pred cccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCH
Confidence 33332334555666666666665 3358999999999999999998887632 45799999999999999999999
Q ss_pred HHHHHHHHH
Q 028500 193 SQWKLISPS 201 (208)
Q Consensus 193 ~~~~~L~~~ 201 (208)
.|+.++...
T Consensus 224 ~qy~f~~~~ 232 (235)
T PF00102_consen 224 EQYRFCYMA 232 (235)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999865
No 35
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=99.07 E-value=5.3e-10 Score=103.31 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=71.5
Q ss_pred cEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC-CCcEEEEcCCCCCchHHHHHHH----HHHh-CCCCHHHHHHHHHHh
Q 028500 111 IDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA-GKTTYVHCKAGRGRSTTIVLCY----LVEY-KHMAPAAALEYVRCR 184 (208)
Q Consensus 111 i~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ay----L~~~-~~~s~~~A~~~vr~~ 184 (208)
++|..||-++. +...+.|..+++.|+..+.. +.||+|||.+|+||||++++.- |+.+ ..+.+.+.++.+|.+
T Consensus 1031 LQYtaWPDHg~--P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~Q 1108 (1144)
T KOG0792|consen 1031 LQYTAWPDHGV--PDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQ 1108 (1144)
T ss_pred eeecccccCCC--CCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 45555666554 55667788888888888776 6799999999999999977533 3322 456899999999999
Q ss_pred CCCCccCHHHHHHHHHHH
Q 028500 185 RPRVLLAPSQWKLISPSQ 202 (208)
Q Consensus 185 Rp~~~~~~~~~~~L~~~~ 202 (208)
|-.++++..||.|+.+--
T Consensus 1109 R~~mVQT~~QYkFVyevi 1126 (1144)
T KOG0792|consen 1109 RAMMVQTLSQYKFVYEVI 1126 (1144)
T ss_pred HhhhccchHHhhHHHHHH
Confidence 999999999999988644
No 36
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.04 E-value=2e-09 Score=79.44 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=82.2
Q ss_pred ChhHHHhCCCcEEEEecCCCccC-CCccchhcCCcEEEEEeCCC-----CC-CCCcHHHHHHHHHHHHHHhhCCCcEEEE
Q 028500 78 DVPRLKQLGVGGVITLNEPYETL-VPSSLYHAHGIDHLVIPTRD-----YL-FAPSFVDIRRAVDFIHSNSCAGKTTYVH 150 (208)
Q Consensus 78 ~~~~L~~~gI~~Vi~l~~~~~~~-~~~~~~~~~gi~~~~ip~~D-----~~-~~~~~~~~~~~~~~i~~~~~~~~~VlVH 150 (208)
..+.-.+.|-+++|++....+.. .|...... +++.+-++| .+ ..|...+.+..++|++++-+. .+++||
T Consensus 24 ~ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~e---rhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIH 99 (172)
T COG5350 24 IAETAARHGPTHMLSLLAKGTYFHRPAVIAAE---RHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIH 99 (172)
T ss_pred HHHHHhhcCCceEEEeecccccccCccccchh---hceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeee
Confidence 34455578999999998754321 12111111 233333333 22 467788999999999998765 899999
Q ss_pred cCCCCCchHHHHHH-HHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHH
Q 028500 151 CKAGRGRSTTIVLC-YLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKL 197 (208)
Q Consensus 151 C~~G~~RS~~v~~a-yL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~ 197 (208)
|.+|+|||.++++. -|.....++..++.+.+|..+|...||+.....
T Consensus 100 C~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI 147 (172)
T COG5350 100 CYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAI 147 (172)
T ss_pred eccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHH
Confidence 99999999886643 344467889999999999999999999876543
No 37
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.01 E-value=5.7e-10 Score=89.32 Aligned_cols=144 Identities=15% Similarity=0.222 Sum_probs=82.2
Q ss_pred ccCCCcccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccC-CCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHH
Q 028500 56 AEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETL-VPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAV 134 (208)
Q Consensus 56 ~~~~~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~-~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~ 134 (208)
+...|+..+++.+.+|..-....-.. .-...++++.. ++.. .......-+.+.|..| .|.. .|....+.+..
T Consensus 136 c~qYWp~~~~~~~~~G~~v~~~~~~e---~~~d~~~~~~~-f~L~~~~~~~k~Ihhf~y~nW--~D~~-~p~i~sl~~~~ 208 (302)
T COG5599 136 CDQYWPLGYDDTLIIGLRVIKQKKYE---LFNDNIVNVHN-FELTSINGPPKKIHHFQYINW--VDFN-VPDIRSLTEVI 208 (302)
T ss_pred HhhhCCCCcCcceeeeeEEEEEeccc---ccccceeeeee-cccccCCCCccEEEEEEecCc--cccC-CcCHHHHHHHH
Confidence 36778888888888884322221111 12223344322 1111 1111111223333333 4443 44333333333
Q ss_pred HHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCC-C-------------HHHHHHHHHHhCCCCccCHHHHHHHHH
Q 028500 135 DFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM-A-------------PAAALEYVRCRRPRVLLAPSQWKLISP 200 (208)
Q Consensus 135 ~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~-s-------------~~~A~~~vr~~Rp~~~~~~~~~~~L~~ 200 (208)
.-+...-.+++|++|||.||+|||||+++.-.+...-- + ..+.+..+|++|-+++.|..|..+|..
T Consensus 209 ~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~~Qf~flY~ 288 (302)
T COG5599 209 HSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLYD 288 (302)
T ss_pred HHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333212468999999999999999887665543211 1 345778899999999999999999998
Q ss_pred HHHhhc
Q 028500 201 SQSRSI 206 (208)
Q Consensus 201 ~~~~l~ 206 (208)
....+.
T Consensus 289 ~~~~l~ 294 (302)
T COG5599 289 AFLELN 294 (302)
T ss_pred HHHHHH
Confidence 766553
No 38
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.95 E-value=1.4e-09 Score=81.79 Aligned_cols=64 Identities=33% Similarity=0.491 Sum_probs=49.1
Q ss_pred ccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHH
Q 028500 103 SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVE 168 (208)
Q Consensus 103 ~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~ 168 (208)
....+..|+.|+++|+.|.. .|..+.|+++++++... ..+..+.+||.+|.|||.+..+.|.|.
T Consensus 85 ~~~~~~~g~~Y~Ripitd~~-~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 85 EELVEGNGLRYYRIPITDHQ-APDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHHHHTT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCcC-CCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34566789999999999986 89999999999999988 667899999999999999988877763
No 39
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.85 E-value=1.2e-08 Score=83.07 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=79.7
Q ss_pred ccCceEEcCCCCCCChh--HHHhCCCcEEEEecCCCcc---CCCccc---hhcCCcEEEEEeCCCCCCCCcHHHHHHHHH
Q 028500 64 VDQFLLLGAVPFPKDVP--RLKQLGVGGVITLNEPYET---LVPSSL---YHAHGIDHLVIPTRDYLFAPSFVDIRRAVD 135 (208)
Q Consensus 64 I~~~l~lG~~~~~~~~~--~L~~~gI~~Vi~l~~~~~~---~~~~~~---~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~ 135 (208)
+....|.++.|...+.. .....+++.++++..+... ...... ....++....++..... ....+.+...+.
T Consensus 51 ~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~ 129 (249)
T COG2365 51 IPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTR-EDAAERLVELLQ 129 (249)
T ss_pred cceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccc-hhhHHHHHHHHH
Confidence 44568999999987776 6778999999999862111 111111 11222222333332221 222333444333
Q ss_pred HHHHHhhC-CCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCH
Q 028500 136 FIHSNSCA-GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAP 192 (208)
Q Consensus 136 ~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~ 192 (208)
.+ +.. ++|||+||.+|..|||.++++|+...++.....+-+++...++......
T Consensus 130 l~---~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 130 LL---ADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HH---hhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 33 333 4999999999999999999999998777677778888888887665554
No 40
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.76 E-value=1.6e-08 Score=85.98 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=101.0
Q ss_pred cCceEEcCC-CCC-CChhHHHh--CCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHH----HH
Q 028500 65 DQFLLLGAV-PFP-KDVPRLKQ--LGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAV----DF 136 (208)
Q Consensus 65 ~~~l~lG~~-~~~-~~~~~L~~--~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~----~~ 136 (208)
.+.++-|++ -.. ..+..|+. .-+.-+|+++.... .++...+...|+.|+.+........|.......++ .|
T Consensus 38 ~~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~r-yy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f 116 (393)
T KOG2386|consen 38 STKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLR-YYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGF 116 (393)
T ss_pred CcCCCCCccccCHHHHHHHHHhcCceEEEEEeccceee-eeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHH
Confidence 344444552 222 33455555 45778999987543 23566677899999999887765455444443333 33
Q ss_pred HHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHHh
Q 028500 137 IHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPSQSR 204 (208)
Q Consensus 137 i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~ 204 (208)
.......++=|+|||..|.+|+|-++++||+...+++..+|++.+...||.....+.....|...+..
T Consensus 117 ~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~ 184 (393)
T KOG2386|consen 117 VDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHD 184 (393)
T ss_pred HhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccc
Confidence 44444457889999999999999999999999999999999999999999888888888888776543
No 41
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=98.68 E-value=1.7e-07 Score=78.41 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=67.1
Q ss_pred CcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC-CCcEEEEcCCCCCchHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 028500 110 GIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA-GKTTYVHCKAGRGRSTTIVLCYLVEY-----KHMAPAAALEYVRC 183 (208)
Q Consensus 110 gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~s~~~A~~~vr~ 183 (208)
.+.|..||....+ .....+.+++....+.... ++|++|||.+|+|||||+.+.--+.. .-.+....+..+|+
T Consensus 254 ~f~y~~wPd~gvp--~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~ 331 (374)
T KOG0791|consen 254 HFHYTAWPDFGVP--SSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRS 331 (374)
T ss_pred EEEEeeccccCCC--CCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhh
Confidence 3455555554443 2233455555555555544 58999999999999999887654432 13467788999999
Q ss_pred hCCCCccCHHHHHHHHHHHHhhc
Q 028500 184 RRPRVLLAPSQWKLISPSQSRSI 206 (208)
Q Consensus 184 ~Rp~~~~~~~~~~~L~~~~~~l~ 206 (208)
.|+.+++|..|+.+|.+-....+
T Consensus 332 ~R~~mVqte~Qyvfl~~c~~~~l 354 (374)
T KOG0791|consen 332 ARMLMVQTEDQYVFLHQCVLESL 354 (374)
T ss_pred ccccccchHHHHHHHHHHHHHHH
Confidence 99999999999999997665443
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.44 E-value=1.5e-06 Score=75.64 Aligned_cols=61 Identities=28% Similarity=0.380 Sum_probs=48.0
Q ss_pred CCCcEEEEcCCCCCchHHHHHHHHH-Hh--C---CCCHHHHHHHHHHhCCCCccCHHHHHHHHHHHH
Q 028500 143 AGKTTYVHCKAGRGRSTTIVLCYLV-EY--K---HMAPAAALEYVRCRRPRVLLAPSQWKLISPSQS 203 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~~ayL~-~~--~---~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~ 203 (208)
..+|+.|||.+|+||||++++...+ .. . ..+..+.+..+|.+|++++.+..|+.++..-..
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~~ 364 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIYAATL 364 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Confidence 3589999999999999999865422 11 2 235888889999999999999999988775443
No 43
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.38 E-value=1.1e-05 Score=70.78 Aligned_cols=134 Identities=14% Similarity=0.136 Sum_probs=98.7
Q ss_pred ccCceEEcCCCCCCCh----hHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCC--CCcHHHHHHHHHHH
Q 028500 64 VDQFLLLGAVPFPKDV----PRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLF--APSFVDIRRAVDFI 137 (208)
Q Consensus 64 I~~~l~lG~~~~~~~~----~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~--~~~~~~~~~~~~~i 137 (208)
++.+||+|.....-.. ..-....+..||+|.+..... .-......++++|+..... ..+...+.+++.|+
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~----~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv 367 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPK----ESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFV 367 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccc----cccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHH
Confidence 4669999998763221 111235688999998754211 1123556788899866532 23557789999999
Q ss_pred HHHhhC--CCcEEEEcCCCCCchHHHHHHHHHHhCCCC----------------HHHHHHHHHHhCCCCccCHHHHHHHH
Q 028500 138 HSNSCA--GKTTYVHCKAGRGRSTTIVLCYLVEYKHMA----------------PAAALEYVRCRRPRVLLAPSQWKLIS 199 (208)
Q Consensus 138 ~~~~~~--~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s----------------~~~A~~~vr~~Rp~~~~~~~~~~~L~ 199 (208)
...+.. +++|+|+|..|...|..|++|.|+..+.-+ ..+-+..+-+.+|.+.|+.+..+.+.
T Consensus 368 ~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVN 447 (451)
T PF04179_consen 368 RSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVN 447 (451)
T ss_pred HHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 999888 899999999999999999999998775321 33456777888999999999999998
Q ss_pred HH
Q 028500 200 PS 201 (208)
Q Consensus 200 ~~ 201 (208)
.|
T Consensus 448 sF 449 (451)
T PF04179_consen 448 SF 449 (451)
T ss_pred Hh
Confidence 77
No 44
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.28 E-value=1.9e-06 Score=80.92 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhC----CCcEEEEcCCCCCchHHHHH-----HHHHHhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHH
Q 028500 132 RAVDFIHSNSCA----GKTTYVHCKAGRGRSTTIVL-----CYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPS 201 (208)
Q Consensus 132 ~~~~~i~~~~~~----~~~VlVHC~~G~~RS~~v~~-----ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~ 201 (208)
..+.|+.+...- .||++|||.+|+||||++++ -.+......+...-+..+|.+|++++.+..||-++.+-
T Consensus 714 ~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~A 792 (1087)
T KOG4228|consen 714 GLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEA 792 (1087)
T ss_pred HHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHHHHHH
Confidence 345555554433 39999999999999999543 33344456689999999999999999999999988753
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.28 E-value=2.1e-06 Score=80.61 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=67.7
Q ss_pred cEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC--CCcEEEEcCCCCCchHHHHHHHH----HHhC-CCCHHHHHHHHHH
Q 028500 111 IDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA--GKTTYVHCKAGRGRSTTIVLCYL----VEYK-HMAPAAALEYVRC 183 (208)
Q Consensus 111 i~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~--~~~VlVHC~~G~~RS~~v~~ayL----~~~~-~~s~~~A~~~vr~ 183 (208)
++|..||..+.. +.....+...........+. .+|+.|||..|.||||+++++-+ |+.. -++..++++.+|.
T Consensus 984 fq~~~WP~~~~~-p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~ 1062 (1087)
T KOG4228|consen 984 FQFTGWPEYGKP-PQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRF 1062 (1087)
T ss_pred EEecCCcccCcC-CCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhh
Confidence 455667775542 33333334333333333332 58999999999999999886544 3333 4599999999999
Q ss_pred hCCCCccCHHHHHHHHHHHHhhcc
Q 028500 184 RRPRVLLAPSQWKLISPSQSRSIS 207 (208)
Q Consensus 184 ~Rp~~~~~~~~~~~L~~~~~~l~~ 207 (208)
.||+++.+..||+++++-....++
T Consensus 1063 ~rp~mv~t~~QY~fcYdv~~~y~~ 1086 (1087)
T KOG4228|consen 1063 QRPGMVDTSDQYQFCYDVALEYLG 1086 (1087)
T ss_pred cCccccCcHHHHHHHHHHHHHhhc
Confidence 999999999999999987666554
No 46
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.27 E-value=2.1e-06 Score=77.09 Aligned_cols=88 Identities=23% Similarity=0.310 Sum_probs=61.2
Q ss_pred cEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC-CCcEEEEcCCCCCchHHHHHHHH----HHh--CCCCHHHHHHHHHH
Q 028500 111 IDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA-GKTTYVHCKAGRGRSTTIVLCYL----VEY--KHMAPAAALEYVRC 183 (208)
Q Consensus 111 i~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ayL----~~~--~~~s~~~A~~~vr~ 183 (208)
+.|+.||.... +.+...+..+-.-++++..- ..||+|||..|.||||+-++.-+ |.+ ..++....++++|.
T Consensus 895 FHfLSWp~egv--PasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRD 972 (1004)
T KOG0793|consen 895 FHFLSWPDEGV--PASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRD 972 (1004)
T ss_pred eeeecccccCC--ccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhh
Confidence 44555555443 44444455555555665542 47999999999999999543322 222 34688889999999
Q ss_pred hCCCCccCHHHHHHHHH
Q 028500 184 RRPRVLLAPSQWKLISP 200 (208)
Q Consensus 184 ~Rp~~~~~~~~~~~L~~ 200 (208)
+||+++-+..|.++...
T Consensus 973 QR~GmVaTkdQFef~l~ 989 (1004)
T KOG0793|consen 973 QRPGMVATKDQFEFALT 989 (1004)
T ss_pred cCCcceeehhhhHHHHH
Confidence 99999999999988764
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.79 E-value=0.0047 Score=45.81 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=43.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhC---CCcEEEEcCCCCC--ch--HHHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 028500 119 RDYLFAPSFVDIRRAVDFIHSNSCA---GKTTYVHCKAGRG--RS--TTIVLCYLVEYKHMAPAAALEYVRCRRP 186 (208)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~i~~~~~~---~~~VlVHC~~G~~--RS--~~v~~ayL~~~~~~s~~~A~~~vr~~Rp 186 (208)
.|.+ +..+.++-+.+..+++.++. .++.+|||.+.-. |+ +.+++||+|...|||+++|++-+...-|
T Consensus 39 ~DFG-PlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 39 ADFG-PLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp S-------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CcCC-CccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 5665 66677888888888887776 4678888876544 43 5688999999999999999999987754
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.13 E-value=0.096 Score=47.17 Aligned_cols=35 Identities=29% Similarity=0.551 Sum_probs=24.3
Q ss_pred HHHHHHHHhhCCCcEEEEcCCCCCchHHHH-HHHHH
Q 028500 133 AVDFIHSNSCAGKTTYVHCKAGRGRSTTIV-LCYLV 167 (208)
Q Consensus 133 ~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~-~ayL~ 167 (208)
++...++....+.+|||||..|..||+-++ +|.||
T Consensus 363 a~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 363 AVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred HHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 334444444557899999999999998655 44444
No 49
>PLN02160 thiosulfate sulfurtransferase
Probab=92.54 E-value=0.2 Score=36.85 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=19.6
Q ss_pred hhCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+..+++|++||..| .||...+.. | ...|.
T Consensus 78 ~~~~~~IivyC~sG-~RS~~Aa~~-L-~~~G~ 106 (136)
T PLN02160 78 LNPADDILVGCQSG-ARSLKATTE-L-VAAGY 106 (136)
T ss_pred cCCCCcEEEECCCc-HHHHHHHHH-H-HHcCC
Confidence 34568999999999 488765433 3 34454
No 50
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=92.44 E-value=0.99 Score=30.89 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=18.9
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+++|+|+|..| .||... +.+|. ..|.
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L~-~~G~ 86 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYLK-ERGF 86 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHHH-HhCC
Confidence 4568999999998 488654 33443 4454
No 51
>PRK01415 hypothetical protein; Validated
Probab=92.39 E-value=0.3 Score=39.79 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=19.7
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+++|+++|..|+ ||.. ++++|.. .|.
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~k-Aa~~L~~-~Gf 196 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCEK-STSLLKS-IGY 196 (247)
T ss_pred cCCCeEEEECCCCh-HHHH-HHHHHHH-cCC
Confidence 45789999999996 8754 4555553 454
No 52
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=91.77 E-value=0.56 Score=32.34 Aligned_cols=67 Identities=19% Similarity=0.102 Sum_probs=37.9
Q ss_pred HhCCCcEEEEecCCCccCCCccchhcCCcE-EEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHH
Q 028500 83 KQLGVGGVITLNEPYETLVPSSLYHAHGID-HLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTI 161 (208)
Q Consensus 83 ~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~-~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v 161 (208)
...+-..+|++.++.+.. ..+-.. ..++|+.+.... ..... ...+++++|+|+.|. ||...
T Consensus 16 ~~~~~~~liDvR~~~e~~------~~~i~~~~~~ip~~~~~~~--~~~~~---------~~~~~~ivv~C~~G~-rS~~a 77 (110)
T COG0607 16 LAGEDAVLLDVREPEEYE------RGHIPGAAINIPLSELKAA--ENLLE---------LPDDDPIVVYCASGV-RSAAA 77 (110)
T ss_pred hccCCCEEEeccChhHhh------hcCCCcceeeeecccchhh--hcccc---------cCCCCeEEEEeCCCC-ChHHH
Confidence 344566899998764321 111122 567777665311 00001 556799999999996 88554
Q ss_pred HHHHHHH
Q 028500 162 VLCYLVE 168 (208)
Q Consensus 162 ~~ayL~~ 168 (208)
+.+|..
T Consensus 78 -a~~L~~ 83 (110)
T COG0607 78 -AAALKL 83 (110)
T ss_pred -HHHHHH
Confidence 444443
No 53
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=91.76 E-value=0.42 Score=43.16 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhC-CCcEEEEcCCCCCchHHHHH
Q 028500 131 RRAVDFIHSNSCA-GKTTYVHCKAGRGRSTTIVL 163 (208)
Q Consensus 131 ~~~~~~i~~~~~~-~~~VlVHC~~G~~RS~~v~~ 163 (208)
-++..+|.+++.. |-+|||||..|..||.-|+.
T Consensus 330 L~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~S 363 (573)
T KOG1089|consen 330 LKAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSS 363 (573)
T ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcchhHHHHH
Confidence 3445566667764 58999999999999988774
No 54
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=91.33 E-value=0.54 Score=40.36 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=18.8
Q ss_pred HHHh-hCCCcEEEEcCCCCCchHHHHH
Q 028500 138 HSNS-CAGKTTYVHCKAGRGRSTTIVL 163 (208)
Q Consensus 138 ~~~~-~~~~~VlVHC~~G~~RS~~v~~ 163 (208)
.+.+ ..|..|+|||..|.+||+-++.
T Consensus 224 ~~~l~~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 224 ADLLHDEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp HHHHHTT--EEEEECTTSSSHHHHHHH
T ss_pred HHHhhccCceEEEEcCCCCcccHHHHH
Confidence 3344 4688999999999999977664
No 55
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=89.03 E-value=2 Score=30.37 Aligned_cols=31 Identities=19% Similarity=0.059 Sum_probs=20.3
Q ss_pred hhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCC
Q 028500 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
...+.+|+|+|..| +++++.++..|. ..|.+
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l~-~~G~~ 106 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTLR-YFGHE 106 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHHH-HcCCC
Confidence 34568999999998 555555555444 44543
No 56
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=86.72 E-value=1.5 Score=36.95 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=19.3
Q ss_pred CCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
.+++|+|+|..|. ||.. ++.+|.. .|.
T Consensus 170 kdk~IvvyC~~G~-Rs~~-aa~~L~~-~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEK-ASAWMKH-EGF 196 (314)
T ss_pred CcCeEEEECCCCc-HHHH-HHHHHHH-cCC
Confidence 4689999999996 8854 4556654 454
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=84.44 E-value=3.2 Score=34.64 Aligned_cols=87 Identities=22% Similarity=0.230 Sum_probs=53.0
Q ss_pred ccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC
Q 028500 64 VDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA 143 (208)
Q Consensus 64 I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~ 143 (208)
|+|.-.+|.+..+.+...+-...=+.||+..+.+|.. +..-..-..|..+.|.++.+++.+..+.
T Consensus 105 v~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~---------------iG~F~gAv~p~~~tFrefP~~v~~~~~~ 169 (308)
T COG1054 105 VDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVA---------------IGHFEGAVEPDIETFREFPAWVEENLDL 169 (308)
T ss_pred cCccccccCccCHHHHHHHhcCCCeEEEEcCcceeEe---------------eeeecCccCCChhhhhhhHHHHHHHHHh
Confidence 5666666766666666555443336777777665521 1111112245566777777777766543
Q ss_pred --CCcEEEEcCCCCCchHHHHHHHHH
Q 028500 144 --GKTTYVHCKAGRGRSTTIVLCYLV 167 (208)
Q Consensus 144 --~~~VlVHC~~G~~RS~~v~~ayL~ 167 (208)
+++|...|..|+ |.=- +.+||.
T Consensus 170 ~~~KkVvmyCTGGI-RCEK-as~~m~ 193 (308)
T COG1054 170 LKDKKVVMYCTGGI-RCEK-ASAWMK 193 (308)
T ss_pred ccCCcEEEEcCCce-eehh-hHHHHH
Confidence 789999999999 7633 334444
No 58
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=80.72 E-value=5.2 Score=27.65 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=18.0
Q ss_pred CCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
.+.+|+|+|..|. ||.. ++..| +..|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L-~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSL-INAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHH-HHCCC
Confidence 3579999999996 7744 34444 34555
No 59
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=80.10 E-value=9.7 Score=27.18 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=27.9
Q ss_pred hHHHhCCCcEEEEecCCCccCCC-------ccchhcCCcEEEEEeCCC
Q 028500 80 PRLKQLGVGGVITLNEPYETLVP-------SSLYHAHGIDHLVIPTRD 120 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~~~~~~-------~~~~~~~gi~~~~ip~~D 120 (208)
..|+..||+.|||+..-.....| .......||.|.++|...
T Consensus 7 ~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg 54 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELG 54 (122)
T ss_pred HHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhc
Confidence 46788999999998753321111 124456899999998744
No 60
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=78.35 E-value=2.8 Score=28.51 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=18.9
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHHHhCCCC
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
..+++|+|+|..|. ||..++ ..|. ..|.+
T Consensus 59 ~~~~~ivv~C~~G~-rs~~aa-~~L~-~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQFVA-ELLA-ERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHHHH-HHHH-HcCce
Confidence 45689999999995 775543 3333 44543
No 61
>PRK05320 rhodanese superfamily protein; Provisional
Probab=77.07 E-value=5.7 Score=32.54 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=19.1
Q ss_pred CCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
++++|+++|..|. ||.. ++.+|.. .|.
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~-~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQE-VGI 200 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHH-cCC
Confidence 4689999999996 7755 4455553 454
No 62
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=74.78 E-value=16 Score=24.77 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=43.7
Q ss_pred CCCcEEEEecCCCccCCCccchhcCCc-EEEEEeCCCC---CCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHH
Q 028500 85 LGVGGVITLNEPYETLVPSSLYHAHGI-DHLVIPTRDY---LFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTT 160 (208)
Q Consensus 85 ~gI~~Vi~l~~~~~~~~~~~~~~~~gi-~~~~ip~~D~---~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 160 (208)
.+=..|||++.+.+ |....| .-+++|.... ........+.............+.+|+++|..|. |+..
T Consensus 11 ~~~~~liD~R~~~~-------~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~ 82 (113)
T PF00581_consen 11 NESVLLIDVRSPEE-------YERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGS 82 (113)
T ss_dssp TTTEEEEEESSHHH-------HHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHH
T ss_pred CCCeEEEEeCCHHH-------HHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccch
Confidence 34457888886432 111111 1356666321 1133445555555555555566788999997775 5555
Q ss_pred HHHH---HHHHhCCCC
Q 028500 161 IVLC---YLVEYKHMA 173 (208)
Q Consensus 161 v~~a---yL~~~~~~s 173 (208)
.+.+ +.+...|.+
T Consensus 83 ~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 83 AAAARVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHcCCC
Confidence 4443 334444543
No 63
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=74.63 E-value=9.1 Score=27.42 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=20.2
Q ss_pred hhCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+..+.+|+|.|..|-.||..++ ++++..|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 4456899999975445776544 56666565
No 64
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=74.48 E-value=3.9 Score=25.01 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHh
Q 028500 160 TIVLCYLVEYKHMAPAAALEYVRCR 184 (208)
Q Consensus 160 ~v~~ayL~~~~~~s~~~A~~~vr~~ 184 (208)
.-+...||..+|+|.++|+.+++..
T Consensus 16 ~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 16 EQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 3456789999999999999999864
No 65
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=74.14 E-value=7.5 Score=29.37 Aligned_cols=29 Identities=10% Similarity=-0.176 Sum_probs=19.8
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+.+|++.|..|..||.. ++++++..|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCC
Confidence 3568999999998777776 3344444454
No 66
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=73.38 E-value=7.6 Score=27.41 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=15.5
Q ss_pred hCCCcEEEEcCCCCCchHHHH
Q 028500 142 CAGKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~ 162 (208)
..+.+|+|+|..|. ||...+
T Consensus 62 ~~~~~ivv~C~~G~-rs~~aa 81 (117)
T cd01522 62 GKDRPVLLLCRSGN-RSIAAA 81 (117)
T ss_pred CCCCeEEEEcCCCc-cHHHHH
Confidence 45689999999984 776654
No 67
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=70.89 E-value=8.8 Score=26.03 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=18.3
Q ss_pred CCCcEEEEcCCCCCchHHHHHHHHHHhCCCC
Q 028500 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
.+.+|+++|..| .||... +.+|.. .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHHH-cCCc
Confidence 468999999998 477554 333443 4543
No 68
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=69.57 E-value=21 Score=30.64 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCCCchHHHH
Q 028500 143 AGKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~ 162 (208)
.+.+|+|+|..|-.||+.++
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa 106 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ 106 (345)
T ss_pred CCCeEEEEECCCChHHHHHH
Confidence 56899999976556988764
No 69
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=69.00 E-value=3.3 Score=33.78 Aligned_cols=73 Identities=21% Similarity=0.234 Sum_probs=46.5
Q ss_pred ceEEcCCCC-CCChhHHHhCCCcEEEEecCCCccCCC---ccchhcCCcEEEEEeCCCCC-----CCCcHHHHHHHHHHH
Q 028500 67 FLLLGAVPF-PKDVPRLKQLGVGGVITLNEPYETLVP---SSLYHAHGIDHLVIPTRDYL-----FAPSFVDIRRAVDFI 137 (208)
Q Consensus 67 ~l~lG~~~~-~~~~~~L~~~gI~~Vi~l~~~~~~~~~---~~~~~~~gi~~~~ip~~D~~-----~~~~~~~~~~~~~~i 137 (208)
.+..|++-. ..-..++++++|+.|||.+.++-.... .+.++..|+.|+++--.... ..-..+.++++++.+
T Consensus 45 ~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 45 PVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred eEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHh
Confidence 577888844 445567789999999999987632111 34567789999888643321 011234566677666
Q ss_pred HH
Q 028500 138 HS 139 (208)
Q Consensus 138 ~~ 139 (208)
.+
T Consensus 125 ~~ 126 (248)
T PRK08057 125 AP 126 (248)
T ss_pred hc
Confidence 44
No 70
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=68.84 E-value=9.4 Score=27.96 Aligned_cols=73 Identities=22% Similarity=0.138 Sum_probs=36.4
Q ss_pred hhHHHhCCCcEEEEecCCCccCCCccchhcCCc-EEEEEeCCCCCCC--CcHHHHHHHHHHHHHHhhCCCcEEEEcCCCC
Q 028500 79 VPRLKQLGVGGVITLNEPYETLVPSSLYHAHGI-DHLVIPTRDYLFA--PSFVDIRRAVDFIHSNSCAGKTTYVHCKAGR 155 (208)
Q Consensus 79 ~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi-~~~~ip~~D~~~~--~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 155 (208)
...|-+.+=...||+.++.|. +.-++ .-+++|..-...+ -....|.+-+.+..- ...+.|.|+|+.|.
T Consensus 30 vk~L~~~~~~~llDVRepeEf-------k~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp--~~d~eiIf~C~SG~ 100 (136)
T KOG1530|consen 30 VKNLLQHPDVVLLDVREPEEF-------KQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKP--PHDKEIIFGCASGV 100 (136)
T ss_pred HHHHhcCCCEEEEeecCHHHh-------hccCCcceEeccccccccccccCCHHHHHHhcccCC--CCCCcEEEEeccCc
Confidence 344555555678888875442 12222 3456666332111 112233332222111 11358999999997
Q ss_pred CchHHH
Q 028500 156 GRSTTI 161 (208)
Q Consensus 156 ~RS~~v 161 (208)
||...
T Consensus 101 -Rs~~A 105 (136)
T KOG1530|consen 101 -RSLKA 105 (136)
T ss_pred -chhHH
Confidence 88653
No 71
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=68.45 E-value=15 Score=28.79 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHH
Q 028500 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLV 167 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~ 167 (208)
.+.+.++++.+.+.+.++++|++. |.|+|++++.-+-+
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 366888999999999999999984 88889887754443
No 72
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=67.57 E-value=3.1 Score=28.83 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=9.0
Q ss_pred CcEEEEcCCC
Q 028500 145 KTTYVHCKAG 154 (208)
Q Consensus 145 ~~VlVHC~~G 154 (208)
.+|||||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 6899999887
No 73
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=67.11 E-value=3 Score=34.03 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=51.9
Q ss_pred ceEEcCC-CCCCChhHHHhCCCcEEEEecCCCccCC---CccchhcCCcEEEEEeCCCCCC-----CCcHHHHHHHHHHH
Q 028500 67 FLLLGAV-PFPKDVPRLKQLGVGGVITLNEPYETLV---PSSLYHAHGIDHLVIPTRDYLF-----APSFVDIRRAVDFI 137 (208)
Q Consensus 67 ~l~lG~~-~~~~~~~~L~~~gI~~Vi~l~~~~~~~~---~~~~~~~~gi~~~~ip~~D~~~-----~~~~~~~~~~~~~i 137 (208)
.+..|++ ....-..++++.||+.|||.+.++-... -.+.++..|+.|+++--..... .-..+.++++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 5788888 4445557788899999999998763211 1345677899998886543321 12235567777766
Q ss_pred HHHhhCCCcEEE
Q 028500 138 HSNSCAGKTTYV 149 (208)
Q Consensus 138 ~~~~~~~~~VlV 149 (208)
.+. .+++|++
T Consensus 126 ~~~--~~~~ifl 135 (249)
T PF02571_consen 126 KEL--GGGRIFL 135 (249)
T ss_pred hhc--CCCCEEE
Confidence 442 2256665
No 74
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=67.07 E-value=12 Score=30.94 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.4
Q ss_pred cEEEEcCCCCCchHHHH
Q 028500 146 TTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v~ 162 (208)
.|-|=|..|.+||.+++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 48899999999999987
No 75
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=67.01 E-value=12 Score=31.09 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=15.6
Q ss_pred cEEEEcCCCCCchHHHH
Q 028500 146 TTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v~ 162 (208)
.|-|=|..|.+||.+++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 58899999999999987
No 76
>PRK09875 putative hydrolase; Provisional
Probab=66.81 E-value=42 Score=28.03 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.1
Q ss_pred ChhHHHhCCCcEEEEecCC
Q 028500 78 DVPRLKQLGVGGVITLNEP 96 (208)
Q Consensus 78 ~~~~L~~~gI~~Vi~l~~~ 96 (208)
.+..+++.|+++||+++..
T Consensus 39 el~~~~~~Gg~tiVd~T~~ 57 (292)
T PRK09875 39 EMNDLMTRGVRNVIEMTNR 57 (292)
T ss_pred HHHHHHHhCCCeEEecCCC
Confidence 3456788999999999854
No 77
>smart00400 ZnF_CHCC zinc finger.
Probab=66.47 E-value=7.9 Score=23.49 Aligned_cols=32 Identities=19% Similarity=0.580 Sum_probs=22.9
Q ss_pred EEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHH
Q 028500 148 YVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYV 181 (208)
Q Consensus 148 lVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~v 181 (208)
..||.+ -|+.|-+ +-++|+..|++..+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 478874 3555654 5556777899999999875
No 78
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=65.37 E-value=11 Score=25.09 Aligned_cols=28 Identities=11% Similarity=-0.096 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 144 ~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+.+|+|+|..|...++..++..|. ..|.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~-~~G~ 77 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLS-ELGY 77 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHH-HcCc
Confidence 579999999986333444444444 3443
No 79
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=63.93 E-value=10 Score=31.20 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=28.1
Q ss_pred cchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcC
Q 028500 104 SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCK 152 (208)
Q Consensus 104 ~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~ 152 (208)
.+++..|++|+ -|+..++ +++.++.+....+..+||+||..
T Consensus 229 ~lFe~LG~~Y~-GPiDGHd-------l~~Li~~l~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYI-GPIDGHD-------LEELIEVLENAKDIDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEE-EEEETT--------HHHHHHHHHHHCCSSSEEEEEEE
T ss_pred HHHHHcCCeEE-eccCCCC-------HHHHHHHHHHHhcCCCCEEEEEe
Confidence 67888999997 4665553 45555666666666899999963
No 80
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=63.81 E-value=9.1 Score=25.67 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 144 ~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+.+|+++|..|. ||... +.+| ...|.
T Consensus 56 ~~~iv~~c~~G~-rs~~a-a~~L-~~~G~ 81 (95)
T cd01534 56 GARIVLADDDGV-RADMT-ASWL-AQMGW 81 (95)
T ss_pred CCeEEEECCCCC-hHHHH-HHHH-HHcCC
Confidence 578999999986 77543 3334 44554
No 81
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=63.60 E-value=25 Score=29.66 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=13.1
Q ss_pred CCcEEEEcCCCCCchHHHH
Q 028500 144 GKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 144 ~~~VlVHC~~G~~RS~~v~ 162 (208)
+..|+|+|..|-.||..++
T Consensus 74 ~~~vvvyC~~gG~RS~~aa 92 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLA 92 (311)
T ss_pred CCcEEEEECCCChHHHHHH
Confidence 3459999965445887654
No 82
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=62.96 E-value=16 Score=28.82 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHH
Q 028500 128 VDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVE 168 (208)
Q Consensus 128 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~ 168 (208)
+.|.++++.|.++ .|+|+| .|+||||.++=++-|.
T Consensus 26 ~~~~~a~~~i~~~---~gkv~V---~G~GkSG~Igkk~Aa~ 60 (202)
T COG0794 26 EDFVRAVELILEC---KGKVFV---TGVGKSGLIGKKFAAR 60 (202)
T ss_pred HHHHHHHHHHHhc---CCcEEE---EcCChhHHHHHHHHHH
Confidence 4566666666654 478887 5999999988666554
No 83
>PRK05569 flavodoxin; Provisional
Probab=62.73 E-value=55 Score=23.53 Aligned_cols=92 Identities=7% Similarity=-0.096 Sum_probs=52.5
Q ss_pred cCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCC-chHHHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 028500 108 AHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRG-RSTTIVLCYLVEYKHMAPAAALEYVRCRRP 186 (208)
Q Consensus 108 ~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~-RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp 186 (208)
....-.+-.|+......+ ...+..+++.+.....+|+++.+-+..|.+ ..+.-.+.-.+...|+..-..+ .-
T Consensus 48 ~~d~iilgsPty~~~~~~-~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~------~~ 120 (141)
T PRK05569 48 EADAVAFGSPSMDNNNIE-QEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDL------AV 120 (141)
T ss_pred hCCEEEEECCCcCCCcCC-hHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeE------EE
Confidence 344556667775543222 234555555554333357999999998865 2322223334445565543321 11
Q ss_pred CCccCHHHHHHHHHHHHhhc
Q 028500 187 RVLLAPSQWKLISPSQSRSI 206 (208)
Q Consensus 187 ~~~~~~~~~~~L~~~~~~l~ 206 (208)
.-.|+....+.+.+|.+++.
T Consensus 121 ~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 121 NESPNKEELNSAKELGKKLA 140 (141)
T ss_pred ccCCCHHHHHHHHHHHHHHh
Confidence 23488889999999888764
No 84
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=62.53 E-value=4.5 Score=33.13 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=47.5
Q ss_pred eEEcCCCCCCChhHHHhCCCcEEEEecCCCccCC---CccchhcCCcEEEEEeCCC---CCCCCcHHHHHHHHHHHHHHh
Q 028500 68 LLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLV---PSSLYHAHGIDHLVIPTRD---YLFAPSFVDIRRAVDFIHSNS 141 (208)
Q Consensus 68 l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~---~~~~~~~~gi~~~~ip~~D---~~~~~~~~~~~~~~~~i~~~~ 141 (208)
+..|.+....-...+++.+|+.|||.+.++-... -...++..|+.|+++--.. .+.....+.+.++++.+.+..
T Consensus 47 v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~~ 126 (256)
T TIGR00715 47 VHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQPY 126 (256)
T ss_pred EEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhcc
Confidence 5556554444336778899999999998753211 1345677899999984321 111122345667776554421
Q ss_pred hCCCcEEE
Q 028500 142 CAGKTTYV 149 (208)
Q Consensus 142 ~~~~~VlV 149 (208)
..+++|+.
T Consensus 127 ~~~~~i~l 134 (256)
T TIGR00715 127 LRGKRVFL 134 (256)
T ss_pred ccCCcEEE
Confidence 12356665
No 85
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=61.89 E-value=17 Score=30.31 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHh----hCCC---cEEEEcCCCCCchHHHHH
Q 028500 128 VDIRRAVDFIHSNS----CAGK---TTYVHCKAGRGRSTTIVL 163 (208)
Q Consensus 128 ~~~~~~~~~i~~~~----~~~~---~VlVHC~~G~~RS~~v~~ 163 (208)
+.++.+.+++...+ ++|+ .|-|=|..|.+||.+++=
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 34444444444333 3343 488999999999998873
No 86
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=60.53 E-value=18 Score=27.74 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHH
Q 028500 126 SFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTT 160 (208)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 160 (208)
..+.+.++.+.|-+++.+|++|++ | |.|+|++
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~-c--GNGgSaa 54 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLA-C--GNGGSAA 54 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEE-E--CCCcchh
Confidence 356788888999999999999987 4 5556655
No 87
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=60.40 E-value=14 Score=33.97 Aligned_cols=51 Identities=14% Similarity=0.305 Sum_probs=35.1
Q ss_pred CccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCC--CCCchHH
Q 028500 102 PSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKA--GRGRSTT 160 (208)
Q Consensus 102 ~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~--G~~RS~~ 160 (208)
|..+++..|++|+ -|+..++ +++.+..+.+..+.++||+||... |+|=..+
T Consensus 235 ~~~lFeelGf~Yi-GPiDGHn-------i~~Li~~Lk~~kd~~gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 235 PGTLFEELGFNYI-GPIDGHN-------LEELIPTLKNAKDLKGPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred chhhHHHhCCeeE-CCcCCCC-------HHHHHHHHHHHhcCCCCEEEEEEecCCCCCChh
Confidence 4457888999997 4665543 555666666666678999999964 5554444
No 88
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=60.04 E-value=15 Score=34.13 Aligned_cols=46 Identities=9% Similarity=0.327 Sum_probs=28.2
Q ss_pred cchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCc
Q 028500 104 SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGR 157 (208)
Q Consensus 104 ~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~R 157 (208)
..|+..|+.|+. |++.++ .+.+.++++ .....++|++|||..=+|+
T Consensus 232 ~~f~~~G~~~~~-~vDGhd----~~~l~~al~---~ak~~~~P~~i~~~T~KGk 277 (617)
T TIGR00204 232 TFFEELGFNYIG-PVDGHD----LLELIETLK---NAKKLKGPVFLHIQTKKGK 277 (617)
T ss_pred chHHHcCCcEEc-ccCCCC----HHHHHHHHH---HHhcCCCCEEEEEEecCCC
Confidence 347788998876 675443 334444443 4334467999999754443
No 89
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=59.28 E-value=19 Score=23.84 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=13.7
Q ss_pred hhCCCcEEEEcCCCCCchHH
Q 028500 141 SCAGKTTYVHCKAGRGRSTT 160 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS~~ 160 (208)
+..+.+|+|+|..|. ||..
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~ 71 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQ 71 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHH
Confidence 345789999999764 5544
No 90
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=59.01 E-value=18 Score=26.48 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCC
Q 028500 130 IRRAVDFIHSNSCAGKTTYVHCKA 153 (208)
Q Consensus 130 ~~~~~~~i~~~~~~~~~VlVHC~~ 153 (208)
..-++..++++.++|++|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 466778899999999999999964
No 91
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=58.58 E-value=8.5 Score=26.37 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCCchHHHH
Q 028500 145 KTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~ 162 (208)
++||+-|.+|++ |+.++
T Consensus 4 ~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV 20 (95)
T ss_pred cEEEEECCCchh-HHHHH
Confidence 689999999998 55544
No 92
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=58.07 E-value=17 Score=24.64 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=17.1
Q ss_pred CCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 144 ~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+.+|+|+|..|. ||..++. . +...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~-~-L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA-F-LVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH-H-HHHcCC
Confidence 578999999986 7755433 3 334454
No 93
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=57.58 E-value=16 Score=26.96 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcCCC
Q 028500 129 DIRRAVDFIHSNSCAGKTTYVHCKAG 154 (208)
Q Consensus 129 ~~~~~~~~i~~~~~~~~~VlVHC~~G 154 (208)
...-++..+.++..+|.+|+|+|..-
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45668888999999999999999654
No 94
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=56.97 E-value=12 Score=27.87 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhCCCcEEEEcCC
Q 028500 132 RAVDFIHSNSCAGKTTYVHCKA 153 (208)
Q Consensus 132 ~~~~~i~~~~~~~~~VlVHC~~ 153 (208)
-++.++.++...|.+|+|+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 7889999999999999999954
No 95
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=56.54 E-value=14 Score=26.12 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=18.4
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+++|+|+|..|. ||...+- +| ...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa~-~L-~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAVR-KL-KELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHHH-HH-HHcCC
Confidence 44689999999995 8764333 33 34455
No 96
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=56.24 E-value=14 Score=26.32 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=16.6
Q ss_pred hCCCcEEEEcC-CCCCchHHHHHHHHHH
Q 028500 142 CAGKTTYVHCK-AGRGRSTTIVLCYLVE 168 (208)
Q Consensus 142 ~~~~~VlVHC~-~G~~RS~~v~~ayL~~ 168 (208)
..+.+|+|||. +| .||+.++ .+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~aa-~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPRMA-RHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHHHH-HHHHH
Confidence 45689999997 66 4776544 34543
No 97
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=56.19 E-value=11 Score=25.27 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=18.2
Q ss_pred hhCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+..+.+|+|+|..| .||.. ++ ..+...|.
T Consensus 58 ~~~~~~ivv~c~~g-~~s~~-~~-~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASG-WRSAL-AG-KTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCC-CcHHH-HH-HHHHHcCh
Confidence 34568999999887 47643 33 33444453
No 98
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=56.03 E-value=15 Score=24.67 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=16.0
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHH
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLV 167 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~ 167 (208)
..+++|+++|..|. ||.. ++..|.
T Consensus 52 ~~~~~iv~~c~~g~-~s~~-~~~~L~ 75 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQ-NAERLA 75 (99)
T ss_pred CCCCcEEEEeCCCc-hHHH-HHHHHH
Confidence 45689999999985 6554 333343
No 99
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=55.84 E-value=15 Score=30.10 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=20.6
Q ss_pred CCCCCchHHHHHHHHHHhCCCCHHHHHHH
Q 028500 152 KAGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (208)
Q Consensus 152 ~~G~~RS~~v~~ayL~~~~~~s~~~A~~~ 180 (208)
--|+||||+.+.+-++ .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 4699999998877665 48888887544
No 100
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=55.84 E-value=31 Score=23.85 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCCCchHHHHHH
Q 028500 143 AGKTTYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~~a 164 (208)
.+.+|+|||..+-.|+...+..
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~ 82 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARK 82 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHH
Confidence 3579999998544577665433
No 101
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=54.67 E-value=27 Score=24.28 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=13.9
Q ss_pred CCCcEEEEcCCCCCchHHHH
Q 028500 143 AGKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~ 162 (208)
.+.+|+++|..| .||...+
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa 77 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAK 77 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHH
Confidence 347899999988 3665554
No 102
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=53.23 E-value=16 Score=25.11 Aligned_cols=35 Identities=11% Similarity=0.364 Sum_probs=23.4
Q ss_pred EEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 028500 148 YVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCR 184 (208)
Q Consensus 148 lVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~ 184 (208)
..||.+ -|.+|-+ +.++|...+++..+|++.+.+.
T Consensus 54 ~~~Cf~-Cg~~Gd~-i~~v~~~~~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 54 RFKCFG-CGKGGDV-IDFVMKYEGCSFKEAVKWLAEE 88 (97)
T ss_dssp EEEETT-T--EE-H-HHHHHHHHT--HHHHHHHHHHH
T ss_pred eEEECC-CCCCCcH-HhHHHHHhCCCHHHHHHHHHHH
Confidence 689984 5677765 5556888899999999998765
No 103
>PRK13938 phosphoheptose isomerase; Provisional
Probab=53.20 E-value=43 Score=26.22 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHH
Q 028500 125 PSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVE 168 (208)
Q Consensus 125 ~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~ 168 (208)
...+.+.++.+.+.+.+.+|++|++. |.|+|+.++.-.-.+
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAE 66 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHH
Confidence 45567888888888899999999884 777888877655443
No 104
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=52.95 E-value=15 Score=24.53 Aligned_cols=28 Identities=7% Similarity=-0.161 Sum_probs=18.3
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+.+|+|+|..| +||+.+ +.+| +..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~-~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA-AQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH-HHHH-HHcCC
Confidence 4568999999877 477554 3444 34554
No 105
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=52.72 E-value=31 Score=23.92 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCCchHHHH
Q 028500 144 GKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 144 ~~~VlVHC~~G~~RS~~v~ 162 (208)
..+|++||..|-.||...+
T Consensus 66 ~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCEEEEECCCCCcccHHHH
Confidence 4689999998656776543
No 106
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=52.53 E-value=16 Score=24.38 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=13.5
Q ss_pred CcEEEEcCCCCCchHHHH
Q 028500 145 KTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~ 162 (208)
++|++.|.+|+|=|..++
T Consensus 1 ~kilvvCg~G~gtS~ml~ 18 (87)
T cd05567 1 KKIVFACDAGMGSSAMGA 18 (87)
T ss_pred CEEEEECCCCccHHHHHH
Confidence 469999999998654433
No 107
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=50.73 E-value=19 Score=29.89 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=19.0
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHH
Q 028500 153 AGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (208)
Q Consensus 153 ~G~~RS~~v~~ayL~~~~~~s~~~A~~~ 180 (208)
-|+||||+-..+-++ .|++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999987766555 48888877543
No 108
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=50.25 E-value=11 Score=31.08 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=17.5
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+++|+++|..|. ||+. ++.+| +..|.
T Consensus 229 ~~~~~ii~yC~~G~-~A~~-~~~~l-~~~G~ 256 (281)
T PRK11493 229 SFDRPIIASCGSGV-TAAV-VVLAL-ATLDV 256 (281)
T ss_pred CCCCCEEEECCcHH-HHHH-HHHHH-HHcCC
Confidence 44679999999986 5544 33333 34454
No 109
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=50.19 E-value=20 Score=29.39 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=18.8
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHH
Q 028500 153 AGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (208)
Q Consensus 153 ~G~~RS~~v~~ayL~~~~~~s~~~A~~~ 180 (208)
-|+||||+-..+-+. .|++.++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999987766555 48887777543
No 110
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=49.94 E-value=25 Score=26.46 Aligned_cols=26 Identities=4% Similarity=0.011 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcCCC
Q 028500 129 DIRRAVDFIHSNSCAGKTTYVHCKAG 154 (208)
Q Consensus 129 ~~~~~~~~i~~~~~~~~~VlVHC~~G 154 (208)
.+.-++.++.++..+|.+|+|+|...
T Consensus 14 ~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 14 LLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 45667888899999999999999654
No 111
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=49.11 E-value=22 Score=29.39 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=19.1
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHH
Q 028500 153 AGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (208)
Q Consensus 153 ~G~~RS~~v~~ayL~~~~~~s~~~A~~~ 180 (208)
-|.||||+-..+-+. .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999987766555 48888877543
No 112
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=49.11 E-value=29 Score=28.48 Aligned_cols=56 Identities=5% Similarity=-0.092 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHH------HHhCCCCHHHHHHHHHH
Q 028500 128 VDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYL------VEYKHMAPAAALEYVRC 183 (208)
Q Consensus 128 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL------~~~~~~s~~~A~~~vr~ 183 (208)
.+..-+..+|.-+.+.+.||.|||+.-....-.+.--+. +..+.-|.+.|.+++..
T Consensus 109 ~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsGs~e~a~~~~d~ 170 (256)
T COG0084 109 RQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSGSAEEARKLLDL 170 (256)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHc
Confidence 355556667777777788999998765444433332221 11123356666666643
No 113
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=48.83 E-value=30 Score=23.37 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=17.6
Q ss_pred CCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
.+.+|+|+|..|. ||..+ + +++...|.
T Consensus 65 ~~~~ivv~c~~g~-~s~~~-~-~~l~~~G~ 91 (106)
T cd01519 65 KDKELIFYCKAGV-RSKAA-A-ELARSLGY 91 (106)
T ss_pred CCCeEEEECCCcH-HHHHH-H-HHHHHcCC
Confidence 4679999999986 66443 3 33445554
No 114
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=48.80 E-value=20 Score=24.71 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCCCchHHHH
Q 028500 143 AGKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~ 162 (208)
.+.+|+|+|..|. ||...+
T Consensus 57 ~~~~vvlyC~~G~-rS~~aa 75 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMAK 75 (101)
T ss_pred CCCeEEEEeCCCH-HHHHHH
Confidence 3578999999995 776553
No 115
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=48.70 E-value=34 Score=22.16 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=16.3
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+.+|+|+|..|. |+.. + ++.+...|.
T Consensus 54 ~~~~~iv~~c~~g~-~a~~-~-~~~l~~~G~ 81 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSAK-A-AWLLRELGF 81 (100)
T ss_pred CCCCeEEEEeCCCc-HHHH-H-HHHHHHcCC
Confidence 34689999996654 6533 2 333334454
No 116
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=48.40 E-value=37 Score=27.67 Aligned_cols=57 Identities=7% Similarity=-0.090 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHH------HHHhCCCCHHHHHHHHHH
Q 028500 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCY------LVEYKHMAPAAALEYVRC 183 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay------L~~~~~~s~~~A~~~vr~ 183 (208)
..+..-+..+++-+.+.+.||.|||....+...-+.-.+ +++.+.-+++.|-.+++.
T Consensus 110 ~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 110 ERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 345555556666667778999999986443333332222 111223367777777774
No 117
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=48.33 E-value=28 Score=23.99 Aligned_cols=30 Identities=13% Similarity=-0.047 Sum_probs=18.2
Q ss_pred hhCCCcEEEEcCCCCC-chHHHHHHHHHHhCCC
Q 028500 141 SCAGKTTYVHCKAGRG-RSTTIVLCYLVEYKHM 172 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~-RS~~v~~ayL~~~~~~ 172 (208)
+..+.+|+|+|..|.. ||..+ +.. +...|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~-a~~-l~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKA-ALK-LAELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHH-HHH-HHHcCC
Confidence 3457899999998863 44443 333 334454
No 118
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=47.75 E-value=46 Score=26.49 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028500 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRC 183 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~ 183 (208)
-||+|.|||.. .+...+++-++|....|+-++++.+++.
T Consensus 184 lNGriWV~ae~--~~~t~~i~~~l~~~e~~td~~q~~~~k~ 222 (230)
T KOG1004|consen 184 LNGRIWVKAET--LSDTLIIANILMNCEFMTDTQQRIMVKQ 222 (230)
T ss_pred cCceEEEeccC--cchHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 37999999987 3566777888999999998888866654
No 119
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=46.76 E-value=39 Score=24.56 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHH
Q 028500 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 162 (208)
.+.+.++.+.+.+.+.+|++|++ | |.|-|++++
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~-~--G~G~S~~~a 50 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFV-C--GNGHSAAIA 50 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEE-E--ESTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEE-E--cCchhhhHH
Confidence 46788999999999999888887 4 344555544
No 120
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=44.26 E-value=37 Score=32.03 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=30.1
Q ss_pred cchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCC--CcEEEEcCCCCCc
Q 028500 104 SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAG--KTTYVHCKAGRGR 157 (208)
Q Consensus 104 ~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~--~~VlVHC~~G~~R 157 (208)
.++++.|++|+ -|++.++ +++.+..+.+..+.+ +||+||-..-+|+
T Consensus 320 ~lFe~lG~~Y~-GpvDGHd-------i~~Li~~l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 320 TLFEELGLYYI-GPVDGHN-------IEDLVCVLREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CcHHHcCCeEE-CccCCCC-------HHHHHHHHHHHHcCCCCCCEEEEEEecCCC
Confidence 57888999987 4665553 334444444444443 8999999776665
No 121
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=43.73 E-value=74 Score=21.63 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=17.6
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+.+++|+|..|. ||... +.. ++..|.
T Consensus 56 ~~~~~ivv~c~~g~-~s~~a-~~~-L~~~G~ 83 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQGA-AQY-LLQQGF 83 (108)
T ss_pred CCCCCEEEEeCCCC-CHHHH-HHH-HHHCCc
Confidence 45689999999986 66443 333 334454
No 122
>PRK15043 transcriptional regulator MirA; Provisional
Probab=43.50 E-value=50 Score=26.91 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCC------------CCccCHHHHHHHHHHHHhh
Q 028500 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRP------------RVLLAPSQWKLISPSQSRS 205 (208)
Q Consensus 144 ~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp------------~~~~~~~~~~~L~~~~~~l 205 (208)
|+++|+-|..|-.++.....|++....|+..+--=.-+-.-|| ...+++.|.++|..|...-
T Consensus 162 ~~~~Ll~~~~~~~~~~lwl~a~~l~~~g~~v~vl~~~~~~~~pelf~~~~~~~~~~~~~t~~q~~~~~~w~~~g 235 (243)
T PRK15043 162 GKDALVVGWNIHDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQG 235 (243)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHhcCCceEEEeCCcccccChhhcCCCeEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 6789999999999999988888887777642211011122222 3346999999999998653
No 123
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=42.42 E-value=69 Score=27.72 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=11.5
Q ss_pred hhCCCcEEEEcCCCC
Q 028500 141 SCAGKTTYVHCKAGR 155 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~ 155 (208)
+..|..||.||.+|.
T Consensus 164 I~dg~~ILThcnsg~ 178 (363)
T PRK05772 164 LNDGDTVLTQCNAGG 178 (363)
T ss_pred cCCCCEEEEecCCcc
Confidence 345778999998873
No 124
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=42.38 E-value=64 Score=23.18 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHH
Q 028500 128 VDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTT 160 (208)
Q Consensus 128 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~ 160 (208)
..+.++.+.+.+....+.||+|....|.|++-.
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH
Confidence 356677777888888889999999999999964
No 125
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=40.81 E-value=2e+02 Score=24.63 Aligned_cols=33 Identities=15% Similarity=0.201 Sum_probs=21.1
Q ss_pred ccCceEEcC--CCCCCChhHH----HhCCCcEEEEecCC
Q 028500 64 VDQFLLLGA--VPFPKDVPRL----KQLGVGGVITLNEP 96 (208)
Q Consensus 64 I~~~l~lG~--~~~~~~~~~L----~~~gI~~Vi~l~~~ 96 (208)
|+.++.++. .+...++... ..-||++|++....
T Consensus 17 iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p~~ 55 (374)
T cd01317 17 VDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNT 55 (374)
T ss_pred EeeccccCCCCccccchHHHHHHHHHhCCCcEEEECCCC
Confidence 777777655 3334454333 45789999999754
No 126
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.52 E-value=42 Score=23.19 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCC
Q 028500 130 IRRAVDFIHSNSCAGKTTYVHCKAGR 155 (208)
Q Consensus 130 ~~~~~~~i~~~~~~~~~VlVHC~~G~ 155 (208)
-.++++.|.+.....+||++|=..|.
T Consensus 10 T~aAl~Li~~l~~~hgpvmFHQSGGC 35 (116)
T COG3564 10 TPAALDLIAELQAEHGPVMFHQSGGC 35 (116)
T ss_pred CHHHHHHHHHHHHhcCCEEEeccCCc
Confidence 35788889988888899999966664
No 127
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=40.11 E-value=26 Score=30.36 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 145 KTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
.+|+|||..|. ||... +.+|.. .|.
T Consensus 333 ~~Ivv~C~sG~-RS~~A-a~~L~~-~G~ 357 (370)
T PRK05600 333 DNVVVYCASGI-RSADF-IEKYSH-LGH 357 (370)
T ss_pred CcEEEECCCCh-hHHHH-HHHHHH-cCC
Confidence 48999999995 88654 444543 454
No 128
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=39.98 E-value=34 Score=26.82 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=19.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHh
Q 028500 163 LCYLVEYKHMAPAAALEYVRCR 184 (208)
Q Consensus 163 ~ayL~~~~~~s~~~A~~~vr~~ 184 (208)
=+.||+.+|+|-++|++++|..
T Consensus 151 KglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 151 KGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 3568999999999999999863
No 129
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=39.81 E-value=27 Score=24.36 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=10.3
Q ss_pred CcEEEEcCCCCC
Q 028500 145 KTTYVHCKAGRG 156 (208)
Q Consensus 145 ~~VlVHC~~G~~ 156 (208)
++||+-|.+|.+
T Consensus 2 kkILlvCg~G~S 13 (104)
T PRK09590 2 KKALIICAAGMS 13 (104)
T ss_pred cEEEEECCCchH
Confidence 469999999994
No 130
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=39.71 E-value=98 Score=27.02 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=40.2
Q ss_pred chhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 028500 105 LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCR 184 (208)
Q Consensus 105 ~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~ 184 (208)
..++.|++|-.+|+.+.+ ....+.+.+++. .+-+-|+|.=..|.+.-.++.+. ...++++.+|+.
T Consensus 123 SL~e~Gi~Y~~v~L~~dg-~~D~~~i~~~~~------~~tk~v~IQRSrGYs~R~sl~i~--------~I~~~i~~vk~~ 187 (403)
T PF06838_consen 123 SLKEFGIKYREVPLTEDG-TIDWEAIKKALK------PNTKMVLIQRSRGYSWRPSLTIE--------EIKEIIKFVKEI 187 (403)
T ss_dssp STGGGT-EEEE--B-TTS-SB-HHHHHHHHH------TTEEEEEEE-S-TTSSS----HH--------HHHHHHHHHHHH
T ss_pred ChHHhCceeEEEeecCCC-CcCHHHHHHhhc------cCceEEEEecCCCCCCCCCCCHH--------HHHHHHHHHHhh
Confidence 346789999999998865 454555554443 22367899988888755444433 456789999999
Q ss_pred CCCCc
Q 028500 185 RPRVL 189 (208)
Q Consensus 185 Rp~~~ 189 (208)
+|.++
T Consensus 188 ~p~~i 192 (403)
T PF06838_consen 188 NPDVI 192 (403)
T ss_dssp -TTSE
T ss_pred CCCeE
Confidence 99765
No 131
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=39.38 E-value=62 Score=27.58 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=25.5
Q ss_pred cCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028500 151 CKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRC 183 (208)
Q Consensus 151 C~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~ 183 (208)
++-|.+|... =++.+++.+.||-++|++.|++
T Consensus 283 ~KfG~~~~~~-~~s~~IR~G~itReeal~~v~~ 314 (343)
T TIGR03573 283 LKFGFGRATD-HASIDIRSGRITREEAIELVKE 314 (343)
T ss_pred hhcCCCcCch-HHHHHHHcCCCCHHHHHHHHHH
Confidence 4678887644 4556777889999999999999
No 132
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=38.45 E-value=57 Score=30.72 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=29.1
Q ss_pred cchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCC--CCCchHH
Q 028500 104 SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKA--GRGRSTT 160 (208)
Q Consensus 104 ~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~--G~~RS~~ 160 (208)
..|+..|++|+ -|++.++ .+.+.++++.+.+. ..++|++||+.. |+|=..+
T Consensus 276 ~~fe~~G~~y~-g~iDGHd----~~~L~~al~~~k~~-~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 276 TLFEELGLYYI-GPVDGHN----IDDLVTILREVKST-KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred chHHHcCCeEE-eeeCCCC----HHHHHHHHHHHHhc-CCCCCEEEEEEecCCCCCChh
Confidence 35778899886 3554443 33444444433321 115899999964 5554443
No 133
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=38.33 E-value=39 Score=27.44 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHhhCCCcEEEEcCCCC
Q 028500 126 SFVDIRRAVDFIHSNSCAGKTTYVHCKAGR 155 (208)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~ 155 (208)
..+.++++++++.+... ..-++.||.++.
T Consensus 124 tl~EI~~Av~~~~~~~~-~~l~llHC~s~Y 152 (241)
T PF03102_consen 124 TLEEIERAVEVLREAGN-EDLVLLHCVSSY 152 (241)
T ss_dssp -HHHHHHHHHHHHHHCT---EEEEEE-SSS
T ss_pred CHHHHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence 46788889998855433 367999999874
No 134
>PRK13936 phosphoheptose isomerase; Provisional
Probab=38.23 E-value=1e+02 Score=23.94 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHH
Q 028500 128 VDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 128 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~a 164 (208)
+.+.++++.+.+.+.++++|++. |.|.|+.++.-
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~---G~G~S~~~A~~ 60 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC---GNGGSAADAQH 60 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHHHH
Confidence 45678888888888899999885 77777766643
No 135
>PRK02947 hypothetical protein; Provisional
Probab=37.27 E-value=69 Score=25.89 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHH
Q 028500 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVL 163 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ 163 (208)
.+.++++++.|.+.+.++++|++. |.|-|+.++.
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA~ 56 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVF---GTGHSHILAE 56 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHHH
Confidence 467889999999999998999986 6666666654
No 136
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=36.15 E-value=84 Score=26.95 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=14.0
Q ss_pred hhCCCcEEEEcCCCCCch
Q 028500 141 SCAGKTTYVHCKAGRGRS 158 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS 158 (208)
+..|..||.||.+|..+|
T Consensus 145 I~~g~~ILThc~sg~lat 162 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLAC 162 (339)
T ss_pred ccCCCEEEEecCCccccc
Confidence 345778999999997664
No 137
>PRK07411 hypothetical protein; Validated
Probab=35.85 E-value=45 Score=29.04 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=18.8
Q ss_pred CCCcEEEEcCCCCCchHHHHHHHHHHhCCCC
Q 028500 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
.+++|+|+|..|. ||.. ++..| +..|.+
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~~L-~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALGIL-KEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHH-HHcCCC
Confidence 4689999999886 8855 34434 345653
No 138
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=35.74 E-value=44 Score=28.19 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=13.3
Q ss_pred hhCCCcEEEEcCCCCCchH
Q 028500 141 SCAGKTTYVHCKAGRGRST 159 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS~ 159 (208)
+..+++|+++|..|. |++
T Consensus 266 i~~~~~iv~yC~sG~-~A~ 283 (320)
T PLN02723 266 ISLDSPIVASCGTGV-TAC 283 (320)
T ss_pred CCCCCCEEEECCcHH-HHH
Confidence 345689999998875 443
No 139
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=35.31 E-value=1.9e+02 Score=23.24 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=51.4
Q ss_pred CChhHHHhCCCcEEEEecCCCccCCC-----ccchhcCCcEEEEEeCCCCCCCCcH-HHHHHHH----HHHHHHhhCCCc
Q 028500 77 KDVPRLKQLGVGGVITLNEPYETLVP-----SSLYHAHGIDHLVIPTRDYLFAPSF-VDIRRAV----DFIHSNSCAGKT 146 (208)
Q Consensus 77 ~~~~~L~~~gI~~Vi~l~~~~~~~~~-----~~~~~~~gi~~~~ip~~D~~~~~~~-~~~~~~~----~~i~~~~~~~~~ 146 (208)
...+..+++|-..|.--+.+++...| .+.......+|-+++....+...+. +.+.+++ +.|...++.|++
T Consensus 97 nK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~~d~ry~~~~~~~~p~~EsLkdt~~Rv~Pyw~~~I~p~l~~Gk~ 176 (230)
T COG0588 97 NKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVLPYWEDDIAPNLKSGKN 176 (230)
T ss_pred ChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccccccccccccccCCCccchHHHHHHHhhHHHHHHhhHHHhCCCe
Confidence 33444555665544433333332212 2233334567777777664433333 3344444 345666778888
Q ss_pred EEEEcCCCCC-chHHHHHHHHHHhCCCCHHHHHH
Q 028500 147 TYVHCKAGRG-RSTTIVLCYLVEYKHMAPAAALE 179 (208)
Q Consensus 147 VlVHC~~G~~-RS~~v~~ayL~~~~~~s~~~A~~ 179 (208)
|+| ++.|-| |+ .++...++|-++...
T Consensus 177 VlI-~AHGNSlRa------LiK~L~~iSd~dI~~ 203 (230)
T COG0588 177 VLI-VAHGNSLRA------LIKYLEGISDEDILD 203 (230)
T ss_pred EEE-EecchhHHH------HHHHHhCCCHHHhhh
Confidence 988 678876 43 234456888776543
No 140
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=35.11 E-value=1.3e+02 Score=26.56 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=60.8
Q ss_pred ccccCceEEcCCCCCCCh----hHH---HhCCCcEEEEecCCCccC-CCccchhcCCcEEEEEeCCCCC----CCCcHHH
Q 028500 62 DEVDQFLLLGAVPFPKDV----PRL---KQLGVGGVITLNEPYETL-VPSSLYHAHGIDHLVIPTRDYL----FAPSFVD 129 (208)
Q Consensus 62 ~~I~~~l~lG~~~~~~~~----~~L---~~~gI~~Vi~l~~~~~~~-~~~~~~~~~gi~~~~ip~~D~~----~~~~~~~ 129 (208)
.+|.-+ +|.-+...+. +.+ .++|-.+|.+|+...... ......+...+..=.+|+-+.. .....-.
T Consensus 60 tKVNaN--IGtS~~~~d~~~E~~K~~~A~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t 137 (420)
T PF01964_consen 60 TKVNAN--IGTSSDYSDIEEELEKLKIAEKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMT 137 (420)
T ss_dssp -EEEEE--E--------HHHHHHHHHHHHHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--
T ss_pred eEEEee--ecCCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCC
Confidence 445444 4555554442 222 469999999998754321 1122333444555555552110 0111112
Q ss_pred HHHHHHHHHHHhhCC-CcEEEEcCC----------------CCCchHHHHHHHHHHhCCCC-----HHHHHHHHH-----
Q 028500 130 IRRAVDFIHSNSCAG-KTTYVHCKA----------------GRGRSTTIVLCYLVEYKHMA-----PAAALEYVR----- 182 (208)
Q Consensus 130 ~~~~~~~i~~~~~~~-~~VlVHC~~----------------G~~RS~~v~~ayL~~~~~~s-----~~~A~~~vr----- 182 (208)
-+.+.+.|.++.++| .-+-|||.- =+||.|++.++|+++...-+ +++-++..|
T Consensus 138 ~d~~~~~ie~qa~~GVDfmtiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVt 217 (420)
T PF01964_consen 138 EDDFFDVIEKQAKDGVDFMTIHCGITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVT 217 (420)
T ss_dssp HHHHHHHHHHHHHHT--EEEE-TT--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-E
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCee
Confidence 345666677777665 468899951 25899999999999876654 344455554
Q ss_pred -----HhCCCCccCHHHHHHHHH
Q 028500 183 -----CRRPRVLLAPSQWKLISP 200 (208)
Q Consensus 183 -----~~Rp~~~~~~~~~~~L~~ 200 (208)
..||+......-..|+.+
T Consensus 218 LSLGDglRPG~i~Da~D~aQi~E 240 (420)
T PF01964_consen 218 LSLGDGLRPGCIADATDRAQIQE 240 (420)
T ss_dssp EEE--TT--SSGGGTT-HHHHHH
T ss_pred EecccccCCCCcCCCCcHHHHHH
Confidence 368877764444444443
No 141
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.99 E-value=97 Score=18.13 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhCCC--CHHHHHHHHHHhCCCCccCHHHHHHHHH
Q 028500 158 STTIVLCYLVEYKHM--APAAALEYVRCRRPRVLLAPSQWKLISP 200 (208)
Q Consensus 158 S~~v~~ayL~~~~~~--s~~~A~~~vr~~Rp~~~~~~~~~~~L~~ 200 (208)
+||+.+....+..|. +...+++.+ ++.+...++..++.+.+
T Consensus 3 ~GTlGiL~~Ak~~GlI~~~~~~l~~l--~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 3 TGTLGILLLAKRRGLISEVKPLLDRL--QQAGFRISPKLIEEILR 45 (48)
T ss_pred eehHHHHHHHHHcCChhhHHHHHHHH--HHcCcccCHHHHHHHHH
Confidence 367777777777777 466667766 34567778888776653
No 142
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=34.95 E-value=26 Score=23.11 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=12.4
Q ss_pred cEEEEcCCCCCchHHH
Q 028500 146 TTYVHCKAGRGRSTTI 161 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v 161 (208)
+|++-|.+|+|=|.++
T Consensus 1 kIlvvC~~Gi~TS~~~ 16 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMV 16 (90)
T ss_dssp EEEEEESSSSHHHHHH
T ss_pred CEEEECCChHHHHHHH
Confidence 5899999999765444
No 143
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=34.59 E-value=1.5e+02 Score=21.53 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=29.7
Q ss_pred EEEeCCCCCCCCcHHHHHHHHHHHHHH----hhCCCc-EEEEcCCCCCchHHHHHHHHHHhCC
Q 028500 114 LVIPTRDYLFAPSFVDIRRAVDFIHSN----SCAGKT-TYVHCKAGRGRSTTIVLCYLVEYKH 171 (208)
Q Consensus 114 ~~ip~~D~~~~~~~~~~~~~~~~i~~~----~~~~~~-VlVHC~~G~~RS~~v~~ayL~~~~~ 171 (208)
+.+|+.|.. +.+....+.++|.+. .++++. .+.-|-+|=-++.++.++|.+..+|
T Consensus 57 i~~~~~DI~---t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 57 IPLKFDDIL---SDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred eccCccccC---CHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 334555543 334444455555444 333442 2333556644777888888877666
No 144
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=34.19 E-value=22 Score=24.06 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.8
Q ss_pred CCCcccccCceEEcCCCCC
Q 028500 58 FRWWDEVDQFLLLGAVPFP 76 (208)
Q Consensus 58 ~~~~~~I~~~l~lG~~~~~ 76 (208)
..|+.+|.+++|+|+....
T Consensus 18 trwl~Ei~~GVyVg~~s~r 36 (86)
T PF09707_consen 18 TRWLLEIRPGVYVGNVSAR 36 (86)
T ss_pred hheeEecCCCcEEcCCCHH
Confidence 4688999999999976654
No 145
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=34.12 E-value=26 Score=28.72 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=43.7
Q ss_pred eEEcCCCCC-CChhHHHhCCCcEEEEecCCCccCCC---ccchhcCCcEEEEEeCCCCCC----CCcHHHHHHHHHHHHH
Q 028500 68 LLLGAVPFP-KDVPRLKQLGVGGVITLNEPYETLVP---SSLYHAHGIDHLVIPTRDYLF----APSFVDIRRAVDFIHS 139 (208)
Q Consensus 68 l~lG~~~~~-~~~~~L~~~gI~~Vi~l~~~~~~~~~---~~~~~~~gi~~~~ip~~D~~~----~~~~~~~~~~~~~i~~ 139 (208)
.-+|+.-.+ .-.++|++++|+.|||-+.++-.... -..++..|+.|+.+--+.... .-....+.+++..+.+
T Consensus 47 ~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~ 126 (257)
T COG2099 47 VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQ 126 (257)
T ss_pred eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhc
Confidence 334444333 44567889999999999987632111 245677899998886543321 1123556666655544
No 146
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=34.01 E-value=2.3e+02 Score=22.44 Aligned_cols=70 Identities=16% Similarity=0.113 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCC--CH-------HHHHHHHHHhCCC----CccCHHHHH
Q 028500 130 IRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM--AP-------AAALEYVRCRRPR----VLLAPSQWK 196 (208)
Q Consensus 130 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~--s~-------~~A~~~vr~~Rp~----~~~~~~~~~ 196 (208)
+..+.++|....++|.++.+....+ +||..-.+..|....|. ++ ..+..+++++.+. +.-+++..+
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~~~~~v~v~G~~~~~~ 94 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRFEGEKVYVIGVGELRE 94 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence 5567788888888888888876554 58888888888875553 33 3356777765442 222556666
Q ss_pred HHHH
Q 028500 197 LISP 200 (208)
Q Consensus 197 ~L~~ 200 (208)
.++.
T Consensus 95 ~l~~ 98 (236)
T TIGR01460 95 SLEG 98 (236)
T ss_pred HHHH
Confidence 6654
No 147
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=33.62 E-value=2.2e+02 Score=24.49 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=53.9
Q ss_pred hHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeC---CCCCCCC-------cHHHHHHHHHHHHHHhhCCCcEEE
Q 028500 80 PRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPT---RDYLFAP-------SFVDIRRAVDFIHSNSCAGKTTYV 149 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~---~D~~~~~-------~~~~~~~~~~~i~~~~~~~~~VlV 149 (208)
+.|+++||..+|.+..+.....-....+..++..+.+|- +|....+ ..+...++++-+.+..+..++++|
T Consensus 88 ~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~l~dtassh~r~~i 167 (347)
T COG0205 88 ENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTASSHERIFI 167 (347)
T ss_pred HHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHHHHHHHhCcCCEEE
Confidence 458999999999998765422112222333488888886 2221111 124445566666666667789999
Q ss_pred EcCCCCCchHHHHHHHH
Q 028500 150 HCKAGRGRSTTIVLCYL 166 (208)
Q Consensus 150 HC~~G~~RS~~v~~ayL 166 (208)
+=.+|++-+-....|=+
T Consensus 168 veVMGR~aG~lAl~agl 184 (347)
T COG0205 168 VEVMGRHAGWLALAAGL 184 (347)
T ss_pred EEecCcChhHHHHHHHH
Confidence 99999866654444433
No 148
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=33.61 E-value=45 Score=32.08 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCc
Q 028500 126 SFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVL 189 (208)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~ 189 (208)
..+.-.++...|.+++-+.||=||-|..|. -++....+...|+..+|.+|..+.
T Consensus 415 ~eD~~qe~~~li~~AL~~PGPDlVICDEGH----------rIKN~~A~iS~aLk~IrtrRRiVL 468 (1387)
T KOG1016|consen 415 SEDQRQEAYSLIRSALLEPGPDLVICDEGH----------RIKNITAEISMALKAIRTRRRIVL 468 (1387)
T ss_pred hhhhHHHHHHHHHHHhcCCCCCeEEecCCc----------eeccchHHHHHHHHHhhhceeEEE
Confidence 345567788899999999999999999997 244344466677888888886543
No 149
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=33.29 E-value=82 Score=24.40 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHH
Q 028500 126 SFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 162 (208)
..+.+.++++.|.+++.+|++|++. |.|.|+.++
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A 59 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDA 59 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 3478999999999999999999874 555666644
No 150
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=33.20 E-value=2.5e+02 Score=22.35 Aligned_cols=120 Identities=9% Similarity=0.023 Sum_probs=67.7
Q ss_pred hhHHHhCCCcEEEEecCCCccCCC-------ccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEc
Q 028500 79 VPRLKQLGVGGVITLNEPYETLVP-------SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHC 151 (208)
Q Consensus 79 ~~~L~~~gI~~Vi~l~~~~~~~~~-------~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC 151 (208)
++.+++.|+...+++..-.....+ -+...+.|...+.++.. ......+.+.+.+..+.+.... .++-+||
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt--~G~~~P~~v~~li~~l~~~~~~-~~~~~H~ 197 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT--VGLATPEEVAELVKALREALPD-VPLGLHT 197 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh--cCCcCHHHHHHHHHHHHHhCCC-CeEEEEe
Confidence 345688999999999543320011 12234567777665543 3355667788888888876654 7888888
Q ss_pred CCCCCchH--HHHHHHHH-------------HhCCCCHHHHHHHHHHhCCCCccCHHHHHHHHHH
Q 028500 152 KAGRGRST--TIVLCYLV-------------EYKHMAPAAALEYVRCRRPRVLLAPSQWKLISPS 201 (208)
Q Consensus 152 ~~G~~RS~--~v~~ayL~-------------~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~ 201 (208)
..-.|=+. ++++...= ..++.+.++.+..++.+-...-.+......+.++
T Consensus 198 Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~~~ 262 (265)
T cd03174 198 HNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGLGIDTGIDLEKLLEISRY 262 (265)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 76444333 33322110 0134567777777877643333444444444433
No 151
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=33.05 E-value=80 Score=29.34 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=14.8
Q ss_pred hhCCCcEEEEcCCCCCchHHH
Q 028500 141 SCAGKTTYVHCKAGRGRSTTI 161 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS~~v 161 (208)
+..+++|.++|..|. ||+.+
T Consensus 220 i~~~~~VVvYC~sG~-rAa~~ 239 (610)
T PRK09629 220 ITPDKEVITHCQTHH-RSGFT 239 (610)
T ss_pred CCCCCCEEEECCCCh-HHHHH
Confidence 345689999999986 66544
No 152
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=32.98 E-value=57 Score=22.03 Aligned_cols=27 Identities=4% Similarity=0.236 Sum_probs=21.3
Q ss_pred HHHHHHhhCCCcEEEEcCCCCCchHHH
Q 028500 135 DFIHSNSCAGKTTYVHCKAGRGRSTTI 161 (208)
Q Consensus 135 ~~i~~~~~~~~~VlVHC~~G~~RS~~v 161 (208)
+++..++..+++|+|+++.|..=.|++
T Consensus 5 ~~L~~~~~~~~~V~V~lr~~r~~~G~L 31 (87)
T cd01720 5 SLLTQAVKNNTQVLINCRNNKKLLGRV 31 (87)
T ss_pred HHHHHHHcCCCEEEEEEcCCCEEEEEE
Confidence 566777767899999999998766654
No 153
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=32.91 E-value=2.5e+02 Score=22.31 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=40.0
Q ss_pred hhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCC----CCCcHHHHHHHHHHHHHHhhCCCcEEEEcCC
Q 028500 79 VPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYL----FAPSFVDIRRAVDFIHSNSCAGKTTYVHCKA 153 (208)
Q Consensus 79 ~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~----~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 153 (208)
.+.|++.|+..|++-........+.......++.|+++--.... ..=+.+.+++.++.|.+...+++.|+|-...
T Consensus 135 ~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~fnN 213 (230)
T PF01904_consen 135 FELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFFNN 213 (230)
T ss_dssp HHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-S
T ss_pred HHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 56788999999988766521111111111136677766543322 0114578899999999988888877765543
No 154
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=32.81 E-value=67 Score=22.08 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=17.6
Q ss_pred CCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 143 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
.+.+|+|+|..|. ||..+ ++.+...|.
T Consensus 77 ~~~~iv~yc~~g~-~s~~~--~~~l~~~G~ 103 (118)
T cd01449 77 PDKPVIVYCGSGV-TACVL--LLALELLGY 103 (118)
T ss_pred CCCCEEEECCcHH-HHHHH--HHHHHHcCC
Confidence 4689999999874 66553 333444454
No 155
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=32.80 E-value=75 Score=29.28 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=25.9
Q ss_pred chhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCc
Q 028500 105 LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGR 157 (208)
Q Consensus 105 ~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~R 157 (208)
.++..|+.++. +++.++ ...+.++ +.++.+.++|++|||+.=+|+
T Consensus 202 ~~~a~G~~~~~-v~DG~D----~~~l~~a---~~~a~~~~gP~~i~~~T~kG~ 246 (581)
T PRK12315 202 LFKAMGLDYRY-VEDGND----IESLIEA---FKEVKDIDHPIVLHIHTLKGK 246 (581)
T ss_pred HHHhcCCeEEE-eeCCCC----HHHHHHH---HHHHHhCCCCEEEEEEeecCC
Confidence 46677888875 223322 3333333 344445578999999864443
No 156
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=32.30 E-value=1.5e+02 Score=24.77 Aligned_cols=46 Identities=22% Similarity=0.140 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHH---HHHHHHhCCCCHH
Q 028500 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIV---LCYLVEYKHMAPA 175 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~---~ayL~~~~~~s~~ 175 (208)
.+.+.++++.+.+.+.+|++|++- |.|=||.++ +.-+....|.++.
T Consensus 40 l~~I~~av~~~~~~l~~gGrl~~~---G~G~Sg~l~~~DA~e~~~t~g~~~~ 88 (291)
T TIGR00274 40 LPDIAAAVEQIVQAFQQGGRLIYI---GAGTSGRLGVLDASECPPTFGVSPE 88 (291)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEE---CCcHHHHHHHHHHHHhhhhcCCCHH
Confidence 456777888888888888877663 444455542 3334444555443
No 157
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=31.38 E-value=60 Score=26.85 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=16.0
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHH
Q 028500 153 AGRGRSTTIVLCYLVEYKHMAPAAALE 179 (208)
Q Consensus 153 ~G~~RS~~v~~ayL~~~~~~s~~~A~~ 179 (208)
-|.||||+-..+-+. .|.+.+.|.+
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aae 189 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAE 189 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHH
Confidence 589999975554333 3666666543
No 158
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=31.27 E-value=1.2e+02 Score=25.84 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=10.9
Q ss_pred hhCCC----cEEEEcCCC
Q 028500 141 SCAGK----TTYVHCKAG 154 (208)
Q Consensus 141 ~~~~~----~VlVHC~~G 154 (208)
+..|. .||.||.+|
T Consensus 140 I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred hcCCCCCCceEEeecCCc
Confidence 34566 799999987
No 159
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=31.22 E-value=72 Score=28.65 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=18.8
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHHHhCCC
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+++++++|..|. ||... +.+|. ..|.
T Consensus 447 ~~~~~iivyC~~G~-rS~~a-a~~L~-~~G~ 474 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MSRLQ-ALYLR-EQGF 474 (482)
T ss_pred CCCCeEEEECCCCH-HHHHH-HHHHH-HcCC
Confidence 45689999999996 76554 44444 3454
No 160
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=31.00 E-value=86 Score=21.72 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCCchHHHHHHHHHHhCCCC-HHHHHHHHH
Q 028500 145 KTTYVHCKAGRGRSTTIVLCYLVEYKHMA-PAAALEYVR 182 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~~ayL~~~~~~s-~~~A~~~vr 182 (208)
++|+=||..| .-++-||+.....+ -.+|+..-.
T Consensus 25 ~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las 58 (99)
T cd04445 25 KKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLAS 58 (99)
T ss_pred hccccceecc-----cHHHHHHHHhhcccchHHHHHHHH
Confidence 7899999887 45788999888774 778776543
No 161
>PHA02540 61 DNA primase; Provisional
Probab=30.75 E-value=1e+02 Score=26.36 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=28.7
Q ss_pred cEEEEcC-CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q 028500 146 TTYVHCK-AGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRR 185 (208)
Q Consensus 146 ~VlVHC~-~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~R 185 (208)
....||. .|.|.. ++.+||.+.++++.+|++.+....
T Consensus 53 ~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 53 GGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred ceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHh
Confidence 5789996 466554 567899999999999999765544
No 162
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=30.47 E-value=55 Score=22.52 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcC
Q 028500 130 IRRAVDFIHSNSCAGKTTYVHCK 152 (208)
Q Consensus 130 ~~~~~~~i~~~~~~~~~VlVHC~ 152 (208)
+.++.+.+..+...|-++.+||.
T Consensus 32 it~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 32 ITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHHHHHhCCCEEecCC
Confidence 56777778888888999999997
No 163
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=30.13 E-value=54 Score=27.31 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=22.7
Q ss_pred HHHhhCCCcEEEEcCCCCCchHHHHHHHHH
Q 028500 138 HSNSCAGKTTYVHCKAGRGRSTTIVLCYLV 167 (208)
Q Consensus 138 ~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~ 167 (208)
.+.+..++||++-|..|++-+...+++++.
T Consensus 230 ~~~l~~~~p~~~sC~~Gisa~~i~~al~r~ 259 (286)
T KOG1529|consen 230 QKGLKLSKPVIVSCGTGISASIIALALERS 259 (286)
T ss_pred hcCcccCCCEEEeeccchhHHHHHHHHHhc
Confidence 444555799999999999877666666654
No 164
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=29.91 E-value=1.8e+02 Score=22.41 Aligned_cols=32 Identities=34% Similarity=0.567 Sum_probs=20.0
Q ss_pred HHHHhhCCCcEEEEcC--CCCCchHHHHHHHHHHh
Q 028500 137 IHSNSCAGKTTYVHCK--AGRGRSTTIVLCYLVEY 169 (208)
Q Consensus 137 i~~~~~~~~~VlVHC~--~G~~RS~~v~~ayL~~~ 169 (208)
++...+.|+.|+||-- .|.++. -.++-||...
T Consensus 37 v~~~~~~gK~vfVHiDli~Gl~~D-~~~i~~L~~~ 70 (175)
T PF04309_consen 37 VKRLKAAGKKVFVHIDLIEGLSRD-EAGIEYLKEY 70 (175)
T ss_dssp HHHHHHTT-EEEEECCGEETB-SS-HHHHHHHHHT
T ss_pred HHHHHHcCCEEEEEehhcCCCCCC-HHHHHHHHHc
Confidence 3444557899999996 577776 4455666554
No 165
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=29.61 E-value=3.3e+02 Score=24.14 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhCC-CcEEEEcC----------------CCCCchHHHHHHHHHHhCCCC-----HHHHHHHHHH------
Q 028500 132 RAVDFIHSNSCAG-KTTYVHCK----------------AGRGRSTTIVLCYLVEYKHMA-----PAAALEYVRC------ 183 (208)
Q Consensus 132 ~~~~~i~~~~~~~-~~VlVHC~----------------~G~~RS~~v~~ayL~~~~~~s-----~~~A~~~vr~------ 183 (208)
.+.+.|.++.++| .-+-|||- .=+||-|++.++|+++...-+ ++.-++..|+
T Consensus 144 ~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 144 DLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLS 223 (431)
T ss_pred HHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeee
Confidence 3445566666665 46889994 125899999999999776553 3334444443
Q ss_pred ----hCCCCccCHHHHHHHHH
Q 028500 184 ----RRPRVLLAPSQWKLISP 200 (208)
Q Consensus 184 ----~Rp~~~~~~~~~~~L~~ 200 (208)
.||+......-..|+++
T Consensus 224 LGDglRPG~i~Da~D~aQi~E 244 (431)
T PRK13352 224 LGDGLRPGCIADATDRAQIQE 244 (431)
T ss_pred ccCCcCCCccccCCcHHHHHH
Confidence 68877665444444443
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=29.35 E-value=1.3e+02 Score=24.97 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHH
Q 028500 132 RAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYL 166 (208)
Q Consensus 132 ~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 166 (208)
+.++.|.+.+.+|+.+++.--.|.|.|.++.++.+
T Consensus 15 ~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 15 EFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 35555666667789999999999999977665443
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=29.35 E-value=1.3e+02 Score=24.97 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHH
Q 028500 132 RAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYL 166 (208)
Q Consensus 132 ~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 166 (208)
+.++.|.+.+.+|+.+++.--.|.|.|.++.++.+
T Consensus 15 ~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 15 EFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 35555666667789999999999999977665443
No 168
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.02 E-value=50 Score=22.85 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=13.2
Q ss_pred cEEEEcCCCCCchHHHHHHHH
Q 028500 146 TTYVHCKAGRGRSTTIVLCYL 166 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v~~ayL 166 (208)
+|++-|.+| .|.++++--+
T Consensus 2 ~Ill~C~~G--aSSs~la~km 20 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANAL 20 (99)
T ss_pred EEEEECCCC--CCHHHHHHHH
Confidence 489999777 6666665443
No 169
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=28.98 E-value=1.5e+02 Score=25.03 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=20.3
Q ss_pred hhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCHH
Q 028500 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPA 175 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~ 175 (208)
...|-||.+||..|. |.+.=++.+|.. .|++++
T Consensus 152 ~~TG~pI~~H~~~g~-~~~~e~~~il~e-~Gv~~~ 184 (308)
T PF02126_consen 152 KETGAPISTHTGRGT-RMGLEQLDILEE-EGVDPS 184 (308)
T ss_dssp HHHT-EEEEEESTTG-TCHHHHHHHHHH-TT--GG
T ss_pred HHhCCeEEEcCCCCC-cCHHHHHHHHHH-cCCChh
Confidence 345899999998875 466666766654 455543
No 170
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=28.88 E-value=78 Score=25.82 Aligned_cols=43 Identities=26% Similarity=0.181 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHH---HHHHHhCCC
Q 028500 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVL---CYLVEYKHM 172 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~---ayL~~~~~~ 172 (208)
.+.+.++++.+.+.+.+|++|++ | |.|-||.++. ..+...+|.
T Consensus 32 l~~I~~av~~~~~~l~~ggrl~~-~--GaGtSg~la~~da~e~~~tfg~ 77 (257)
T cd05007 32 LPQIARAVDAAAERLRAGGRLIY-V--GAGTSGRLGVLDASELPPTFGT 77 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEE-E--cCcHHHHHHHHHHHhccccccC
Confidence 35678888888888888888765 3 4455666553 444444555
No 171
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.70 E-value=56 Score=23.78 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=24.4
Q ss_pred CceEEcCCCCCCChhHHHhCCCcEEEEecC
Q 028500 66 QFLLLGAVPFPKDVPRLKQLGVGGVITLNE 95 (208)
Q Consensus 66 ~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~ 95 (208)
..+++|+.+...+.+.|+++||..++....
T Consensus 85 i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 85 ILVVVGGVIPPQDFDELKEMGVAEIFGPGT 114 (132)
T ss_pred CEEEEeCCCChHhHHHHHHCCCCEEECCCC
Confidence 348889877778889999999999886654
No 172
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=28.64 E-value=71 Score=20.87 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=13.5
Q ss_pred hhCCCcEEEEcCCCCCchHH
Q 028500 141 SCAGKTTYVHCKAGRGRSTT 160 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS~~ 160 (208)
+..+++|+++|..|. |+..
T Consensus 48 ~~~~~~vvl~c~~g~-~a~~ 66 (90)
T cd01524 48 LPKDKEIIVYCAVGL-RGYI 66 (90)
T ss_pred cCCCCcEEEEcCCCh-hHHH
Confidence 345689999999874 4443
No 173
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=28.37 E-value=67 Score=25.79 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhCC-CcEEEEcC-CCCCchHHHHHHHH
Q 028500 132 RAVDFIHSNSCAG-KTTYVHCK-AGRGRSTTIVLCYL 166 (208)
Q Consensus 132 ~~~~~i~~~~~~~-~~VlVHC~-~G~~RS~~v~~ayL 166 (208)
....++.-+.++| ++|+|||- -|+.=.+.-+..||
T Consensus 47 Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl 83 (223)
T PF06415_consen 47 HLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYL 83 (223)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHH
Confidence 3333444444455 56888885 47665554444444
No 174
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=28.19 E-value=91 Score=29.16 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=27.4
Q ss_pred ccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCc
Q 028500 103 SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGR 157 (208)
Q Consensus 103 ~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~R 157 (208)
...|++.|++|+. |++.+ ..+.+.++++.+.+. .++|++|||..=+|+
T Consensus 239 ~~~f~a~G~~~~~-~vdGh----d~~~l~~al~~ak~~--~~~P~~I~~~T~kGk 286 (641)
T PRK12571 239 GTLFEELGFTYVG-PIDGH----DMEALLSVLRAARAR--ADGPVLVHVVTEKGR 286 (641)
T ss_pred hhHHHHcCCEEEC-ccCCC----CHHHHHHHHHHHHhC--CCCCEEEEEEecCcc
Confidence 3567788888761 33332 244454554433321 368999999764443
No 175
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=27.95 E-value=1.1e+02 Score=25.67 Aligned_cols=46 Identities=22% Similarity=0.123 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCC-CCchHHHHHHHHHHhCCCC
Q 028500 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAG-RGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G-~~RS~~v~~ayL~~~~~~s 173 (208)
.+.+.++++.+.+.+++|++|++ |-+| -||-+..-+.-+...++++
T Consensus 41 ~~~I~~a~~~~~~~l~~ggrl~~-~GaG~Sg~la~~dA~e~~~tf~~~ 87 (296)
T PRK12570 41 LPQIAQAVDKIVAAFKKGGRLIY-MGAGTSGRLGVLDASECPPTFSVS 87 (296)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEE-ECCchhHHHHHHHHHhCcchhcCC
Confidence 35677788888888888888765 4333 2233333334344344443
No 176
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=27.94 E-value=64 Score=26.20 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCCCchHHHH--HHHHHHhCCCCHH
Q 028500 144 GKTTYVHCKAGRGRSTTIV--LCYLVEYKHMAPA 175 (208)
Q Consensus 144 ~~~VlVHC~~G~~RS~~v~--~ayL~~~~~~s~~ 175 (208)
+++++|-..+|-|-|.+++ ++||+...+.+++
T Consensus 13 ~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~ 46 (315)
T PF00580_consen 13 EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPE 46 (315)
T ss_dssp SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGG
T ss_pred CCCEEEEeCCCCCchHHHHHHHHHhhccccCChH
Confidence 5899999999999999887 5778877655533
No 177
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=27.93 E-value=52 Score=22.99 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=12.7
Q ss_pred CcEEEEcCCCCCchHH
Q 028500 145 KTTYVHCKAGRGRSTT 160 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~ 160 (208)
+++++-|.+|.|-|-+
T Consensus 2 k~IlLvC~aGmSTSlL 17 (102)
T COG1440 2 KKILLVCAAGMSTSLL 17 (102)
T ss_pred ceEEEEecCCCcHHHH
Confidence 4689999999986643
No 178
>PLN02790 transketolase
Probab=27.78 E-value=96 Score=29.08 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=27.8
Q ss_pred chhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhh-CCCcEEEEcCCCCCch
Q 028500 105 LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSC-AGKTTYVHCKAGRGRS 158 (208)
Q Consensus 105 ~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~-~~~~VlVHC~~G~~RS 158 (208)
.++..|++++.+.-.| ...+.+.+++ .++.. .++|++|||+.=+|+.
T Consensus 195 ~f~a~G~~~~~vdgg~----hd~~~l~~a~---~~a~~~~~~P~lI~~~T~kG~G 242 (654)
T PLN02790 195 RYEALGWHTIWVKNGN----TDYDEIRAAI---KEAKAVTDKPTLIKVTTTIGYG 242 (654)
T ss_pred HHHHcCCeEEEECCCC----CCHHHHHHHH---HHHHhcCCCeEEEEEEEeecCC
Confidence 5667888888752211 1234444444 44443 4789999998755543
No 179
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=27.11 E-value=92 Score=22.27 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.5
Q ss_pred CCCCchHHHHHHHHHHhCC
Q 028500 153 AGRGRSTTIVLCYLVEYKH 171 (208)
Q Consensus 153 ~G~~RS~~v~~ayL~~~~~ 171 (208)
.|++|+.+.+++||+....
T Consensus 23 lgi~R~vA~tlv~L~~~~E 41 (124)
T COG4738 23 LGIPRNVATTLVCLAKGDE 41 (124)
T ss_pred cCCCchHHHHHHHHhcCcc
Confidence 5889999999999986543
No 180
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=27.03 E-value=1.5e+02 Score=25.33 Aligned_cols=28 Identities=21% Similarity=0.520 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHhhCCCc--EEEEcCCCCC
Q 028500 126 SFVDIRRAVDFIHSNSCAGKT--TYVHCKAGRG 156 (208)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~~~~--VlVHC~~G~~ 156 (208)
+...+.++++++.+ +|.+ +|.||..+.-
T Consensus 158 ~~~ei~~av~~~r~---~g~~~i~LLhC~s~YP 187 (347)
T COG2089 158 TIEEIEEAVAILRE---NGNPDIALLHCTSAYP 187 (347)
T ss_pred cHHHHHHHHHHHHh---cCCCCeEEEEecCCCC
Confidence 45667777777765 4555 9999998764
No 181
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=25.95 E-value=56 Score=22.15 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCCchHHHHH
Q 028500 145 KTTYVHCKAGRGRSTTIVL 163 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~~ 163 (208)
.+|++-|.+|++=|..++.
T Consensus 3 ~kILvvCgsG~~TS~m~~~ 21 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAE 21 (94)
T ss_pred CeEEEECCCchhHHHHHHH
Confidence 3699999999976655443
No 182
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=25.83 E-value=2e+02 Score=21.06 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=16.1
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHHH
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLVE 168 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~~ 168 (208)
..+.+|+|+|..| ..+..++..|..
T Consensus 47 ~~~~~vVv~c~~g--~~a~~aa~~L~~ 71 (145)
T cd01535 47 PAAERYVLTCGSS--LLARFAAADLAA 71 (145)
T ss_pred CCCCCEEEEeCCC--hHHHHHHHHHHH
Confidence 3458999999986 334445555543
No 183
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=25.53 E-value=60 Score=22.99 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=24.5
Q ss_pred CceEEcCCCCCCChhHHHhCCCcEEEEecCC
Q 028500 66 QFLLLGAVPFPKDVPRLKQLGVGGVITLNEP 96 (208)
Q Consensus 66 ~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~ 96 (208)
..+++|+.....+.+.++++||+.++....+
T Consensus 82 i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 82 ILVVGGGIIPPEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEECCCCC
Confidence 3478888766777888999999999887654
No 184
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=25.48 E-value=2.4e+02 Score=23.76 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=26.8
Q ss_pred hhHHHhCCCcEEEEecCCCcc-----CCC-----ccchhcCCc-EEEEEeCCCC
Q 028500 79 VPRLKQLGVGGVITLNEPYET-----LVP-----SSLYHAHGI-DHLVIPTRDY 121 (208)
Q Consensus 79 ~~~L~~~gI~~Vi~l~~~~~~-----~~~-----~~~~~~~gi-~~~~ip~~D~ 121 (208)
++.|++.|++.|+-++..+-. ... .+.+.+.|+ +|..+|..+.
T Consensus 247 l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~ 300 (316)
T PF00762_consen 247 LEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLND 300 (316)
T ss_dssp HHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT
T ss_pred HHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCC
Confidence 567889999999998765422 111 345667899 8999998665
No 185
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=25.28 E-value=2e+02 Score=23.07 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCC
Q 028500 132 RAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKH 171 (208)
Q Consensus 132 ~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~ 171 (208)
.+.+.|.+..+..+..+.-|-+|=-++.++.++|.+..+|
T Consensus 99 ~I~~~i~~l~~~~~~~lh~sIAGGRKtMs~~~~~a~sL~g 138 (224)
T PF09623_consen 99 FIYRLIRELKQDPGRRLHVSIAGGRKTMSFYAGYAASLFG 138 (224)
T ss_pred HHHHHHHHHhhCCCCeEEEEecCChHHHHHHHHHHHHHcC
Confidence 3344455544554555555667755788888888776665
No 186
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=25.27 E-value=1.9e+02 Score=25.04 Aligned_cols=12 Identities=42% Similarity=0.958 Sum_probs=9.3
Q ss_pred CCCcEEEEcCCCC
Q 028500 143 AGKTTYVHCKAGR 155 (208)
Q Consensus 143 ~~~~VlVHC~~G~ 155 (208)
.|. ||-||.+|-
T Consensus 160 dg~-ILTHcnaG~ 171 (356)
T PRK08334 160 EGN-VLTHCNAGS 171 (356)
T ss_pred CCC-EEEecCcch
Confidence 344 999998875
No 187
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=25.16 E-value=1.4e+02 Score=20.79 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=13.5
Q ss_pred CcEEEEcCCCCCchHHH
Q 028500 145 KTTYVHCKAGRGRSTTI 161 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v 161 (208)
++|++-|.+|.|=|-.+
T Consensus 4 kkIllvC~~G~sTSll~ 20 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLV 20 (106)
T ss_pred CEEEEECCCCccHHHHH
Confidence 57999999999866444
No 188
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=25.06 E-value=3.4e+02 Score=21.22 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCC-----CCchHHHHHHHHHHhCCCCHHHHHHHHH
Q 028500 130 IRRAVDFIHSNSCAGKTTYVHCKAG-----RGRSTTIVLCYLVEYKHMAPAAALEYVR 182 (208)
Q Consensus 130 ~~~~~~~i~~~~~~~~~VlVHC~~G-----~~RS~~v~~ayL~~~~~~s~~~A~~~vr 182 (208)
......-+.+..+.|.++.+-.-.+ .+......+..++...|+++++|++.+.
T Consensus 222 ~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T 279 (304)
T PF13147_consen 222 LREDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAAT 279 (304)
T ss_dssp THHHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHT
T ss_pred chhhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHH
Confidence 4444555677777888999988765 4455566666667678999999998764
No 189
>PLN02449 ferrochelatase
Probab=24.89 E-value=2.9e+02 Score=25.02 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=48.2
Q ss_pred ccccCceEEcCCCCCCChhHHHhCCCcEEEEecCCCcc-----CC-----CccchhcCCc-EEEEEeCCCCCCCCcHHHH
Q 028500 62 DEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYET-----LV-----PSSLYHAHGI-DHLVIPTRDYLFAPSFVDI 130 (208)
Q Consensus 62 ~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~-----~~-----~~~~~~~~gi-~~~~ip~~D~~~~~~~~~~ 130 (208)
+++.|.=|+++.. ..-++.|.+.|++.|+-+.-.+-. .. -.+.+++.|+ +|..+|..+.. ...+
T Consensus 328 SR~Gp~eWL~P~t-~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~~----p~FI 402 (485)
T PLN02449 328 SRVGPVEWLKPYT-DETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGCE----PTFI 402 (485)
T ss_pred CCCCCCCCCCCCH-HHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCCC----HHHH
Confidence 3444444444421 123567888999999888754421 11 1234667898 69999986652 3345
Q ss_pred HHHHHHHHHHhhCCCcEEEE
Q 028500 131 RRAVDFIHSNSCAGKTTYVH 150 (208)
Q Consensus 131 ~~~~~~i~~~~~~~~~VlVH 150 (208)
+...+.+.+.+...+...+.
T Consensus 403 ~~La~lV~~~l~~~~~~~~~ 422 (485)
T PLN02449 403 SDLADAVIEALPYVGAMAVS 422 (485)
T ss_pred HHHHHHHHHHhhcccccccc
Confidence 55666677766542333333
No 190
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=24.74 E-value=2.5e+02 Score=23.86 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=36.6
Q ss_pred hCCCcEEEEcCCCCC-chHHHHHHHHHHhCC----CCHHHHHHHHHHhCCCCccCHHHHHHH
Q 028500 142 CAGKTTYVHCKAGRG-RSTTIVLCYLVEYKH----MAPAAALEYVRCRRPRVLLAPSQWKLI 198 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~-RS~~v~~ayL~~~~~----~s~~~A~~~vr~~Rp~~~~~~~~~~~L 198 (208)
..|-||+.|...|++ ++|+. -++...| .+++++.+.+.+......+.+.+--.+
T Consensus 97 ~~G~~V~kHG~r~~~s~~Gs~---d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~ 155 (330)
T TIGR01245 97 AAGVKVAKHGNRSVSSKSGSA---DVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAM 155 (330)
T ss_pred hCCCEEEEeCCCCCCCCccHH---HHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHH
Confidence 358999999998887 88762 2343444 578889999988766555544443333
No 191
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=24.73 E-value=1.6e+02 Score=17.49 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=21.8
Q ss_pred CCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q 028500 153 AGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRR 185 (208)
Q Consensus 153 ~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~R 185 (208)
.|.+|...-++.-|+ ..|++|+.--..+++.|
T Consensus 17 tgLd~etL~ici~L~-e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 17 TGLDRETLSICIELC-ENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCCHHHHHHHHHHH-HCCCCHHHHHHHHHHhC
Confidence 388888655544455 67999986666666655
No 192
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=24.63 E-value=4.7e+02 Score=23.12 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhCC-CcEEEEcC-----------C-----CCCchHHHHHHHHHHhCCCC-----HHHHHHHHHH------
Q 028500 132 RAVDFIHSNSCAG-KTTYVHCK-----------A-----GRGRSTTIVLCYLVEYKHMA-----PAAALEYVRC------ 183 (208)
Q Consensus 132 ~~~~~i~~~~~~~-~~VlVHC~-----------~-----G~~RS~~v~~ayL~~~~~~s-----~~~A~~~vr~------ 183 (208)
.+.+.|.++.++| .-+-|||- . =+||-|++.++|+++...-+ ++.-++..++
T Consensus 141 ~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtlS 220 (423)
T TIGR00190 141 DMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTLS 220 (423)
T ss_pred HHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeee
Confidence 4455566666665 46889995 1 15899999999999876553 3334444443
Q ss_pred ----hCCCCccCHHHHHHHHHH
Q 028500 184 ----RRPRVLLAPSQWKLISPS 201 (208)
Q Consensus 184 ----~Rp~~~~~~~~~~~L~~~ 201 (208)
.||+......-..|++++
T Consensus 221 LGDglRPG~i~DA~D~aQi~El 242 (423)
T TIGR00190 221 LGDGLRPGCIADATDRAQISEL 242 (423)
T ss_pred ccCCcCCCccccCCcHHHHHHH
Confidence 688777655444444443
No 193
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=24.49 E-value=2e+02 Score=24.76 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=13.2
Q ss_pred hhCCCcEEEEcCCCCCch
Q 028500 141 SCAGKTTYVHCKAGRGRS 158 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS 158 (208)
+..|..||.||.+|.-.+
T Consensus 144 I~~g~~ILThc~sg~lat 161 (344)
T PRK05720 144 IRKGQGILTHCNAGWLAT 161 (344)
T ss_pred ccCCCEEEEecCCCccee
Confidence 345778999999986443
No 194
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=24.07 E-value=3e+02 Score=20.72 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHH-------------------HHHHHhCCCCHHHHHHHHHH
Q 028500 129 DIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVL-------------------CYLVEYKHMAPAAALEYVRC 183 (208)
Q Consensus 129 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~-------------------ayL~~~~~~s~~~A~~~vr~ 183 (208)
.+....+.|.+..+.| +++|+ ||+|..+. -.+|...|++.++|.+.++.
T Consensus 81 ~~~~~~~~i~~la~~~-~~Vi~-----GR~a~~il~~~~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A~~~i~~ 148 (179)
T PF13189_consen 81 IFRAQSEIIRELAAKG-NCVIV-----GRCANYILRDIPNVLHVFIYAPLEFRVERIMEREGISEEEAEKLIKK 148 (179)
T ss_dssp HHHHHHHHHHHHHH----EEEE-----STTHHHHTTT-TTEEEEEEEE-HHHHHHHHHHHHT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-CEEEE-----ecCHhhhhCCCCCeEEEEEECCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444445666665554 55554 67766443 55677779999999988876
No 195
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=23.95 E-value=92 Score=27.38 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=26.9
Q ss_pred EEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q 028500 148 YVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRR 185 (208)
Q Consensus 148 lVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~R 185 (208)
..||.+ .|..|-+ +-++|...|++..+|++.+...-
T Consensus 55 ~~~Cf~-Cg~~Gd~-i~fv~~~~~~sf~eA~~~La~~~ 90 (415)
T TIGR01391 55 FYHCFG-CGAGGDA-IKFLMEIEGISFVEAVEELAKRA 90 (415)
T ss_pred cEEECC-CCCCCCH-HHHHHHHhCCCHHHHHHHHHHHc
Confidence 478863 3445544 67789899999999999997753
No 196
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=23.45 E-value=3e+02 Score=20.10 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=34.2
Q ss_pred CcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC--CCcEEEEcCCCCCchHHHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 028500 110 GIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA--GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRP 186 (208)
Q Consensus 110 gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~--~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp 186 (208)
+..++++--......-+...+....+.+.+.+++ ++-|++=| +-||+.+.| ++.+++++...|-
T Consensus 40 ~~~viWlT~~~~~~~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~-----------lEYL~l~Ng--F~~v~KFL~~LkD 105 (136)
T PF05763_consen 40 NTPVIWLTKVEGENAISPTNLHKLLDTIVRFLKENGNGVVIIDG-----------LEYLILENG--FESVLKFLASLKD 105 (136)
T ss_pred CCcEEEEeccCCCCccCchhhHHHHHHHHHHHHhCCCcEEEEec-----------HHHHHHHcC--HHHHHHHHHHhHH
Confidence 4455555443221121222344444444444433 56788877 568998776 5666677766663
No 197
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.44 E-value=2e+02 Score=24.47 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHhhCC-CcEEEEcCCCC
Q 028500 126 SFVDIRRAVDFIHSNSCAG-KTTYVHCKAGR 155 (208)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~~-~~VlVHC~~G~ 155 (208)
..+.+..+++++...-..+ .-++.||..+.
T Consensus 144 tl~Ei~~Av~~i~~~G~~~~~i~llhC~s~Y 174 (329)
T TIGR03569 144 TLEEIEAAVGVLRDAGTPDSNITLLHCTTEY 174 (329)
T ss_pred CHHHHHHHHHHHHHcCCCcCcEEEEEECCCC
Confidence 5677888888886432111 36899998864
No 198
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=23.25 E-value=1.5e+02 Score=24.81 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=14.4
Q ss_pred hhCCCcEEEEcCCCCCchHH
Q 028500 141 SCAGKTTYVHCKAGRGRSTT 160 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~~RS~~ 160 (208)
+...++|.++|..|..=|.+
T Consensus 231 i~~~~~vI~yCgsG~~As~~ 250 (285)
T COG2897 231 IDPDKEVIVYCGSGVRASVT 250 (285)
T ss_pred CCCCCCEEEEcCCchHHHHH
Confidence 45568999999999743333
No 199
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=22.92 E-value=1.3e+02 Score=24.21 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHH
Q 028500 129 DIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCY 165 (208)
Q Consensus 129 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ay 165 (208)
.++++.+.+.+.....+.|.||=.+|+|-|.++..++
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~ 40 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVA 40 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecc
Confidence 4566666666654556789999999999997766554
No 200
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=22.91 E-value=74 Score=23.79 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=38.4
Q ss_pred CceEEcCCCCCCChhHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeC
Q 028500 66 QFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPT 118 (208)
Q Consensus 66 ~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~ 118 (208)
-.||+.-.|=..-...+...||+.|+-.............++..|++..+++.
T Consensus 88 ~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~~~~~~l~~~gi~v~~~~~ 140 (151)
T TIGR02571 88 AEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHPYAIELFEQAGVELKKVPF 140 (151)
T ss_pred cEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcHHHHHHHHHCCCEEEEeCc
Confidence 34888888888888888999999999864321111124477889999988874
No 201
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=22.82 E-value=2.1e+02 Score=24.79 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=39.5
Q ss_pred CCCcEEEEecCCCccCCC--ccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEc
Q 028500 85 LGVGGVITLNEPYETLVP--SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHC 151 (208)
Q Consensus 85 ~gI~~Vi~l~~~~~~~~~--~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC 151 (208)
.+.+.|+|+..++..... -..+...|..|..+ .--...|+.+++.-++.....+-+.|||
T Consensus 70 ~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~Di-------TGEi~~fe~~i~~yh~~A~~~Ga~Ii~~ 131 (382)
T COG3268 70 SRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADI-------TGEIMFFENSIDLYHAQAADAGARIIPG 131 (382)
T ss_pred hcceEEEeccccccccccHHHHHHHHhCCCeeec-------cccHHHHHHHHHHHHHHHHhcCCEEecc
Confidence 588999999988754222 23455678777755 2234567777777666555557777787
No 202
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=22.80 E-value=45 Score=22.59 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.4
Q ss_pred CCCcccccCceEEcCCCCC
Q 028500 58 FRWWDEVDQFLLLGAVPFP 76 (208)
Q Consensus 58 ~~~~~~I~~~l~lG~~~~~ 76 (208)
..|+-+|.+++|+|+....
T Consensus 18 t~wllEv~~GVyVg~~s~r 36 (87)
T TIGR01873 18 ALWLLEPRAGVYVGGVSAS 36 (87)
T ss_pred hhheeecCCCcEEcCCCHH
Confidence 4688999999999976554
No 203
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=22.73 E-value=4.6e+02 Score=21.99 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=57.9
Q ss_pred hHHHhCCCcEEEEecCCCccCCCccchhcCCcEEEEEeCCCCCCCCc----------HHHHHHHHHHHHHHhhCCCcEEE
Q 028500 80 PRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPS----------FVDIRRAVDFIHSNSCAGKTTYV 149 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~~~~~~~~~~~~~gi~~~~ip~~D~~~~~~----------~~~~~~~~~~i~~~~~~~~~VlV 149 (208)
+.|++++|+.+|-+........-....+..++..+.+|..=+++-+. .+...++++-+........+++|
T Consensus 85 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~~ta~s~~rv~i 164 (301)
T TIGR02482 85 ENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATSHERAFV 164 (301)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 46889999999999765432111223333688999999722111221 12333444444332333467888
Q ss_pred EcCCCCCchHHHHHHHHHHh--------CCCCHHHHHHHHHHh
Q 028500 150 HCKAGRGRSTTIVLCYLVEY--------KHMAPAAALEYVRCR 184 (208)
Q Consensus 150 HC~~G~~RS~~v~~ayL~~~--------~~~s~~~A~~~vr~~ 184 (208)
-=..|.+-.-..+.+-|... ...++++-++.++++
T Consensus 165 vEvMGR~~G~lAl~~~la~gad~iliPE~~~~~~~l~~~i~~r 207 (301)
T TIGR02482 165 IEVMGRHAGDLALYSGIATGAEIIIIPEFDYDIDELIQRLKEQ 207 (301)
T ss_pred EEeCCCCHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 87888643333333333321 356777777777654
No 204
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=22.72 E-value=88 Score=26.29 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCCc
Q 028500 132 RAVDFIHSNSCAGKTTYVHCKAGRGR 157 (208)
Q Consensus 132 ~~~~~i~~~~~~~~~VlVHC~~G~~R 157 (208)
++.+.+..+...|-++.+||..+-++
T Consensus 256 ~a~~i~~~a~~~gi~~~~g~~~es~i 281 (321)
T PRK15129 256 EALALATEARAQGFALMLGCMLCTSR 281 (321)
T ss_pred HHHHHHHHHHHcCCcEEEecchHHHH
Confidence 34445555666788999999854433
No 205
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=22.70 E-value=2.6e+02 Score=19.01 Aligned_cols=69 Identities=17% Similarity=0.086 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHHhCCCCH---------HHHHHHHHHhCCCCc----cCHHHHH
Q 028500 130 IRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAP---------AAALEYVRCRRPRVL----LAPSQWK 196 (208)
Q Consensus 130 ~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~---------~~A~~~vr~~Rp~~~----~~~~~~~ 196 (208)
++.+.++|+...+.|+++++.-..+ +||..-.+..| ...|.+. ..+..++++..+.-. -+++..+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~~~~~l~~~~~~~~v~vlG~~~l~~ 93 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNS-SRSREEYAKKL-KKLGIPVDEDEIITSGMAAAEYLKEHKGGKKVYVLGSDGLRE 93 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHHHHH-HHTTTT--GGGEEEHHHHHHHHHHHHTTSSEEEEES-HHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHHHHH-HhcCcCCCcCEEEChHHHHHHHHHhcCCCCEEEEEcCHHHHH
Confidence 4567788888888888888876554 57766666666 4466543 336777777543222 2555555
Q ss_pred HHHH
Q 028500 197 LISP 200 (208)
Q Consensus 197 ~L~~ 200 (208)
.+.+
T Consensus 94 ~l~~ 97 (101)
T PF13344_consen 94 ELRE 97 (101)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 206
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=22.68 E-value=33 Score=23.49 Aligned_cols=8 Identities=38% Similarity=0.173 Sum_probs=3.5
Q ss_pred eeeccHHH
Q 028500 23 IVKADAKR 30 (208)
Q Consensus 23 ~~~~~~~~ 30 (208)
..++.++|
T Consensus 86 s~gP~AKR 93 (96)
T PF15387_consen 86 SDGPPAKR 93 (96)
T ss_pred CCCCcccC
Confidence 34444443
No 207
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=22.40 E-value=1.4e+02 Score=29.18 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=36.6
Q ss_pred cchhcCCcEEEEEeCCCC------C---CCCcHHHHHHHHHHHHHHhhCCCcEEEEcCC
Q 028500 104 SLYHAHGIDHLVIPTRDY------L---FAPSFVDIRRAVDFIHSNSCAGKTTYVHCKA 153 (208)
Q Consensus 104 ~~~~~~gi~~~~ip~~D~------~---~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 153 (208)
++++..++..+.+|.+-. + .....+.+.++++.|.+....|.||||-|..
T Consensus 400 Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~s 458 (908)
T PRK13107 400 EFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVS 458 (908)
T ss_pred HHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 456677889999997332 1 0112466788888898888899999999965
No 208
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=22.34 E-value=4.1e+02 Score=24.72 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEc-CCCCCchHHHH-HHHHHHhCCCCHHHHHHHHHHhC
Q 028500 128 VDIRRAVDFIHSNSCAGKTTYVHC-KAGRGRSTTIV-LCYLVEYKHMAPAAALEYVRCRR 185 (208)
Q Consensus 128 ~~~~~~~~~i~~~~~~~~~VlVHC-~~G~~RS~~v~-~ayL~~~~~~s~~~A~~~vr~~R 185 (208)
+.+.+-.+.|.+.+++|+.+||+= ..|+.+-..-+ ...+.+.+++|.++|-.+++..+
T Consensus 518 d~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk 577 (587)
T COG0369 518 DRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELK 577 (587)
T ss_pred HHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 456666777888888899999966 56665555433 33456678889999988887765
No 209
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=22.22 E-value=1e+02 Score=28.56 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=27.8
Q ss_pred CcEEEEcCCCCCchHHHHHHHHHH---hCCCCHHHHHHHHHH
Q 028500 145 KTTYVHCKAGRGRSTTIVLCYLVE---YKHMAPAAALEYVRC 183 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~~ayL~~---~~~~s~~~A~~~vr~ 183 (208)
.|..|||.-|. ++++..+||+ ..+++.++|+..++.
T Consensus 161 ~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 161 DPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 79999999998 5778888754 357888888876553
No 210
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=22.18 E-value=2.2e+02 Score=21.54 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=27.4
Q ss_pred chhcCCcEEEEEeCC--CCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCC
Q 028500 105 LYHAHGIDHLVIPTR--DYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAG 154 (208)
Q Consensus 105 ~~~~~gi~~~~ip~~--D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G 154 (208)
..++.|+++..+.+. |.. .+.. +++++.+.+....|.-|+.|+..+
T Consensus 115 ~l~~~G~~~v~w~~~~~D~~-~~~~---~~i~~~~~~~~~~g~Iil~Hd~~~ 162 (191)
T TIGR02764 115 AAESLGYTVVHWSVDSRDWK-NPGV---ESIVDRVVKNTKPGDIILLHASDS 162 (191)
T ss_pred HHHHcCCeEEEecCCCCccC-CCCH---HHHHHHHHhcCCCCCEEEEeCCCC
Confidence 456788888777663 332 2332 234444455556677899999433
No 211
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=21.95 E-value=2e+02 Score=20.42 Aligned_cols=50 Identities=10% Similarity=0.127 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEc-CCCCCchHHHHHHHHHHhCCC----CHHHHHHHHHHh
Q 028500 129 DIRRAVDFIHSNSCAGKTTYVHC-KAGRGRSTTIVLCYLVEYKHM----APAAALEYVRCR 184 (208)
Q Consensus 129 ~~~~~~~~i~~~~~~~~~VlVHC-~~G~~RS~~v~~ayL~~~~~~----s~~~A~~~vr~~ 184 (208)
.++++...+....++ |+ ..|.-|||.+++..++...|. +.+++..++...
T Consensus 50 i~~kAa~l~~~l~~~------HpF~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~v 104 (121)
T TIGR01550 50 IFEVSAVLLYALIRS------HPFNNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGV 104 (121)
T ss_pred HHHHHHHHHHHHHHh------CCCccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHH
Confidence 356666665555442 44 468889999999888877664 567677776654
No 212
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=21.89 E-value=2.5e+02 Score=19.09 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=16.7
Q ss_pred CCcEEEEcCCCCCchHHHHHH
Q 028500 144 GKTTYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 144 ~~~VlVHC~~G~~RS~~v~~a 164 (208)
++.++|+=..|.|.|.++-..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 678999999999999665444
No 213
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=21.88 E-value=2.6e+02 Score=18.69 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=12.3
Q ss_pred hhHHHhCCCcEEEEecC
Q 028500 79 VPRLKQLGVGGVITLNE 95 (208)
Q Consensus 79 ~~~L~~~gI~~Vi~l~~ 95 (208)
...+.+.||+.|+|.++
T Consensus 79 ~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 79 ADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHHHTT-SEEEEESS
T ss_pred HHHHHHcCCCEEEEeCC
Confidence 34566789999999875
No 214
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.74 E-value=3.1e+02 Score=24.08 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=35.2
Q ss_pred HHHHHHhhCCCcEEEEcCCCCCch---HHHHHHHHHHhCCCCHHHHHHHHH
Q 028500 135 DFIHSNSCAGKTTYVHCKAGRGRS---TTIVLCYLVEYKHMAPAAALEYVR 182 (208)
Q Consensus 135 ~~i~~~~~~~~~VlVHC~~G~~RS---~~v~~ayL~~~~~~s~~~A~~~vr 182 (208)
.-+...++.|-+|.+.+-.|.+.+ -.+.+.+++. .+||+.+|+..+.
T Consensus 297 ~~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~~-~gmtp~EaL~a~T 346 (406)
T COG1228 297 KPARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAVR-LGMTPEEALKAAT 346 (406)
T ss_pred hhHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 336677778999999999998884 2345555554 4599999998774
No 215
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=21.56 E-value=1.5e+02 Score=18.56 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=15.5
Q ss_pred hCCCcEEEEcCCCCCchHHHHHHHHH
Q 028500 142 CAGKTTYVHCKAGRGRSTTIVLCYLV 167 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~v~~ayL~ 167 (208)
..+.+|+|+|..|. |+ ..++.+|.
T Consensus 48 ~~~~~vv~~c~~~~-~a-~~~~~~l~ 71 (89)
T cd00158 48 DKDKPIVVYCRSGN-RS-ARAAKLLR 71 (89)
T ss_pred CCCCeEEEEeCCCc-hH-HHHHHHHH
Confidence 35689999999963 44 33444444
No 216
>PF15195 TMEM210: TMEM210 family
Probab=21.52 E-value=1.2e+02 Score=20.95 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=20.2
Q ss_pred EEEcCCCCCchHHHHHHHHHHhCCCCHHHHH
Q 028500 148 YVHCKAGRGRSTTIVLCYLVEYKHMAPAAAL 178 (208)
Q Consensus 148 lVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~ 178 (208)
|--|.-|.||-+.+++...+.--+.|-.-|+
T Consensus 2 yCeCsLGLSREALIALlVVLAgv~ascfcal 32 (116)
T PF15195_consen 2 YCECSLGLSREALIALLVVLAGVSASCFCAL 32 (116)
T ss_pred cceeecccCHHHHHHHHHHHhccchhHHHHH
Confidence 4569999999998877655543333444443
No 217
>PRK10302 hypothetical protein; Provisional
Probab=21.45 E-value=4.7e+02 Score=21.61 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=39.5
Q ss_pred hHHHhCCCcEEEEecCCC----------------ccCCCccchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC
Q 028500 80 PRLKQLGVGGVITLNEPY----------------ETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA 143 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~----------------~~~~~~~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~ 143 (208)
+.|+++||..|+.=.... ....|........+.|+++--.+.. .-..+.+++.++.|.+.. .
T Consensus 148 ~lL~~~~~~~v~~D~~~~~~~~~~~~~~~daq~~~~~~P~~~~~T~~~~yvRlhG~~~~-~y~~~~L~~wa~~i~~w~-~ 225 (272)
T PRK10302 148 RGLHQRGVNRVILDSRPVHAARPHSEAIRDAQRKKPKVPVHAVVTADNPLVRFIGSDDM-AQNLELFQVWLQKLPQWH-Q 225 (272)
T ss_pred HHHHHcCCEEEecCccccccCCCCcHHHHHHhhcCCCCCCCeecCCCcEEEEEeCCCCC-CCCHHHHHHHHHHHHHHH-h
Confidence 478899998775332100 0112222222235666666544422 345678888888888874 4
Q ss_pred CCc--EEEEcCCC
Q 028500 144 GKT--TYVHCKAG 154 (208)
Q Consensus 144 ~~~--VlVHC~~G 154 (208)
++. |++|+..+
T Consensus 226 ~~~~yvff~n~~~ 238 (272)
T PRK10302 226 TTTPYLFIHTPDI 238 (272)
T ss_pred CCCEEEEEeCCch
Confidence 455 45555543
No 218
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=21.28 E-value=2.9e+02 Score=21.52 Aligned_cols=45 Identities=18% Similarity=0.470 Sum_probs=28.9
Q ss_pred chhcCCcEEEEEeC-CCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCch
Q 028500 105 LYHAHGIDHLVIPT-RDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRS 158 (208)
Q Consensus 105 ~~~~~gi~~~~ip~-~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 158 (208)
.++..+....++|. .|. . .++.|++++.+.- ...|+|.+..|- |-
T Consensus 59 ~~~~~~~~~~~~p~~KD~--T----D~e~Al~~~~~~~--~~~i~i~Ga~Gg-R~ 104 (208)
T cd07995 59 YYKSKGVEIIHFPDEKDF--T----DFEKALKLALERG--ADEIVILGATGG-RL 104 (208)
T ss_pred HHHhcCCeEEECCCCCCC--C----HHHHHHHHHHHcC--CCEEEEEccCCC-cH
Confidence 34455777788887 443 2 3566776665532 258999998884 64
No 219
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=21.26 E-value=66 Score=27.39 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=11.9
Q ss_pred hhCCCcEEEEcCCCC
Q 028500 141 SCAGKTTYVHCKAGR 155 (208)
Q Consensus 141 ~~~~~~VlVHC~~G~ 155 (208)
+..+..||-||.+|.
T Consensus 147 l~~~~~VLThCNaGa 161 (346)
T COG0182 147 LPDGDTVLTHCNAGA 161 (346)
T ss_pred hccCCeEEeeecCCc
Confidence 345778999999985
No 220
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=21.21 E-value=5.2e+02 Score=22.03 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=32.2
Q ss_pred HHHHHHhhCCCcEEEEcCC-CCCchHHHH-HHHHHHhCCCCHHHHHHHHHHhC
Q 028500 135 DFIHSNSCAGKTTYVHCKA-GRGRSTTIV-LCYLVEYKHMAPAAALEYVRCRR 185 (208)
Q Consensus 135 ~~i~~~~~~~~~VlVHC~~-G~~RS~~v~-~ayL~~~~~~s~~~A~~~vr~~R 185 (208)
+.+.+.+..+..|||+=.. ++.+...-+ ...++...+++.++|.+++++.+
T Consensus 298 ~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~ 350 (360)
T cd06199 298 AELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELK 350 (360)
T ss_pred HHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3333344456778875555 676654433 33455668899999988887765
No 221
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.17 E-value=2.3e+02 Score=21.26 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHH
Q 028500 126 SFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~ 162 (208)
..+.+.++++.|.+++.++++|++. |.|.|..++
T Consensus 15 ~~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 15 LAEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 4578899999999998888888875 555666655
No 222
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=21.15 E-value=71 Score=20.00 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=13.9
Q ss_pred cEEEEcCCCCCchHHHHHH
Q 028500 146 TTYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v~~a 164 (208)
++++-|..|.+-|..+...
T Consensus 1 ~il~vc~~G~~~s~~l~~~ 19 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEK 19 (84)
T ss_pred CEEEECCCcHhHHHHHHHH
Confidence 4789999998776555443
No 223
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.01 E-value=77 Score=21.51 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=10.8
Q ss_pred cEEEEcCCCCCch
Q 028500 146 TTYVHCKAGRGRS 158 (208)
Q Consensus 146 ~VlVHC~~G~~RS 158 (208)
+||+-|.+|++=|
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 4899999999655
No 224
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=20.99 E-value=1.7e+02 Score=28.02 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=34.7
Q ss_pred cchhcCCcEEEEEeCCCC------CC---CCcHHHHHHHHHHHHHHhhCCCcEEEEcCC
Q 028500 104 SLYHAHGIDHLVIPTRDY------LF---APSFVDIRRAVDFIHSNSCAGKTTYVHCKA 153 (208)
Q Consensus 104 ~~~~~~gi~~~~ip~~D~------~~---~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 153 (208)
++.+..++....+|.+-. +. ....+.+..+++.+.+...+|.||||-|..
T Consensus 356 E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~s 414 (745)
T TIGR00963 356 EFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTS 414 (745)
T ss_pred HHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 345567888899997332 10 123356777778887778889999999963
No 225
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=20.98 E-value=1.4e+02 Score=24.95 Aligned_cols=44 Identities=18% Similarity=0.066 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCCchHHHH---HHHHHHhCCCC
Q 028500 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIV---LCYLVEYKHMA 173 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~---~ayL~~~~~~s 173 (208)
.+.+.++++.+.+.+.++++|++ | |.|-|+.++ ++.+...+|.+
T Consensus 45 l~~I~~av~~~~~~l~~ggrI~~-~--GaGtSg~la~~da~e~~~tfg~~ 91 (299)
T PRK05441 45 LPQIAAAVDAAAAALRQGGRLIY-I--GAGTSGRLGVLDASECPPTFGVP 91 (299)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEE-E--cCcHHHHHHHHHHHhCcCccCCC
Confidence 35667777778888888888765 3 444455544 33344344554
No 226
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=20.90 E-value=2.2e+02 Score=24.52 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=14.0
Q ss_pred hCCCcEEEEcCCCCCchHH
Q 028500 142 CAGKTTYVHCKAGRGRSTT 160 (208)
Q Consensus 142 ~~~~~VlVHC~~G~~RS~~ 160 (208)
..+.+|+|+|..|. ||..
T Consensus 55 ~~~~~IvvyC~~G~-rs~~ 72 (376)
T PRK08762 55 DRDREIVLICASGT-RSAH 72 (376)
T ss_pred CCCCeEEEEcCCCc-HHHH
Confidence 45689999999885 7654
No 227
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=20.63 E-value=3.7e+02 Score=23.47 Aligned_cols=45 Identities=24% Similarity=0.222 Sum_probs=28.1
Q ss_pred HHHHHHhhCCCcEEEEcCCCCCchHHHHHHHHHH-----hCCCCHHHHHHHHH
Q 028500 135 DFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVE-----YKHMAPAAALEYVR 182 (208)
Q Consensus 135 ~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL~~-----~~~~s~~~A~~~vr 182 (208)
+.+..+.+.|.+|.+||..-. +..+.+|+-. +...+.+++.+.++
T Consensus 125 ~~i~~A~~~g~~v~~Ha~g~~---~~~L~a~l~aGi~~dH~~~~~eea~e~l~ 174 (422)
T cd01295 125 AKIQAAKKAGKPVDGHAPGLS---GEELNAYMAAGISTDHEAMTGEEALEKLR 174 (422)
T ss_pred HHHHHHHhCCCEEEEeCCCCC---HHHHHHHHHcCCCCCcCCCcHHHHHHHHH
Confidence 344555667899999994322 3444444432 24567888888875
No 228
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=20.62 E-value=2.1e+02 Score=21.51 Aligned_cols=23 Identities=4% Similarity=0.075 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcC
Q 028500 130 IRRAVDFIHSNSCAGKTTYVHCK 152 (208)
Q Consensus 130 ~~~~~~~i~~~~~~~~~VlVHC~ 152 (208)
++++.+.+.++++.++|.+|+.+
T Consensus 153 l~~~~~al~~a~~~~gp~lI~v~ 175 (178)
T cd02008 153 LKAIREELKEALAVPGVSVIIAK 175 (178)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEe
Confidence 44444555666666789999875
No 229
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=20.59 E-value=53 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=15.3
Q ss_pred CCCcccccCceEEcCCCCC
Q 028500 58 FRWWDEVDQFLLLGAVPFP 76 (208)
Q Consensus 58 ~~~~~~I~~~l~lG~~~~~ 76 (208)
..|+-+|.+++|+|+....
T Consensus 20 t~wllEv~~GVyVg~~S~r 38 (97)
T PRK11558 20 AVWLLEVRAGVYVGDVSRR 38 (97)
T ss_pred hhheEecCCCcEEcCCCHH
Confidence 4688999999999976543
No 230
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=20.58 E-value=1.5e+02 Score=28.97 Aligned_cols=50 Identities=10% Similarity=0.162 Sum_probs=35.5
Q ss_pred cchhcCCcEEEEEeCCCC------C---CCCcHHHHHHHHHHHHHHhhCCCcEEEEcCC
Q 028500 104 SLYHAHGIDHLVIPTRDY------L---FAPSFVDIRRAVDFIHSNSCAGKTTYVHCKA 153 (208)
Q Consensus 104 ~~~~~~gi~~~~ip~~D~------~---~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~ 153 (208)
++++..++....+|.+-. + .....+.+..+++.|.+....|.||||-|..
T Consensus 395 Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~S 453 (896)
T PRK13104 395 EFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVS 453 (896)
T ss_pred HHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 455667888888987322 1 0123466777888888888899999999964
No 231
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.47 E-value=5.4e+02 Score=21.88 Aligned_cols=80 Identities=19% Similarity=0.093 Sum_probs=49.9
Q ss_pred ChhHHHhCCCcEEEEecCCCccCCCc------cchhcCCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEc
Q 028500 78 DVPRLKQLGVGGVITLNEPYETLVPS------SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHC 151 (208)
Q Consensus 78 ~~~~L~~~gI~~Vi~l~~~~~~~~~~------~~~~~~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC 151 (208)
.++..++.|....+++...... .+. +...+.|...+ -+.|....-....+.+.+..+.+.+...-+|-+||
T Consensus 119 ~i~~ak~~G~~v~~~l~~s~~~-~~e~l~~~a~~~~~~Ga~~i--~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 195 (333)
T TIGR03217 119 HIGMARELGMDTVGFLMMSHMT-PPEKLAEQAKLMESYGADCV--YIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHA 195 (333)
T ss_pred HHHHHHHcCCeEEEEEEcccCC-CHHHHHHHHHHHHhcCCCEE--EEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 3456678999988888754321 111 12334566544 44454445566778888888887765446899999
Q ss_pred CCCCCchHH
Q 028500 152 KAGRGRSTT 160 (208)
Q Consensus 152 ~~G~~RS~~ 160 (208)
..-.|=+.+
T Consensus 196 HnnlGla~A 204 (333)
T TIGR03217 196 HHNLSLAVA 204 (333)
T ss_pred CCCCchHHH
Confidence 865554433
No 232
>PTZ00458 acyl CoA binding protein; Provisional
Probab=20.41 E-value=2.4e+02 Score=19.14 Aligned_cols=33 Identities=9% Similarity=-0.041 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHHhhc
Q 028500 174 PAAALEYVRCRRPRVLLAPSQWKLISPSQSRSI 206 (208)
Q Consensus 174 ~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~l~ 206 (208)
++.|..+|+.......++...+-.|..|+++-.
T Consensus 5 F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt 37 (90)
T PTZ00458 5 FEECVSFINSLPKTVNLSVEIKLDLYKYYKQST 37 (90)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhc
Confidence 678888998876665678888888888877643
No 233
>PRK10812 putative DNAse; Provisional
Probab=20.38 E-value=1.8e+02 Score=23.74 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcCCCCC
Q 028500 129 DIRRAVDFIHSNSCAGKTTYVHCKAGRG 156 (208)
Q Consensus 129 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~ 156 (208)
+..-+-..+.-+.+.+.||.|||..+..
T Consensus 109 Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~ 136 (265)
T PRK10812 109 QQESFRHHIQIGRELNKPVIVHTRDARA 136 (265)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeeCchH
Confidence 3333444455555567899999876543
No 234
>PRK10318 hypothetical protein; Provisional
Probab=20.36 E-value=1.3e+02 Score=21.72 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhC----CCcEEEEcCCCCCchH
Q 028500 132 RAVDFIHSNSCA----GKTTYVHCKAGRGRST 159 (208)
Q Consensus 132 ~~~~~i~~~~~~----~~~VlVHC~~G~~RS~ 159 (208)
.+=+||+....+ |+|=.|+|..|.-+++
T Consensus 72 taE~FI~~~ASkSs~SGkpY~V~c~~~~~~~S 103 (121)
T PRK10318 72 TAEQFIDKVASSSSISGKPYIVKCPGKSDENA 103 (121)
T ss_pred cHHHHHHHHhhhcccCCCCeEEEcCCCCcccH
Confidence 344566665543 8999999999975443
No 235
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=20.30 E-value=2.6e+02 Score=21.99 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCC
Q 028500 130 IRRAVDFIHSNSCAGKTTYVHCKAGRG 156 (208)
Q Consensus 130 ~~~~~~~i~~~~~~~~~VlVHC~~G~~ 156 (208)
+.++.+.+..+...|-++.+||..|-+
T Consensus 182 i~~~~~i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 182 LTESRRAADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 345555566666678999999976543
No 236
>PHA03338 US22 family homolog; Provisional
Probab=20.17 E-value=1.1e+02 Score=25.76 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=24.3
Q ss_pred EEcCCCCCchHHHHHHH-HHHhCCCCHHHHHHHHHHhC
Q 028500 149 VHCKAGRGRSTTIVLCY-LVEYKHMAPAAALEYVRCRR 185 (208)
Q Consensus 149 VHC~~G~~RS~~v~~ay-L~~~~~~s~~~A~~~vr~~R 185 (208)
|||.+|.+-||.+.--+ ++...+..++..-.++....
T Consensus 161 ihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~H 198 (344)
T PHA03338 161 IHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAH 198 (344)
T ss_pred eccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhcc
Confidence 69999999998877544 44445555555555554433
Done!