Query 028501
Match_columns 208
No_of_seqs 183 out of 1422
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 12:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05007 PII uridylyl-transfer 100.0 2.5E-33 5.3E-38 267.9 26.9 190 1-200 688-880 (884)
2 PRK01759 glnD PII uridylyl-tra 100.0 4.4E-33 9.5E-38 265.4 26.7 188 1-199 664-854 (854)
3 TIGR01693 UTase_glnD [Protein- 100.0 1.5E-30 3.2E-35 248.7 26.7 191 1-198 655-849 (850)
4 COG2844 GlnD UTP:GlnB (protein 100.0 8.1E-30 1.7E-34 234.2 21.9 190 1-200 671-863 (867)
5 PRK00275 glnD PII uridylyl-tra 100.0 3.8E-29 8.3E-34 239.2 26.7 194 2-203 689-890 (895)
6 PRK04374 PII uridylyl-transfer 100.0 1.5E-28 3.3E-33 234.1 27.0 188 2-200 677-868 (869)
7 PRK05092 PII uridylyl-transfer 100.0 3.4E-28 7.4E-33 234.2 27.6 196 2-204 720-920 (931)
8 PRK03381 PII uridylyl-transfer 100.0 1.2E-27 2.7E-32 226.1 25.4 184 1-195 587-773 (774)
9 PRK03059 PII uridylyl-transfer 100.0 2.3E-27 5E-32 226.2 26.0 188 1-199 665-855 (856)
10 cd04897 ACT_ACR_3 ACT domain-c 99.8 4.9E-20 1.1E-24 125.6 10.4 73 129-201 1-75 (75)
11 cd04897 ACT_ACR_3 ACT domain-c 99.8 7.1E-19 1.5E-23 119.9 11.1 73 14-87 1-73 (75)
12 cd04896 ACT_ACR-like_3 ACT dom 99.8 5.6E-19 1.2E-23 120.4 9.9 72 130-201 1-75 (75)
13 cd04895 ACT_ACR_1 ACT domain-c 99.8 1E-18 2.2E-23 118.2 9.6 68 129-196 1-70 (72)
14 cd04895 ACT_ACR_1 ACT domain-c 99.8 4.5E-18 9.7E-23 115.1 10.6 69 14-83 1-69 (72)
15 PRK11589 gcvR glycine cleavage 99.8 9.2E-18 2E-22 134.1 12.9 138 11-176 5-144 (190)
16 cd04896 ACT_ACR-like_3 ACT dom 99.7 7.7E-17 1.7E-21 109.8 10.7 72 15-88 1-74 (75)
17 cd04925 ACT_ACR_2 ACT domain-c 99.7 4.2E-16 9.2E-21 106.5 11.0 73 15-87 1-73 (74)
18 cd04900 ACT_UUR-like_1 ACT dom 99.7 4.7E-16 1E-20 105.9 10.8 71 15-86 2-73 (73)
19 cd04927 ACT_ACR-like_2 Second 99.7 2.1E-15 4.6E-20 103.5 11.0 71 16-88 2-73 (76)
20 COG2716 GcvR Glycine cleavage 99.6 3.8E-15 8.3E-20 114.9 10.2 144 12-183 3-149 (176)
21 cd04925 ACT_ACR_2 ACT domain-c 99.6 3E-14 6.6E-19 97.3 10.3 70 130-199 1-73 (74)
22 cd04927 ACT_ACR-like_2 Second 99.5 1.2E-13 2.5E-18 94.9 10.4 70 131-200 2-73 (76)
23 PRK00275 glnD PII uridylyl-tra 99.5 1.2E-13 2.7E-18 132.9 13.6 87 1-88 801-887 (895)
24 cd04900 ACT_UUR-like_1 ACT dom 99.5 2.2E-13 4.8E-18 92.6 10.6 69 130-198 2-73 (73)
25 PRK05007 PII uridylyl-transfer 99.5 1.5E-13 3.3E-18 132.3 12.4 85 1-87 795-879 (884)
26 PRK01759 glnD PII uridylyl-tra 99.5 1.3E-13 2.9E-18 132.2 12.0 84 1-86 770-853 (854)
27 cd04928 ACT_TyrKc Uncharacteri 99.5 6.2E-13 1.3E-17 88.9 9.8 65 15-86 2-67 (68)
28 PRK04374 PII uridylyl-transfer 99.5 7.2E-13 1.6E-17 127.1 13.1 85 1-87 783-867 (869)
29 cd04926 ACT_ACR_4 C-terminal 99.5 1.3E-12 2.8E-17 88.7 10.4 67 15-83 2-68 (72)
30 PRK05092 PII uridylyl-transfer 99.4 2.4E-12 5.1E-17 124.9 13.5 87 1-88 830-916 (931)
31 cd04899 ACT_ACR-UUR-like_2 C-t 99.4 3.9E-12 8.4E-17 85.3 10.5 69 15-85 1-69 (70)
32 PRK03059 PII uridylyl-transfer 99.4 5.7E-12 1.2E-16 121.1 13.0 81 2-86 774-854 (856)
33 PRK03381 PII uridylyl-transfer 99.4 5.3E-12 1.2E-16 120.2 12.0 78 2-82 695-772 (774)
34 PRK00227 glnD PII uridylyl-tra 99.4 2.6E-11 5.5E-16 113.6 15.8 144 15-199 547-691 (693)
35 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 2.1E-11 4.5E-16 81.7 10.3 69 130-198 1-70 (70)
36 TIGR01693 UTase_glnD [Protein- 99.3 1.5E-11 3.2E-16 118.4 12.2 84 1-86 766-849 (850)
37 cd04926 ACT_ACR_4 C-terminal 99.2 1.2E-10 2.7E-15 78.9 10.1 65 130-194 2-67 (72)
38 COG2844 GlnD UTP:GlnB (protein 99.2 4.4E-11 9.5E-16 111.4 10.2 84 1-86 778-861 (867)
39 cd04873 ACT_UUR-ACR-like ACT d 99.1 9.6E-10 2.1E-14 73.1 10.5 69 15-85 1-69 (70)
40 cd04873 ACT_UUR-ACR-like ACT d 99.1 2.3E-09 5E-14 71.3 10.2 68 131-198 2-70 (70)
41 cd04928 ACT_TyrKc Uncharacteri 99.0 3.5E-09 7.6E-14 70.8 9.6 64 130-198 2-67 (68)
42 PF13740 ACT_6: ACT domain; PD 99.0 7.8E-09 1.7E-13 70.7 9.5 65 14-86 2-66 (76)
43 PF13740 ACT_6: ACT domain; PD 99.0 5.4E-09 1.2E-13 71.5 8.6 67 129-200 2-68 (76)
44 cd04870 ACT_PSP_1 CT domains f 98.8 2.9E-08 6.2E-13 67.6 7.4 47 131-177 1-47 (75)
45 cd04893 ACT_GcvR_1 ACT domains 98.8 6.1E-08 1.3E-12 66.5 8.9 62 15-84 2-63 (77)
46 PF01842 ACT: ACT domain; Int 98.7 3.6E-07 7.9E-12 59.8 9.8 61 15-84 1-63 (66)
47 cd04893 ACT_GcvR_1 ACT domains 98.7 2.3E-07 5.1E-12 63.5 8.9 48 130-177 2-49 (77)
48 cd04870 ACT_PSP_1 CT domains f 98.6 1.7E-07 3.7E-12 63.8 7.6 63 16-85 1-63 (75)
49 PF01842 ACT: ACT domain; Int 98.6 2.9E-07 6.2E-12 60.3 8.4 39 130-168 1-39 (66)
50 cd04894 ACT_ACR-like_1 ACT dom 98.6 1.6E-07 3.6E-12 60.7 6.4 66 15-84 1-66 (69)
51 COG4747 ACT domain-containing 98.5 1.2E-05 2.7E-10 58.8 14.0 112 15-175 4-116 (142)
52 PRK00194 hypothetical protein; 98.5 1.5E-06 3.2E-11 61.1 8.8 48 129-176 3-50 (90)
53 cd04872 ACT_1ZPV ACT domain pr 98.4 2.1E-06 4.4E-11 60.2 8.4 48 130-177 2-49 (88)
54 cd04869 ACT_GcvR_2 ACT domains 98.4 2.6E-06 5.7E-11 58.4 8.4 36 131-166 1-36 (81)
55 COG3830 ACT domain-containing 98.4 5E-07 1.1E-11 63.0 4.4 48 129-176 3-50 (90)
56 PRK11589 gcvR glycine cleavage 98.3 1.6E-06 3.4E-11 69.5 7.0 50 128-177 7-56 (190)
57 cd04872 ACT_1ZPV ACT domain pr 98.3 2.5E-06 5.5E-11 59.7 7.0 64 15-84 2-65 (88)
58 cd04875 ACT_F4HF-DF N-terminal 98.3 2.5E-06 5.5E-11 57.7 6.6 65 16-84 1-65 (74)
59 cd04869 ACT_GcvR_2 ACT domains 98.3 6.4E-06 1.4E-10 56.4 8.7 62 16-84 1-68 (81)
60 PRK00194 hypothetical protein; 98.3 3.5E-06 7.5E-11 59.2 7.4 65 14-84 3-67 (90)
61 cd04875 ACT_F4HF-DF N-terminal 98.3 1.7E-05 3.6E-10 53.6 9.7 35 131-165 1-35 (74)
62 PRK06027 purU formyltetrahydro 98.1 1.9E-05 4.1E-10 67.3 9.3 48 128-175 5-54 (286)
63 PF13291 ACT_4: ACT domain; PD 98.1 2.5E-05 5.4E-10 53.5 7.9 48 129-176 6-55 (80)
64 PF13291 ACT_4: ACT domain; PD 98.0 8.7E-05 1.9E-09 50.8 8.7 63 15-84 7-71 (80)
65 TIGR00655 PurU formyltetrahydr 97.9 0.00011 2.3E-09 62.5 10.2 48 131-178 2-51 (280)
66 PRK06027 purU formyltetrahydro 97.9 7.1E-05 1.5E-09 63.8 8.9 66 13-84 5-72 (286)
67 PRK13010 purU formyltetrahydro 97.8 9.5E-05 2.1E-09 63.1 8.7 44 12-55 7-52 (289)
68 cd04887 ACT_MalLac-Enz ACT_Mal 97.8 0.0003 6.5E-09 47.1 9.5 61 17-84 2-63 (74)
69 TIGR00655 PurU formyltetrahydr 97.8 0.00016 3.5E-09 61.4 9.8 63 16-84 2-66 (280)
70 PRK13011 formyltetrahydrofolat 97.8 0.00014 3E-09 62.0 9.2 37 129-165 7-43 (286)
71 cd04905 ACT_CM-PDT C-terminal 97.8 0.00039 8.5E-09 47.6 9.6 51 130-180 2-53 (80)
72 PRK13010 purU formyltetrahydro 97.8 0.00018 3.9E-09 61.3 9.1 48 129-176 9-58 (289)
73 cd04887 ACT_MalLac-Enz ACT_Mal 97.7 0.0002 4.2E-09 48.0 7.5 45 132-176 2-47 (74)
74 cd04889 ACT_PDH-BS-like C-term 97.7 0.00017 3.7E-09 45.8 6.2 46 132-177 1-47 (56)
75 COG3830 ACT domain-containing 97.7 6.8E-05 1.5E-09 52.4 4.6 67 14-86 3-69 (90)
76 cd04908 ACT_Bt0572_1 N-termina 97.6 0.00028 6.1E-09 46.5 6.9 45 130-176 2-46 (66)
77 PRK13011 formyltetrahydrofolat 97.6 0.00049 1.1E-08 58.7 9.9 65 13-84 6-72 (286)
78 cd04886 ACT_ThrD-II-like C-ter 97.6 0.0011 2.5E-08 43.3 9.3 34 17-50 1-34 (73)
79 cd04879 ACT_3PGDH-like ACT_3PG 97.6 0.00075 1.6E-08 43.9 8.2 44 132-175 2-47 (71)
80 PRK06737 acetolactate synthase 97.6 0.00083 1.8E-08 45.9 8.3 46 130-175 3-48 (76)
81 COG0788 PurU Formyltetrahydrof 97.6 0.00026 5.7E-09 58.9 6.9 39 13-51 6-44 (287)
82 cd04909 ACT_PDH-BS C-terminal 97.6 0.0004 8.6E-09 45.9 6.6 47 130-176 2-50 (69)
83 cd04886 ACT_ThrD-II-like C-ter 97.6 0.00045 9.7E-09 45.3 6.9 34 132-165 1-34 (73)
84 PRK06737 acetolactate synthase 97.5 0.00064 1.4E-08 46.4 7.6 64 15-84 3-66 (76)
85 cd04931 ACT_PAH ACT domain of 97.5 0.0016 3.4E-08 46.0 9.9 71 128-200 13-84 (90)
86 cd04894 ACT_ACR-like_1 ACT dom 97.5 0.00055 1.2E-08 44.5 6.6 67 130-197 1-67 (69)
87 cd04902 ACT_3PGDH-xct C-termin 97.5 0.00057 1.2E-08 45.4 7.0 57 132-191 2-60 (73)
88 cd04888 ACT_PheB-BS C-terminal 97.5 0.00059 1.3E-08 45.8 7.1 46 131-176 2-48 (76)
89 CHL00100 ilvH acetohydroxyacid 97.5 0.00067 1.4E-08 53.6 8.4 37 130-166 3-39 (174)
90 PRK08178 acetolactate synthase 97.5 0.0011 2.3E-08 47.2 8.6 66 12-84 6-71 (96)
91 cd04877 ACT_TyrR N-terminal AC 97.5 0.00051 1.1E-08 46.3 6.7 35 131-165 2-36 (74)
92 PRK13562 acetolactate synthase 97.5 0.00084 1.8E-08 46.6 7.5 64 16-84 4-67 (84)
93 TIGR00119 acolac_sm acetolacta 97.4 0.0012 2.6E-08 51.3 9.0 63 130-197 2-66 (157)
94 PRK08178 acetolactate synthase 97.4 0.0015 3.4E-08 46.4 8.6 65 128-196 7-71 (96)
95 cd04878 ACT_AHAS N-terminal AC 97.4 0.0023 5E-08 41.7 9.1 60 131-195 2-63 (72)
96 PRK13562 acetolactate synthase 97.4 0.0013 2.8E-08 45.6 7.8 64 130-196 3-67 (84)
97 cd04889 ACT_PDH-BS-like C-term 97.4 0.00085 1.8E-08 42.5 6.5 45 17-61 1-46 (56)
98 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.4 0.0019 4.1E-08 43.0 8.4 36 131-166 2-37 (79)
99 cd04908 ACT_Bt0572_1 N-termina 97.4 0.0019 4.2E-08 42.4 8.2 45 15-61 2-46 (66)
100 cd04877 ACT_TyrR N-terminal AC 97.4 0.0016 3.4E-08 43.9 7.7 35 16-50 2-36 (74)
101 cd04903 ACT_LSD C-terminal ACT 97.4 0.0021 4.6E-08 41.8 8.3 33 132-164 2-34 (71)
102 cd04874 ACT_Af1403 N-terminal 97.3 0.0019 4.2E-08 42.2 8.0 36 131-166 2-37 (72)
103 cd04888 ACT_PheB-BS C-terminal 97.3 0.0029 6.4E-08 42.3 8.8 62 16-84 2-65 (76)
104 cd04901 ACT_3PGDH C-terminal A 97.3 0.00033 7.1E-09 46.1 3.9 44 132-175 2-45 (69)
105 CHL00100 ilvH acetohydroxyacid 97.3 0.0019 4.1E-08 51.1 8.7 66 15-86 3-68 (174)
106 cd04909 ACT_PDH-BS C-terminal 97.3 0.0039 8.4E-08 41.1 9.0 36 15-50 2-37 (69)
107 cd04882 ACT_Bt0572_2 C-termina 97.3 0.0012 2.5E-08 42.8 6.3 35 132-166 2-36 (65)
108 PRK11895 ilvH acetolactate syn 97.3 0.0026 5.6E-08 49.7 9.2 61 130-195 3-65 (161)
109 PRK11152 ilvM acetolactate syn 97.2 0.0033 7.2E-08 42.9 8.1 39 130-168 4-42 (76)
110 COG0788 PurU Formyltetrahydrof 97.2 0.002 4.3E-08 53.8 8.3 47 128-176 6-52 (287)
111 COG2716 GcvR Glycine cleavage 97.2 0.00023 4.9E-09 55.6 2.6 50 128-177 4-53 (176)
112 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.2 0.0045 9.8E-08 41.1 8.7 36 16-51 2-37 (79)
113 cd04880 ACT_AAAH-PDT-like ACT 97.1 0.0077 1.7E-07 40.5 9.3 49 132-180 2-51 (75)
114 cd04883 ACT_AcuB C-terminal AC 97.1 0.0044 9.5E-08 41.0 8.0 36 130-165 2-37 (72)
115 cd04874 ACT_Af1403 N-terminal 97.1 0.0059 1.3E-07 39.8 8.6 36 16-51 2-37 (72)
116 cd04904 ACT_AAAH ACT domain of 97.1 0.0038 8.2E-08 42.2 7.6 48 132-179 3-51 (74)
117 PRK08577 hypothetical protein; 97.1 0.0052 1.1E-07 46.5 9.1 49 128-176 55-105 (136)
118 cd04898 ACT_ACR-like_4 ACT dom 97.1 0.00072 1.6E-08 45.5 3.8 67 132-198 3-74 (77)
119 PRK11152 ilvM acetolactate syn 97.1 0.0047 1E-07 42.2 7.8 61 15-84 4-66 (76)
120 TIGR00119 acolac_sm acetolacta 97.1 0.0047 1E-07 48.0 8.8 61 16-84 3-65 (157)
121 PRK04435 hypothetical protein; 97.1 0.0083 1.8E-07 46.1 10.1 64 113-176 51-117 (147)
122 PRK11895 ilvH acetolactate syn 97.1 0.0055 1.2E-07 47.9 8.9 62 15-84 3-66 (161)
123 cd04878 ACT_AHAS N-terminal AC 97.0 0.012 2.6E-07 38.2 9.2 35 16-50 2-36 (72)
124 PRK08577 hypothetical protein; 97.0 0.016 3.6E-07 43.7 10.8 40 12-51 54-93 (136)
125 cd04879 ACT_3PGDH-like ACT_3PG 97.0 0.004 8.7E-08 40.3 6.5 44 17-60 2-47 (71)
126 cd04884 ACT_CBS C-terminal ACT 96.9 0.0081 1.7E-07 40.0 7.7 34 17-50 2-35 (72)
127 PRK11899 prephenate dehydratas 96.9 0.0066 1.4E-07 51.6 8.7 60 129-188 194-254 (279)
128 cd04929 ACT_TPH ACT domain of 96.8 0.0087 1.9E-07 40.6 7.4 50 132-181 3-53 (74)
129 cd04876 ACT_RelA-SpoT ACT dom 96.8 0.02 4.3E-07 36.1 8.8 35 17-51 1-35 (71)
130 cd04884 ACT_CBS C-terminal ACT 96.7 0.008 1.7E-07 40.0 6.6 34 132-165 2-35 (72)
131 cd02116 ACT ACT domains are co 96.7 0.0078 1.7E-07 36.2 6.1 35 132-166 1-35 (60)
132 PRK04435 hypothetical protein; 96.7 0.028 6E-07 43.2 10.1 73 6-84 61-134 (147)
133 cd02116 ACT ACT domains are co 96.7 0.026 5.7E-07 33.7 8.3 35 17-51 1-35 (60)
134 cd04903 ACT_LSD C-terminal ACT 96.6 0.027 5.9E-07 36.4 8.6 34 17-50 2-35 (71)
135 cd04876 ACT_RelA-SpoT ACT dom 96.6 0.012 2.7E-07 37.1 6.8 35 132-166 1-35 (71)
136 cd04871 ACT_PSP_2 ACT domains 96.6 0.0025 5.5E-08 44.2 3.5 69 131-204 1-79 (84)
137 PRK06635 aspartate kinase; Rev 96.6 0.11 2.3E-06 46.3 14.6 110 13-161 261-375 (404)
138 cd04905 ACT_CM-PDT C-terminal 96.6 0.056 1.2E-06 36.7 10.1 49 15-63 2-51 (80)
139 PF13710 ACT_5: ACT domain; PD 96.6 0.016 3.4E-07 38.0 6.9 31 138-168 1-31 (63)
140 cd04902 ACT_3PGDH-xct C-termin 96.5 0.0089 1.9E-07 39.4 5.8 44 17-60 2-47 (73)
141 cd04882 ACT_Bt0572_2 C-termina 96.5 0.009 1.9E-07 38.5 5.5 35 17-51 2-36 (65)
142 PF13710 ACT_5: ACT domain; PD 96.5 0.012 2.6E-07 38.6 6.0 56 23-84 1-56 (63)
143 cd04883 ACT_AcuB C-terminal AC 96.5 0.032 6.9E-07 36.7 8.3 36 15-50 2-37 (72)
144 TIGR00719 sda_beta L-serine de 96.5 0.023 5E-07 46.2 8.9 48 128-175 147-196 (208)
145 PRK07334 threonine dehydratase 96.5 0.02 4.4E-07 51.0 9.2 37 129-165 326-362 (403)
146 COG0077 PheA Prephenate dehydr 96.4 0.02 4.4E-07 48.5 8.3 55 129-183 194-249 (279)
147 cd04901 ACT_3PGDH C-terminal A 96.4 0.003 6.5E-08 41.4 2.6 39 17-55 2-40 (69)
148 cd04930 ACT_TH ACT domain of t 96.3 0.023 5E-07 41.9 7.2 53 129-181 41-94 (115)
149 PRK07334 threonine dehydratase 96.2 0.049 1.1E-06 48.6 10.3 63 15-84 327-394 (403)
150 PRK00227 glnD PII uridylyl-tra 96.2 0.028 6E-07 53.5 8.9 71 130-201 547-620 (693)
151 PRK11790 D-3-phosphoglycerate 96.1 0.012 2.6E-07 52.7 5.7 61 128-191 337-397 (409)
152 TIGR00656 asp_kin_monofn aspar 96.1 0.56 1.2E-05 41.6 16.2 109 12-161 258-372 (401)
153 PRK10622 pheA bifunctional cho 96.0 0.045 9.7E-07 48.7 8.8 57 129-185 297-354 (386)
154 cd04885 ACT_ThrD-I Tandem C-te 95.9 0.064 1.4E-06 35.3 7.3 61 17-84 1-61 (68)
155 PRK10872 relA (p)ppGpp synthet 95.8 0.1 2.2E-06 50.1 10.8 74 4-84 655-731 (743)
156 PRK10872 relA (p)ppGpp synthet 95.8 0.041 8.8E-07 52.7 8.0 48 129-176 666-715 (743)
157 PRK11092 bifunctional (p)ppGpp 95.7 0.07 1.5E-06 51.0 9.4 48 129-176 626-674 (702)
158 TIGR00691 spoT_relA (p)ppGpp s 95.6 0.083 1.8E-06 50.3 9.4 47 129-175 610-657 (683)
159 PRK06291 aspartate kinase; Pro 95.5 1.5 3.2E-05 39.9 16.8 112 12-164 319-436 (465)
160 PRK08210 aspartate kinase I; R 95.4 0.98 2.1E-05 40.2 15.2 100 12-159 269-372 (403)
161 cd04880 ACT_AAAH-PDT-like ACT 95.3 0.37 8E-06 32.1 9.5 47 17-63 2-49 (75)
162 cd04931 ACT_PAH ACT domain of 95.2 0.6 1.3E-05 32.8 10.6 55 7-63 7-64 (90)
163 COG4747 ACT domain-containing 95.2 0.16 3.5E-06 37.5 7.8 40 16-55 71-111 (142)
164 TIGR00691 spoT_relA (p)ppGpp s 95.2 0.22 4.7E-06 47.6 10.8 74 4-84 599-674 (683)
165 COG1707 ACT domain-containing 95.2 0.08 1.7E-06 41.4 6.5 48 16-63 4-51 (218)
166 COG1707 ACT domain-containing 95.2 0.078 1.7E-06 41.5 6.4 46 131-176 4-49 (218)
167 PRK11092 bifunctional (p)ppGpp 95.2 0.24 5.2E-06 47.4 11.1 74 4-84 615-690 (702)
168 COG0317 SpoT Guanosine polypho 95.0 0.099 2.1E-06 49.6 7.9 47 129-175 627-674 (701)
169 cd04885 ACT_ThrD-I Tandem C-te 95.0 0.1 2.2E-06 34.4 5.9 33 133-166 2-34 (68)
170 PLN02551 aspartokinase 95.0 1 2.3E-05 41.6 14.4 124 12-176 364-492 (521)
171 COG0317 SpoT Guanosine polypho 94.8 0.25 5.4E-06 47.0 9.9 74 4-84 616-691 (701)
172 PF13840 ACT_7: ACT domain ; P 94.6 0.079 1.7E-06 34.7 4.4 43 129-176 6-52 (65)
173 PRK09181 aspartate kinase; Val 94.4 2.6 5.6E-05 38.6 15.2 106 13-163 328-438 (475)
174 PRK06382 threonine dehydratase 94.4 0.15 3.2E-06 45.6 7.0 35 129-163 330-364 (406)
175 PRK08818 prephenate dehydrogen 94.3 0.15 3.1E-06 45.2 6.8 51 128-179 294-345 (370)
176 PRK09436 thrA bifunctional asp 94.2 2.1 4.5E-05 41.9 15.1 115 12-163 313-433 (819)
177 PF13840 ACT_7: ACT domain ; P 94.2 0.22 4.7E-06 32.6 5.9 47 11-62 3-53 (65)
178 PRK09034 aspartate kinase; Rev 94.1 4.3 9.4E-05 36.8 17.7 121 13-176 307-433 (454)
179 COG0527 LysC Aspartokinases [A 94.1 1.9 4.2E-05 39.1 13.7 119 12-176 305-429 (447)
180 TIGR01327 PGDH D-3-phosphoglyc 94.1 0.18 4E-06 46.6 7.2 62 129-191 451-512 (525)
181 PRK06545 prephenate dehydrogen 94.0 0.12 2.5E-06 45.4 5.6 50 127-176 288-337 (359)
182 PRK13581 D-3-phosphoglycerate 94.0 0.24 5.2E-06 45.8 7.9 63 128-191 451-513 (526)
183 cd04871 ACT_PSP_2 ACT domains 93.9 0.042 9.1E-07 38.1 2.1 30 16-45 1-31 (84)
184 cd04906 ACT_ThrD-I_1 First of 93.9 0.71 1.5E-05 31.7 8.3 61 16-84 3-64 (85)
185 PRK11898 prephenate dehydratas 93.7 0.37 8E-06 41.0 7.8 53 129-181 196-250 (283)
186 cd04929 ACT_TPH ACT domain of 93.6 0.98 2.1E-05 30.4 8.4 45 17-63 3-50 (74)
187 cd04904 ACT_AAAH ACT domain of 93.6 1.1 2.3E-05 30.0 8.6 45 17-63 3-50 (74)
188 COG0440 IlvH Acetolactate synt 93.5 0.31 6.7E-06 38.0 6.4 68 130-200 5-72 (163)
189 TIGR00719 sda_beta L-serine de 93.3 0.75 1.6E-05 37.3 8.8 44 12-55 146-191 (208)
190 PRK06349 homoserine dehydrogen 93.2 0.48 1.1E-05 42.6 8.3 51 127-177 346-396 (426)
191 PLN02317 arogenate dehydratase 93.2 0.64 1.4E-05 41.3 8.8 53 129-181 283-350 (382)
192 TIGR00657 asp_kinases aspartat 93.0 4.9 0.00011 36.2 14.4 109 12-161 300-413 (441)
193 PRK06382 threonine dehydratase 92.9 0.99 2.1E-05 40.3 9.8 66 12-84 328-398 (406)
194 PRK07431 aspartate kinase; Pro 92.8 8.4 0.00018 36.1 18.6 111 12-161 437-554 (587)
195 TIGR01268 Phe4hydrox_tetr phen 92.8 0.73 1.6E-05 41.5 8.6 53 129-181 16-69 (436)
196 KOG2663 Acetolactate synthase, 92.7 0.35 7.5E-06 40.3 5.9 48 14-61 77-126 (309)
197 cd04898 ACT_ACR-like_4 ACT dom 92.6 0.22 4.8E-06 33.7 3.9 66 17-84 3-72 (77)
198 PRK09084 aspartate kinase III; 92.6 5.4 0.00012 36.2 14.2 102 12-153 304-411 (448)
199 cd04906 ACT_ThrD-I_1 First of 92.6 0.68 1.5E-05 31.8 6.6 32 131-164 3-34 (85)
200 PRK06545 prephenate dehydrogen 92.5 0.65 1.4E-05 40.7 7.9 50 12-61 288-337 (359)
201 PRK08198 threonine dehydratase 92.4 1.8 4E-05 38.5 10.8 37 13-49 326-362 (404)
202 PRK11790 D-3-phosphoglycerate 92.4 0.35 7.6E-06 43.3 6.1 46 13-58 337-382 (409)
203 PRK09224 threonine dehydratase 92.3 9.1 0.0002 35.3 16.7 129 14-166 328-459 (504)
204 cd04932 ACT_AKiii-LysC-EC_1 AC 92.2 1.9 4.2E-05 29.0 8.3 38 136-177 11-48 (75)
205 COG0440 IlvH Acetolactate synt 92.2 0.73 1.6E-05 36.0 6.8 66 15-86 5-70 (163)
206 TIGR01127 ilvA_1Cterm threonin 92.0 0.73 1.6E-05 40.6 7.7 35 129-163 305-339 (380)
207 PRK11899 prephenate dehydratas 91.2 4 8.6E-05 34.7 11.0 64 14-84 194-258 (279)
208 TIGR01270 Trp_5_monoox tryptop 91.0 1.3 2.8E-05 40.2 8.1 54 128-181 30-85 (464)
209 cd04935 ACT_AKiii-DAPDC_1 ACT 90.6 2.7 5.9E-05 28.2 7.7 56 137-196 12-67 (75)
210 COG2150 Predicted regulator of 90.2 1.1 2.3E-05 34.9 5.9 34 130-163 96-129 (167)
211 TIGR01127 ilvA_1Cterm threonin 90.1 3.2 6.8E-05 36.6 9.9 34 15-48 306-339 (380)
212 PRK12483 threonine dehydratase 90.1 16 0.00035 33.9 15.6 137 13-172 344-482 (521)
213 PRK07431 aspartate kinase; Pro 90.0 17 0.00036 34.1 17.9 107 16-161 272-383 (587)
214 cd04930 ACT_TH ACT domain of t 89.6 3.3 7E-05 30.4 8.0 48 14-63 41-91 (115)
215 COG2150 Predicted regulator of 89.6 0.71 1.5E-05 35.9 4.6 34 13-46 94-127 (167)
216 PRK08198 threonine dehydratase 89.3 1.9 4.1E-05 38.3 7.9 36 129-164 327-362 (404)
217 cd04932 ACT_AKiii-LysC-EC_1 AC 88.9 5.3 0.00011 26.8 8.9 45 15-63 2-49 (75)
218 cd04935 ACT_AKiii-DAPDC_1 ACT 88.6 4.7 0.0001 27.0 7.7 56 22-84 12-67 (75)
219 cd04890 ACT_AK-like_1 ACT doma 88.6 3.4 7.4E-05 26.1 6.8 38 22-63 11-48 (62)
220 COG4492 PheB ACT domain-contai 88.5 3 6.4E-05 31.5 7.0 56 122-177 64-121 (150)
221 PRK08818 prephenate dehydrogen 88.4 1.6 3.4E-05 38.7 6.6 49 14-63 295-344 (370)
222 PRK08961 bifunctional aspartat 88.3 15 0.00033 36.2 13.9 104 12-157 320-429 (861)
223 COG0077 PheA Prephenate dehydr 87.9 4.4 9.6E-05 34.5 8.7 63 13-84 193-258 (279)
224 PRK06349 homoserine dehydrogen 87.7 4 8.7E-05 36.7 8.9 51 13-63 347-397 (426)
225 COG3978 Acetolactate synthase 87.6 5.8 0.00013 27.2 7.4 48 129-176 3-52 (86)
226 cd04922 ACT_AKi-HSDH-ThrA_2 AC 87.2 5.5 0.00012 25.1 8.7 44 131-176 3-49 (66)
227 cd04933 ACT_AK1-AT_1 ACT domai 87.1 3.4 7.3E-05 28.1 6.3 37 137-177 12-48 (78)
228 cd04912 ACT_AKiii-LysC-EC-like 86.8 7.1 0.00015 25.9 8.1 31 131-161 3-36 (75)
229 PLN02550 threonine dehydratase 86.7 28 0.00062 32.8 14.1 130 15-168 418-548 (591)
230 cd04912 ACT_AKiii-LysC-EC-like 86.6 7.2 0.00016 25.9 8.7 44 15-62 2-48 (75)
231 PRK09466 metL bifunctional asp 86.4 33 0.00072 33.7 14.8 106 12-161 315-426 (810)
232 cd04891 ACT_AK-LysC-DapG-like_ 86.3 2.8 6.1E-05 25.6 5.3 41 136-176 8-49 (61)
233 PRK13581 D-3-phosphoglycerate 86.0 3.2 6.9E-05 38.5 7.5 40 13-52 451-490 (526)
234 cd04913 ACT_AKii-LysC-BS-like_ 85.7 2.8 6E-05 27.0 5.2 41 136-176 9-50 (75)
235 cd04868 ACT_AK-like ACT domain 85.4 2.2 4.7E-05 25.8 4.4 43 132-176 3-48 (60)
236 PRK10820 DNA-binding transcrip 85.2 1.2 2.6E-05 41.1 4.3 35 131-165 2-36 (520)
237 PRK08526 threonine dehydratase 84.7 6.9 0.00015 35.0 8.8 38 129-166 326-363 (403)
238 cd04919 ACT_AK-Hom3_2 ACT doma 83.8 7 0.00015 24.7 6.4 44 131-176 3-49 (66)
239 PRK10622 pheA bifunctional cho 83.7 11 0.00023 33.7 9.5 50 14-67 297-349 (386)
240 cd04934 ACT_AK-Hom3_1 CT domai 83.3 8.9 0.00019 25.6 6.9 53 138-196 13-65 (73)
241 cd04937 ACT_AKi-DapG-BS_2 ACT 83.2 3.7 7.9E-05 26.3 4.8 28 131-158 3-33 (64)
242 cd04890 ACT_AK-like_1 ACT doma 83.1 8.6 0.00019 24.1 6.6 37 137-177 11-47 (62)
243 KOG2663 Acetolactate synthase, 82.9 1.8 3.9E-05 36.2 3.9 37 128-164 76-112 (309)
244 PRK08526 threonine dehydratase 82.8 15 0.00033 32.8 10.1 66 13-84 325-394 (403)
245 cd04913 ACT_AKii-LysC-BS-like_ 82.6 7.3 0.00016 24.9 6.2 27 21-47 9-35 (75)
246 cd04891 ACT_AK-LysC-DapG-like_ 82.5 8.6 0.00019 23.3 6.6 27 21-47 8-34 (61)
247 cd04921 ACT_AKi-HSDH-ThrA-like 81.1 13 0.00029 24.5 7.4 66 131-201 3-71 (80)
248 PRK00907 hypothetical protein; 80.1 13 0.00028 26.2 6.9 65 13-84 16-84 (92)
249 TIGR01327 PGDH D-3-phosphoglyc 79.9 5.3 0.00011 37.0 6.4 39 14-52 451-489 (525)
250 cd04933 ACT_AK1-AT_1 ACT domai 79.5 12 0.00026 25.4 6.5 39 21-63 11-49 (78)
251 PRK08841 aspartate kinase; Val 79.3 38 0.00083 30.2 11.4 33 129-161 318-350 (392)
252 cd04924 ACT_AK-Arch_2 ACT doma 79.1 13 0.00028 23.2 8.6 44 131-176 3-49 (66)
253 cd04937 ACT_AKi-DapG-BS_2 ACT 78.9 6 0.00013 25.3 4.7 28 16-43 3-33 (64)
254 PF05088 Bac_GDH: Bacterial NA 78.2 19 0.00041 37.8 10.0 77 11-88 486-567 (1528)
255 TIGR02079 THD1 threonine dehyd 78.1 28 0.00061 31.1 10.3 66 13-84 324-390 (409)
256 TIGR01124 ilvA_2Cterm threonin 77.9 58 0.0013 30.1 16.3 126 13-164 324-453 (499)
257 COG4492 PheB ACT domain-contai 77.6 22 0.00047 26.9 7.8 42 12-53 70-111 (150)
258 cd04934 ACT_AK-Hom3_1 CT domai 76.4 20 0.00042 23.9 7.1 53 23-84 13-65 (73)
259 cd04922 ACT_AKi-HSDH-ThrA_2 AC 76.4 16 0.00035 22.8 8.9 31 16-46 3-36 (66)
260 cd04892 ACT_AK-like_2 ACT doma 73.9 17 0.00038 22.1 8.1 43 132-176 3-48 (65)
261 PRK08639 threonine dehydratase 73.3 37 0.00081 30.4 9.8 66 13-84 335-401 (420)
262 cd04868 ACT_AK-like ACT domain 73.2 17 0.00037 21.6 6.6 31 16-46 2-35 (60)
263 cd04911 ACT_AKiii-YclM-BS_1 AC 71.7 14 0.0003 25.1 5.1 60 137-202 12-71 (76)
264 TIGR01270 Trp_5_monoox tryptop 71.4 27 0.00059 31.9 8.3 49 13-63 30-82 (464)
265 PRK06635 aspartate kinase; Rev 71.4 36 0.00078 30.1 9.2 34 12-45 338-374 (404)
266 PLN02317 arogenate dehydratase 71.0 47 0.001 29.6 9.6 35 14-50 283-317 (382)
267 cd04918 ACT_AK1-AT_2 ACT domai 70.4 23 0.0005 22.6 5.9 34 131-164 3-38 (65)
268 cd04924 ACT_AK-Arch_2 ACT doma 70.2 23 0.00051 22.0 7.5 32 16-47 3-37 (66)
269 TIGR02079 THD1 threonine dehyd 69.0 44 0.00095 29.9 9.2 35 129-163 325-359 (409)
270 cd04923 ACT_AK-LysC-DapG-like_ 69.0 24 0.00052 21.6 7.8 30 132-161 3-35 (63)
271 PRK11898 prephenate dehydratas 68.9 55 0.0012 27.8 9.4 50 14-67 196-249 (283)
272 PF05088 Bac_GDH: Bacterial NA 68.6 45 0.00098 35.1 10.1 37 125-161 13-49 (1528)
273 PRK08639 threonine dehydratase 68.1 43 0.00094 30.0 9.0 35 129-163 336-370 (420)
274 COG3978 Acetolactate synthase 68.1 36 0.00079 23.4 7.7 64 14-86 3-68 (86)
275 cd04914 ACT_AKi-DapG-BS_1 ACT 68.1 11 0.00024 24.5 4.0 30 16-45 3-33 (67)
276 PRK12483 threonine dehydratase 68.0 35 0.00075 31.7 8.5 39 129-169 345-383 (521)
277 TIGR01268 Phe4hydrox_tetr phen 67.8 54 0.0012 29.8 9.4 48 14-63 16-66 (436)
278 COG3283 TyrR Transcriptional r 67.8 5.8 0.00013 35.3 3.2 36 131-166 2-37 (511)
279 PRK14646 hypothetical protein; 66.8 57 0.0012 25.2 9.4 61 141-201 8-69 (155)
280 cd04914 ACT_AKi-DapG-BS_1 ACT 66.5 12 0.00025 24.4 3.8 42 131-176 3-45 (67)
281 cd04916 ACT_AKiii-YclM-BS_2 AC 66.3 29 0.00063 21.6 8.5 44 131-176 3-49 (66)
282 cd04936 ACT_AKii-LysC-BS-like_ 65.2 29 0.00063 21.2 7.9 41 132-176 3-46 (63)
283 cd04892 ACT_AK-like_2 ACT doma 65.2 28 0.00061 21.1 6.5 31 16-46 2-35 (65)
284 cd04921 ACT_AKi-HSDH-ThrA-like 64.2 38 0.00082 22.2 7.7 34 15-48 2-38 (80)
285 PRK00907 hypothetical protein; 64.2 34 0.00074 24.1 6.0 61 130-194 18-82 (92)
286 cd04923 ACT_AK-LysC-DapG-like_ 63.9 31 0.00067 21.1 7.4 31 16-46 2-35 (63)
287 PRK09224 threonine dehydratase 63.6 66 0.0014 29.7 9.5 43 129-173 328-370 (504)
288 PRK02047 hypothetical protein; 63.3 49 0.0011 23.1 7.3 66 12-84 14-83 (91)
289 PRK10820 DNA-binding transcrip 63.1 14 0.00031 34.1 5.1 36 16-51 2-37 (520)
290 PRK14634 hypothetical protein; 63.1 68 0.0015 24.7 9.0 62 140-201 7-69 (155)
291 cd04919 ACT_AK-Hom3_2 ACT doma 62.9 35 0.00076 21.3 8.6 32 16-47 3-37 (66)
292 PTZ00324 glutamate dehydrogena 62.7 68 0.0015 32.3 9.7 63 2-64 217-284 (1002)
293 cd04936 ACT_AKii-LysC-BS-like_ 62.2 34 0.00073 20.9 7.3 31 16-46 2-35 (63)
294 PRK14637 hypothetical protein; 62.1 70 0.0015 24.6 8.9 60 140-200 8-67 (151)
295 PRK14646 hypothetical protein; 61.7 72 0.0016 24.6 10.3 60 26-87 8-67 (155)
296 TIGR00656 asp_kin_monofn aspar 60.0 50 0.0011 29.2 7.8 34 11-44 334-370 (401)
297 COG2061 ACT-domain-containing 58.9 67 0.0015 25.0 7.2 37 129-165 5-41 (170)
298 PRK14639 hypothetical protein; 57.5 82 0.0018 23.8 8.3 56 146-202 3-58 (140)
299 PF02576 DUF150: Uncharacteris 56.0 78 0.0017 23.7 7.3 54 146-200 2-55 (141)
300 PRK00341 hypothetical protein; 55.8 64 0.0014 22.6 6.2 65 12-84 14-83 (91)
301 TIGR01124 ilvA_2Cterm threonin 55.3 89 0.0019 28.9 8.8 62 128-195 324-386 (499)
302 cd04915 ACT_AK-Ectoine_2 ACT d 54.5 54 0.0012 21.0 5.4 29 15-43 3-33 (66)
303 cd04915 ACT_AK-Ectoine_2 ACT d 54.3 22 0.00047 23.0 3.5 33 131-163 4-38 (66)
304 PRK14636 hypothetical protein; 54.2 1.1E+02 0.0023 24.2 9.0 63 139-201 4-67 (176)
305 COG3603 Uncharacterized conser 54.2 88 0.0019 23.2 7.0 39 11-51 60-101 (128)
306 PRK14636 hypothetical protein; 52.1 1.2E+02 0.0025 24.0 9.8 62 24-87 4-65 (176)
307 PRK14638 hypothetical protein; 51.8 1.1E+02 0.0023 23.5 9.1 60 142-201 10-69 (150)
308 cd04916 ACT_AKiii-YclM-BS_2 AC 49.5 61 0.0013 20.0 8.4 32 16-47 3-37 (66)
309 PRK14645 hypothetical protein; 49.2 1.2E+02 0.0026 23.4 9.2 62 140-201 9-71 (154)
310 PLN02550 threonine dehydratase 48.7 56 0.0012 30.9 6.4 34 129-164 417-450 (591)
311 PRK14640 hypothetical protein; 48.2 1.2E+02 0.0027 23.2 8.9 58 142-201 8-66 (152)
312 TIGR00657 asp_kinases aspartat 48.0 1.1E+02 0.0023 27.6 8.0 36 11-46 375-413 (441)
313 PRK00341 hypothetical protein; 47.9 68 0.0015 22.4 5.4 31 130-161 18-48 (91)
314 PRK14634 hypothetical protein; 47.3 1.3E+02 0.0028 23.2 10.4 61 25-87 7-67 (155)
315 PRK14645 hypothetical protein; 47.0 1.3E+02 0.0029 23.1 10.2 63 23-87 7-69 (154)
316 PRK08210 aspartate kinase I; R 46.1 44 0.00096 29.6 5.2 35 129-163 271-306 (403)
317 COG3603 Uncharacterized conser 45.3 25 0.00055 26.1 2.9 33 130-162 64-99 (128)
318 KOG0456 Aspartate kinase [Amin 45.0 1E+02 0.0022 27.9 7.1 31 13-43 392-425 (559)
319 cd04917 ACT_AKiii-LysC-EC_2 AC 44.7 52 0.0011 20.7 4.1 41 131-176 3-47 (64)
320 PRK15385 magnesium transport p 44.5 1.8E+02 0.0039 24.0 8.9 64 129-194 142-209 (225)
321 PRK00092 ribosome maturation p 43.4 1.5E+02 0.0032 22.7 9.0 59 142-202 9-68 (154)
322 cd04918 ACT_AK1-AT_2 ACT domai 42.4 88 0.0019 19.8 8.7 44 16-61 3-48 (65)
323 cd04920 ACT_AKiii-DAPDC_2 ACT 41.6 90 0.002 19.7 7.8 27 131-157 2-31 (63)
324 COG2061 ACT-domain-containing 40.4 38 0.00082 26.3 3.3 31 14-44 5-35 (170)
325 PRK02047 hypothetical protein; 40.3 1.2E+02 0.0026 21.1 5.7 33 130-162 17-49 (91)
326 PRK05925 aspartate kinase; Pro 40.2 2.9E+02 0.0062 25.1 14.0 116 13-176 299-417 (440)
327 PF09383 NIL: NIL domain; Int 39.0 1.1E+02 0.0024 20.0 8.1 63 15-84 5-68 (76)
328 PRK06291 aspartate kinase; Pro 38.9 1.1E+02 0.0025 27.7 6.8 46 129-176 321-369 (465)
329 cd07247 SgaA_N_like N-terminal 38.4 1.3E+02 0.0028 20.5 6.4 51 12-69 60-110 (114)
330 PRK09084 aspartate kinase III; 37.5 2.1E+02 0.0045 26.0 8.2 46 128-177 305-353 (448)
331 PRK04998 hypothetical protein; 36.2 1.4E+02 0.0031 20.5 7.1 66 12-84 13-80 (88)
332 PLN02551 aspartokinase 35.5 1.5E+02 0.0031 27.7 7.0 49 12-62 443-493 (521)
333 PRK09034 aspartate kinase; Rev 35.0 3.2E+02 0.0069 24.8 9.0 36 12-47 383-421 (454)
334 PF04359 DUF493: Protein of un 34.5 67 0.0014 21.8 3.6 66 11-83 7-76 (85)
335 PF06543 Lac_bphage_repr: Lact 33.0 61 0.0013 19.9 2.7 21 175-195 24-44 (49)
336 PRK13431 F0F1 ATP synthase sub 33.0 1.6E+02 0.0035 23.3 6.0 51 136-200 86-136 (180)
337 PRK08841 aspartate kinase; Val 32.8 78 0.0017 28.2 4.6 32 12-43 316-347 (392)
338 COG1255 Uncharacterized protei 32.0 84 0.0018 23.3 3.8 38 140-177 22-59 (129)
339 cd04911 ACT_AKiii-YclM-BS_1 AC 31.2 1.7E+02 0.0036 19.8 6.3 56 22-86 12-67 (76)
340 PRK14647 hypothetical protein; 30.8 2.5E+02 0.0054 21.6 9.2 58 142-201 10-68 (159)
341 PF07485 DUF1529: Domain of Un 30.0 2.3E+02 0.005 21.0 6.3 51 142-194 69-120 (123)
342 COG3283 TyrR Transcriptional r 28.3 63 0.0014 29.0 3.1 32 16-47 2-33 (511)
343 PRK08961 bifunctional aspartat 27.8 3.1E+02 0.0068 27.1 8.2 33 129-161 322-357 (861)
344 COG0245 IspF 2C-methyl-D-eryth 27.7 1.6E+02 0.0035 22.9 4.9 62 132-205 66-127 (159)
345 KOG1250 Threonine/serine dehyd 27.7 1.4E+02 0.003 27.1 5.1 70 11-86 370-442 (457)
346 cd07261 Glo_EDI_BRP_like_11 Th 27.7 1.9E+02 0.0041 19.7 5.2 52 13-69 59-110 (114)
347 cd04907 ACT_ThrD-I_2 Second of 27.6 2E+02 0.0043 19.4 7.9 42 131-173 3-44 (81)
348 COG2921 Uncharacterized conser 27.0 2.3E+02 0.0049 19.9 6.6 66 12-84 13-82 (90)
349 cd07253 Glo_EDI_BRP_like_2 Thi 26.5 2.1E+02 0.0045 19.5 5.3 50 16-69 70-120 (125)
350 PF14226 DIOX_N: non-haem diox 26.4 78 0.0017 22.3 2.9 44 136-198 10-53 (116)
351 PRK08474 F0F1 ATP synthase sub 25.8 2.6E+02 0.0057 21.7 6.1 52 135-200 78-132 (176)
352 COG2902 NAD-specific glutamate 25.5 1E+02 0.0022 32.2 4.4 44 1-44 73-118 (1592)
353 TIGR00151 ispF 2C-methyl-D-ery 24.5 2.8E+02 0.0061 21.5 5.8 57 135-203 68-124 (155)
354 cd00554 MECDP_synthase MECDP_s 24.5 2.8E+02 0.0061 21.4 5.8 57 135-203 68-124 (153)
355 PF14085 DUF4265: Domain of un 24.1 2.8E+02 0.0062 20.0 5.8 37 9-45 47-84 (117)
356 PF14830 Haemocyan_bet_s: Haem 23.1 59 0.0013 23.4 1.7 38 138-184 53-91 (103)
357 PRK09436 thrA bifunctional asp 23.0 3E+02 0.0064 27.2 7.0 36 12-47 394-432 (819)
358 PRK14630 hypothetical protein; 22.9 3.4E+02 0.0074 20.5 8.7 62 138-201 6-68 (143)
359 PLN02997 flavonol synthase 22.8 2.3E+02 0.0051 24.4 5.7 51 132-201 36-86 (325)
360 cd04910 ACT_AK-Ectoine_1 ACT d 22.8 2.4E+02 0.0052 18.7 8.1 58 17-86 4-64 (71)
361 cd07245 Glo_EDI_BRP_like_9 Thi 22.8 2.3E+02 0.005 18.6 4.8 48 14-69 65-112 (114)
362 PLN02639 oxidoreductase, 2OG-F 22.2 2.4E+02 0.0052 24.4 5.7 50 131-199 40-89 (337)
363 PRK14643 hypothetical protein; 22.1 3.8E+02 0.0083 20.8 9.3 61 142-202 11-74 (164)
364 PRK14632 hypothetical protein; 21.7 4E+02 0.0086 20.9 8.8 58 142-202 10-68 (172)
365 PRK09181 aspartate kinase; Val 21.1 3.7E+02 0.0081 24.7 6.9 33 12-44 400-434 (475)
366 COG0527 LysC Aspartokinases [A 20.8 2.2E+02 0.0048 25.9 5.3 47 128-176 306-355 (447)
367 PRK13434 F0F1 ATP synthase sub 20.5 4E+02 0.0087 20.8 6.2 53 134-200 78-133 (184)
368 PRK00084 ispF 2-C-methyl-D-ery 20.2 3.7E+02 0.0081 20.9 5.7 56 136-203 72-127 (159)
No 1
>PRK05007 PII uridylyl-transferase; Provisional
Probab=100.00 E-value=2.5e-33 Score=267.89 Aligned_cols=190 Identities=24% Similarity=0.308 Sum_probs=167.4
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIR 79 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~ 79 (208)
.|.|.+++....+.++|+|+++||||||++||++|+.+|++|++|+|+|+++ .++|+|+|++.+ |.++. ++++++|+
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~-g~~~~-~~~~~~I~ 765 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPD-GSPLS-QDRHQVIR 765 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCC-CCCCC-HHHHHHHH
Confidence 4788899999999999999999999999999999999999999999999988 689999999996 88874 57889999
Q ss_pred HHHHHhhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501 80 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE 158 (208)
Q Consensus 80 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~ 158 (208)
+.|.++|.+..+. .. . .+ +.+++.++|.+|++|.|+|+.+ .+|+|+|.+.|||||||+|+++|.++|++|.
T Consensus 766 ~~L~~aL~~~~~~-~~-~-----~~-~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~ 837 (884)
T PRK05007 766 KALEQALTQSSPQ-PP-K-----PR-RLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLH 837 (884)
T ss_pred HHHHHHHcCCCCC-cc-c-----cc-ccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEE
Confidence 9999999763211 11 1 12 2344556889999999999875 5999999999999999999999999999999
Q ss_pred EEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 028501 159 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 159 ~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
+|+|+|.|+++.|+|||++ +|.|++++.++.|+++|+++|+.
T Consensus 838 ~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 838 GARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred EEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998 89999987889999999999854
No 2
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=100.00 E-value=4.4e-33 Score=265.36 Aligned_cols=188 Identities=18% Similarity=0.267 Sum_probs=164.6
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe-cCCeeEEEEEEeeCCCCCCCCCHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSVKQTKFFITRLDTGRKVEDPDLLERIR 79 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t-~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~ 79 (208)
.|.|.+++..+.+.++|+|+++||||||++|+++|+.+|++|++|+|+| .++.++|+|+|++.+ |.++. ++++++|+
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~-g~~~~-~~~~~~l~ 741 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELN-GKLLE-FDRRRQLE 741 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCC-CCCCC-HHHHHHHH
Confidence 4788899999999999999999999999999999999999999999999 566799999999996 98884 57889999
Q ss_pred HHHHHhhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501 80 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE 158 (208)
Q Consensus 80 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~ 158 (208)
+.|.++|.+.. ... ..++.+++.++|.+|++|.|+|+.+ .+|+|+|.+.|||||||+|+++|.++|++|+
T Consensus 742 ~~L~~aL~~~~-~~~--------~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~ 812 (854)
T PRK01759 742 QALTKALNTNK-LKK--------LNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLL 812 (854)
T ss_pred HHHHHHHcCCC-Ccc--------hhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEE
Confidence 99999997632 110 0111223445788999999999876 4999999999999999999999999999999
Q ss_pred EEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 028501 159 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR 199 (208)
Q Consensus 159 ~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~ 199 (208)
.|+|+|.|+++.|+|||++ +|.|++++.++.|+++|+++|.
T Consensus 813 ~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l~ 854 (854)
T PRK01759 813 NAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNLS 854 (854)
T ss_pred EEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHhC
Confidence 9999999999999999998 8999998877999999998874
No 3
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.98 E-value=1.5e-30 Score=248.74 Aligned_cols=191 Identities=23% Similarity=0.321 Sum_probs=165.0
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec-CCeeEEEEEEeeCCCCCCCCCHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE-GSVKQTKFFITRLDTGRKVEDPDLLERIR 79 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~-~~~~~d~F~v~~~~~g~~~~~~~~~~~l~ 79 (208)
.|.|.+.+....+.++|+|+++||||||++||++|+.+|+||++|+|+|+ ++.++|+|+|++.+ |.++.+++++++|+
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~-g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF-GSPPAAERVFQELL 733 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC-CCCCCcHHHHHHHH
Confidence 37888888777899999999999999999999999999999999999955 56789999999997 88887777899999
Q ss_pred HHHHHhhccCCCCchhhhhccccccCC-CCCcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCccE
Q 028501 80 LTIINNLLKYHPESSEQLAMGEAFGIK-APEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV 157 (208)
Q Consensus 80 ~~L~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I 157 (208)
+.|.++|.+... ....+. .++ .+++.++|.+|++|.|+|+.+ .+|+++|.|.||||||++|+++|+++|++|
T Consensus 734 ~~L~~~L~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i 807 (850)
T TIGR01693 734 QGLVDVLAGLAK-DPDTIS-----ARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSI 807 (850)
T ss_pred HHHHHHHcCCCc-cccccc-----cccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeE
Confidence 999999976321 111111 111 234456788999999999875 599999999999999999999999999999
Q ss_pred EEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 028501 158 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 198 (208)
Q Consensus 158 ~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l 198 (208)
.++++.|.|+++.|+|++++ .|.|++++.++.|+++|..+|
T Consensus 808 ~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 808 QSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred EEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998 899999988899999998876
No 4
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.1e-30 Score=234.19 Aligned_cols=190 Identities=28% Similarity=0.335 Sum_probs=168.8
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIR 79 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~ 79 (208)
+|+|.+......+.++|+|+++|+|.||+.+|+++...|+||++|+|+|+.++ ++|+|+|++++ |.++. +++...++
T Consensus 671 ~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~-g~~~~-~dr~~~~~ 748 (867)
T COG2844 671 KPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPD-GFPVE-EDRRAALR 748 (867)
T ss_pred CcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCC-CCccc-hhHHHHHH
Confidence 57888888888899999999999999999999999999999999999999886 89999999996 88776 67888888
Q ss_pred HHHHHhhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCC-eEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501 80 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVE 158 (208)
Q Consensus 80 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~-~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~ 158 (208)
..|.+++.++.. .+ + .+++.+++.++|+++|+|.|.+..++ .++|+|.+.||||||++++++|++++++|.
T Consensus 749 ~~l~~~l~s~~~--~~--~----~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~ 820 (867)
T COG2844 749 GELIEALLSGKA--QP--P----RRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLH 820 (867)
T ss_pred HHHHHHHhcCCC--CC--c----cccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhccccee
Confidence 888888876422 11 1 34566777789999999999998765 999999999999999999999999999999
Q ss_pred EEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 028501 159 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 159 ~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
+|+|+|.|++++|+|+|++ .|.+++++.++.+.+.|.+++..
T Consensus 821 ~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~ 863 (867)
T COG2844 821 SAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLP 863 (867)
T ss_pred eeeeccccccceeEEEEeccccccCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998 89999999999999999888754
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=3.8e-29 Score=239.25 Aligned_cols=194 Identities=22% Similarity=0.354 Sum_probs=164.3
Q ss_pred CEEEEeecCC---CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCC-CHHHHH
Q 028501 2 PHVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVE-DPDLLE 76 (208)
Q Consensus 2 p~V~~~~~~~---~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~-~~~~~~ 76 (208)
|.|.+.+... .+.++|+|+++||||||+++|++|+.+|+||++|+|+|+++ +++|+|+|++.+ |.++. ++++++
T Consensus 689 ~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~-g~~~~~~~~r~~ 767 (895)
T PRK00275 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD-GEPIGDNPARIE 767 (895)
T ss_pred CeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC-CCCccchHHHHH
Confidence 6677766665 58899999999999999999999999999999999998876 578999999997 88753 457899
Q ss_pred HHHHHHHHhhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCc
Q 028501 77 RIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNV 155 (208)
Q Consensus 77 ~l~~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i 155 (208)
+|++.|.++|.+.. .....+ .++.++..++|.+++.|.|+++.+ .+|+|+|.+.||||||++|+++|+.+|+
T Consensus 768 ~i~~~L~~~L~~~~-~~~~~~------~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l 840 (895)
T PRK00275 768 QIREGLTEALRNPD-DYPTII------QRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDL 840 (895)
T ss_pred HHHHHHHHHHcCCC-ccchhh------hhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCC
Confidence 99999999997632 111122 123344556788999999998764 6999999999999999999999999999
Q ss_pred cEEEEEEEecCCeEEEEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCC
Q 028501 156 DVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPET 203 (208)
Q Consensus 156 ~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~-~~~~l~~~l~~~l~~~~~ 203 (208)
||.+|+|.|.++++.|+|+|++ +|.+++++ .++.|+++|..+|..+..
T Consensus 841 ~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~ 890 (895)
T PRK00275 841 SLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNE 890 (895)
T ss_pred EEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999998 89999774 678999999999966543
No 6
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=1.5e-28 Score=234.09 Aligned_cols=188 Identities=21% Similarity=0.232 Sum_probs=158.7
Q ss_pred CEEEEee-cCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHH
Q 028501 2 PHVLIDQ-DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIR 79 (208)
Q Consensus 2 p~V~~~~-~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~ 79 (208)
|.|.+.. ....+.++|+|+++|+||||++||++|+.+|+||++|+|+|+.+ .++|+|+|.+++ |.. +.++.+++
T Consensus 677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~-~~~---~~~~~~i~ 752 (869)
T PRK04374 677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQD-TYA---DGDPQRLA 752 (869)
T ss_pred CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCC-CCC---hHHHHHHH
Confidence 5565544 66778999999999999999999999999999999999999765 589999999986 663 35678899
Q ss_pred HHHHHhhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501 80 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE 158 (208)
Q Consensus 80 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~ 158 (208)
+.|.++|.+.. ... .+. .++.+++.++|.+||+|.|+++.+ .+++|+|.+.||||||++|+++|+.+|+||.
T Consensus 753 ~~l~~~l~~~~-~~~-~~~-----~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~ 825 (869)
T PRK04374 753 AALRQVLAGDL-QKV-RPA-----RRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVH 825 (869)
T ss_pred HHHHHHHcCCC-Ccc-ccc-----cccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEE
Confidence 99999997631 111 121 222344556899999999998764 6999999999999999999999999999999
Q ss_pred EEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 028501 159 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 159 ~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
+|+|+|.++++.|+|+|++ +|.+++++.++.|+++|+++|+.
T Consensus 826 ~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~~ 868 (869)
T PRK04374 826 DARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLDP 868 (869)
T ss_pred EeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhcc
Confidence 9999999999999999998 78998887679999999998853
No 7
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=3.4e-28 Score=234.16 Aligned_cols=196 Identities=21% Similarity=0.307 Sum_probs=165.6
Q ss_pred CEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501 2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRL 80 (208)
Q Consensus 2 p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~ 80 (208)
+.|.+.+....+.++|+|+++||||||++||++|+.+|+||.+|+|+|+.+ .++|+|+|++.+ |.+..+++++++|++
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~-g~~~~~~~~~~~l~~ 798 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF-GRDEDEPRRLARLAK 798 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCC-CCCCCCHHHHHHHHH
Confidence 567788888889999999999999999999999999999999999999655 579999999986 887767789999999
Q ss_pred HHHHhhccCCCCchhhhhccccccCCCC-CcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501 81 TIINNLLKYHPESSEQLAMGEAFGIKAP-EKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE 158 (208)
Q Consensus 81 ~L~~~l~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~ 158 (208)
.|..++.+.. .....+. .+..+ ++.++|.++|.|.|+++.+ .+++|+|.+.||||||++|+++|+++|+||.
T Consensus 799 ~L~~~l~~~~-~~~~~~~-----~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~ 872 (931)
T PRK05092 799 AIEDALSGEV-RLPEALA-----KRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIA 872 (931)
T ss_pred HHHHHHcCCC-CCccccc-----cccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEE
Confidence 9999886521 1111211 11122 2345788999999999865 5899999999999999999999999999999
Q ss_pred EEEEEecCCeEEEEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCC
Q 028501 159 SAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETD 204 (208)
Q Consensus 159 ~a~i~t~~~~~~~~f~v~~-~g~~~~~~-~~~~l~~~l~~~l~~~~~~ 204 (208)
+|+|.|.++++.|+|+|++ +|.++.++ .++.|+++|.++|..+..+
T Consensus 873 ~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~~ 920 (931)
T PRK05092 873 SAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAE 920 (931)
T ss_pred EEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCcccc
Confidence 9999999999999999998 89999875 6789999999999765544
No 8
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1.2e-27 Score=226.11 Aligned_cols=184 Identities=21% Similarity=0.215 Sum_probs=153.9
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL 80 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~ 80 (208)
.|.|.+.+.. .+.++|+|+++||||||++||++|+.+||||++|+|+|.++.++|+|+|.+++ |.+. .++++++
T Consensus 587 ~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~-~~~~----~~~~l~~ 660 (774)
T PRK03381 587 GVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRF-GSPP----DAALLRQ 660 (774)
T ss_pred CCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC-CCcc----hHHHHHH
Confidence 4778888877 89999999999999999999999999999999999999777899999999886 7643 3588999
Q ss_pred HHHHhhccCCCCchhhhhccccccCC-CCCcccCCccccEEEEecCCC-CeEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501 81 TIINNLLKYHPESSEQLAMGEAFGIK-APEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE 158 (208)
Q Consensus 81 ~L~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~V~~~~~~~-~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~ 158 (208)
.|++++.+.. .....+..+ .+. .+++.++|..|+.|.++++.+ .+++|+|.+.||||||++|+++|+++|+||.
T Consensus 661 ~L~~~L~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~ 736 (774)
T PRK03381 661 DLRRALDGDL-DVLARLAAR---EAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVR 736 (774)
T ss_pred HHHHHHcCCC-chhhhhhcc---cccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEE
Confidence 9999887631 111122110 011 123445788999999988764 5899999999999999999999999999999
Q ss_pred EEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHH
Q 028501 159 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLR 195 (208)
Q Consensus 159 ~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~ 195 (208)
+|+|.|.|+++.|+|+|++ +|.+++++ ++.|+++|+
T Consensus 737 ~AkI~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~ 773 (774)
T PRK03381 737 WARVATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL 773 (774)
T ss_pred EEEEeecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence 9999999999999999998 89999988 888888875
No 9
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=2.3e-27 Score=226.17 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=156.9
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIR 79 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~ 79 (208)
.|.|.+.+....+.++|+|+++||||||+++|++|+.+|+||++|+|+|+.+ .++|+|+|.+++ |. ..+++++++++
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~-~~-~~~~~~~~~i~ 742 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE-ED-VHYRDIINLVE 742 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC-CC-CChHHHHHHHH
Confidence 3677788888889999999999999999999999999999999999998766 579999999985 66 45568899999
Q ss_pred HHHHHhhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCC-CCeEEEEEEecCcchHHHHHHHHHHhCCccEE
Q 028501 80 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDG-PKRSLLYIETADRPGLLVEIMKIIADVNVDVE 158 (208)
Q Consensus 80 ~~L~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~ 158 (208)
+.|.++|.+.. .....+ .++.+++.++|..++.|.|+++. ..++.|+|.+.||||||++|+.+|+.+|+||.
T Consensus 743 ~~l~~~l~~~~-~~~~~~------~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~ 815 (856)
T PRK03059 743 HELAERLAEQA-PLPEPS------KGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVH 815 (856)
T ss_pred HHHHHHHcCCC-Ccchhh------cccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEE
Confidence 99999997632 111111 12234455689999999998775 46999999999999999999999999999999
Q ss_pred EEEEEecCCeEEEEEEEEeCCCCCCh-HHHHHHHHHHHHHcC
Q 028501 159 SAEIDTEGLVAKDKFHVSYGGAALNS-SLSQVLVNCLRYYLR 199 (208)
Q Consensus 159 ~a~i~t~~~~~~~~f~v~~~g~~~~~-~~~~~l~~~l~~~l~ 199 (208)
+|+|.|.++++.|+|+|++ .++.+ +.++.|+++|..+|+
T Consensus 816 ~AkI~T~~~~v~DvF~V~~--~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 816 TAKINTLGERVEDTFLIDG--SGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred EEEEeecCCEEEEEEEEcC--CCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999954 33334 567899999988875
No 10
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.83 E-value=4.9e-20 Score=125.56 Aligned_cols=73 Identities=27% Similarity=0.461 Sum_probs=68.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCC
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRP 201 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~-~~~~l~~~l~~~l~~~ 201 (208)
+++|+|.|.||||||++|+++|+++|++|.+|+|+|.|+++.|+|||++ +|.|+.++ .++.|+++|.++|.|.
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999999999998 89999886 6689999999998763
No 11
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.80 E-value=7.1e-19 Score=119.85 Aligned_cols=73 Identities=22% Similarity=0.368 Sum_probs=69.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 87 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~ 87 (208)
+|+|.|.|+||||||++|+++|+++|++|..|+|.|.|+.+.|+|||++.+ |.++.++.+.++|+++|.+++.
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~-g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKD-GRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCC-CCccCCHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999999999999999997 9999999999999999998774
No 12
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.80 E-value=5.6e-19 Score=120.37 Aligned_cols=72 Identities=26% Similarity=0.400 Sum_probs=67.1
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEE--ecCCeEEEEEEEEeCCCCCChH-HHHHHHHHHHHHcCCC
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID--TEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRYYLRRP 201 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~--t~~~~~~~~f~v~~~g~~~~~~-~~~~l~~~l~~~l~~~ 201 (208)
|+|+|.+.|||||||+|+++|+++|++|.+|+|+ |.|+++.|+||++.+|.|+.++ .++.|+++|+++|.+|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 5799999999999999999999999999999999 9999999999995589999774 6799999999999887
No 13
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.79 E-value=1e-18 Score=118.23 Aligned_cols=68 Identities=26% Similarity=0.461 Sum_probs=63.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChH-HHHHHHHHHHH
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRY 196 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~-~~~~l~~~l~~ 196 (208)
+++|+|.+.||||||++|+++|+++|++|++|+|+|.|+++.|+|||++ +|.|+.++ .++.|+++|.+
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 4899999999999999999999999999999999999999999999998 89999874 67899988764
No 14
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.77 E-value=4.5e-18 Score=115.10 Aligned_cols=69 Identities=25% Similarity=0.411 Sum_probs=64.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 83 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~ 83 (208)
+|+|.|.++||||||++|+++|.++|++|+.|+|.|.|+++.|+|||++.+ |+|+.++++++.|++.|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~-g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQL-GNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCC-CCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999999996 999988888888887764
No 15
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.76 E-value=9.2e-18 Score=134.13 Aligned_cols=138 Identities=12% Similarity=0.166 Sum_probs=101.6
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCC
Q 028501 11 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH 90 (208)
Q Consensus 11 ~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~ 90 (208)
...+++|+++|+||||+++.++++|+++||||.+.++..+++.|.-++.|. +.| ..+.+++..|...-..
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs----~~~----~~~~~le~~L~~l~~~-- 74 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS----GSW----NAITLIESTLPLKGAE-- 74 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe----CCh----hHHHHHHHHHHhhhhh--
Confidence 346789999999999999999999999999999999999999987667774 443 4567777777662211
Q ss_pred CCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC--e
Q 028501 91 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--V 168 (208)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~--~ 168 (208)
..+ .+. .++...+.. .....++.++|.|.||||++++||++|+++|+||.+++..+++. .
T Consensus 75 ~~L--~i~----v~~~~~~~~------------~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~ 136 (190)
T PRK11589 75 LDL--LIV----MKRTTARPR------------PAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGE 136 (190)
T ss_pred cCe--EEE----EEecccccc------------ccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCC
Confidence 011 110 111111000 11122589999999999999999999999999999999999885 4
Q ss_pred EEEEEEEE
Q 028501 169 AKDKFHVS 176 (208)
Q Consensus 169 ~~~~f~v~ 176 (208)
....|.+.
T Consensus 137 ~~~lf~~~ 144 (190)
T PRK11589 137 RPAQLHIQ 144 (190)
T ss_pred CcccEEEE
Confidence 55556555
No 16
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.72 E-value=7.7e-17 Score=109.84 Aligned_cols=72 Identities=22% Similarity=0.412 Sum_probs=66.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEE--ecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 88 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~--t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~ 88 (208)
|++.|.++||||||++|+++|.++|++|..|+|. |.|+.+.|+||| +.+ |.++.++++++.|++.|.+++..
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~-g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSD-GKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCC-CCccCCHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999 999999999999 665 88898889999999999987753
No 17
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.69 E-value=4.2e-16 Score=106.47 Aligned_cols=73 Identities=26% Similarity=0.320 Sum_probs=65.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 87 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~ 87 (208)
|+|+|+++||||||++|+++|+++||||++|+++|.++.++|+|+|++++.|.++.++++++++++.|.+++.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999999999987326667778889999999988764
No 18
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.69 E-value=4.7e-16 Score=105.89 Aligned_cols=71 Identities=27% Similarity=0.375 Sum_probs=63.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC-CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~-~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
+.|.|+++||||||++++++|+.+|+||++|+|+|.+ +.++|+|+|++.+ |.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~-~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPD-GEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCC-CCCCChHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999999999999995 6789999999886 887777788899998887643
No 19
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=2.1e-15 Score=103.55 Aligned_cols=71 Identities=24% Similarity=0.224 Sum_probs=63.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe-cCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 88 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t-~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~ 88 (208)
.+.|+++||||||++++++|+.+|++|.+|+|+| .++.++|+|+|++.+ |. ..++++++++++.|.++|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~-~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAR-EL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCC-CC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 566799999999885 66 55678889999999998864
No 20
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.62 E-value=3.8e-15 Score=114.95 Aligned_cols=144 Identities=16% Similarity=0.204 Sum_probs=105.9
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCC
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 91 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~ 91 (208)
+++++|+++++||||+...+++...++||||.++|+...|+.+.-+..+. |.| +...+++..|.. +...+
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis----gs~----dav~~le~~l~~-l~~~~- 72 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS----GSW----DAVTLLEATLPL-LGAEL- 72 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe----eCH----HHHHHHHHHhhc-ccccC-
Confidence 46789999999999999999999999999999999999999887444443 665 567788877765 43210
Q ss_pred CchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe--E
Q 028501 92 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV--A 169 (208)
Q Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~--~ 169 (208)
++ .+. ..|..++.. .....++.++|.+.||||++.++|++|..+|+||.+....++... .
T Consensus 73 ~L--~v~----m~rt~~~~~------------~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~ 134 (176)
T COG2716 73 DL--LVV----MKRTGAHPT------------PANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSS 134 (176)
T ss_pred Ce--EEE----EeecCCCcc------------CCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCC
Confidence 11 110 111211100 112347899999999999999999999999999999999987643 5
Q ss_pred EEEEEEEe-CCCCCC
Q 028501 170 KDKFHVSY-GGAALN 183 (208)
Q Consensus 170 ~~~f~v~~-~g~~~~ 183 (208)
...|.++- -+-|.+
T Consensus 135 ~~lfha~it~~lPa~ 149 (176)
T COG2716 135 APLFHAQITARLPAN 149 (176)
T ss_pred ccceehhhhccCCCc
Confidence 56788875 344443
No 21
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=3e-14 Score=97.25 Aligned_cols=70 Identities=26% Similarity=0.321 Sum_probs=63.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-C-CCCCChH-HHHHHHHHHHHHcC
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-G-GAALNSS-LSQVLVNCLRYYLR 199 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~-g~~~~~~-~~~~l~~~l~~~l~ 199 (208)
|+|+|.+.|||||+++|+++|+++|+||..|++.|.++.+.|+|+|++ + |.++.++ .++.|++.|..+|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999999999997 5 8888664 66899999988774
No 22
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.53 E-value=1.2e-13 Score=94.87 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=61.8
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe-cCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t-~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
+++|.+.||||||++|+++|+.+|+||.+|++.| .++.+.|+|+|++ +|...+++.+++|+++|.++|+.
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 7889999999998 55533445778899999999875
No 23
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.52 E-value=1.2e-13 Score=132.92 Aligned_cols=87 Identities=25% Similarity=0.382 Sum_probs=81.8
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL 80 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~ 80 (208)
+|.|.+++..+.+.|+|+|+++||||||++|+++|+.+|++|++|+|+|.++.++|+|+|++.+ |.++.+++++++|++
T Consensus 801 ~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~-g~~l~~~~~~~~l~~ 879 (895)
T PRK00275 801 PTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDAD-NQPLSDPQLCSRLQD 879 (895)
T ss_pred CCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCC-CCCCCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999986 998888788999999
Q ss_pred HHHHhhcc
Q 028501 81 TIINNLLK 88 (208)
Q Consensus 81 ~L~~~l~~ 88 (208)
.|.++|.+
T Consensus 880 ~L~~~L~~ 887 (895)
T PRK00275 880 AICEQLDA 887 (895)
T ss_pred HHHHHHhc
Confidence 99998865
No 24
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.52 E-value=2.2e-13 Score=92.63 Aligned_cols=69 Identities=26% Similarity=0.336 Sum_probs=61.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec-CCeEEEEEEEEe-CCCCCCh-HHHHHHHHHHHHHc
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSY-GGAALNS-SLSQVLVNCLRYYL 198 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~-~~~~~~~f~v~~-~g~~~~~-~~~~~l~~~l~~~l 198 (208)
+.++|.+.||||||++|+++|+.+|+||.+|++.|. ++.+.|+|+|++ +|.++.+ +..+.|++.|..+|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999988 478999999987 7888865 46688999888764
No 25
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.50 E-value=1.5e-13 Score=132.25 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=79.4
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL 80 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~ 80 (208)
+|.|.|+|..++.+|+|.|.++||||||++|+++|.++|++|..|+|+|.|+.+.|+|||++.. |.+++ +++++.|++
T Consensus 795 ~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~-g~~l~-~~~~~~l~~ 872 (884)
T PRK05007 795 PTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATAD-RRALN-EELQQELRQ 872 (884)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCC-CCcCC-HHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999986 89887 677899999
Q ss_pred HHHHhhc
Q 028501 81 TIINNLL 87 (208)
Q Consensus 81 ~L~~~l~ 87 (208)
.|.+++.
T Consensus 873 ~L~~~l~ 879 (884)
T PRK05007 873 RLTEALN 879 (884)
T ss_pred HHHHHHh
Confidence 9988774
No 26
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.50 E-value=1.3e-13 Score=132.22 Aligned_cols=84 Identities=19% Similarity=0.354 Sum_probs=77.6
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL 80 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~ 80 (208)
.|.|.|+|..++.+|+|.|.++||||||++|+++|+++|++|+.|+|+|.|+.+.|+|||++.+ |.++.++++ +.|++
T Consensus 770 ~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~-g~~l~~~~~-~~l~~ 847 (854)
T PRK01759 770 KTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQ-GQALDEEER-KALKS 847 (854)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCC-CCcCChHHH-HHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999986 999887555 88888
Q ss_pred HHHHhh
Q 028501 81 TIINNL 86 (208)
Q Consensus 81 ~L~~~l 86 (208)
+|.++|
T Consensus 848 ~L~~~l 853 (854)
T PRK01759 848 RLLSNL 853 (854)
T ss_pred HHHHHh
Confidence 887765
No 27
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.47 E-value=6.2e-13 Score=88.89 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=54.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
.+|.|+++||||||++++++|+.+|+||++|+|+|+.+ +++|+|+|.+.+ |.. -+.++++|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~-~~~------~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK-RGE------TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC-ccc------hHHHHHHHHHhh
Confidence 47999999999999999999999999999999999876 579999999886 652 245666666554
No 28
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.46 E-value=7.2e-13 Score=127.15 Aligned_cols=85 Identities=24% Similarity=0.287 Sum_probs=77.5
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL 80 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~ 80 (208)
.|.|.+++..+.+.|+|+|++.||||||++|+++|+.+|++|+.|+|+|.++.++|+|+|++.+ |.++.++++ +.|++
T Consensus 783 ~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~-g~~~~~~~~-~~l~~ 860 (869)
T PRK04374 783 APRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEH-DRPLSESAR-QALRD 860 (869)
T ss_pred CCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCC-CCcCChHHH-HHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999986 888766555 88998
Q ss_pred HHHHhhc
Q 028501 81 TIINNLL 87 (208)
Q Consensus 81 ~L~~~l~ 87 (208)
+|.+++.
T Consensus 861 ~L~~~l~ 867 (869)
T PRK04374 861 ALCACLD 867 (869)
T ss_pred HHHHHhc
Confidence 8888763
No 29
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.45 E-value=1.3e-12 Score=88.71 Aligned_cols=67 Identities=30% Similarity=0.558 Sum_probs=58.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 83 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~ 83 (208)
+.|+|.++|+||+|++|+++|+++|+||.+|.++|.+++++|+|+|++.+ |.++ ++++++++++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~-~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDAN-GNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCC-CCcC-CHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999978889999999886 7776 5567776666653
No 30
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.41 E-value=2.4e-12 Score=124.87 Aligned_cols=87 Identities=30% Similarity=0.453 Sum_probs=82.1
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL 80 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~ 80 (208)
+|.|.|++..+.++++|.|+++||||||++|+++|+++|+||.+|+|.|.++.+.|+|+|++.+ |.++.++++++.|++
T Consensus 830 ~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~-g~~i~~~~~~~~l~~ 908 (931)
T PRK05092 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLF-GLKITNEARQAAIRR 908 (931)
T ss_pred CCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCC-CCcCCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999986 999888888999999
Q ss_pred HHHHhhcc
Q 028501 81 TIINNLLK 88 (208)
Q Consensus 81 ~L~~~l~~ 88 (208)
.|.++|.+
T Consensus 909 ~L~~~L~~ 916 (931)
T PRK05092 909 ALLAALAE 916 (931)
T ss_pred HHHHHhcC
Confidence 99998865
No 31
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.41 E-value=3.9e-12 Score=85.26 Aligned_cols=69 Identities=30% Similarity=0.516 Sum_probs=62.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHh
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 85 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~ 85 (208)
|.|.|.++|+||+|++|+++|+++|++|.++++.+.++.++|+|++++.+ |.+ .+.++++++++.|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~-~~~-~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDAD-GQP-LDPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCC-CCc-CCHHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999999988899999999986 877 4557888898888764
No 32
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.37 E-value=5.7e-12 Score=121.06 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=73.2
Q ss_pred CEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHH
Q 028501 2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLT 81 (208)
Q Consensus 2 p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~ 81 (208)
|.|.+++...++.|+|.|+++||||||++||++|+.+|++|+.|+|+|.++.++|+|+|++ .+..+++++++|++.
T Consensus 774 ~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~----~~~~~~~~~~~l~~~ 849 (856)
T PRK03059 774 PRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG----SGLSDNRLQIQLETE 849 (856)
T ss_pred ceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC----CCCCCHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999999953 335567888999999
Q ss_pred HHHhh
Q 028501 82 IINNL 86 (208)
Q Consensus 82 L~~~l 86 (208)
|.+++
T Consensus 850 L~~~L 854 (856)
T PRK03059 850 LLDAL 854 (856)
T ss_pred HHHHh
Confidence 98866
No 33
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.36 E-value=5.3e-12 Score=120.17 Aligned_cols=78 Identities=28% Similarity=0.404 Sum_probs=70.1
Q ss_pred CEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHH
Q 028501 2 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLT 81 (208)
Q Consensus 2 p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~ 81 (208)
|.|.+++..+.+.++|+|+++||||||++|+++|+.+|+||..|+|+|.++.++|+|+|++.+ |.++.++ ++.|+++
T Consensus 695 ~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~-g~~~~~~--~~~l~~~ 771 (774)
T PRK03381 695 PRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAA-GGPLADA--RAAVEQA 771 (774)
T ss_pred cEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC-CCcCchH--HHHHHHH
Confidence 577899999999999999999999999999999999999999999999999999999999997 9988753 5666555
Q ss_pred H
Q 028501 82 I 82 (208)
Q Consensus 82 L 82 (208)
|
T Consensus 772 L 772 (774)
T PRK03381 772 V 772 (774)
T ss_pred h
Confidence 4
No 34
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.35 E-value=2.6e-11 Score=113.58 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=114.6
Q ss_pred EEEEEEe-CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCc
Q 028501 15 TIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES 93 (208)
Q Consensus 15 ~~v~v~~-~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~ 93 (208)
-.++|.. +|++|+|.+++++|+.++++|.+|++.+ ++.+...|.|.... |.++. + ..+++.+..++.+..|..
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~-~~~~~-~---~~~~~~~~~~~~~~~~~~ 620 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANG-PQDFD-P---QEFLQAYKSGVYSELPDP 620 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCC-CCCCC-h---HHHHHHHHHhhcCCCCcc
Confidence 4778887 9999999999999999999999999999 66677899999886 77653 2 667788888776532210
Q ss_pred hhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEE
Q 028501 94 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF 173 (208)
Q Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f 173 (208)
...||.+.+.. ++++|.+.||+|+|+.|+++|. +|.+++++|.|..+.+.|
T Consensus 621 --------------------~~~~~~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~ 671 (693)
T PRK00227 621 --------------------APGITATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQA 671 (693)
T ss_pred --------------------cCCCCceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEE
Confidence 12345555443 7999999999999999999999 889999999999999999
Q ss_pred EEEeCCCCCChHHHHHHHHHHHHHcC
Q 028501 174 HVSYGGAALNSSLSQVLVNCLRYYLR 199 (208)
Q Consensus 174 ~v~~~g~~~~~~~~~~l~~~l~~~l~ 199 (208)
++.. +..+..+..++..+|.
T Consensus 672 ~~~~------~~~r~~~~~~~~~~~~ 691 (693)
T PRK00227 672 ALKP------GFDRATVERDVTRVLA 691 (693)
T ss_pred EecC------cccHHHHHHHHHHHHh
Confidence 9972 1235677777776654
No 35
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=2.1e-11 Score=81.69 Aligned_cols=69 Identities=32% Similarity=0.528 Sum_probs=61.5
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 198 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l 198 (208)
|.+.|.+.|+||+|++|+++|+++|++|.++++.+.++.+.+.|++++ +|.+.+.+..+.|+++|..++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 468999999999999999999999999999999998889999999997 777766667788999987764
No 36
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.31 E-value=1.5e-11 Score=118.41 Aligned_cols=84 Identities=27% Similarity=0.402 Sum_probs=77.7
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL 80 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~ 80 (208)
+|.|.|+|..++.+|.|.|.++||||||++|+++|+++|++|..|+|.|.++.+.|+|+|++.. |.++.+ ++++.|++
T Consensus 766 ~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~-g~~~~~-~~~~~l~~ 843 (850)
T TIGR01693 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLF-GLKLTD-EEEQRLLE 843 (850)
T ss_pred CCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCC-CCCCCH-HHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999986 998876 67788888
Q ss_pred HHHHhh
Q 028501 81 TIINNL 86 (208)
Q Consensus 81 ~L~~~l 86 (208)
+|.+++
T Consensus 844 ~L~~~l 849 (850)
T TIGR01693 844 VLAASV 849 (850)
T ss_pred HHHHHh
Confidence 887755
No 37
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.24 E-value=1.2e-10 Score=78.90 Aligned_cols=65 Identities=26% Similarity=0.410 Sum_probs=55.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHH
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCL 194 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l 194 (208)
+.+.|.++||||+|++|+.+|+++|+||.++.+.|.++.+.++|++++ +|.+++.+..++|+++|
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l 67 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEI 67 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHh
Confidence 578899999999999999999999999999999998888889999987 77777444555555554
No 38
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.4e-11 Score=111.43 Aligned_cols=84 Identities=25% Similarity=0.398 Sum_probs=72.9
Q ss_pred CCEEEEeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501 1 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL 80 (208)
Q Consensus 1 ~p~V~~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~ 80 (208)
+|.|.|.+...+..++++|.+.||||||+.++++|++++++|+.|+|.|.|+.+.|+|+|++.. |.+++++ ....+.+
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~-~~~l~~~-~~q~l~~ 855 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDAD-GQALNAE-LRQSLLQ 855 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccc-cccCCHH-HHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999997 8888543 3344444
Q ss_pred HHHHhh
Q 028501 81 TIINNL 86 (208)
Q Consensus 81 ~L~~~l 86 (208)
.|.+++
T Consensus 856 ~ll~al 861 (867)
T COG2844 856 RLLEAL 861 (867)
T ss_pred HHHHHh
Confidence 444444
No 39
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.14 E-value=9.6e-10 Score=73.14 Aligned_cols=69 Identities=32% Similarity=0.548 Sum_probs=59.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHh
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 85 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~ 85 (208)
+.|.|.++|+||+|++++++|+++|++|.++.+.+.++...+.|++..++ +.. .++++++++++.|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD-GRP-LDPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC-CCc-CCHHHHHHHHHHHHhh
Confidence 36889999999999999999999999999999999888888999998875 665 3457888888888653
No 40
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.07 E-value=2.3e-09 Score=71.27 Aligned_cols=68 Identities=32% Similarity=0.498 Sum_probs=58.4
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 198 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l 198 (208)
.+.|.+.|+||+|++|+.+|+++|++|.++.+.+.++...+.|.+.. ++.+.+++..+.|+++|..++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDAL 70 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 57899999999999999999999999999999998778888999986 555555567788888887653
No 41
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.03 E-value=3.5e-09 Score=70.80 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=51.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-CeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL 198 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l 198 (208)
+.|.|.++|||||++.|+.+|+.+|+||..|++.|.. +.+.|+|.|.+ +|.- -+.|.++|+++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence 4688999999999999999999999999999998764 56889999997 5554 244555555554
No 42
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.96 E-value=7.8e-09 Score=70.73 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=53.2
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
+++|++.|+||||+++.++++|+++||||.+.+..+.++.+.-.+.+..+ ++..+++++.|.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999998877777643 256688888888743
No 43
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.96 E-value=5.4e-09 Score=71.54 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=53.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
+.+|++.|+||||+++.++++|+++|+||...+..+.+++....+.++.. +...+.|+++|.....+
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-----EDSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-----HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-----cccHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999988888755 33456777777665433
No 44
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.79 E-value=2.9e-08 Score=67.64 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=42.3
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
+++|.|+||||++++++++|+++||||.+.+..+.++.....|.++-
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~ 47 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI 47 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc
Confidence 37899999999999999999999999999999988888777777763
No 45
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.79 E-value=6.1e-08 Score=66.48 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=49.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
+.|++.|+||||+++.+++.|+++|+||.+++.+..++.|.-.+.+..+ + ...+.+++.|.+
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~----~----~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS----W----DAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec----c----ccHHHHHHHHHH
Confidence 6899999999999999999999999999999999988887544444422 1 124667777766
No 46
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.68 E-value=3.6e-07 Score=59.78 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=46.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
+.|.|.++||||+|++++++|+++|+||..+...+.++ +....+...+. ...+.+.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDE---------EDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEG---------HGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCC---------CCHHHHHHHHHc
Confidence 46889999999999999999999999999999999988 33333333322 334556666655
No 47
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.67 E-value=2.3e-07 Score=63.54 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=42.6
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
+++.+.|+||||+++.|+++|+++|+||...+....++....++.++.
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~ 49 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG 49 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence 689999999999999999999999999999999998887766666653
No 48
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.64 E-value=1.7e-07 Score=63.80 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=51.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHh
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 85 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~ 85 (208)
+|+|.++||||++++++++|+++|+||.+.+..+.++.+.-.|.+.-+. +. ..+.+++.|+..
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~-~~------~~~~l~~~l~~l 63 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPD-SA------DSEALLKDLLFK 63 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCC-CC------CHHHHHHHHHHH
Confidence 3789999999999999999999999999999888888777677776543 21 246777777763
No 49
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.64 E-value=2.9e-07 Score=60.28 Aligned_cols=39 Identities=23% Similarity=0.453 Sum_probs=36.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV 168 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~ 168 (208)
|.+.+.++||||+|++++.+|+++|+||..+.+.+.++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~ 39 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG 39 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence 578899999999999999999999999999999998774
No 50
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.61 E-value=1.6e-07 Score=60.71 Aligned_cols=66 Identities=14% Similarity=0.316 Sum_probs=56.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
++|+|.|||+.||-.++|+++.+.|++|..+.++|.|.+.+-+|+|.... .. + +-+++.|++.|.+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~-~~-~--~~rW~lLK~RL~~ 66 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRP-PS-I--KVRWDLLKNRLMS 66 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCC-CC-C--cccHHHHHHHHHh
Confidence 47899999999999999999999999999999999999998899998653 22 2 3467888888766
No 51
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.48 E-value=1.2e-05 Score=58.81 Aligned_cols=112 Identities=17% Similarity=0.278 Sum_probs=82.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCch
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESS 94 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~ 94 (208)
-++.|+..|+||-|+.++++|.+.|+||..-.|.-+++.-+-.++|..+ +.-.+.|+++
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~------------d~A~~~Lee~--------- 62 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP------------DEAHSVLEEA--------- 62 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh------------HHHHHHHHHC---------
Confidence 3789999999999999999999999999988888888765444444332 1122344430
Q ss_pred hhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe-EEEEE
Q 028501 95 EQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKF 173 (208)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~-~~~~f 173 (208)
.|. |.. .-++-|...|+||-|..|+.+|.++++|+.++...+.... +.-+|
T Consensus 63 ------------------gF~----Vr~------~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~ 114 (142)
T COG4747 63 ------------------GFT----VRE------TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIV 114 (142)
T ss_pred ------------------CcE----EEe------eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEE
Confidence 121 111 1478899999999999999999999999999998876553 43444
Q ss_pred EE
Q 028501 174 HV 175 (208)
Q Consensus 174 ~v 175 (208)
.+
T Consensus 115 r~ 116 (142)
T COG4747 115 RV 116 (142)
T ss_pred Eh
Confidence 44
No 52
>PRK00194 hypothetical protein; Validated
Probab=98.47 E-value=1.5e-06 Score=61.10 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=41.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
++++++.|+||||++++|+++|+++|+||..++..+.++.....+.++
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~ 50 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence 589999999999999999999999999999999988777655555554
No 53
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.42 E-value=2.1e-06 Score=60.21 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=42.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
+++++.|+||||++++|+++|+++|+||...+..+.++.....+.++-
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~ 49 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDI 49 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEe
Confidence 579999999999999999999999999999999987776666666653
No 54
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.40 E-value=2.6e-06 Score=58.38 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=33.9
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
++++.|+|+||++++|+++|+++|+||.+++..+.+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 378999999999999999999999999999999876
No 55
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=98.38 E-value=5e-07 Score=63.03 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=43.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
..+|+|.|+||||+.+.|+++|+++|+||.+..-+-..+.....+.+.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~ 50 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence 478999999999999999999999999999998887777777777775
No 56
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=98.33 E-value=1.6e-06 Score=69.52 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=46.9
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
++++|++.|+||||+++.|+++|+++||||...+.+..++....++.++.
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~ 56 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG 56 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC
Confidence 57999999999999999999999999999999999999999888888854
No 57
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.32 E-value=2.5e-06 Score=59.74 Aligned_cols=64 Identities=8% Similarity=0.105 Sum_probs=49.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
..|++.|+|+||+++++++.|+++|+||.+.+..+.++.+.-.+.+..+ +.. ...+.+++.|..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~~~----~~~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--ESN----LDFAELQEELEE 65 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--CCC----CCHHHHHHHHHH
Confidence 4789999999999999999999999999999999987766555555533 211 124677777776
No 58
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.31 E-value=2.5e-06 Score=57.69 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=44.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
+|++.|+||||++++|++.|+++|+||.+.+.++..... .|++.-. ......+-..+.+++.|+.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~--~f~~~~~--~~~~~~~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSG--RFFMRVE--FELEGFDLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCC--eEEEEEE--EEeCCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999998743321 1333221 1110000124677777776
No 59
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.31 E-value=6.4e-06 Score=56.42 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=46.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC------CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG------SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~------~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
.|++.|+|+||++++|++.|+++|+||.+.+..+.+ +.+.-.+.+..+. + .....+++.|+.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~------~~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-G------TDLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-C------CCHHHHHHHHHH
Confidence 378999999999999999999999999999999987 3343334444331 1 124667777766
No 60
>PRK00194 hypothetical protein; Validated
Probab=98.30 E-value=3.5e-06 Score=59.18 Aligned_cols=65 Identities=9% Similarity=0.135 Sum_probs=49.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
...|++.|+|+||+++++++.|+++|+||.+.+..+.++.+.-.+.+.-+ +.+. ..+.+++.|.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~----~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK----DFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC----CHHHHHHHHHH
Confidence 57899999999999999999999999999999988877766544454432 2111 13566666665
No 61
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.26 E-value=1.7e-05 Score=53.63 Aligned_cols=35 Identities=17% Similarity=0.423 Sum_probs=32.6
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
++++.|+||||++++|+++|+++|+||...+..+.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~ 35 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD 35 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence 37899999999999999999999999999999874
No 62
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=98.11 E-value=1.9e-05 Score=67.29 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=40.0
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe--cCCeEEEEEEE
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHV 175 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t--~~~~~~~~f~v 175 (208)
+.+++++.|.||||++++|+++|+++|+||...+..+ .++.....+.+
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v 54 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEF 54 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEE
Confidence 3689999999999999999999999999999999998 55543333333
No 63
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.09 E-value=2.5e-05 Score=53.50 Aligned_cols=48 Identities=33% Similarity=0.483 Sum_probs=39.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec--CCeEEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~--~~~~~~~f~v~ 176 (208)
.+.+.|.+.||||+|++|+++|++.|+||.++++.+. ++.+.-.|.+.
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~ 55 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVE 55 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEE
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEE
Confidence 4789999999999999999999999999999999985 45566666664
No 64
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.96 E-value=8.7e-05 Score=50.76 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=44.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC-C-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-S-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~-~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
+.|.|.+.||||+|++|+.++++.|+||...++.+.. + .+.-.|.+.-. +.+.++.+.+.|++
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~-------d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK-------DLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES-------SHHHHHHHHHHHCT
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC-------CHHHHHHHHHHHHC
Confidence 5799999999999999999999999999999999964 4 45445555543 23455555555443
No 65
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.92 E-value=0.00011 Score=62.51 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=39.4
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEEEEEEEEeC
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYG 178 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~~~f~v~~~ 178 (208)
++++.|+||||+++.||.+|+++|+||..++..... +....++.++-.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~ 51 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE 51 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC
Confidence 589999999999999999999999999999988753 455555555533
No 66
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.90 E-value=7.1e-05 Score=63.78 Aligned_cols=66 Identities=20% Similarity=0.129 Sum_probs=49.8
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe--cCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT--EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t--~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
....|+|.|+||||+++.++++|+++|+||.+.+..+ .++.|.-.+.+... ..+ ...+.|++.|++
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~--~~~----~~~~~L~~~L~~ 72 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD--GLI----FNLETLRADFAA 72 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC--CCC----CCHHHHHHHHHH
Confidence 4578999999999999999999999999999999999 66654433444321 111 225778887776
No 67
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.84 E-value=9.5e-05 Score=63.06 Aligned_cols=44 Identities=16% Similarity=0.078 Sum_probs=37.2
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEE--ecCCeeE
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQ 55 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~--t~~~~~~ 55 (208)
.....|+|.|+||||+.+.|++.|+++|+||.+.+.+ +..+.++
T Consensus 7 m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ff 52 (289)
T PRK13010 7 SPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFF 52 (289)
T ss_pred ccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEE
Confidence 3456899999999999999999999999999999997 3344443
No 68
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.83 E-value=0.0003 Score=47.06 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=45.7
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
+.|.++|+||+|++|+.++++.|.||......+..+ .+.-.|.+.-. +.+.++.+.+.|+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~-------~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP-------SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC-------CHHHHHHHHHHHhc
Confidence 678999999999999999999999999888877643 44444555533 23566666666655
No 69
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.83 E-value=0.00016 Score=61.41 Aligned_cols=63 Identities=11% Similarity=0.086 Sum_probs=46.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
.|+|.|+||||+++.+++.|+++|+||.+.+.+... +.|.-.+.+..+ +... ..+.+++.|.+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHH
Confidence 589999999999999999999999999999999864 555544444433 2112 23566666655
No 70
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.81 E-value=0.00014 Score=61.96 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=34.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
.+.++|.|.||||+++.||++|+++|+||..++..+.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~ 43 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDD 43 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeec
Confidence 5789999999999999999999999999999998754
No 71
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.78 E-value=0.00039 Score=47.58 Aligned_cols=51 Identities=14% Similarity=0.328 Sum_probs=41.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe-EEEEEEEEeCCC
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGA 180 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~-~~~~f~v~~~g~ 180 (208)
+.+.+...|+||.|++|...|+++|+||.+......++. ..-.|+++-+|.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~ 53 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH 53 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC
Confidence 456777889999999999999999999999988776543 445788876665
No 72
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.76 E-value=0.00018 Score=61.35 Aligned_cols=48 Identities=10% Similarity=0.098 Sum_probs=38.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEE--ecCCeEEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID--TEGLVAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~--t~~~~~~~~f~v~ 176 (208)
.++|+|.|+||||+++.||.+|+++|+||..++.. +..+....++.+.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 57899999999999999999999999999999986 3334333333343
No 73
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.75 E-value=0.0002 Score=47.99 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=36.8
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-CeEEEEEEEE
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVS 176 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~~~~~f~v~ 176 (208)
+.+.+.||||+|++|+.++++.|+||.++...+.. +.+...|.+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ve 47 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVD 47 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEE
Confidence 68899999999999999999999999999987654 4444445553
No 74
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.70 E-value=0.00017 Score=45.79 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=38.6
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-CeEEEEEEEEe
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSY 177 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~~~~~f~v~~ 177 (208)
+.+...|+||.|.+++..|.++|+||.++.+...+ +.+...|.+++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 35788999999999999999999999999988765 55666777753
No 75
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.69 E-value=6.8e-05 Score=52.40 Aligned_cols=67 Identities=9% Similarity=0.102 Sum_probs=47.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
..+++|.++||||+.+.++++|+++|+||.+-...-..+++--.+.|..+. .. .....+++.|....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~--~~----~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK--EV----VDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh--Hh----ccHHHHHHHHHHHH
Confidence 468999999999999999999999999999777666667664445554331 11 22355666655533
No 76
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.64 E-value=0.00028 Score=46.46 Aligned_cols=45 Identities=13% Similarity=0.335 Sum_probs=37.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
..+.|..+|+||.|++|+..|+++|+||.++.+...++. ..+.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 357888999999999999999999999999998776553 444443
No 77
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.64 E-value=0.00049 Score=58.66 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=46.7
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
....|+|.|+||||+++.+++.|+++|+||.+.+..+... .|.-.+.+..+. +. ..+.|++.|.+
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~------~~~~L~~~L~~ 72 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GL------DEDALRAGFAP 72 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CC------CHHHHHHHHHH
Confidence 3568999999999999999999999999999888875332 343334443332 21 14667777766
No 78
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.58 E-value=0.0011 Score=43.33 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=29.9
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 50 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~ 50 (208)
+.|.++|+||+|++++.+|+++|++|.+......
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3578899999999999999999999997776654
No 79
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.57 E-value=0.00075 Score=43.90 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=37.0
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEEEEEEE
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV 175 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~~~f~v 175 (208)
+.+.+.|++|+|++|++.|+++|+||.++.+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 57889999999999999999999999999988754 344455666
No 80
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.56 E-value=0.00083 Score=45.85 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=37.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEE
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 175 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v 175 (208)
..+.+...|+||+|+.|+..|+..|.||.++.+....+.....+.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti 48 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKL 48 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEE
Confidence 5789999999999999999999999999999988655443333333
No 81
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.00026 Score=58.94 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=36.0
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 51 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~ 51 (208)
....+++.|+|+||+++.|++.|+.+||||.++.-++..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~ 44 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDP 44 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccccc
Confidence 457999999999999999999999999999999999644
No 82
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.55 E-value=0.0004 Score=45.91 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=37.3
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC--eEEEEEEEE
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--VAKDKFHVS 176 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~--~~~~~f~v~ 176 (208)
+.+.+..+|+||.|+++++.|+++|+||.++....... .....|.++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 56888999999999999999999999999998776532 233345554
No 83
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.55 E-value=0.00045 Score=45.33 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=30.2
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
+.|..+|+||.|++|+.+|++.|+||.++.....
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3578899999999999999999999998887654
No 84
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.55 E-value=0.00064 Score=46.41 Aligned_cols=64 Identities=8% Similarity=0.077 Sum_probs=45.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
..+.+...|+||.|++++++|+..|+||.+-.+.-+.+.-+-.+.+.-. |. +..++++.+.|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~~----~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--CT----ENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--CC----HHHHHHHHHHHhC
Confidence 3689999999999999999999999999988877554432222333322 22 3556777777665
No 85
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.54 E-value=0.0016 Score=45.97 Aligned_cols=71 Identities=11% Similarity=0.251 Sum_probs=52.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
..+.+-+...|+||-|+++...|+++|+|+.++.........+. .|+|+-+|. . ++..+.+.+.|...|+-
T Consensus 13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~-~~~~~~~l~~L~~~~~~ 84 (90)
T cd04931 13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-S-APALDPIIKSLRNDIGA 84 (90)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-C-CHHHHHHHHHHHHHhCC
Confidence 34677777799999999999999999999999999887666544 688876776 2 33334444555655543
No 86
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.52 E-value=0.00055 Score=44.50 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=52.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 197 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~ 197 (208)
++|+|.++|+.||=.||+|++-+.|++|....++|.|.-..-+|.|.....+++- .-..|+.+|..+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~-rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKV-RWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcc-cHHHHHHHHHhc
Confidence 3689999999999999999999999999999999999988888999753333211 125555555543
No 87
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.51 E-value=0.00057 Score=45.35 Aligned_cols=57 Identities=18% Similarity=0.373 Sum_probs=40.3
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEec--CCeEEEEEEEEeCCCCCChHHHHHHH
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLV 191 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~--~~~~~~~f~v~~~g~~~~~~~~~~l~ 191 (208)
+-+.+.|+||.+++|++.|+++|+||.+...... ++...-+|.++ + +.+.+..+.|+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~--~-~~~~~~~~~l~ 60 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD--E-PVPDEVLEELR 60 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC--C-CCCHHHHHHHH
Confidence 3568999999999999999999999999987653 34454555553 3 33334444443
No 88
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.51 E-value=0.00059 Score=45.77 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=37.2
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-CeEEEEEEEE
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVS 176 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~~~~~f~v~ 176 (208)
.+.+.+.|+||+|++|++.|++.|+||..+...+.. +.+.-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~ 48 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISID 48 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEE
Confidence 578999999999999999999999999999876533 3344456664
No 89
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.51 E-value=0.00067 Score=53.63 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=34.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
..+.+.+.|+||+|++|+.+|+.+|+||.+..+....
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~ 39 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAE 39 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcC
Confidence 5799999999999999999999999999999997633
No 90
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.50 E-value=0.0011 Score=47.17 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=48.1
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
.+...+.+...|+||.|++|++.|+..|+||.+-.+.-+.+.-+-.+.+.-.+ ++.++++.+.|++
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~-------~~~i~Qi~kQL~K 71 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND-------DQRLEQMISQIEK 71 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC-------chHHHHHHHHHhC
Confidence 45567999999999999999999999999999888876665433233333221 1456777777665
No 91
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.50 E-value=0.00051 Score=46.33 Aligned_cols=35 Identities=31% Similarity=0.568 Sum_probs=32.6
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
.++|.+.||+|+|++|+.+|++.|+||.++.+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999999764
No 92
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.47 E-value=0.00084 Score=46.56 Aligned_cols=64 Identities=16% Similarity=0.121 Sum_probs=47.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
.+.+...|+||.|+++++.|+..|+||.+-.+..+.+.-+-.+.+.-.. | ++..++++.+.|.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~-~----d~~~ieqI~kQL~K 67 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI-Q----DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC-C----CHHHHHHHHHHHhC
Confidence 6889999999999999999999999999888877766433334443321 2 23556777777665
No 93
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.45 E-value=0.0012 Score=51.34 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=46.0
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE--EEEEEEeCCCCCChHHHHHHHHHHHHH
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK--DKFHVSYGGAALNSSLSQVLVNCLRYY 197 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~--~~f~v~~~g~~~~~~~~~~l~~~l~~~ 197 (208)
..+.+...|+||.|++|+..|+++|+||.+..+...++... -.|.+. | ++...++|.+.|...
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~--~---d~~~i~qi~kQl~Kl 66 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV--G---DDKVLEQITKQLNKL 66 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE--C---CHHHHHHHHHHHhcC
Confidence 46889999999999999999999999999999887653323 334443 3 244456666665543
No 94
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.43 E-value=0.0015 Score=46.38 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=46.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 196 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~ 196 (208)
....+.+...|+||+|+.|+..|+..|.||.++.+...+......+.+.-.+ +...+++...|..
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~----~~~i~Qi~kQL~K 71 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND----DQRLEQMISQIEK 71 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC----chHHHHHHHHHhC
Confidence 3577999999999999999999999999999999987665543333332222 2344555555543
No 95
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.42 E-value=0.0023 Score=41.71 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=42.6
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec-CCe-EEEEEEEEeCCCCCChHHHHHHHHHHH
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLV-AKDKFHVSYGGAALNSSLSQVLVNCLR 195 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~-~~~-~~~~f~v~~~g~~~~~~~~~~l~~~l~ 195 (208)
.+.+.+.|+||+|.+|+..|+++|++|.++...+. ++. +.-.|.+... + +..+.+.+.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD----D-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC----H-HHHHHHHHHHh
Confidence 46788999999999999999999999999998765 333 3334444321 2 33455555554
No 96
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.41 E-value=0.0013 Score=45.63 Aligned_cols=64 Identities=11% Similarity=0.209 Sum_probs=46.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHH
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY 196 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~ 196 (208)
..+.+...|+||+|+.|+..|+..|+||.+..+....+.....+.+.- .|. +...+++.+.|..
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d---~~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD---DTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC---HHHHHHHHHHHhC
Confidence 468899999999999999999999999999999876655444444432 232 2334555555543
No 97
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.40 E-value=0.00085 Score=42.49 Aligned_cols=45 Identities=9% Similarity=0.269 Sum_probs=36.9
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC-CeeEEEEEEe
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFIT 61 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~-~~~~d~F~v~ 61 (208)
+.+..+|+||.+++++..|.+.|+||.+..++..+ +..+-.|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 45788999999999999999999999999988876 4455445553
No 98
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.38 E-value=0.0019 Score=42.98 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=32.2
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
.+.+.+.|+||+|.+|++.|+++|++|.++...+..
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~ 37 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEAD 37 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccC
Confidence 478899999999999999999999999999876543
No 99
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.38 E-value=0.0019 Score=42.39 Aligned_cols=45 Identities=9% Similarity=0.217 Sum_probs=37.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEe
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~ 61 (208)
..++|..+|+||.|++++.+|.+.|+||.+..++..++. .++.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 367889999999999999999999999999988777664 335554
No 100
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.36 E-value=0.0016 Score=43.90 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=32.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 50 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~ 50 (208)
.|.|.+.||+|+|++|+.++++.|+||....+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999998775
No 101
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.35 E-value=0.0021 Score=41.82 Aligned_cols=33 Identities=18% Similarity=0.521 Sum_probs=30.5
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT 164 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t 164 (208)
+.+.+.|+||.|++|++.|+++|++|.++....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 577899999999999999999999999998765
No 102
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.35 E-value=0.0019 Score=42.23 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=32.2
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
.+.+.+.|+||.|+++++.|++++++|.++...+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 477899999999999999999999999998877653
No 103
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.32 E-value=0.0029 Score=42.27 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=43.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHH-HHHHHHHHHHH
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPD-LLERIRLTIIN 84 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~-~~~~l~~~L~~ 84 (208)
.+.+.++|+||++++|+++|+++|++|......+..+ .+.-.|.+...+ .+ .++++.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~-------~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST-------MNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc-------hHHHHHHHHHHHhc
Confidence 5789999999999999999999999999877654433 333345554331 12 55666666554
No 104
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=97.31 E-value=0.00033 Score=46.10 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=34.6
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEE
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 175 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v 175 (208)
+-+.+.|+||+|++|+..|++.|+||.++...+.++.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999988766544444444544
No 105
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.30 E-value=0.0019 Score=51.06 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=47.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
..+.+.+.|+||+|+++++.|+..|+||.+-.+....+.-.-.+.+.-+ +. +..+++|.+.|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~----~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GD----DRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CC----HHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999988886644432223444333 22 134678888887744
No 106
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.29 E-value=0.0039 Score=41.05 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=32.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 50 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~ 50 (208)
..+.+..+|+||.|+++++.|+++|++|.+......
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 467889999999999999999999999998877665
No 107
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.29 E-value=0.0012 Score=42.77 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=30.8
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
+.+.-+|+||-|++++..|+++|+||.++......
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 67788999999999999999999999988875543
No 108
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.29 E-value=0.0026 Score=49.69 Aligned_cols=61 Identities=15% Similarity=0.272 Sum_probs=43.9
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe--EEEEEEEEeCCCCCChHHHHHHHHHHH
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV--AKDKFHVSYGGAALNSSLSQVLVNCLR 195 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~--~~~~f~v~~~g~~~~~~~~~~l~~~l~ 195 (208)
..+++...|+||.|++|+..|+.+|+||.+..+....+. ..-.|.++ | ++...+++...|.
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~--~---~~~~i~qi~kQl~ 65 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS--G---DEQVIEQITKQLN 65 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE--C---CHHHHHHHHHHHh
Confidence 578999999999999999999999999999998765533 33344443 2 2333455555544
No 109
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=97.22 E-value=0.0033 Score=42.89 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=35.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV 168 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~ 168 (208)
+.+++...|+||.|+.|+..|+..|.||.++.+....+.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~ 42 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDA 42 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCC
Confidence 578999999999999999999999999999999875433
No 110
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.002 Score=53.82 Aligned_cols=47 Identities=15% Similarity=0.328 Sum_probs=38.6
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
..+++.++|+|+||+++.|+..|.++|+||....-.+ +.....|+.+
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~--D~~~g~FFmR 52 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD--DPETGRFFMR 52 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc--ccccCeEEEE
Confidence 3589999999999999999999999999999988774 3334445554
No 111
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00023 Score=55.56 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=46.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
++.+|++.|.||||++..|+|...++|||+...|++..|+...-+..++.
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg 53 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG 53 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee
Confidence 46899999999999999999999999999999999999999888888864
No 112
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.20 E-value=0.0045 Score=41.06 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=31.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 51 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~ 51 (208)
-+.+.+.|+||+++++++.|+++|++|......+..
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~ 37 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEAD 37 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccC
Confidence 477889999999999999999999999988776543
No 113
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.14 E-value=0.0077 Score=40.46 Aligned_cols=49 Identities=20% Similarity=0.424 Sum_probs=39.2
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC-eEEEEEEEEeCCC
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGA 180 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~-~~~~~f~v~~~g~ 180 (208)
+.+..+|+||-|+++...|+++|+||.++......+ ...-.|+++-+|.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~ 51 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGH 51 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECC
Confidence 345568999999999999999999999998877655 3445788876664
No 114
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.13 E-value=0.0044 Score=41.00 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=31.8
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
+.+.+..+|+||.|..+++.|+++|+||.++.....
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~ 37 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS 37 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence 467888999999999999999999999999876543
No 115
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.13 E-value=0.0059 Score=39.83 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=32.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 51 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~ 51 (208)
.+.+.++|+||.|++++..|++++++|.+....+..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 578899999999999999999999999988876653
No 116
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=97.12 E-value=0.0038 Score=42.17 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=39.8
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEEEeCC
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGG 179 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v~~~g 179 (208)
+-+...|+||-|+++...|+.+|+|+.++..-...+... -.|+|+-+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 445558899999999999999999999999988776644 468887667
No 117
>PRK08577 hypothetical protein; Provisional
Probab=97.11 E-value=0.0052 Score=46.51 Aligned_cols=49 Identities=27% Similarity=0.319 Sum_probs=40.0
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-Ce-EEEEEEEE
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LV-AKDKFHVS 176 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~-~~~~f~v~ 176 (208)
..+.+.+.+.|+||+|++|+++|+++|++|.+.++.+.. +. +...|.+.
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve 105 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD 105 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence 479999999999999999999999999999999887754 22 33444443
No 118
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.10 E-value=0.00072 Score=45.54 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=50.3
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEec--CCeEEEE--EEEEeCCCCCCh-HHHHHHHHHHHHHc
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDK--FHVSYGGAALNS-SLSQVLVNCLRYYL 198 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~--~~~~~~~--f~v~~~g~~~~~-~~~~~l~~~l~~~l 198 (208)
++++|.-||-.+||+|-+|+.+|+-|.+|.|..+ +++.+.+ |.+.+.++.++. ..+..+.+.+...|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999764 4565554 555654444553 35667776665443
No 119
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=97.09 E-value=0.0047 Score=42.17 Aligned_cols=61 Identities=7% Similarity=0.131 Sum_probs=45.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-e-EEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-K-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~-~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
..+.+...|+||.|+++++.|...|+||.+-.+..+.+. . --++.+. + . ..++.|.+.|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~-~------~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S-E------RPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C-C------chHHHHHHHHhc
Confidence 468999999999999999999999999999988776553 2 2234442 2 2 345667777665
No 120
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.09 E-value=0.0047 Score=48.05 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=46.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-ee-EEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~-~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
.++|...|+||.|+++++.|++.|+||.+-.+....+ +. .-+|.+. |. +...+++.+.|.+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~d----~~~i~qi~kQl~K 65 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----GD----DKVLEQITKQLNK 65 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----CC----HHHHHHHHHHHhc
Confidence 5888999999999999999999999999888877763 33 2334443 21 3566777777766
No 121
>PRK04435 hypothetical protein; Provisional
Probab=97.08 E-value=0.0083 Score=46.13 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=47.6
Q ss_pred CCccccEEE-EecCC-CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-CeEEEEEEEE
Q 028501 113 DVDIATHIH-VKEDG-PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVS 176 (208)
Q Consensus 113 ~~~~~~~V~-~~~~~-~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~~~~~f~v~ 176 (208)
.+.++..|- |+... ...+.+.+.+.|+||+|++|++.|++.|+||..+...... +.+.-.|.+.
T Consensus 51 ~ykykd~vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVe 117 (147)
T PRK04435 51 FYKYKDYVFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISID 117 (147)
T ss_pred HhcCCCeeECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEE
Confidence 345555554 44443 4589999999999999999999999999999999875533 4445556664
No 122
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.05 E-value=0.0055 Score=47.86 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=46.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-ee-EEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~-~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
..++|...|+||.|++|++.|++.|+||.+-.+....+ +. .-+|.+. |. +..++++.+.|.+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~----~~----~~~i~qi~kQl~K 66 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS----GD----EQVIEQITKQLNK 66 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE----CC----HHHHHHHHHHHhc
Confidence 36889999999999999999999999999888776653 32 2334443 22 3566777777766
No 123
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.00 E-value=0.012 Score=38.17 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=31.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 50 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~ 50 (208)
.+.+.+.|+||++++++..|+++|++|......+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPT 36 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeec
Confidence 46788999999999999999999999998888765
No 124
>PRK08577 hypothetical protein; Provisional
Probab=96.98 E-value=0.016 Score=43.74 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=35.9
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 51 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~ 51 (208)
+....+.|.+.|+||+|++++++|+++|++|.+....+..
T Consensus 54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 3467899999999999999999999999999988877765
No 125
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.97 E-value=0.004 Score=40.35 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=36.2
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--CeeEEEEEE
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFI 60 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~~d~F~v 60 (208)
+.|.++|++|++++++++|+++|++|.+....... +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67899999999999999999999999999887765 334434544
No 126
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.91 E-value=0.0081 Score=40.01 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=30.2
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 50 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~ 50 (208)
+.+.-+|+||-|++++..|+++|.||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788999999999999999999999997765554
No 127
>PRK11899 prephenate dehydratase; Provisional
Probab=96.89 E-value=0.0066 Score=51.56 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=48.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCCCChHHHH
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALNSSLSQ 188 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~~~~~~~~ 188 (208)
.+.+-+...|+||.|+++...|+++|||+.++..-..+++.+. .||++-+|..-++..++
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~ 254 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVAL 254 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHH
Confidence 5777777789999999999999999999999999988777555 78887677653333333
No 128
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.83 E-value=0.0087 Score=40.57 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=40.8
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEEEeCCCC
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAA 181 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v~~~g~~ 181 (208)
+-+..+|+||-|+++...|+.+|+|+.++.........+ -.|+|+-+|..
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH
Confidence 444558999999999999999999999999988765544 46888767765
No 129
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.81 E-value=0.02 Score=36.14 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=31.6
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 51 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~ 51 (208)
|.+.++|+||.+..++..|.+++++|....+...+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 46789999999999999999999999999887765
No 130
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.73 E-value=0.008 Score=40.02 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=30.6
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
+.+.-+|+||-|++++..|+++|+||.++.....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5678899999999999999999999999976654
No 131
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.73 E-value=0.0078 Score=36.16 Aligned_cols=35 Identities=34% Similarity=0.718 Sum_probs=31.4
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
+.+.+.|++|++++|+..|++.|++|..+......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788999999999999999999999999987654
No 132
>PRK04435 hypothetical protein; Provisional
Probab=96.69 E-value=0.028 Score=43.23 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=49.8
Q ss_pred EeecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 6 IDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 6 ~~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
++.........+.+...|+||+|++|+++|+++|+||.........++ +.-.|.+...+ . ...++.|.+.|+.
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~--~----~~~L~~Li~~L~~ 134 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSS--M----EGDIDELLEKLRN 134 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCC--h----HHHHHHHHHHHHc
Confidence 344445566789999999999999999999999999997776554444 33345554432 1 1245555555544
No 133
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.68 E-value=0.026 Score=33.72 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=31.4
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 51 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~ 51 (208)
|.+.++|++|.++++++.|.+.|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999998887654
No 134
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.63 E-value=0.027 Score=36.41 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=30.8
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 50 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~ 50 (208)
+.+.++|+||.+++++..|+++|++|.+......
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~ 35 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRK 35 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEec
Confidence 5788999999999999999999999998887763
No 135
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.63 E-value=0.012 Score=37.13 Aligned_cols=35 Identities=34% Similarity=0.664 Sum_probs=31.7
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
+.+.+.|+||.+.+|+..|.+++++|.++.+...+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 46789999999999999999999999999987765
No 136
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=96.61 E-value=0.0025 Score=44.24 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=45.2
Q ss_pred EEEEEecC-cchHHHHHHHHHHhCCccEEEEEEEec-----C----CeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501 131 LLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTE-----G----LVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 131 ~i~v~~~D-r~GlL~~i~~~l~~~~i~I~~a~i~t~-----~----~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
.++|.|.| +.|+++.+++.|+++|+||..++--+. + ......|.++ |.+. ..+.|+++|.+.-..
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~--~~~~---~~~~lr~~L~~la~e 75 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVR--GQPA---DLEALRAALLELASE 75 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEe--CCCC---CHHHHHHHHHHHhcc
Confidence 37899999 999999999999999999987765321 1 1233456665 3332 235555555544444
Q ss_pred CCCC
Q 028501 201 PETD 204 (208)
Q Consensus 201 ~~~~ 204 (208)
-+-|
T Consensus 76 lgvD 79 (84)
T cd04871 76 LNVD 79 (84)
T ss_pred cCce
Confidence 4444
No 137
>PRK06635 aspartate kinase; Reviewed
Probab=96.58 E-value=0.11 Score=46.28 Aligned_cols=110 Identities=16% Similarity=0.260 Sum_probs=67.2
Q ss_pred CeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCC
Q 028501 13 DATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH 90 (208)
Q Consensus 13 ~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~ 90 (208)
+...|+|. ..++||.+++++.+|.+.|++|.....+...+ ..--.|.+... ..+...+.|.+ +..
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~----------~~~~a~~~L~~-~~~-- 327 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRD----------DLEKALELLEE-VKD-- 327 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHH----------HHHHHHHHHHH-HHH--
Confidence 34456665 37799999999999999999999544332232 12223444321 22333333433 110
Q ss_pred CCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEE
Q 028501 91 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
.. + ...|.+.. +...+.+.| .++||++++|.++|++.|+||....
T Consensus 328 -~~----------~------------~~~i~~~~---~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 328 -EI----------G------------AESVTYDD---DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred -Hc----------C------------cceEEEcC---CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 00 0 01122222 336677766 5899999999999999999998864
No 138
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.57 E-value=0.056 Score=36.73 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=37.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeC
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRL 63 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~ 63 (208)
+.+.+..+|+||.|+++...|.++|+||.+-......+ ...-.|+|...
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~ 51 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE 51 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence 35667779999999999999999999999776655543 23345777654
No 139
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=96.56 E-value=0.016 Score=38.01 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=26.4
Q ss_pred CcchHHHHHHHHHHhCCccEEEEEEEecCCe
Q 028501 138 DRPGLLVEIMKIIADVNVDVESAEIDTEGLV 168 (208)
Q Consensus 138 Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~ 168 (208)
|+||.|..|+..|...|+||.++.+....+.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~ 31 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDP 31 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCC
Confidence 6899999999999999999999999984443
No 140
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.54 E-value=0.0089 Score=39.43 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=34.4
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec--CCeeEEEEEE
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVKQTKFFI 60 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~--~~~~~d~F~v 60 (208)
+.+..+|+||.++++++.|+++|+||.+...... ++...-+|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 4678999999999999999999999998876554 2344434444
No 141
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.50 E-value=0.009 Score=38.46 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=30.8
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 51 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~ 51 (208)
+.|.-+|+||-|++++++|.++|+||.+...+...
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 67888999999999999999999999977765554
No 142
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=96.50 E-value=0.012 Score=38.57 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=37.3
Q ss_pred CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 23 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 23 DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
|+||.|.+|+++|...|+||.+-.+....+.-.-.+.++-. |.. ...+.|.+.|++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~--~~~----~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS--GDD----REIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE--S-C----CHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe--eCc----hhHHHHHHHHhc
Confidence 78999999999999999999999998855532222333332 321 345666666665
No 143
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.50 E-value=0.032 Score=36.74 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=31.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 50 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~ 50 (208)
+.+.+..+|+||.+..+++.|.++|+||.+....-.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~ 37 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS 37 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence 578899999999999999999999999997765443
No 144
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=96.48 E-value=0.023 Score=46.17 Aligned_cols=48 Identities=15% Similarity=0.379 Sum_probs=38.6
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC--eEEEEEEE
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--VAKDKFHV 175 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~--~~~~~f~v 175 (208)
+...+-+...|+||.+..|+..|.++|+||..+++..... .+..+..+
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 4567777889999999999999999999999999987653 34444444
No 145
>PRK07334 threonine dehydratase; Provisional
Probab=96.46 E-value=0.02 Score=51.02 Aligned_cols=37 Identities=19% Similarity=0.379 Sum_probs=34.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
.+.|.|.+.||||+|++|++.|++.++||.+++..+.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence 4899999999999999999999999999999998764
No 146
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=96.40 E-value=0.02 Score=48.45 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=47.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCCCC
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALN 183 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~~~ 183 (208)
.|.+-+...|+||-|+++...|+.+|||+.++.+-..+..-++ +|+|+-+|+.-+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~ 249 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD 249 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc
Confidence 6788888889999999999999999999999999988877665 677776777644
No 147
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.38 E-value=0.003 Score=41.40 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=31.8
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeE
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 55 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~ 55 (208)
+.+.+.|+||++++++.+|++.|+||......+.++.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~ 40 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGY 40 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEE
Confidence 567899999999999999999999998776554444443
No 148
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.30 E-value=0.023 Score=41.88 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=43.9
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCC
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAA 181 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~ 181 (208)
.+.+-+...|+||-|+++...|+.+|+|+.++..-+.++..+. .|+|+-+|..
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~ 94 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR 94 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH
Confidence 4677777799999999999999999999999999887666444 6888756654
No 149
>PRK07334 threonine dehydratase; Provisional
Probab=96.22 E-value=0.049 Score=48.58 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=47.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec----CCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~----~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
+.|.|.+.||+|+|++|+.+|++.++||.+....+. .++ +.-.|.+.-. +.+.++++...|++
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~-------d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR-------DAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 689999999999999999999999999999988765 333 3333444422 23566777777665
No 150
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=96.19 E-value=0.028 Score=53.51 Aligned_cols=71 Identities=20% Similarity=0.225 Sum_probs=59.6
Q ss_pred EEEEEEe-cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCC
Q 028501 130 SLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRP 201 (208)
Q Consensus 130 ~~i~v~~-~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~-~~~~l~~~l~~~l~~~ 201 (208)
..++|.. +|++|+|..++.+|+.+|.+|.+|++.+ ++.+...|.|.. .|.+.... .+++++.++...++-+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDP 620 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcc
Confidence 4677777 9999999999999999999999999999 778889999997 67776654 6788888877666543
No 151
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.09 E-value=0.012 Score=52.65 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=48.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHH
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLV 191 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~ 191 (208)
....|-+.-.|+||.++.|+.+|+++|+||.+.+..+.++.+..+|.++. +++++..++|+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~---~~~~~~~~~i~ 397 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA---DYAEEALDALK 397 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC---CCcHHHHHHHH
Confidence 45778889999999999999999999999999999988877777776643 43444555554
No 152
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=96.05 E-value=0.56 Score=41.64 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=67.6
Q ss_pred CCeEEEEEE---eCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501 12 SDATIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 88 (208)
Q Consensus 12 ~~~~~v~v~---~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~ 88 (208)
++...|+|. ..+++|.++++..+|.++|++|...........+ .|.|... ..++..+.|.+.+..
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~I--s~~V~~~----------d~~~a~~~L~~~~~~ 325 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSI--SLTVDET----------DADEAVRALKDQSGA 325 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceE--EEEEeHH----------HHHHHHHHHHHHHHh
Confidence 345678888 4788999999999999999999833221111122 3555321 223333444442211
Q ss_pred CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501 89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
. . ...|.++. +...|.+.|. ++||+++++.++|++.|+||....
T Consensus 326 ~--------------~------------~~~i~~~~---~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~ 372 (401)
T TIGR00656 326 A--------------G------------LDRVEVEE---GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG 372 (401)
T ss_pred c--------------C------------CceEEEeC---CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence 0 0 01122222 3466777775 789999999999999999998543
No 153
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=95.98 E-value=0.045 Score=48.66 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=46.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCCCChH
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALNSS 185 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~~~~~ 185 (208)
.+.+-+...|+||.|+++-..|+.+|||+.++..-..+++-+. .|+++-+|..-++.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~ 354 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAE 354 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHH
Confidence 5666677789999999999999999999999999988777555 78887677653333
No 154
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.91 E-value=0.064 Score=35.33 Aligned_cols=61 Identities=15% Similarity=0.215 Sum_probs=40.6
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
+.|.-+||||-|..++.+++. |.||.+.+-...+.....+++.... .+++..+.+.+.|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 357789999999999999999 9999977665443322333333222 123566667766655
No 155
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.81 E-value=0.1 Score=50.08 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=51.9
Q ss_pred EEEeecCCCC-eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC-C-eeEEEEEEeeCCCCCCCCCHHHHHHHHH
Q 028501 4 VLIDQDSNSD-ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-S-VKQTKFFITRLDTGRKVEDPDLLERIRL 80 (208)
Q Consensus 4 V~~~~~~~~~-~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~-~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~ 80 (208)
|.|+...... ...|.|.+.||+|+|++|+.+++..++||....+.+.. + .+.-.|.|.-. +...+.++..
T Consensus 655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~-------~~~~L~~l~~ 727 (743)
T PRK10872 655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY-------NLQVLGRVLG 727 (743)
T ss_pred eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC-------CHHHHHHHHH
Confidence 4565432222 34789999999999999999999999999999987764 3 34444555433 2356666666
Q ss_pred HHHH
Q 028501 81 TIIN 84 (208)
Q Consensus 81 ~L~~ 84 (208)
.|+.
T Consensus 728 ~L~~ 731 (743)
T PRK10872 728 KLNQ 731 (743)
T ss_pred HHhc
Confidence 6654
No 156
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.78 E-value=0.041 Score=52.71 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=40.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~~~f~v~ 176 (208)
.+.|.|.+.||+|+|++|+.+|++.++||.++++.+.. +.+...|.+.
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie 715 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE 715 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE
Confidence 57899999999999999999999999999999987753 4444455553
No 157
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.72 E-value=0.07 Score=50.95 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=40.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC-eEEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~-~~~~~f~v~ 176 (208)
.+.|.|.+.||+|+|++|+.+|++.++||.++++.+..+ .+...|.+.
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie 674 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT 674 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE
Confidence 578999999999999999999999999999999877653 344445553
No 158
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.60 E-value=0.083 Score=50.35 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=39.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC-CeEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHV 175 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~-~~~~~~f~v 175 (208)
.+.|.|.+.||+|+|++|+.+|+..++||.++++.+.. +.....|.+
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~i 657 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITV 657 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEE
Confidence 67999999999999999999999999999999998764 333334444
No 159
>PRK06291 aspartate kinase; Provisional
Probab=95.47 E-value=1.5 Score=39.95 Aligned_cols=112 Identities=12% Similarity=0.187 Sum_probs=70.4
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501 12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 88 (208)
Q Consensus 12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~ 88 (208)
++...|+|.+. +.+|+++++.++|.++|++|.-....+....+ .|.|... ..++..+.|.+.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~~----------d~~~av~~L~~~~~~ 386 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDEA----------DLEKALKALRREFGE 386 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeHH----------HHHHHHHHHHHHHHH
Confidence 34567888764 68999999999999999999854333322222 2555422 122333344443321
Q ss_pred CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501 89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT 164 (208)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t 164 (208)
. . ...|.+.+ +...|.+.|. +++|+++++..+|++.|++|......+
T Consensus 387 ~----------------~----------~~~i~~~~---~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs 436 (465)
T PRK06291 387 G----------------L----------VRDVTFDK---DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS 436 (465)
T ss_pred h----------------c----------CcceEEeC---CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence 0 0 00122222 3367888776 789999999999999999998665443
No 160
>PRK08210 aspartate kinase I; Reviewed
Probab=95.41 E-value=0.98 Score=40.20 Aligned_cols=100 Identities=17% Similarity=0.249 Sum_probs=64.4
Q ss_pred CCeEEEEEEeCCc-ccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCC
Q 028501 12 SDATIVQLSFGDR-LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH 90 (208)
Q Consensus 12 ~~~~~v~v~~~Dr-pGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~ 90 (208)
++...|+|...+. ||.+++|+..|.++|++|.....+ .+.+ .|.+.. +..++..+.|.+ +.
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~~i--s~~v~~----------~~~~~a~~~l~~-~~--- 330 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PTEV--VFTVSD----------EDSEKAKEILEN-LG--- 330 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--CceE--EEEEcH----------HHHHHHHHHHHH-hC---
Confidence 3556777876554 999999999999999999965333 2222 254432 122333333333 10
Q ss_pred CCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEE
Q 028501 91 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVES 159 (208)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~ 159 (208)
. .+.+.. +...|.|.|. ++||+++++..+|++.|++|..
T Consensus 331 ~---------------------------~v~~~~---~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 331 L---------------------------KPSVRE---NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred C---------------------------cEEEeC---CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 0 122222 2356777665 7899999999999999999974
No 161
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.30 E-value=0.37 Score=32.06 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=32.5
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeC
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRL 63 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~ 63 (208)
+.+..+|+||-|+.+...|+++|+|+.+-.-.-..+ ..--.|+|.-.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~ 49 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE 49 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE
Confidence 345558999999999999999999999553333222 22234666544
No 162
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.23 E-value=0.6 Score=32.78 Aligned_cols=55 Identities=15% Similarity=0.352 Sum_probs=39.7
Q ss_pred eecCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--e-eEEEEEEeeC
Q 028501 7 DQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--V-KQTKFFITRL 63 (208)
Q Consensus 7 ~~~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~-~~d~F~v~~~ 63 (208)
.....++.+.|.+..+|+||-|+++...|+.+|+|+. +|.+.+. . .--.|+|.-.
T Consensus 7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt--~IeSRP~~~~~~~Y~FfVDie 64 (90)
T cd04931 7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLT--HIESRPSRLNKDEYEFFINLD 64 (90)
T ss_pred cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEE
Confidence 3344445567777779999999999999999999999 5655443 1 2234777654
No 163
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=95.22 E-value=0.16 Score=37.46 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=36.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eE
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQ 55 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~ 55 (208)
++-|..+|+||=|++|+.+|.++++|+..+..|++.+. ++
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAl 111 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKAL 111 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEE
Confidence 67888999999999999999999999999999887764 54
No 164
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.21 E-value=0.22 Score=47.59 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=50.9
Q ss_pred EEEeecCCC-CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCee-EEEEEEeeCCCCCCCCCHHHHHHHHHH
Q 028501 4 VLIDQDSNS-DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLT 81 (208)
Q Consensus 4 V~~~~~~~~-~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~-~d~F~v~~~~~g~~~~~~~~~~~l~~~ 81 (208)
|.|+..... -.+.|.|.+.||+|+|++|+.+|+..++||.+..+.+..++. .-.|.|.-. +...+..+...
T Consensus 599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~ii~~ 671 (683)
T TIGR00691 599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK-------NYKHLLKIMLK 671 (683)
T ss_pred EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC-------CHHHHHHHHHH
Confidence 456543222 235789999999999999999999999999999998775443 323444432 23555666655
Q ss_pred HHH
Q 028501 82 IIN 84 (208)
Q Consensus 82 L~~ 84 (208)
|..
T Consensus 672 L~~ 674 (683)
T TIGR00691 672 IKT 674 (683)
T ss_pred HhC
Confidence 544
No 165
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=95.21 E-value=0.08 Score=41.43 Aligned_cols=48 Identities=10% Similarity=0.112 Sum_probs=39.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL 63 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~ 63 (208)
-+.+.+.++||.|.++++.+++.|.||..++.+..+++-....|..-.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE 51 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE 51 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence 478889999999999999999999999999999988753333555444
No 166
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=95.20 E-value=0.078 Score=41.50 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=37.3
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
-+.+.+.++||.|.+++..+++.|.||.++.....++......|..
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmE 49 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYME 49 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEE
Confidence 4778899999999999999999999999999877665444444443
No 167
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.19 E-value=0.24 Score=47.36 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=51.9
Q ss_pred EEEeecCCC-CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHH
Q 028501 4 VLIDQDSNS-DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLT 81 (208)
Q Consensus 4 V~~~~~~~~-~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~ 81 (208)
|.|+..... -...|.|.+.||+|+|++|+.+++..++||.+....+..+. +.-.|.+.-. +.+.+.+|...
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~-------~~~~L~~i~~~ 687 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR-------DRVHLANIMRK 687 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC-------CHHHHHHHHHH
Confidence 456543222 23478999999999999999999999999999998776644 3334555433 23566666666
Q ss_pred HHH
Q 028501 82 IIN 84 (208)
Q Consensus 82 L~~ 84 (208)
|+.
T Consensus 688 Lr~ 690 (702)
T PRK11092 688 IRV 690 (702)
T ss_pred HhC
Confidence 554
No 168
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=95.04 E-value=0.099 Score=49.63 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=39.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHV 175 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v 175 (208)
.+.|.|.+.||+|+|++|+++|+..++||.++...+..++.. -.|.+
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i 674 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTI 674 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEE
Confidence 689999999999999999999999999999999988644433 33444
No 169
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.01 E-value=0.1 Score=34.35 Aligned_cols=33 Identities=15% Similarity=0.421 Sum_probs=29.0
Q ss_pred EEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 133 YIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 133 ~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
.|.-+||||-|..+++.|+. |.||..++-...+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~ 34 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQG 34 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC
Confidence 57789999999999999999 9999998876544
No 170
>PLN02551 aspartokinase
Probab=95.01 E-value=1 Score=41.62 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=73.5
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501 12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 88 (208)
Q Consensus 12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~ 88 (208)
++.+.|+|.+. +.+|.++++.+.|.++|++|.-. .+....+ .|.+...+ + ...+.+++.+.+.+..
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe~sI--s~~v~~~~----~---~~~~~i~~~l~~l~~e 432 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEVSI--SLTLDPSK----L---WSRELIQQELDHLVEE 432 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccCCEE--EEEEehhH----h---hhhhhHHHHHHHHHHH
Confidence 35578888765 68999999999999999999944 4433222 36564331 1 1122333333332211
Q ss_pred CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec--CcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~--Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
+ . + + ..|.+.. +...|.+.|. .++|+++.+..+|++.|+||......+.
T Consensus 433 --------l------~-~-------~---~~V~v~~---~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaS- 483 (521)
T PLN02551 433 --------L------E-K-------I---AVVNLLQ---GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGAS- 483 (521)
T ss_pred --------h------h-c-------C---CeEEEeC---CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCC-
Confidence 0 0 0 0 1133333 2355666654 6899999999999999999987765431
Q ss_pred CeEEEEEEEE
Q 028501 167 LVAKDKFHVS 176 (208)
Q Consensus 167 ~~~~~~f~v~ 176 (208)
...-.|.|.
T Consensus 484 -einIS~vV~ 492 (521)
T PLN02551 484 -KVNISLIVN 492 (521)
T ss_pred -CcEEEEEEe
Confidence 222336664
No 171
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=94.84 E-value=0.25 Score=46.99 Aligned_cols=74 Identities=18% Similarity=0.146 Sum_probs=51.2
Q ss_pred EEEeecC-CCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEE-EEEeeCCCCCCCCCHHHHHHHHHH
Q 028501 4 VLIDQDS-NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTK-FFITRLDTGRKVEDPDLLERIRLT 81 (208)
Q Consensus 4 V~~~~~~-~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~-F~v~~~~~g~~~~~~~~~~~l~~~ 81 (208)
|.|+... ..-...|.|.+.||+|+|++|+.+|+..+.||......+..+.+..+ |.+.-. +...+.++...
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~-------n~~~L~~i~~~ 688 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK-------NLNHLGRVLAR 688 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC-------cHHHHHHHHHH
Confidence 4565553 23346899999999999999999999999999988887764544332 333322 23455666655
Q ss_pred HHH
Q 028501 82 IIN 84 (208)
Q Consensus 82 L~~ 84 (208)
|..
T Consensus 689 l~~ 691 (701)
T COG0317 689 LKQ 691 (701)
T ss_pred Hhc
Confidence 544
No 172
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=94.58 E-value=0.079 Score=34.75 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=32.7
Q ss_pred eEEEEEEec----CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 129 RSLLYIETA----DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~~----Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
...|.|.|. |.||+++.++..|++.|++|..+. + ...+.+.|.
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~ 52 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVK 52 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEe
Confidence 467777777 899999999999999999998887 2 134455564
No 173
>PRK09181 aspartate kinase; Validated
Probab=94.37 E-value=2.6 Score=38.58 Aligned_cols=106 Identities=11% Similarity=0.177 Sum_probs=67.5
Q ss_pred CeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501 13 DATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 89 (208)
Q Consensus 13 ~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 89 (208)
+.+.|+|.+. +.+|+.+++.+.|.++|++|. .+.+....+ .|.+.. . .+.++++...|...+..
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~si--s~~v~~----~----~~~~~~~~~~L~~~~~~- 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNANTI--THYLWG----S----LKTLKRVIAELEKRYPN- 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCcEE--EEEEcC----C----hHHHHHHHHHHHHhcCC-
Confidence 5567787654 689999999999999999998 444443222 355532 1 12233443344332210
Q ss_pred CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecC--cchHHHHHHHHHHhCCccEEEEEEE
Q 028501 90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD--RPGLLVEIMKIIADVNVDVESAEID 163 (208)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~D--r~GlL~~i~~~l~~~~i~I~~a~i~ 163 (208)
.+|.. .+...|.+.|.. +||+.+.+..+|++.|+||......
T Consensus 395 ----------------------------~~i~~----~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg 438 (475)
T PRK09181 395 ----------------------------AEVTV----RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS 438 (475)
T ss_pred ----------------------------ceEEE----CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence 01221 223567776654 8999999999999999999776644
No 174
>PRK06382 threonine dehydratase; Provisional
Probab=94.36 E-value=0.15 Score=45.60 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=32.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 163 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~ 163 (208)
.+.+.|.-+|+||.|.+|++.|.++|+||.++...
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 68899999999999999999999999999988764
No 175
>PRK08818 prephenate dehydrogenase; Provisional
Probab=94.31 E-value=0.15 Score=45.18 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=39.6
Q ss_pred CeEEEEEEec-CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCC
Q 028501 128 KRSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG 179 (208)
Q Consensus 128 ~~~~i~v~~~-Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g 179 (208)
..+.+.+.-+ |+||.|++|+..|+++||||.++.+........- |+++-.+
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~ 345 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEP 345 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEec
Confidence 4677788776 9999999999999999999999999332333333 8887544
No 176
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=94.23 E-value=2.1 Score=41.85 Aligned_cols=115 Identities=12% Similarity=0.190 Sum_probs=71.0
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501 12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 88 (208)
Q Consensus 12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~ 88 (208)
++...|+|.+. .+||+++++..+|.++|++|.-....+....+ .|.|... ..++....|.+.+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sI--sf~V~~~----------d~~~av~~L~~~f~~ 380 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSI--SFCVPQS----------DAAKAKRALEEEFAL 380 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceE--EEEEeHH----------HHHHHHHHHHHHHHH
Confidence 45678888864 68999999999999999999744433222222 3555432 122333334433311
Q ss_pred CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEE
Q 028501 89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEID 163 (208)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~ 163 (208)
.+ ... . ...|.+.+ +...|.+.|. ++||+++++..+|++.|+||......
T Consensus 381 -------el------~~~------~---~~~i~~~~---~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqg 433 (819)
T PRK09436 381 -------EL------KEG------L---LEPLEVEE---NLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQG 433 (819)
T ss_pred -------Hh------ccC------C---cceEEEeC---CEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEec
Confidence 00 000 0 01133322 3467888776 78999999999999999999877543
No 177
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=94.19 E-value=0.22 Score=32.63 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=35.0
Q ss_pred CCCeEEEEEEeC----CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEee
Q 028501 11 NSDATIVQLSFG----DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 62 (208)
Q Consensus 11 ~~~~~~v~v~~~----DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~ 62 (208)
..++..|+|.++ |.||++++++..|++.|++|.... .+.-+.|.|..
T Consensus 3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-----S~~~~~ilV~~ 53 (65)
T PF13840_consen 3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-----SEISISILVKE 53 (65)
T ss_dssp ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-----ESSEEEEEEEG
T ss_pred cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-----EeeeEEEEEeH
Confidence 346678999988 799999999999999999998554 23334455653
No 178
>PRK09034 aspartate kinase; Reviewed
Probab=94.15 E-value=4.3 Score=36.84 Aligned_cols=121 Identities=15% Similarity=0.208 Sum_probs=71.3
Q ss_pred CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501 13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 89 (208)
Q Consensus 13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 89 (208)
+.+.|++.+ .+++|+++++.+.|.++|++|.-. .+....+ .|.+...+ +. ...+..+...|...+.
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~ss~~si--s~~v~~~~----~~-~a~~~~l~~el~~~~~-- 375 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PSGIDDL--SIIIRERQ----LT-PKKEDEILAEIKQELN-- 375 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cCCCcEE--EEEEeHHH----hh-HHHHHHHHHHHHHhhC--
Confidence 456777774 678999999999999999999954 2221122 36665321 10 0000222222221110
Q ss_pred CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
...|.+.. +...|.+.|. ++||+++++..+|++.|+||..+...+.
T Consensus 376 ---------------------------~~~I~~~~---~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S- 424 (454)
T PRK09034 376 ---------------------------PDELEIEH---DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS- 424 (454)
T ss_pred ---------------------------CceEEEeC---CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC-
Confidence 01123222 2367777554 7899999999999999999988865431
Q ss_pred CeEEEEEEEE
Q 028501 167 LVAKDKFHVS 176 (208)
Q Consensus 167 ~~~~~~f~v~ 176 (208)
+ ..-.|.|.
T Consensus 425 e-~~Is~vV~ 433 (454)
T PRK09034 425 E-ISIMFGVK 433 (454)
T ss_pred c-ceEEEEEc
Confidence 1 22346664
No 179
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=94.11 E-value=1.9 Score=39.13 Aligned_cols=119 Identities=19% Similarity=0.266 Sum_probs=71.9
Q ss_pred CCeEEEEEEeCC---cccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501 12 SDATIVQLSFGD---RLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 88 (208)
Q Consensus 12 ~~~~~v~v~~~D---rpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~ 88 (208)
.+.+.|+|.+.. .+|.++++...|.++|+++.--........ -+|.+...+ ..+....|.+.+..
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~----------~~~a~~~l~~~~~~ 372 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESD----------APRALRALLEEKLE 372 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhh----------HHHHHHHHHHHHhh
Confidence 566778887543 459999999999999999983322222233 346665331 12333344442321
Q ss_pred CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
. . . ++.++.+ ...+.+.|. ..||+.+.+..+|++.++||.....
T Consensus 373 ~----------------~----------~-~v~~~~~---~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~iss--- 419 (447)
T COG0527 373 L----------------L----------A-EVEVEEG---LALVSIVGAGMRSNPGVAARIFQALAEENINIIMISS--- 419 (447)
T ss_pred h----------------c----------c-eEEeeCC---eeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEc---
Confidence 0 0 0 1222222 245555554 6789999999999999999998872
Q ss_pred CCeEEEEEEEE
Q 028501 166 GLVAKDKFHVS 176 (208)
Q Consensus 166 ~~~~~~~f~v~ 176 (208)
....-.|.|.
T Consensus 420 -Se~~Is~vV~ 429 (447)
T COG0527 420 -SEISISFVVD 429 (447)
T ss_pred -CCceEEEEEc
Confidence 2233456674
No 180
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.06 E-value=0.18 Score=46.56 Aligned_cols=62 Identities=11% Similarity=0.256 Sum_probs=43.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHH
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLV 191 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~ 191 (208)
...+-+...|+||.+..|+..|.++++||..+++.........++.+.-++ +++++..++|+
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~-~v~~~~l~~i~ 512 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ-PVPDEVLEEIK 512 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC-CCCHHHHHHHh
Confidence 455566779999999999999999999999999887544333333333222 44566556554
No 181
>PRK06545 prephenate dehydrogenase; Validated
Probab=94.00 E-value=0.12 Score=45.41 Aligned_cols=50 Identities=20% Similarity=0.413 Sum_probs=40.9
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 127 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 127 ~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
..++.+.|.-+|+||-++.|+..|++.|+||.++++.-..+...-++.++
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 45789999999999999999999999999999999976555444444443
No 182
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.00 E-value=0.24 Score=45.81 Aligned_cols=63 Identities=13% Similarity=0.307 Sum_probs=43.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHH
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLV 191 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~ 191 (208)
+...+-+...|+||.+..|+..|+++++||..+++.........++.+.-+ .+++++..++|+
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D-~~v~~~~l~~i~ 513 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD-DPVPEEVLEELR 513 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC-CCCCHHHHHHHh
Confidence 345566677999999999999999999999999998754333333333212 244555555554
No 183
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.89 E-value=0.042 Score=38.06 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=27.5
Q ss_pred EEEEEeCC-cccHHHHHHHHHHHCCceEEEE
Q 028501 16 IVQLSFGD-RLGALIDTMNALKDLGLDVAKG 45 (208)
Q Consensus 16 ~v~v~~~D-rpGLl~~i~~~L~~~gl~I~~a 45 (208)
.|+|.+.| ..|++++++++|+++|+||.+-
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I 31 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRI 31 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 37999999 9999999999999999999843
No 184
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.86 E-value=0.71 Score=31.74 Aligned_cols=61 Identities=5% Similarity=0.048 Sum_probs=37.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC-CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~-~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
.+.|.-+|+||-|++++.+|. +.||....-.... +...-.+.+... ++ ++..+.+.+.|++
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~--~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA--NG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC--Cc----HHHHHHHHHHHHH
Confidence 577888999999999999999 6666644443332 222222333322 21 2556667777655
No 185
>PRK11898 prephenate dehydratase; Provisional
Probab=93.66 E-value=0.37 Score=41.02 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=42.6
Q ss_pred eEEEEEEecC-cchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCC
Q 028501 129 RSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAA 181 (208)
Q Consensus 129 ~~~i~v~~~D-r~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~ 181 (208)
.+.+-+.-.+ +||-|+++-..|+++|+|+.++......++.+. .|+++-+|..
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~ 250 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHI 250 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccC
Confidence 4666666655 699999999999999999999999887766554 6888767765
No 186
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.64 E-value=0.98 Score=30.42 Aligned_cols=45 Identities=20% Similarity=0.465 Sum_probs=33.1
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC---eeEEEEEEeeC
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS---VKQTKFFITRL 63 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~---~~~d~F~v~~~ 63 (208)
+.+..+|+||-|+++...|..+|+|+. +|.+.+. ..--.|+|.-.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~--~IeSRP~~~~~~~y~F~id~e 50 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVV--HIESRKSKRRSSEFEIFVDCE 50 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEE
Confidence 344458999999999999999999999 5555543 12334777654
No 187
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=93.58 E-value=1.1 Score=30.01 Aligned_cols=45 Identities=18% Similarity=0.467 Sum_probs=33.2
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--e-eEEEEEEeeC
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--V-KQTKFFITRL 63 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~-~~d~F~v~~~ 63 (208)
+.+..+|+||-|+++...|+.+|+|+. +|.+.+- . .--.|+|.-.
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt--~IeSRP~~~~~~~y~Ffvd~~ 50 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLT--HIESRPSRRNGSEYEFFVDCE 50 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEE--EEECCCCCCCCceEEEEEEEE
Confidence 444558999999999999999999999 6666543 1 2234777644
No 188
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=93.49 E-value=0.31 Score=38.03 Aligned_cols=68 Identities=12% Similarity=0.290 Sum_probs=46.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
..+.+.-.|.||.|..++..|+..|.||.+..+............+.-.| ++...+++.+.|...++.
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g---~~~~~EQi~kQL~kLidV 72 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG---DEQVLEQIIKQLNKLIDV 72 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC---CcchHHHHHHHHHhhccc
Confidence 46788889999999999999999999999999876544433333332233 122345555555554443
No 189
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=93.30 E-value=0.75 Score=37.32 Aligned_cols=44 Identities=11% Similarity=0.287 Sum_probs=36.7
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--eeE
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQ 55 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~~~ 55 (208)
.....+.+.-.|+||.+..++..|.++|+||...++..... .++
T Consensus 146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai 191 (208)
T TIGR00719 146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIAL 191 (208)
T ss_pred CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEE
Confidence 34456777789999999999999999999999999988653 454
No 190
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.23 E-value=0.48 Score=42.61 Aligned_cols=51 Identities=25% Similarity=0.347 Sum_probs=40.9
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 127 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 127 ~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
...+.+.+...|+||.|++|+..|+++|++|.++......+....++.+++
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 346889999999999999999999999999999877654334445566664
No 191
>PLN02317 arogenate dehydratase
Probab=93.21 E-value=0.64 Score=41.25 Aligned_cols=53 Identities=13% Similarity=0.270 Sum_probs=43.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe---------------EEEEEEEEeCCCC
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV---------------AKDKFHVSYGGAA 181 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~---------------~~~~f~v~~~g~~ 181 (208)
.+.|-+.-.|+||.|+++..+|+.+|||+.++..-....+ ..=.|||+-+|..
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~ 350 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM 350 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCc
Confidence 4777777789999999999999999999999998876554 2237888767765
No 192
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=92.97 E-value=4.9 Score=36.23 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=65.5
Q ss_pred CCeEEEEEEeCC-c-ccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501 12 SDATIVQLSFGD-R-LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 89 (208)
Q Consensus 12 ~~~~~v~v~~~D-r-pGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 89 (208)
++...|+|.+.+ . +|.++++.+.|.++|++|......+....+ .|.+... ..++..+.|......
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~sI--s~~I~~~----------~~~~a~~~L~~~~~~- 366 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETSI--SFTVDKE----------DADQAKTLLKSELNL- 366 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCceE--EEEEEHH----------HHHHHHHHHHHHHHh-
Confidence 345677777643 3 799999999999999999855422222121 3545322 112222223221100
Q ss_pred CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501 90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
. . ...|.+.. +...+.+.|. ++||+++++.++|++.|+||....
T Consensus 367 --~-------------~----------~~~I~~~~---~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 367 --S-------------A----------LSSVEVEK---GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred --c-------------C----------cceEEEcC---CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 0 0 01122222 3367777654 789999999999999999998776
No 193
>PRK06382 threonine dehydratase; Provisional
Probab=92.92 E-value=0.99 Score=40.31 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=44.9
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe----cCC-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT----EGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t----~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
...+.+.|.-+|+||-|.+++..|.++|+||.+..... ... ...-+|.|... +++..+.|.+.|++
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE 398 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999766542 222 33334555432 12444566666655
No 194
>PRK07431 aspartate kinase; Provisional
Probab=92.82 E-value=8.4 Score=36.09 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=67.0
Q ss_pred CCeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecCC--eeEE-EEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501 12 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQT-KFFITRLDTGRKVEDPDLLERIRLTIINNLL 87 (208)
Q Consensus 12 ~~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~~~d-~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~ 87 (208)
++...|++. .++.+|+++++.+.|.++|++|..-......+ +..+ .|.+... .+.+....+++ +.
T Consensus 437 ~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~----------~~~~~~~~l~~-l~ 505 (587)
T PRK07431 437 RNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKE----------DREAAQKVLRE-LA 505 (587)
T ss_pred CCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHH----------HHHHHHHHHHH-HH
Confidence 345566665 47889999999999999999999443321112 1122 2444321 22233333333 21
Q ss_pred cCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501 88 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
...+ ...+.+.. +...|.+.|. .+||+++++.++|++.|+++....
T Consensus 506 ~~~~-------------------------~~~i~~~~---~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 506 KQLP-------------------------GAEVEDGP---AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred HhcC-------------------------CceEEEeC---CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 1000 00122222 3467888886 889999999999999999997666
No 195
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=92.82 E-value=0.73 Score=41.54 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=43.6
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEEEeCCCC
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAA 181 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v~~~g~~ 181 (208)
.+.|-+...|+||-|+++...|+++|+|+.++..-....... -.|+|+-+|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~ 69 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS 69 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc
Confidence 567777779999999999999999999999999887655433 47888866765
No 196
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=92.69 E-value=0.35 Score=40.35 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=39.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEE--EEEEe
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQT--KFFIT 61 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d--~F~v~ 61 (208)
...+.+...|-||.+.+|+++|+..|+||.+--+--+.+..+- +.+++
T Consensus 77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~ 126 (309)
T KOG2663|consen 77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQ 126 (309)
T ss_pred ceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEe
Confidence 4578999999999999999999999999998887776666543 44555
No 197
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.64 E-value=0.22 Score=33.67 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=43.5
Q ss_pred EEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--Cee--EEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 17 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVK--QTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 17 v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~--~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
|.+.++-||-.|++++-+|..+|+-|.+|+|.... +.- +-.|.+.+. +..+........+.+.+..
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~--~~~~~~~~~r~~i~drv~~ 72 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH--DRLKLGGRQRSKVVDRVTK 72 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC--CccccchHHHHHHHHHHHH
Confidence 56788999999999999999999999999996543 221 223444333 3334333334555555444
No 198
>PRK09084 aspartate kinase III; Validated
Probab=92.63 E-value=5.4 Score=36.19 Aligned_cols=102 Identities=13% Similarity=0.144 Sum_probs=61.1
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501 12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 88 (208)
Q Consensus 12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~ 88 (208)
++...|+|.+. +.+|.++++...|.++|++|.--. +....+ +|.+...+ .. ......+...+.+.+..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse~sI--s~~i~~~~--~~---~~~~~~~~~~l~~el~~ 374 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSEVSV--SLTLDTTG--ST---STGDTLLTQALLTELSQ 374 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccCcEE--EEEEechh--hh---hhhhHHHHHHHHHHHhc
Confidence 45667888754 689999999999999999999443 332222 36665331 10 01111222222222211
Q ss_pred CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhC
Q 028501 89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADV 153 (208)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~ 153 (208)
+ .+|.+.+ +...|.+.|. ++||+++++..+|++.
T Consensus 375 -------------------------~---~~i~~~~---~va~IsvvG~gm~~~~gv~arif~aL~~~ 411 (448)
T PRK09084 375 -------------------------L---CRVEVEE---GLALVALIGNNLSKACGVAKRVFGVLEPF 411 (448)
T ss_pred -------------------------C---CeEEEEC---CeEEEEEECCCcccCcChHHHHHHHHHhC
Confidence 0 1133322 3467888776 7899999999999874
No 199
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.57 E-value=0.68 Score=31.83 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=25.9
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 164 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t 164 (208)
++.+.-+|+||-|++++.+|+ +.||....-..
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~ 34 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRY 34 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEc
Confidence 578889999999999999999 66666555544
No 200
>PRK06545 prephenate dehydrogenase; Validated
Probab=92.51 E-value=0.65 Score=40.71 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=40.7
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEe
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~ 61 (208)
+.+..|.|.-+|+||-+++++..|...|+||.+-+|....+...-++.+.
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 35678999999999999999999999999999999977665433334443
No 201
>PRK08198 threonine dehydratase; Provisional
Probab=92.39 E-value=1.8 Score=38.47 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=32.7
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT 49 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t 49 (208)
....+.|.-+|+||-|++++..+++.|.||.+.....
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 4458899999999999999999999999999877654
No 202
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.38 E-value=0.35 Score=43.33 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=40.1
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEE
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKF 58 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F 58 (208)
+...|.+.-+|+||.++.|+..|+++|+||...+..+.++.++-+|
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii 382 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI 382 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE
Confidence 5568888999999999999999999999999999988887775444
No 203
>PRK09224 threonine dehydratase; Reviewed
Probab=92.34 E-value=9.1 Score=35.29 Aligned_cols=129 Identities=14% Similarity=0.199 Sum_probs=75.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCc
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES 93 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~ 93 (208)
-..+.|.-|||||-|..++..|. +.||...+-...+.....+|+..... +. +...+.|.+.|++.=-......
T Consensus 328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~-~~----~~~~~~i~~~L~~~gy~~~~ls 400 (504)
T PRK09224 328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLS-RG----QEERAEIIAQLRAHGYPVVDLS 400 (504)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeC-Ch----hhHHHHHHHHHHHcCCCeEECC
Confidence 45788889999999999999999 68888666554443334445443321 21 1236777777765110000000
Q ss_pred hhhhh---ccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 94 SEQLA---MGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 94 ~~~l~---~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
...++ .|-+.+=+. +...+...+.+.-+.|||-|.+....|. -+-||...+-...+
T Consensus 401 ~ne~~k~h~r~~~g~~~----------------~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr~~~ 459 (504)
T PRK09224 401 DDELAKLHVRYMVGGRP----------------PKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYRNHG 459 (504)
T ss_pred CCHHHHHHHHhccCCCC----------------CCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEccCC
Confidence 00111 010111010 0112346788999999999999999777 67788888875333
No 204
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.19 E-value=1.9 Score=28.95 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=28.9
Q ss_pred ecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 136 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 136 ~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
..++||++++|..+|+++|++|..+.. ++ ..-.|.+..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~---s~-~~iSftv~~ 48 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITT---SE-ISVALTLDN 48 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEee---cC-CEEEEEEec
Confidence 468899999999999999999998853 22 333466653
No 205
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=92.17 E-value=0.73 Score=35.97 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=47.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
-.+.+.-.|.||.|+++++.|+..|+||.+-.+.-+.+.-+-...+.-. |. +...+++.+.|.+..
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g~----~~~~EQi~kQL~kLi 70 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--GD----EQVLEQIIKQLNKLI 70 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--CC----cchHHHHHHHHHhhc
Confidence 4678888999999999999999999999988887665532322333222 32 245677877777744
No 206
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=92.00 E-value=0.73 Score=40.63 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=32.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 163 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~ 163 (208)
...+.|.-+|+||.|.++++.+++.|.||.++...
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 46899999999999999999999999999998655
No 207
>PRK11899 prephenate dehydratase; Provisional
Probab=91.21 E-value=4 Score=34.74 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=42.8
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
.+.+.+..+|+||.|+.+.+.|+..|+|+..-.-.=.++. +--.|+|.-. |.. .+ ..++++|++
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~e--g~~-~d----~~v~~aL~~ 258 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIE--GHP-ED----RNVALALEE 258 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEE--CCC-CC----HHHHHHHHH
Confidence 4666666689999999999999999999994433333332 3345888654 653 33 234555554
No 208
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=91.00 E-value=1.3 Score=40.20 Aligned_cols=54 Identities=13% Similarity=0.056 Sum_probs=44.3
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE--EEEEEEeCCCC
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK--DKFHVSYGGAA 181 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~--~~f~v~~~g~~ 181 (208)
..+.|-+.-.|+||-|+++.+.|+++|+|+.++..-....... -.|+|+-+|..
T Consensus 30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~ 85 (464)
T TIGR01270 30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFH 85 (464)
T ss_pred ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCH
Confidence 4577777779999999999999999999999999988765544 46888766654
No 209
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.61 E-value=2.7 Score=28.22 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=37.0
Q ss_pred cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 028501 137 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 196 (208)
Q Consensus 137 ~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~ 196 (208)
.+.||++++|..+|+++|+++..+.. ++ ..-.|.+..+..-+.++..++|.+.|..
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDPDPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence 47799999999999999999998853 22 3334666543211334344566666554
No 210
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=90.16 E-value=1.1 Score=34.91 Aligned_cols=34 Identities=24% Similarity=0.422 Sum_probs=28.4
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEEE
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID 163 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~ 163 (208)
..+..+-.+.||+++.++..++++||+|..+-..
T Consensus 96 iei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 96 IEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred EEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 4455556788999999999999999999988754
No 211
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=90.12 E-value=3.2 Score=36.60 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=30.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEE
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN 48 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~ 48 (208)
..+.|.-+|+||.|+++++.+++.|.||.+-.-.
T Consensus 306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 4788999999999999999999999999976544
No 212
>PRK12483 threonine dehydratase; Reviewed
Probab=90.07 E-value=16 Score=33.93 Aligned_cols=137 Identities=10% Similarity=0.144 Sum_probs=73.1
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHH-HHHHHHHHHhhccCCC
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLL-ERIRLTIINNLLKYHP 91 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~-~~l~~~L~~~l~~~~~ 91 (208)
....+.|.-+||||-|.+++..|... ||.+..-......-..+++..... +++.. +.|.+.|++.=-.-..
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~------~~~~~~~~i~~~l~~~g~~~~d 415 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTH------PRHDPRAQLLASLRAQGFPVLD 415 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeC------ChhhhHHHHHHHHHHCCCCeEE
Confidence 34578888999999999999999988 887665554333323333333321 12343 6666666551100000
Q ss_pred CchhhhhccccccCCCCCcccCCccccEEEEecC-CCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE
Q 028501 92 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKED-GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK 170 (208)
Q Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~ 170 (208)
.....+++ .+. +++ +.-+ .. ......+.+.-+.|||-|..+++.|... .||...+=--.+....
T Consensus 416 lsdne~~k-----~h~----r~~-~g~~----~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a 480 (521)
T PRK12483 416 LTDDELAK-----LHI----RHM-VGGR----APLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADG 480 (521)
T ss_pred CCCCHHHH-----HHH----Hhc-cCCC----CCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCce
Confidence 00001110 000 011 0000 11 1224688899999999999999999853 3444444333344444
Q ss_pred EE
Q 028501 171 DK 172 (208)
Q Consensus 171 ~~ 172 (208)
.+
T Consensus 481 ~v 482 (521)
T PRK12483 481 RV 482 (521)
T ss_pred EE
Confidence 44
No 213
>PRK07431 aspartate kinase; Provisional
Probab=90.03 E-value=17 Score=34.12 Aligned_cols=107 Identities=19% Similarity=0.283 Sum_probs=66.0
Q ss_pred EEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCc
Q 028501 16 IVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES 93 (208)
Q Consensus 16 ~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~ 93 (208)
.+++. ..+.+|++++|...|.++|++|.....+.... ..--.|.+... .+.+..+.|.+ +..
T Consensus 272 ~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~----------d~~~~~~~l~~-l~~----- 335 (587)
T PRK07431 272 KVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAEN----------ELKKAEAVAEA-IAP----- 335 (587)
T ss_pred EEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHH----------HHHHHHHHHHH-HHH-----
Confidence 44444 47889999999999999999999554332222 12223666432 12223333333 211
Q ss_pred hhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501 94 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
.+ . . .+|.+.+ +...|.+.|. +++|+++++..+|++.|++|....
T Consensus 336 --~~------~-~-----------~~i~~~~---~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~ 383 (587)
T PRK07431 336 --AL------G-G-----------AEVLVET---NVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS 383 (587)
T ss_pred --Hc------C-C-----------CcEEEeC---CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence 00 0 0 1122222 3367888776 789999999999999999997666
No 214
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.56 E-value=3.3 Score=30.43 Aligned_cols=48 Identities=6% Similarity=0.167 Sum_probs=35.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--e-eEEEEEEeeC
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--V-KQTKFFITRL 63 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~-~~d~F~v~~~ 63 (208)
.+.+.+..+|+||-|+++...|+.+|+|+. +|.+.+- . .--.|+|.-.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt--~IESRP~~~~~~eY~FfIdie 91 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIH--HLESRPSRKEGGDLEVLVRCE 91 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEE--EEECCcCCCCCceEEEEEEEE
Confidence 355666669999999999999999999999 6655543 2 2223677544
No 215
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=89.56 E-value=0.71 Score=35.85 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=27.0
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEE
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGT 46 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~ 46 (208)
+..++.....+.||+++.+++.++++||+|.++-
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~ 127 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQII 127 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEe
Confidence 3344444457899999999999999999999543
No 216
>PRK08198 threonine dehydratase; Provisional
Probab=89.32 E-value=1.9 Score=38.34 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=33.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 164 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t 164 (208)
...+.|.-+|+||-|..+...+++.|.||..+....
T Consensus 327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 579999999999999999999999999999998764
No 217
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.92 E-value=5.3 Score=26.81 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=31.6
Q ss_pred EEEEEE---eCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501 15 TIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL 63 (208)
Q Consensus 15 ~~v~v~---~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~ 63 (208)
+.|+|. .+++||+++++..+|+++|++|. -|.+....+ +|.+...
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VD--mI~~s~~~i--Sftv~~~ 49 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVD--LITTSEISV--ALTLDNT 49 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEE--EEeecCCEE--EEEEecc
Confidence 355662 47889999999999999999999 444433222 3666543
No 218
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.65 E-value=4.7 Score=27.03 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=36.3
Q ss_pred CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 22 GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 22 ~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
++.||+++++.++|+++|+++. -|.+..+.+ .|.+... ..++.+ +.+..+.+.|++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vD--mI~~s~~~i--sftv~~~--~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVD--LVSTSETNV--TVSLDPD--PNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEE--EEEeCCCEE--EEEEeCc--ccccch-HHHHHHHHHHHh
Confidence 6789999999999999999999 444433222 3666543 212322 355666666655
No 219
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=88.64 E-value=3.4 Score=26.05 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=27.7
Q ss_pred CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501 22 GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL 63 (208)
Q Consensus 22 ~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~ 63 (208)
.+++|+.+++.++|.++|+++.- +.+..+.+ +|++...
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~--i~t~~~~i--s~~v~~~ 48 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDL--IPTSENSV--TLYLDDS 48 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEE--EecCCCEE--EEEEehh
Confidence 47899999999999999999994 44433332 3666543
No 220
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=88.50 E-value=3 Score=31.51 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=44.5
Q ss_pred EecCC-CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe-cCCeEEEEEEEEe
Q 028501 122 VKEDG-PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY 177 (208)
Q Consensus 122 ~~~~~-~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t-~~~~~~~~f~v~~ 177 (208)
|+... ...+.+.+.-.||.|.|+++-.++++.++||..++-+- ..+++.-...+.-
T Consensus 64 f~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 64 FYDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred hhhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 44433 34788999999999999999999999999999888653 5677766666653
No 221
>PRK08818 prephenate dehydrogenase; Provisional
Probab=88.42 E-value=1.6 Score=38.71 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=37.8
Q ss_pred eEEEEEEeC-CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501 14 ATIVQLSFG-DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL 63 (208)
Q Consensus 14 ~~~v~v~~~-DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~ 63 (208)
.+.+.+.-+ |+||-|++++..|..+|+||..-.+.....+-.- |+|.-.
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~ 344 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFE 344 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEe
Confidence 456677776 9999999999999999999998887444444443 777654
No 222
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=88.30 E-value=15 Score=36.17 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=61.0
Q ss_pred CCeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501 12 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 88 (208)
Q Consensus 12 ~~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~ 88 (208)
++.+.|+|.+ .+.+|.++++.+.|.++|++|.- |.+....+ +|.+...+ ... ....++. +...+..
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~--I~sse~si--s~~i~~~~--~~~-~~~~~~~----l~~~l~~ 388 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDL--ISSSETNV--TVSLDPSE--NLV-NTDVLAA----LSADLSQ 388 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEE--EEcCCCEE--EEEEcccc--ccc-hHHHHHH----HHHHHhh
Confidence 3556778854 46899999999999999999983 34433222 25554321 100 0111222 2221211
Q ss_pred CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccE
Q 028501 89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDV 157 (208)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I 157 (208)
. .+|.+.. +...|.+.|. .+||+++.+..+|++.|+++
T Consensus 389 --~--------------------------~~i~~~~---~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 389 --I--------------------------CRVKIIV---PCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred --c--------------------------CcEEEeC---CeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 0 0022222 2367778775 78999999999999977644
No 223
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=87.86 E-value=4.4 Score=34.47 Aligned_cols=63 Identities=17% Similarity=0.327 Sum_probs=44.8
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--e-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--V-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
..|.+.+..+|+||-|+++.+.|+..|+|.. +|.+.+- . ..-.|+|.-. |.. .+ ..++++|++
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlT--kIESRP~k~~~~~Y~F~iD~e--g~~-~~----~~v~~AL~e 258 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLT--KIESRPLKTGLGEYLFFIDIE--GHI-DD----PLVKEALEE 258 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCccee--eEeecccCCCCeeEEEEEEEe--cCc-Cc----HhHHHHHHH
Confidence 3677778888999999999999999999998 6655443 2 2345777654 663 22 345566655
No 224
>PRK06349 homoserine dehydrogenase; Provisional
Probab=87.72 E-value=4 Score=36.72 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=39.6
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL 63 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~ 63 (208)
...-|.+...|+||.|++|++.|.++|++|.+.......+.....+++++.
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 346788889999999999999999999999976655443344555667654
No 225
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=87.59 E-value=5.8 Score=27.21 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=39.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec--CCeEEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~--~~~~~~~f~v~ 176 (208)
.+.+.+...++|+.|..+-++....|..+..+..++. ++.+.-.|.|.
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~ 52 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD 52 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc
Confidence 5789999999999999999999999999999988775 34444445553
No 226
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=87.21 E-value=5.5 Score=25.09 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=31.7
Q ss_pred EEEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 131 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 131 ~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
.|.+.| .+.||++++|.++|++.|+++......+ .+ ..-.|.+.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s~-~~is~~v~ 49 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-SE-RNISAVID 49 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-cc-cEEEEEEe
Confidence 455655 4789999999999999999998775543 22 33346664
No 227
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.08 E-value=3.4 Score=28.13 Aligned_cols=37 Identities=11% Similarity=0.240 Sum_probs=28.7
Q ss_pred cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 137 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 137 ~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
.+.||++++|..+|+++|++|..+.. ++ ..-.|.+..
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~q---s~-~sISftV~~ 48 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVAT---SE-VSISLTLDP 48 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe---cC-CEEEEEEEh
Confidence 57899999999999999999998853 22 333566654
No 228
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=86.77 E-value=7.1 Score=25.89 Aligned_cols=31 Identities=26% Similarity=0.456 Sum_probs=25.0
Q ss_pred EEEEEe---cCcchHHHHHHHHHHhCCccEEEEE
Q 028501 131 LLYIET---ADRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 131 ~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
.+++.| .+.+|++++|..+|++.|+++....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 455533 5779999999999999999997764
No 229
>PLN02550 threonine dehydratase
Probab=86.72 E-value=28 Score=32.84 Aligned_cols=130 Identities=8% Similarity=0.082 Sum_probs=71.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCc-
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES- 93 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~- 93 (208)
..+.|.-+||||-|.+++..|... ||.+..-....-....+++.... .+++..+.|.+.|++.=-.. .++
T Consensus 418 ~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~l~~~g~~~-~~l~ 488 (591)
T PLN02550 418 AVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV------HTEQELQALKKRMESAQLRT-VNLT 488 (591)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe------CCHHHHHHHHHHHHHCCCCe-EeCC
Confidence 568888999999999999999986 77765554422222222333222 12466677777776511110 000
Q ss_pred hhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe
Q 028501 94 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV 168 (208)
Q Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~ 168 (208)
...++ +-+. +++.... .+......+.+.-+.|||-|..+...|... -||...+-...++.
T Consensus 489 ~~~~~----~~~L-----R~v~g~r-----a~~~~E~l~~v~fPErpGAl~~Fl~~lg~~-~nITeF~YR~~~~~ 548 (591)
T PLN02550 489 SNDLV----KDHL-----RYLMGGR-----AIVKDELLYRFVFPERPGALMKFLDAFSPR-WNISLFHYRGQGET 548 (591)
T ss_pred CChHH----hhhh-----hheeccc-----cccCceEEEEEEecCcCCHHHHHHHhhCCC-CceeeEEeecCCCC
Confidence 01111 0000 0111010 011224788999999999999999988753 34444444333433
No 230
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=86.64 E-value=7.2 Score=25.85 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=30.5
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEee
Q 028501 15 TIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 62 (208)
Q Consensus 15 ~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~ 62 (208)
+.|++.+ .+.+|+++++..+|.+.|+++.. +.+.+..+ +|.+..
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~--i~~s~~~i--s~~v~~ 48 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDL--ISTSEVSV--SLTLDP 48 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEE--EEcCCcEE--EEEEEc
Confidence 3566643 67899999999999999999973 33433333 366653
No 231
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=86.40 E-value=33 Score=33.69 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=65.3
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501 12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 88 (208)
Q Consensus 12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~ 88 (208)
++...|+|.+. +.+|.++++.++|.++|++|.-.. +..+...-.|.+.. +..+.+...|++ +..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~--~~~s~~sis~~i~~----------~~~~~~~~~l~~-~~~ 381 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVG--VHPDRQLLQLAYTS----------EVADSALKLLDD-AAL 381 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEE--ecCCCcEEEEEEeH----------HHHHHHHHHHHh-hcC
Confidence 35567788765 778999999999999999998443 22332222243331 122333333333 110
Q ss_pred CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501 89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
+.+|.+.. +...|.+.|. .++|+..++..+|++.++++....
T Consensus 382 ----------------------------~~~i~v~~---~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~ 426 (810)
T PRK09466 382 ----------------------------PGELKLRE---GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQS 426 (810)
T ss_pred ----------------------------CCcEEEeC---CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEe
Confidence 01123222 3367788775 689999999999999999885543
No 232
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.32 E-value=2.8 Score=25.63 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=30.1
Q ss_pred ecCcchHHHHHHHHHHhCCccEEEEEEEecCC-eEEEEEEEE
Q 028501 136 TADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVS 176 (208)
Q Consensus 136 ~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~-~~~~~f~v~ 176 (208)
..|.||.++++...|+++|++|..+.....++ ...-.|.+.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 46889999999999999999998876643222 233346664
No 233
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.03 E-value=3.2 Score=38.46 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=33.4
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 52 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~ 52 (208)
....+.+...|+||.++.++..|.+.++||...++.....
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~ 490 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREA 490 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCC
Confidence 3445566779999999999999999999999998887543
No 234
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=85.73 E-value=2.8 Score=26.97 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=29.1
Q ss_pred ecCcchHHHHHHHHHHhCCccEEEEEEEecCC-eEEEEEEEE
Q 028501 136 TADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVS 176 (208)
Q Consensus 136 ~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~-~~~~~f~v~ 176 (208)
..|+||.++++.+.|++.|++|..+......+ ...-.|.+.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~ 50 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVP 50 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEec
Confidence 36889999999999999999998775433222 222345553
No 235
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=85.39 E-value=2.2 Score=25.83 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=30.2
Q ss_pred EEEEecC---cchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 132 LYIETAD---RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 132 i~v~~~D---r~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
+++.|.+ .+|+++++.++|++++++|........ ...-.|.+.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~~--~~~~s~~v~ 48 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSES--EVNISFTVD 48 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCCC--cEEEEEEEe
Confidence 4444444 899999999999999999987765432 222346664
No 236
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=85.20 E-value=1.2 Score=41.10 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=32.7
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
.++|.|.||.|+..+|...|..+++|+..+.+...
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 48999999999999999999999999999999764
No 237
>PRK08526 threonine dehydratase; Provisional
Probab=84.69 E-value=6.9 Score=34.99 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=34.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
...+.+.-+||||-|.+++..+...+.||.++.-....
T Consensus 326 ~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~ 363 (403)
T PRK08526 326 KMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFS 363 (403)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEecc
Confidence 68899999999999999999999999999998876543
No 238
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.84 E-value=7 Score=24.73 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=31.6
Q ss_pred EEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 131 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 131 ~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
.|.+.|. ++||+++++..+|++.|+++..+...+. + ..-.|.+.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s-~-~~isf~v~ 49 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGAS-E-INISCVID 49 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCc-c-ceEEEEEe
Confidence 4555554 7899999999999999999987765442 2 22346664
No 239
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=83.66 E-value=11 Score=33.65 Aligned_cols=50 Identities=16% Similarity=0.337 Sum_probs=37.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--Ce-eEEEEEEeeCCCCC
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SV-KQTKFFITRLDTGR 67 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~-~~d~F~v~~~~~g~ 67 (208)
.+.+.+..+|+||.|+++.+.|+..|+|.. +|.+.+ +. +--.|+|.-. |.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLt--kIeSRP~~~~~~~Y~Ffid~e--g~ 349 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMT--KLESRPIHGNPWEEMFYLDVQ--AN 349 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCee--EEEeeecCCCCceEEEEEEEe--CC
Confidence 455666668999999999999999999999 555543 32 3345888654 65
No 240
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=83.34 E-value=8.9 Score=25.55 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=34.5
Q ss_pred CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 028501 138 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY 196 (208)
Q Consensus 138 Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~ 196 (208)
-.||++++|.++|+++|+|+..+.. ++ ..-.|.+..+ .+.++..++|.+.|..
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~~--~~~~~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHME--NAEDTNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEehh--hcChHHHHHHHHHHHH
Confidence 4599999999999999999998854 22 3334555432 2223334566565554
No 241
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=83.17 E-value=3.7 Score=26.34 Aligned_cols=28 Identities=14% Similarity=0.359 Sum_probs=24.3
Q ss_pred EEEEEec---CcchHHHHHHHHHHhCCccEE
Q 028501 131 LLYIETA---DRPGLLVEIMKIIADVNVDVE 158 (208)
Q Consensus 131 ~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~ 158 (208)
.+.+.|. +.||+++++..+|++.|+++.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4666665 789999999999999999995
No 242
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=83.06 E-value=8.6 Score=24.12 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=27.9
Q ss_pred cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 137 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 137 ~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
.+++|+.++|.++|+++|+++..... ++ ..-.|.+..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~t---~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIPT---SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEec---CC-CEEEEEEeh
Confidence 47799999999999999999988843 22 334566653
No 243
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=82.93 E-value=1.8 Score=36.24 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=33.1
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 164 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t 164 (208)
...++.+...|.||+|..|+-+|+..|.||.+.-+--
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~ 112 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL 112 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence 3578999999999999999999999999999987653
No 244
>PRK08526 threonine dehydratase; Provisional
Probab=82.83 E-value=15 Score=32.84 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=44.9
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe----eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV----KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~----~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
....+.+.-+|+||-|.+++..+...+.||.+..-...... -..+++.... .+++..+.|.+.|++
T Consensus 325 r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~------~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 325 RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET------KGKEHQEEIRKILTE 394 (403)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 44678899999999999999999999999997766443321 1222222222 124666777777654
No 245
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=82.59 E-value=7.3 Score=24.89 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.5
Q ss_pred eCCcccHHHHHHHHHHHCCceEEEEEE
Q 028501 21 FGDRLGALIDTMNALKDLGLDVAKGTV 47 (208)
Q Consensus 21 ~~DrpGLl~~i~~~L~~~gl~I~~a~i 47 (208)
.+|.||.++++++.|.+.|++|.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 478999999999999999999984443
No 246
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.46 E-value=8.6 Score=23.30 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.8
Q ss_pred eCCcccHHHHHHHHHHHCCceEEEEEE
Q 028501 21 FGDRLGALIDTMNALKDLGLDVAKGTV 47 (208)
Q Consensus 21 ~~DrpGLl~~i~~~L~~~gl~I~~a~i 47 (208)
.+|.+|.++++.+.|.++|++|.....
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 488999999999999999999986544
No 247
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=81.08 E-value=13 Score=24.48 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=39.7
Q ss_pred EEEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCCC
Q 028501 131 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRP 201 (208)
Q Consensus 131 ~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~~ 201 (208)
.|++.| .+.+|+++++.++|++.|+++......+.+ ..-.|.+..+ .. +...+.|.+++...+.+.
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~~~-d~--~~~~~~l~~~~~~~~~~~ 71 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE--HSISFVVDES-DA--DKALEALEEEFALEIKAG 71 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEeHH-HH--HHHHHHHHHHHHhhhhhC
Confidence 455533 378999999999999999999877654332 2223555431 11 122355666655555443
No 248
>PRK00907 hypothetical protein; Provisional
Probab=80.08 E-value=13 Score=26.24 Aligned_cols=65 Identities=6% Similarity=0.059 Sum_probs=45.2
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEE----EecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTV----NTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i----~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
..+-+.|.|.+++++...|..++..+.-.....++ ++.|.+..-++.|... +.+.++.|.+.|.+
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at-------s~eQld~iY~~L~~ 84 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE-------SREQYDAAHQALRD 84 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC-------CHHHHHHHHHHHhh
Confidence 44789999999999999999999998776655555 4444454444555543 23566777666644
No 249
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=79.93 E-value=5.3 Score=37.01 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=32.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 52 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~ 52 (208)
...+.+.-.|+||.+..++..|.++++||...++.....
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~ 489 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEK 489 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCC
Confidence 345556679999999999999999999999888887653
No 250
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.52 E-value=12 Score=25.41 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=28.7
Q ss_pred eCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501 21 FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL 63 (208)
Q Consensus 21 ~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~ 63 (208)
.++.||..+++..+|+++|++|. -|.+..+.+ .|.+...
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVD--mI~qs~~sI--SftV~~s 49 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVD--VVATSEVSI--SLTLDPS 49 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEE--EEEecCCEE--EEEEEhh
Confidence 36889999999999999999999 444433222 3666544
No 251
>PRK08841 aspartate kinase; Validated
Probab=79.27 E-value=38 Score=30.18 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=29.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
...+.+.|...||+.+.+.++|++.|+||....
T Consensus 318 ~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 318 VSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 468999999999999999999999999995554
No 252
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.07 E-value=13 Score=23.24 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=31.7
Q ss_pred EEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 131 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 131 ~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
.+.+.|. +.+|+++++.+.|++.|+++.-......+ ..-.|.+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~ 49 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVA 49 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEe
Confidence 4555554 77999999999999999999877654422 22346664
No 253
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=78.85 E-value=6 Score=25.30 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=24.8
Q ss_pred EEEEEeC---CcccHHHHHHHHHHHCCceEE
Q 028501 16 IVQLSFG---DRLGALIDTMNALKDLGLDVA 43 (208)
Q Consensus 16 ~v~v~~~---DrpGLl~~i~~~L~~~gl~I~ 43 (208)
.|.+.+. +.||+++++..+|.+.|+++.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5677764 789999999999999999996
No 254
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=78.20 E-value=19 Score=37.80 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=58.7
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-----eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHh
Q 028501 11 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-----VKQTKFFITRLDTGRKVEDPDLLERIRLTIINN 85 (208)
Q Consensus 11 ~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-----~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~ 85 (208)
.++.+.+.++...++..|+++.-+|..+|+.|.+.+-+.... .++..|.+.... +..+...+..+.+++++...
T Consensus 486 ~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~-~~~~~~~~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 486 GPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPD-GDALDLDDIRERFEEAFEAV 564 (1528)
T ss_pred CCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCC-CccccHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999988766442 357779998875 55444445556777777765
Q ss_pred hcc
Q 028501 86 LLK 88 (208)
Q Consensus 86 l~~ 88 (208)
..+
T Consensus 565 ~~g 567 (1528)
T PF05088_consen 565 WNG 567 (1528)
T ss_pred hcC
Confidence 543
No 255
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=78.11 E-value=28 Score=31.12 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=42.6
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe-cCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t-~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
....+.+.-+||||-|.+++..+...+.||...+-.. .+-....+++.... .+++..+.|.+.|++
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~------~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIEL------NDKEDFAGLLERMAA 390 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 3467889999999999999998888888999655542 22222222222222 123566777777665
No 256
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=77.89 E-value=58 Score=30.05 Aligned_cols=126 Identities=12% Similarity=0.177 Sum_probs=71.3
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCC
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE 92 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~ 92 (208)
.-..+.|.-|||||-|..++++|.. .||...+-...+.....+|+.... .+++.++.|.+.|++ ..-.-.+
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~------~~~~~~~~l~~~L~~-~Gy~~~d 394 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQL------SNPQERQEILARLND-GGYSVVD 394 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEe------CCHHHHHHHHHHHHH-cCCCeEE
Confidence 3457888899999999999999997 577766655444333344444332 124667777777765 2110000
Q ss_pred c-hhhhh---ccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501 93 S-SEQLA---MGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 164 (208)
Q Consensus 93 ~-~~~l~---~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t 164 (208)
. ...++ .|-+.+=+. +...+.-...+.-+.|||-|.+...+|.. +-||...+-..
T Consensus 395 ls~ne~~k~h~r~~~g~~~----------------~~~~~e~~~~~~fperpgaL~~Fl~~l~~-~~~It~f~Yr~ 453 (499)
T TIGR01124 395 LTDDELAKLHVRYMVGGRP----------------PHVENERLYSFEFPERPGALLRFLNTLQG-YWNISLFHYRN 453 (499)
T ss_pred CCCCHHHHHHHHhccCCCC----------------CCCCCceEEEEeCCCCccHHHHHHHhcCC-CCceeeEEEec
Confidence 0 01111 010111010 01122367889999999998887664433 34666666533
No 257
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=77.59 E-value=22 Score=26.94 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=34.2
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV 53 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~ 53 (208)
..-..+.+.-.||-|.|+++..++++.++||...+..---++
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g 111 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQG 111 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCc
Confidence 445678889999999999999999999999996665543333
No 258
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=76.45 E-value=20 Score=23.86 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=33.7
Q ss_pred CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 23 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 23 DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
-.||+++++.+.|+++|+++. -|.+..+.+ .|.+... . +.+ +.++.|...|++
T Consensus 13 ~~~g~~~~If~~la~~~I~vd--~I~~s~~~i--sftv~~~---~-~~~-~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVD--LISTSEVHV--SMALHME---N-AED-TNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEE--EEEeCCCEE--EEEEehh---h-cCh-HHHHHHHHHHHH
Confidence 469999999999999999999 444433222 3555432 1 221 255566666655
No 259
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=76.36 E-value=16 Score=22.84 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=25.8
Q ss_pred EEEEEe---CCcccHHHHHHHHHHHCCceEEEEE
Q 028501 16 IVQLSF---GDRLGALIDTMNALKDLGLDVAKGT 46 (208)
Q Consensus 16 ~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~ 46 (208)
.|++.| ++.||+++++.+.|.+.|+++.-..
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~ 36 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIA 36 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 466666 5789999999999999999997443
No 260
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=73.89 E-value=17 Score=22.08 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=30.2
Q ss_pred EEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 132 LYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 132 i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
|++.|. +++|+++++...|++.++++.....+. . ...-.|.+.
T Consensus 3 i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~-~-~~~i~~~v~ 48 (65)
T cd04892 3 VSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS-S-EVNISFVVD 48 (65)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC-C-ceeEEEEEe
Confidence 555444 789999999999999999997775532 1 122346664
No 261
>PRK08639 threonine dehydratase; Validated
Probab=73.31 E-value=37 Score=30.41 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=41.6
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe-cCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t-~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
....+.+.-+||||-|.+++..+...+.||...+-.. .+...-.+++.... .+++..+++.+.|.+
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~------~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIEL------KDAEDYDGLIERMEA 401 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 3467889999999999999997777777999765442 21112122222222 123566677776655
No 262
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=73.17 E-value=17 Score=21.60 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=24.9
Q ss_pred EEEEEeCC---cccHHHHHHHHHHHCCceEEEEE
Q 028501 16 IVQLSFGD---RLGALIDTMNALKDLGLDVAKGT 46 (208)
Q Consensus 16 ~v~v~~~D---rpGLl~~i~~~L~~~gl~I~~a~ 46 (208)
.|+|.+.+ .+|.++++.++|.+++++|....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~ 35 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMIS 35 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEE
Confidence 35566544 89999999999999999998443
No 263
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.70 E-value=14 Score=25.07 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=40.9
Q ss_pred cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCCCC
Q 028501 137 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPE 202 (208)
Q Consensus 137 ~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~~~ 202 (208)
....|++..+.++|.++|+++..+-.. .|.|.+.=+...+.++..+.|.+.|...+..-.
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~PSG------ID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~ 71 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMPSG------IDDISIIIRDNQLTDEKEQKILAEIKEELHPDE 71 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeecCC------CccEEEEEEccccchhhHHHHHHHHHHhcCCCE
Confidence 345899999999999999999887543 222444434444555455777777777776543
No 264
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=71.44 E-value=27 Score=31.90 Aligned_cols=49 Identities=10% Similarity=0.238 Sum_probs=36.4
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC--ee-E-EEEEEeeC
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VK-Q-TKFFITRL 63 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~~-~-d~F~v~~~ 63 (208)
+.+.|.+..+|+||-|+++..+|..+|+|+. +|.+... .. - -.|+|.-.
T Consensus 30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLT--hIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINIL--HLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred ceEEEEEECCCCchHHHHHHHHHHHCCCCEE--EEECCcCCCCCCccEEEEEEEE
Confidence 4566666679999999999999999999999 6655443 22 2 24777654
No 265
>PRK06635 aspartate kinase; Reviewed
Probab=71.39 E-value=36 Score=30.13 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=29.3
Q ss_pred CCeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEE
Q 028501 12 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKG 45 (208)
Q Consensus 12 ~~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a 45 (208)
++...++|.+ ++.||.++++.++|++.|+||...
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 4566788876 689999999999999999999854
No 266
>PLN02317 arogenate dehydratase
Probab=70.99 E-value=47 Score=29.64 Aligned_cols=35 Identities=11% Similarity=0.297 Sum_probs=28.9
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 50 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~ 50 (208)
.|.|.+.-+|+||-|+++..+|+..|+|+. +|.+.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLt--kIESR 317 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLT--KIESR 317 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEE--EEEee
Confidence 356666668999999999999999999999 55443
No 267
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.37 E-value=23 Score=22.63 Aligned_cols=34 Identities=9% Similarity=0.144 Sum_probs=26.3
Q ss_pred EEEEEec--CcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501 131 LLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDT 164 (208)
Q Consensus 131 ~i~v~~~--Dr~GlL~~i~~~l~~~~i~I~~a~i~t 164 (208)
.+.+.|. ..+|++.++..+|++.|++|......+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3455554 468999999999999999987776543
No 268
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.22 E-value=23 Score=22.00 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=25.8
Q ss_pred EEEEEe---CCcccHHHHHHHHHHHCCceEEEEEE
Q 028501 16 IVQLSF---GDRLGALIDTMNALKDLGLDVAKGTV 47 (208)
Q Consensus 16 ~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i 47 (208)
.|.+.+ ++.+|+++++.+.|++.|+++.-...
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 466666 47899999999999999999974443
No 269
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=69.00 E-value=44 Score=29.89 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=30.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 163 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~ 163 (208)
...+.+.-+||||-|.++++.+...+-||...+-.
T Consensus 325 ~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 325 KHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 68899999999999999999666676699987766
No 270
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.97 E-value=24 Score=21.62 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=24.9
Q ss_pred EEEEe---cCcchHHHHHHHHHHhCCccEEEEE
Q 028501 132 LYIET---ADRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 132 i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
+++.| .+.+|++.++...|++.|+++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 45544 3679999999999999999997776
No 271
>PRK11898 prephenate dehydratase; Provisional
Probab=68.93 E-value=55 Score=27.81 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=34.7
Q ss_pred eEEEEEEeCC-cccHHHHHHHHHHHCCceEEEEEEEecCC--e-eEEEEEEeeCCCCC
Q 028501 14 ATIVQLSFGD-RLGALIDTMNALKDLGLDVAKGTVNTEGS--V-KQTKFFITRLDTGR 67 (208)
Q Consensus 14 ~~~v~v~~~D-rpGLl~~i~~~L~~~gl~I~~a~i~t~~~--~-~~d~F~v~~~~~g~ 67 (208)
.+.|.+..++ +||-|+++...|+.+|+|+. +|.+.+. . .--.|+|.-. |.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt--~IeSRP~~~~~~~y~F~vd~e--g~ 249 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLT--RIESRPTKTGLGTYFFFIDVE--GH 249 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCee--eEecccCCCCCccEEEEEEEE--cc
Confidence 3555555555 69999999999999999999 6655542 1 2234777644 55
No 272
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=68.61 E-value=45 Score=35.13 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=33.2
Q ss_pred CCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEE
Q 028501 125 DGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 125 ~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
..+.+++|+|.+.|.|=|+-.|+..|..+|+.|+.+-
T Consensus 13 w~~~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~ 49 (1528)
T PF05088_consen 13 WESDHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLII 49 (1528)
T ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEe
Confidence 3456899999999999999999999999999997654
No 273
>PRK08639 threonine dehydratase; Validated
Probab=68.09 E-value=43 Score=30.00 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=29.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID 163 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~ 163 (208)
...+.+.-+||||-|.++++.+...+-||..++-.
T Consensus 336 ~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 336 KHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 68899999999999999999666655599988755
No 274
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=68.06 E-value=36 Score=23.37 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=46.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
...+.+.+.++|+.|.++.++....|+.+....+++.- +.+---|.|. ++ .+ .+.|...|++..
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~-s~--R~------~~lL~~QLeKl~ 68 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD-SD--RS------VDLLTSQLEKLY 68 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc-CC--CC------hHHHHHHHHHHc
Confidence 45789999999999999999999999999988888763 3333235553 32 22 255666777633
No 275
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=68.05 E-value=11 Score=24.50 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=25.3
Q ss_pred EEEEEe-CCcccHHHHHHHHHHHCCceEEEE
Q 028501 16 IVQLSF-GDRLGALIDTMNALKDLGLDVAKG 45 (208)
Q Consensus 16 ~v~v~~-~DrpGLl~~i~~~L~~~gl~I~~a 45 (208)
.|+|.+ ++.||.++++.+.|++.|++|---
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 466664 567999999999999999999865
No 276
>PRK12483 threonine dehydratase; Reviewed
Probab=67.98 E-value=35 Score=31.75 Aligned_cols=39 Identities=5% Similarity=0.187 Sum_probs=32.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA 169 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~ 169 (208)
...+.|.-+||||-|.++++.|... ||..+.-...+.+.
T Consensus 345 ~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~ 383 (521)
T PRK12483 345 EAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE 383 (521)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe
Confidence 6789999999999999999999988 88877766544333
No 277
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=67.85 E-value=54 Score=29.77 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=36.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe---eEEEEEEeeC
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV---KQTKFFITRL 63 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~---~~d~F~v~~~ 63 (208)
.+.|.+..+|+||-|+++..+|+.+|+|+. +|.+.+.. .--.|+|.-.
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLt--hIESRPsk~~~~eY~FFVD~e 66 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLT--HIESRPSKTHPGEYEFFVEFD 66 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCee--EEecccCCCCCccEEEEEEEe
Confidence 466777779999999999999999999999 66665431 2224777654
No 278
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=67.83 E-value=5.8 Score=35.34 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=32.8
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
.++|.|.||-||..++-..|...+||+..+.+...|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 478999999999999999999999999999996544
No 279
>PRK14646 hypothetical protein; Provisional
Probab=66.79 E-value=57 Score=25.15 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 028501 141 GLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 201 (208)
Q Consensus 141 GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~~ 201 (208)
-+...+..++.++|+.+..+.....++...-..+|+. +|..++=..++.+-+++...|+..
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~~ 69 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIENS 69 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCcC
Confidence 4566778889999999999999988777666677765 455677677888888888888743
No 280
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=66.48 E-value=12 Score=24.39 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=29.9
Q ss_pred EEEEEec-CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 131 LLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 131 ~i~v~~~-Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
.++|.+. +.||.+++|...|+++|++|--+... .+ .-.|.+.
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~--~~--~isFtv~ 45 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS--PE--EVIFTVD 45 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec--CC--CEEEEEc
Confidence 4555544 55999999999999999999998333 22 2346664
No 281
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.32 E-value=29 Score=21.60 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=31.6
Q ss_pred EEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 131 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 131 ~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
.+.+.|. ++||+++.+...|++.|+++..+.....+ ..-.|.+.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~ 49 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVH 49 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEe
Confidence 4556564 78999999999999999999887654322 22236664
No 282
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=65.18 E-value=29 Score=21.21 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=29.5
Q ss_pred EEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 132 LYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 132 i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
+++.| .+.+|+++++...|++.|+++.....+ + ..-.|.+.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~--~~is~~v~ 46 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTS--E--IKISCLID 46 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcc--C--ceEEEEEe
Confidence 45544 467999999999999999999777632 1 22346664
No 283
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=65.16 E-value=28 Score=21.06 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=25.3
Q ss_pred EEEEEeC---CcccHHHHHHHHHHHCCceEEEEE
Q 028501 16 IVQLSFG---DRLGALIDTMNALKDLGLDVAKGT 46 (208)
Q Consensus 16 ~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~ 46 (208)
.|++.+. +++|+++++...|.+.++++....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~ 35 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMIS 35 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 4666554 789999999999999999998443
No 284
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=64.20 E-value=38 Score=22.17 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=26.5
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEE
Q 028501 15 TIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVN 48 (208)
Q Consensus 15 ~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~ 48 (208)
+.|++.+ .+.+|+++++.++|++.++++.-....
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 3566644 478999999999999999999854443
No 285
>PRK00907 hypothetical protein; Provisional
Probab=64.16 E-value=34 Score=24.05 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=38.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEE----EecCCeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEI----DTEGLVAKDKFHVSYGGAALNSSLSQVLVNCL 194 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i----~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l 194 (208)
+.+.|.|.+++++...|..++..+.-......+ +..|.-..-.+.|...+ .+.+++|=++|
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats----~eQld~iY~~L 82 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAES----REQYDAAHQAL 82 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECC----HHHHHHHHHHH
Confidence 889999999999999999999988665443333 33333344444444332 22445554444
No 286
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.88 E-value=31 Score=21.07 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=24.8
Q ss_pred EEEEEe---CCcccHHHHHHHHHHHCCceEEEEE
Q 028501 16 IVQLSF---GDRLGALIDTMNALKDLGLDVAKGT 46 (208)
Q Consensus 16 ~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~ 46 (208)
.|++.+ .+.+|++.++...|.+.|+++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355654 4679999999999999999997443
No 287
>PRK09224 threonine dehydratase; Reviewed
Probab=63.61 E-value=66 Score=29.67 Aligned_cols=43 Identities=14% Similarity=0.308 Sum_probs=33.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF 173 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f 173 (208)
...+.|.-+||||-|.++++.|. +.||..++-...+.....+|
T Consensus 328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~ 370 (504)
T PRK09224 328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIF 370 (504)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEE
Confidence 68899999999999999999999 68888877665443333343
No 288
>PRK02047 hypothetical protein; Provisional
Probab=63.28 E-value=49 Score=23.11 Aligned_cols=66 Identities=5% Similarity=0.006 Sum_probs=44.1
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEE----ecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN----TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~----t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
+..+.+.|.+++.+++...+..++..+...+..+.+. +.|.+..-++.++-. +++.+..|.+.|.+
T Consensus 14 Pc~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~-------s~eq~~~iY~~L~~ 83 (91)
T PRK02047 14 PSDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRAT-------SREQLDNIYRALTG 83 (91)
T ss_pred CCCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEEC-------CHHHHHHHHHHHhh
Confidence 3457899999999999999999999987776665553 334444333344332 24566666666544
No 289
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=63.07 E-value=14 Score=34.09 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=32.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 51 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~ 51 (208)
.+.|.|.||.|+..+|...|...++|+....|...+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 578999999999999999999999999999986543
No 290
>PRK14634 hypothetical protein; Provisional
Probab=63.06 E-value=68 Score=24.72 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 028501 140 PGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 201 (208)
Q Consensus 140 ~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~~ 201 (208)
..+-.-+..++.++|+.+..+.+...+....-..+|.. +|..++=..++.+-+++...|+..
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~ 69 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEAS 69 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhccc
Confidence 34556677788899999999999887766555677765 676677777888888888888753
No 291
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.89 E-value=35 Score=21.34 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=26.0
Q ss_pred EEEEEeC---CcccHHHHHHHHHHHCCceEEEEEE
Q 028501 16 IVQLSFG---DRLGALIDTMNALKDLGLDVAKGTV 47 (208)
Q Consensus 16 ~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i 47 (208)
.|.+.+. ++||.++++.++|.+.|+++.-...
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q 37 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQ 37 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 4666664 6899999999999999999975443
No 292
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=62.71 E-value=68 Score=32.27 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=47.3
Q ss_pred CEEEEeecC-CCCeEEEEE---EeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCC
Q 028501 2 PHVLIDQDS-NSDATIVQL---SFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLD 64 (208)
Q Consensus 2 p~V~~~~~~-~~~~~~v~v---~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~ 64 (208)
|.+.+.... ......+.+ ..+...|+|..++..+..+|+.+..+.+-+..++ .+-+|||+...
T Consensus 217 ~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~ 284 (1002)
T PTZ00324 217 PVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLT 284 (1002)
T ss_pred CeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCC
Confidence 666665444 223334444 4567789999999999999999999999998776 46689998764
No 293
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=62.20 E-value=34 Score=20.91 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=24.8
Q ss_pred EEEEEe---CCcccHHHHHHHHHHHCCceEEEEE
Q 028501 16 IVQLSF---GDRLGALIDTMNALKDLGLDVAKGT 46 (208)
Q Consensus 16 ~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~ 46 (208)
.|++.+ ++.+|+++++.+.|.+.|+++.-..
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 355554 5679999999999999999997443
No 294
>PRK14637 hypothetical protein; Provisional
Probab=62.05 E-value=70 Score=24.56 Aligned_cols=60 Identities=8% Similarity=0.052 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501 140 PGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 140 ~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
-|....+..++.++|+.+..++....+..-.-..+|+.+|. ++-..++++-+++..+|+.
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g-V~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG-VGLDDCARVHRILVPRLEA 67 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHhcc
Confidence 57778899999999999999999987776555566665332 5666788888888888764
No 295
>PRK14646 hypothetical protein; Provisional
Probab=61.72 E-value=72 Score=24.58 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501 26 GALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 87 (208)
Q Consensus 26 GLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~ 87 (208)
-+...+..++..+|+.+.+..+...++..+-.+++..++ |..++ =+..+.+...+.+.|+
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~-g~gVt-ldDC~~vSr~is~~LD 67 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTN-GDDIS-LDDCALFNTPASEEIE 67 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCC-CCCcc-HHHHHHHHHHHHHHhC
Confidence 456678889999999999999998776543345554442 43342 2455666667766664
No 296
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=59.96 E-value=50 Score=29.20 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=29.1
Q ss_pred CCCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEE
Q 028501 11 NSDATIVQLSFG---DRLGALIDTMNALKDLGLDVAK 44 (208)
Q Consensus 11 ~~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~ 44 (208)
.++...|.|.+. ++||.++++..+|.+.|+||..
T Consensus 334 ~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 334 EEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 346677888874 7999999999999999999984
No 297
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=58.89 E-value=67 Score=24.96 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=32.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
...+.|.-+|+||=|-.+-+=|+..|.||..+--+..
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~ 41 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRD 41 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecC
Confidence 4678899999999999999999999999988876654
No 298
>PRK14639 hypothetical protein; Provisional
Probab=57.50 E-value=82 Score=23.84 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=42.8
Q ss_pred HHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCCCC
Q 028501 146 IMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPE 202 (208)
Q Consensus 146 i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~~~ 202 (208)
+..++.++|+.+..+.....+++..-..++..+|. ++-..++.+-+++.++|+...
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g-v~iddC~~vSr~is~~LD~~d 58 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG-VNLDDCERLSELLSPIFDVEP 58 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHHhcccc
Confidence 45678899999999999987776666677765333 666778888889888888644
No 299
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=56.03 E-value=78 Score=23.69 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=38.6
Q ss_pred HHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501 146 IMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 146 i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
|...+..+|+.+..++....++...-..++..++. ++-..++.+-+++...|+.
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~g-v~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDKDGG-VSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS----HHHHHHHHHHHGGGTTT
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHcc
Confidence 46778899999999999998887666566655433 6767788898998888877
No 300
>PRK00341 hypothetical protein; Provisional
Probab=55.83 E-value=64 Score=22.55 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=42.6
Q ss_pred CC-eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe----cCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 12 SD-ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT----EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 12 ~~-~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t----~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
+. .+.+.|.|.+.+++...|..++..+. ......+.+ .|.+..-++.+.-. +++.+..|.+.|..
T Consensus 14 Pc~~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~-------s~~q~~~iy~~L~~ 83 (91)
T PRK00341 14 PCEDYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT-------DEDQLQDINSALRA 83 (91)
T ss_pred CCCCccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC-------CHHHHHHHHHHHhh
Confidence 44 48899999999999999999998876 665555532 33343333444433 23556666666544
No 301
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=55.35 E-value=89 Score=28.86 Aligned_cols=62 Identities=11% Similarity=0.223 Sum_probs=40.9
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHH
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLR 195 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~ 195 (208)
....+.|.-+||||-|.+++++|+. .||..++-...+.....+|..-. .+ .+..++|.++|.
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~----~~~~~~l~~~L~ 386 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSN----PQERQEILARLN 386 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCC----HHHHHHHHHHHH
Confidence 3688999999999999999999997 47777766544433333333222 22 234456666654
No 302
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=54.47 E-value=54 Score=21.03 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.0
Q ss_pred EEEEEEeCC--cccHHHHHHHHHHHCCceEE
Q 028501 15 TIVQLSFGD--RLGALIDTMNALKDLGLDVA 43 (208)
Q Consensus 15 ~~v~v~~~D--rpGLl~~i~~~L~~~gl~I~ 43 (208)
..|.+.+.. +||+.+++.++|.+.|+++.
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~ 33 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPI 33 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEE
Confidence 356666642 68999999999999999997
No 303
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=54.34 E-value=22 Score=22.97 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=25.5
Q ss_pred EEEEEec--CcchHHHHHHHHHHhCCccEEEEEEE
Q 028501 131 LLYIETA--DRPGLLVEIMKIIADVNVDVESAEID 163 (208)
Q Consensus 131 ~i~v~~~--Dr~GlL~~i~~~l~~~~i~I~~a~i~ 163 (208)
.+.+.|. .+||+++++.++|++.|+++......
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~ 38 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS 38 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec
Confidence 4555543 36899999999999999998766544
No 304
>PRK14636 hypothetical protein; Provisional
Probab=54.23 E-value=1.1e+02 Score=24.21 Aligned_cols=63 Identities=10% Similarity=-0.074 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 028501 139 RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 201 (208)
Q Consensus 139 r~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~~ 201 (208)
.+-+..-+..++..+|+.+..+.....+....-..+|.+ .|..++=..++.+-++|...|+..
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~ 67 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDEL 67 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccC
Confidence 345666778889999999999999877666555666665 345567677888888888888743
No 305
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=54.19 E-value=88 Score=23.23 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=31.6
Q ss_pred CCCeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501 11 NSDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEG 51 (208)
Q Consensus 11 ~~~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~ 51 (208)
++++..+++.+ -|-+|+|+.+.+.|++.|+-|. -++|..
T Consensus 60 ~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIF--avStyd 101 (128)
T COG3603 60 EKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIF--AVSTYD 101 (128)
T ss_pred cCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEE--EEEecc
Confidence 45777888775 5889999999999999999998 455543
No 306
>PRK14636 hypothetical protein; Provisional
Probab=52.07 E-value=1.2e+02 Score=24.00 Aligned_cols=62 Identities=15% Similarity=0.058 Sum_probs=40.5
Q ss_pred cccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501 24 RLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 87 (208)
Q Consensus 24 rpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~ 87 (208)
.+-+...+..++..+|+.+.+..+...+...+-.++|..++ |..++ =+..+.+-..|...|+
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~-~ggV~-lDDC~~vSr~Is~~LD 65 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPD-TRQLV-IEDCAALSRRLSDVFD 65 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCC-CCCcC-HHHHHHHHHHHHHHhc
Confidence 34466678888999999999999887765433344454432 33332 2556777777777664
No 307
>PRK14638 hypothetical protein; Provisional
Probab=51.83 E-value=1.1e+02 Score=23.49 Aligned_cols=60 Identities=8% Similarity=0.064 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCCC
Q 028501 142 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRP 201 (208)
Q Consensus 142 lL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~~ 201 (208)
+-.-+..++.++|+.+..+.....+....-..+|+..+..++-..++.+-++|...|+..
T Consensus 10 i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~~ 69 (150)
T PRK14638 10 VRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDRE 69 (150)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhccc
Confidence 334566788899999999999987766555667765433366677888888888888754
No 308
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.54 E-value=61 Score=20.03 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=26.2
Q ss_pred EEEEEeC---CcccHHHHHHHHHHHCCceEEEEEE
Q 028501 16 IVQLSFG---DRLGALIDTMNALKDLGLDVAKGTV 47 (208)
Q Consensus 16 ~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i 47 (208)
.|.+.|. ++||+.+++...|++.|+++.-...
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4666664 7899999999999999999985543
No 309
>PRK14645 hypothetical protein; Provisional
Probab=49.23 E-value=1.2e+02 Score=23.36 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 028501 140 PGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 201 (208)
Q Consensus 140 ~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~~ 201 (208)
..+-..+..++.++|+.+..+.+...++...-..+|.. +|..++=..++.+-+++...|+..
T Consensus 9 ~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~ 71 (154)
T PRK14645 9 PDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRL 71 (154)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccc
Confidence 44666778889999999999999877665555566664 466677777888888888888743
No 310
>PLN02550 threonine dehydratase
Probab=48.73 E-value=56 Score=30.94 Aligned_cols=34 Identities=9% Similarity=0.258 Sum_probs=29.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 164 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t 164 (208)
...+.|.-+||||-|.+++..|... ||.++.-..
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~ 450 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY 450 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe
Confidence 5789999999999999999999986 887776655
No 311
>PRK14640 hypothetical protein; Provisional
Probab=48.21 E-value=1.2e+02 Score=23.16 Aligned_cols=58 Identities=7% Similarity=0.012 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 028501 142 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 201 (208)
Q Consensus 142 lL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~~ 201 (208)
+...+...+.++|+.+..+.....+....-..+++. +| ++-..++.+-++|..+|+..
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~g--v~lddC~~vSr~is~~LD~~ 66 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENG--VSVENCAEVSHQVGAIMDVE 66 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHHHHHHHHHHHHHhccc
Confidence 445677788899999999999887766555666765 45 66677888888888888753
No 312
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=48.00 E-value=1.1e+02 Score=27.61 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=29.8
Q ss_pred CCCeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEE
Q 028501 11 NSDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGT 46 (208)
Q Consensus 11 ~~~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~ 46 (208)
.++...|++.+ .+.||+++++..+|...|++|....
T Consensus 375 ~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 375 EKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred cCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 34667888875 4789999999999999999998443
No 313
>PRK00341 hypothetical protein; Provisional
Probab=47.89 E-value=68 Score=22.40 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=25.7
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEE
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
+.+.|.|.+.+++...|..++..+. ......
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~ 48 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLST 48 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccc
Confidence 7899999999999999999998775 554443
No 314
>PRK14634 hypothetical protein; Provisional
Probab=47.35 E-value=1.3e+02 Score=23.16 Aligned_cols=61 Identities=16% Similarity=0.007 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501 25 LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 87 (208)
Q Consensus 25 pGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~ 87 (208)
.-+...+..++..+|+.+.+..+...+...+-..+|.... |..++ =+..+.+-..+...|+
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~-g~~v~-lddC~~vSr~is~~LD 67 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSS-GSDVS-LDDCAGFSGPMGEALE 67 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCC-CCccc-HHHHHHHHHHHHHHhc
Confidence 4456677788999999999999988766433344554443 63332 2456667777766664
No 315
>PRK14645 hypothetical protein; Provisional
Probab=46.99 E-value=1.3e+02 Score=23.15 Aligned_cols=63 Identities=24% Similarity=0.202 Sum_probs=41.0
Q ss_pred CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501 23 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 87 (208)
Q Consensus 23 DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~ 87 (208)
+..-+-..+..++..+|+.+.+..+...++..+-..+|...+ |..++ =+..+.+-..|...|+
T Consensus 7 ~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~-~~~v~-lddC~~vSr~is~~LD 69 (154)
T PRK14645 7 NNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKD-EQPVT-VEDLERASRALEAELD 69 (154)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCC-CCCcC-HHHHHHHHHHHHHHhc
Confidence 344567778899999999999999987765433234454332 43343 2456677777777664
No 316
>PRK08210 aspartate kinase I; Reviewed
Probab=46.13 E-value=44 Score=29.63 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=29.0
Q ss_pred eEEEEEEecCc-chHHHHHHHHHHhCCccEEEEEEE
Q 028501 129 RSLLYIETADR-PGLLVEIMKIIADVNVDVESAEID 163 (208)
Q Consensus 129 ~~~i~v~~~Dr-~GlL~~i~~~l~~~~i~I~~a~i~ 163 (208)
...+++.+.+. ||++++|..+|+++|+||.....+
T Consensus 271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 45677776665 999999999999999999988544
No 317
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=45.33 E-value=25 Score=26.05 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=26.2
Q ss_pred EEEEEEec---CcchHHHHHHHHHHhCCccEEEEEE
Q 028501 130 SLLYIETA---DRPGLLVEIMKIIADVNVDVESAEI 162 (208)
Q Consensus 130 ~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i 162 (208)
..+.+.++ |-+|+|+.|.+.|+++|+-|.-...
T Consensus 64 ~~lk~~gpf~FgltGilasV~~pLsd~gigIFavSt 99 (128)
T COG3603 64 SCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVST 99 (128)
T ss_pred EEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEe
Confidence 44555554 8999999999999999999876543
No 318
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=45.03 E-value=1e+02 Score=27.87 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=24.5
Q ss_pred CeEEEEEEeC---CcccHHHHHHHHHHHCCceEE
Q 028501 13 DATIVQLSFG---DRLGALIDTMNALKDLGLDVA 43 (208)
Q Consensus 13 ~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~ 43 (208)
+.+++.|.+. -+.|+|+.+..+|.++|+.+-
T Consensus 392 nv~mldI~Str~l~q~GFLAkvFti~ek~~isVD 425 (559)
T KOG0456|consen 392 NVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVD 425 (559)
T ss_pred cEEEEEecccchhhhhhHHHHHHHHHHHhCcEEE
Confidence 4456666553 367999999999999999986
No 319
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.65 E-value=52 Score=20.65 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=25.8
Q ss_pred EEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEE
Q 028501 131 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVS 176 (208)
Q Consensus 131 ~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~ 176 (208)
.+.+.|. ++||+++++..+|++ ++|.- .+.+.+... .|.+.
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~---i~~~~s~~~is~~V~ 47 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALED--INVRM---ICYGASNHNLCFLVK 47 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHh--CCeEE---EEEecCccEEEEEEe
Confidence 4566665 789999999999976 44433 223333333 36664
No 320
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=44.47 E-value=1.8e+02 Score=23.99 Aligned_cols=64 Identities=5% Similarity=0.053 Sum_probs=42.1
Q ss_pred eEEEEEEecCcch--HHHHHHHHHHhCCccEEEEEEEecC--CeEEEEEEEEeCCCCCChHHHHHHHHHH
Q 028501 129 RSLLYIETADRPG--LLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCL 194 (208)
Q Consensus 129 ~~~i~v~~~Dr~G--lL~~i~~~l~~~~i~I~~a~i~t~~--~~~~~~f~v~~~g~~~~~~~~~~l~~~l 194 (208)
++.+++.+.+.++ +...+.+.|.+.++.+.+.++...+ +...-...+...+.. +...+++..+|
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~--~~~le~iv~~L 209 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADY--RKTRELIISRI 209 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCc--hhhHHHHHHHH
Confidence 5788888877664 6899999999999999999997653 333433444333322 33345554444
No 321
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=43.44 E-value=1.5e+02 Score=22.66 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCC
Q 028501 142 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPE 202 (208)
Q Consensus 142 lL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~~~ 202 (208)
+-.-+..++..+|+.+..+.+...++...-..+|+. +| ++-..++.+-+++..+|+...
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~g--v~iddc~~~Sr~is~~LD~~d 68 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGG--IDLDDCEEVSRQISAVLDVED 68 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHHHHHHHHHHHHHhcccc
Confidence 445567788899999999999987666555566654 34 455678888888888887543
No 322
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.40 E-value=88 Score=19.80 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=30.1
Q ss_pred EEEEEeC--CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEe
Q 028501 16 IVQLSFG--DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61 (208)
Q Consensus 16 ~v~v~~~--DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~ 61 (208)
.|.+.+. ..+|+++++.++|.+.|++|.-....+.+..+ .|.|.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~si--s~~v~ 48 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASKVNI--SLIVN 48 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceE--EEEEe
Confidence 4556654 46899999999999999999844444443333 25554
No 323
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.58 E-value=90 Score=19.70 Aligned_cols=27 Identities=7% Similarity=0.026 Sum_probs=21.4
Q ss_pred EEEEEec---CcchHHHHHHHHHHhCCccE
Q 028501 131 LLYIETA---DRPGLLVEIMKIIADVNVDV 157 (208)
Q Consensus 131 ~i~v~~~---Dr~GlL~~i~~~l~~~~i~I 157 (208)
.+.+.|. +.||+++++.++|++.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 3556664 67999999999999987665
No 324
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=40.41 E-value=38 Score=26.30 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=28.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEE
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAK 44 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~ 44 (208)
...+.|.-+|+||-|-.+.+=|+..|.||..
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiIt 35 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIIT 35 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEE
Confidence 4567888999999999999999999999994
No 325
>PRK02047 hypothetical protein; Provisional
Probab=40.32 E-value=1.2e+02 Score=21.06 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=27.2
Q ss_pred EEEEEEecCcchHHHHHHHHHHhCCccEEEEEE
Q 028501 130 SLLYIETADRPGLLVEIMKIIADVNVDVESAEI 162 (208)
Q Consensus 130 ~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i 162 (208)
+.+.+.|.+.+++...|..++..+...+....+
T Consensus 17 ~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i 49 (91)
T PRK02047 17 FPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKI 49 (91)
T ss_pred CeEEEEEeCcHhHHHHHHHHHHHhCCCCccCce
Confidence 889999999999999999999988665444333
No 326
>PRK05925 aspartate kinase; Provisional
Probab=40.21 E-value=2.9e+02 Score=25.11 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=64.5
Q ss_pred CeEEEEEEeC-CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCC
Q 028501 13 DATIVQLSFG-DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 91 (208)
Q Consensus 13 ~~~~v~v~~~-DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~ 91 (208)
+.+.+++.+. ..+|.++++.+.|.++|++|.-. .+....+ .|.+...+ .. +...+.|...+..
T Consensus 299 ~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i--~s~~~si--s~~i~~~~----~~-----~~~~~~l~~~l~~--- 362 (440)
T PRK05925 299 NQALWSVDYNSLGLVRLEDVLGILRSLGIVPGLV--MAQNLGV--YFTIDDDD----IS-----EEYPQHLTDALSA--- 362 (440)
T ss_pred CEEEEEEecCCcchhHHHHHHHHHHHcCCcEEEE--eccCCEE--EEEEechh----cc-----HHHHHHHHHHhcC---
Confidence 4456666432 25788999999999999999633 2222222 35554321 11 1111222221211
Q ss_pred CchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec--CcchHHHHHHHHHHhCCccEEEEEEEecCCeE
Q 028501 92 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGLVA 169 (208)
Q Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~--Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~ 169 (208)
+ .+|.+.. +...|.+.|. -++|+.+.+..+|++.|+||..... ++.
T Consensus 363 ----------------------~---~~i~~~~---~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~---s~~- 410 (440)
T PRK05925 363 ----------------------F---GTVSCEG---PLALITMIGAKLASWKVVRTFTEKLRGYQTPVFCWCQ---SDM- 410 (440)
T ss_pred ----------------------C---ceEEEEC---CEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEEEEC---CCc-
Confidence 0 0122222 2356777664 2378999999999999999966432 333
Q ss_pred EEEEEEE
Q 028501 170 KDKFHVS 176 (208)
Q Consensus 170 ~~~f~v~ 176 (208)
.-.|.|.
T Consensus 411 ~is~vV~ 417 (440)
T PRK05925 411 ALNLVVN 417 (440)
T ss_pred eEEEEEe
Confidence 2246664
No 327
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=38.99 E-value=1.1e+02 Score=19.98 Aligned_cols=63 Identities=5% Similarity=0.108 Sum_probs=40.8
Q ss_pred EEEEEEeCCc-ccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDR-LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~Dr-pGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
..|.+.+... ..+++.+++.+ ....||..|.|....+..+-.|++.-. |.. ...++..+.|.+
T Consensus 5 ~~l~f~g~~~~~piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l~--g~~----~~~~~a~~~L~~ 68 (76)
T PF09383_consen 5 VRLTFTGNSAQEPIISQLIREF-GVDVNILHGNIEEIQGTPFGILILELP--GDD----EEIEKAIAYLRE 68 (76)
T ss_dssp EEEEEESCSSSSCHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEEE--S-H----HHHHHHHHHHHH
T ss_pred EEEEEcCCCcCchHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEEE--CCH----HHHHHHHHHHHH
Confidence 3455555554 34666666654 578999999999999998888888765 442 344444444443
No 328
>PRK06291 aspartate kinase; Provisional
Probab=38.89 E-value=1.1e+02 Score=27.75 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=33.5
Q ss_pred eEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 129 RSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
...|.+.|. +.+|+++++..+|+++|++|......+.. ..-.|.+.
T Consensus 321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~ 369 (465)
T PRK06291 321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVD 369 (465)
T ss_pred EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEe
Confidence 467888765 78999999999999999999877544311 22345554
No 329
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=38.38 E-value=1.3e+02 Score=20.54 Aligned_cols=51 Identities=12% Similarity=0.082 Sum_probs=35.9
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCC
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKV 69 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~ 69 (208)
.....+.+...| +..+...|...|+++....... +++. ..|++.+++ |..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~-~~~~-~~~~~~DPd-G~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDI-PGVG-RFAVFADPE-GAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCccc-CCcE-EEEEEECCC-CCEE
Confidence 455677777787 6778888999999988654332 2222 468999997 8754
No 330
>PRK09084 aspartate kinase III; Validated
Probab=37.54 E-value=2.1e+02 Score=25.99 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=34.6
Q ss_pred CeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 128 KRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 128 ~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
+...++|.+. +.+|++++|..+|+++|++|.-+..+ + ..-.|.+..
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ss---e-~sIs~~i~~ 353 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITTS---E-VSVSLTLDT 353 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEecc---C-cEEEEEEec
Confidence 3567888765 68999999999999999999988632 1 233566654
No 331
>PRK04998 hypothetical protein; Provisional
Probab=36.19 E-value=1.4e+02 Score=20.46 Aligned_cols=66 Identities=8% Similarity=0.001 Sum_probs=40.2
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceE--EEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDV--AKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I--~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
+..+.+.|.+++.+++...|..++..+.-.- ...+-++.|.+..-+..+.-. +++.+..|.+.|.+
T Consensus 13 Pc~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~-------s~eq~~~iY~~L~~ 80 (88)
T PRK04998 13 PCSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITAT-------SIEQVETLYEELAK 80 (88)
T ss_pred CCCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEEC-------CHHHHHHHHHHHhc
Confidence 4557899999999999999999998773222 223334444444322333322 23555666666543
No 332
>PLN02551 aspartokinase
Probab=35.52 E-value=1.5e+02 Score=27.68 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=34.4
Q ss_pred CCeEEEEEEeC--CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEee
Q 028501 12 SDATIVQLSFG--DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 62 (208)
Q Consensus 12 ~~~~~v~v~~~--DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~ 62 (208)
++...|.|++. ..+|+++++..+|...|+||.-....+..-.+ .|.|..
T Consensus 443 ~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinI--S~vV~~ 493 (521)
T PLN02551 443 QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNI--SLIVND 493 (521)
T ss_pred CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEE--EEEEeH
Confidence 46677888864 68999999999999999999843332322222 366653
No 333
>PRK09034 aspartate kinase; Reviewed
Probab=34.96 E-value=3.2e+02 Score=24.80 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=30.0
Q ss_pred CCeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEE
Q 028501 12 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTV 47 (208)
Q Consensus 12 ~~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i 47 (208)
++...|++.+ .+.||+++++..+|.+.|++|.-...
T Consensus 383 ~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq 421 (454)
T PRK09034 383 HDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ 421 (454)
T ss_pred CCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4667888975 47899999999999999999985543
No 334
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=34.46 E-value=67 Score=21.82 Aligned_cols=66 Identities=5% Similarity=-0.060 Sum_probs=40.7
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHHCC----ceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 028501 11 NSDATIVQLSFGDRLGALIDTMNALKDLG----LDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 83 (208)
Q Consensus 11 ~~~~~~v~v~~~DrpGLl~~i~~~L~~~g----l~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~ 83 (208)
.+....+.+++.+..++...|..++..+- -.....+.++.|.+..-++.+.-. +++.+..+.+.|.
T Consensus 7 fP~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~-------s~eq~~~iy~~L~ 76 (85)
T PF04359_consen 7 FPCDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVE-------SAEQVDAIYRELK 76 (85)
T ss_dssp SSCEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEES-------SHHHHHHHHHHHT
T ss_pred CCCcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEEC-------CHHHHHHHHHHhc
Confidence 45678999999999999999999998863 334444444444454433334332 2455555555543
No 335
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=33.04 E-value=61 Score=19.92 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=14.7
Q ss_pred EEeCCCCCChHHHHHHHHHHH
Q 028501 175 VSYGGAALNSSLSQVLVNCLR 195 (208)
Q Consensus 175 v~~~g~~~~~~~~~~l~~~l~ 195 (208)
|+-.|+||+++.++.++..+-
T Consensus 24 vSf~GrPltdevK~a~k~i~~ 44 (49)
T PF06543_consen 24 VSFDGRPLTDEVKEAMKLIFG 44 (49)
T ss_pred eeeCCeeCCHHHHHHHHHHHh
Confidence 445899999887766665443
No 336
>PRK13431 F0F1 ATP synthase subunit delta; Provisional
Probab=33.04 E-value=1.6e+02 Score=23.28 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=41.9
Q ss_pred ecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501 136 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 136 ~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
-.+|-++|-.|+..|....-++..+.+.| -.|++++.++.|++.|...+++
T Consensus 86 en~Rl~~LpeIa~~L~~~~~~i~~~~V~S--------------A~~Ls~~~~~~I~~~L~kk~g~ 136 (180)
T PRK13431 86 KNNRLDMLELITEELSFDSKRTLEATLLV--------------PEKLENNELEAVQQKLQARFNA 136 (180)
T ss_pred HcChHHHHHHHHHHHHHHHcCeEEEEEEe--------------cccCCHHHHHHHHHHHHHHHCC
Confidence 36899999999999988888888888774 6778888888898888877654
No 337
>PRK08841 aspartate kinase; Validated
Probab=32.76 E-value=78 Score=28.23 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=29.5
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEE
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVA 43 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~ 43 (208)
.+...|.+.+...||+.+++..+|.+.|++|.
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~ 347 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVR 347 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEE
Confidence 46678999999999999999999999999996
No 338
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.97 E-value=84 Score=23.33 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 140 PGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 140 ~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
-|...++++.|+++|+.+....|..........|+++|
T Consensus 22 iG~~~~VA~~L~e~g~dv~atDI~~~~a~~g~~~v~DD 59 (129)
T COG1255 22 IGFFLDVAKRLAERGFDVLATDINEKTAPEGLRFVVDD 59 (129)
T ss_pred cchHHHHHHHHHHcCCcEEEEecccccCcccceEEEcc
Confidence 47789999999999999998888765444444577766
No 339
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.24 E-value=1.7e+02 Score=19.77 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=36.7
Q ss_pred CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 22 GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 22 ~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
....|++.++.++|.++|+++. ++-|.-|.+. .++.+ ..+.+ ++.+++...|++.+
T Consensus 12 n~evGF~rk~L~I~E~~~is~E--h~PSGID~~S--iii~~----~~~~~-~~~~~i~~~i~~~~ 67 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYE--HMPSGIDDIS--IIIRD----NQLTD-EKEQKILAEIKEEL 67 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEe--eecCCCccEE--EEEEc----cccch-hhHHHHHHHHHHhc
Confidence 4567999999999999999999 6655555442 33432 22432 25566666666644
No 340
>PRK14647 hypothetical protein; Provisional
Probab=30.85 E-value=2.5e+02 Score=21.61 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 028501 142 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 201 (208)
Q Consensus 142 lL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~~ 201 (208)
+-.-+..++.++|+.+..+.+...+....-..+++. +| ++=..++.+-+++...|+..
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~g--vslddC~~vSr~is~~LD~~ 68 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGG--VNLDDCAEVSRELSEILDVE 68 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCC--CCHHHHHHHHHHHHHHHccc
Confidence 334566778899999999999987766555566654 44 45566788888888888753
No 341
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=29.95 E-value=2.3e+02 Score=20.97 Aligned_cols=51 Identities=10% Similarity=0.008 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCe-EEEEEEEEeCCCCCChHHHHHHHHHH
Q 028501 142 LLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCL 194 (208)
Q Consensus 142 lL~~i~~~l~~~~i~I~~a~i~t~~~~-~~~~f~v~~~g~~~~~~~~~~l~~~l 194 (208)
=+..+.++|.++||.|..++=.-..+. ..-..++...|.| ..+.+.++++|
T Consensus 69 EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~gdp--~~lA~~vr~Al 120 (123)
T PF07485_consen 69 EVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGVGDP--AKLARKVRAAL 120 (123)
T ss_pred HHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEecCCH--HHHHHHHHHHH
Confidence 357789999999999999886544443 2223334446666 23334444443
No 342
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=28.27 E-value=63 Score=29.01 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=30.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEE
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTV 47 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i 47 (208)
.+.|.|.||-||.-++...|...++|+....|
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEi 33 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI 33 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceee
Confidence 47899999999999999999999999998888
No 343
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=27.78 E-value=3.1e+02 Score=27.15 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=27.8
Q ss_pred eEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501 129 RSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 129 ~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
.+.|++.+. +.+|++++|...|+++|++|.-+.
T Consensus 322 v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~ 357 (861)
T PRK08961 322 IVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLIS 357 (861)
T ss_pred EEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEE
Confidence 467787644 689999999999999999998774
No 344
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=27.75 E-value=1.6e+02 Score=22.91 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=43.4
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCCC
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDI 205 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 205 (208)
.+-.+.|...+|.++.+.+.+.|..|.++-++-. . +.-|+. +.++++++.|.+.|.-+.+.+
T Consensus 66 ~~~kgadS~~lL~~~~~~v~~~g~~i~Nvd~tii---------~--~~PK~~-P~~~amr~~ia~~L~i~~~~i 127 (159)
T COG0245 66 PRWKGADSRILLKEAVELVREKGYRIGNVDITII---------A--QRPKLG-PYREAMRANIAELLGIPVDRI 127 (159)
T ss_pred cccCCCchHHHHHHHHHHHHHhCcEEEeEEEEEE---------E--ecCccc-chHHHHHHHHHHHhCCCchhe
Confidence 3445788889999999999999999999887732 2 222222 245777777777776665543
No 345
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=27.68 E-value=1.4e+02 Score=27.06 Aligned_cols=70 Identities=10% Similarity=0.156 Sum_probs=45.3
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe---eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 11 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV---KQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 11 ~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~---~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
+.....+.+.-+|+||-+.+++.++...++++.+ +.....+ ++-+|.+...+ .. .+....+|++.+.++.
T Consensus 370 ~~~~v~l~v~l~d~pG~~~~l~~~i~~~~~se~~--~~~~~~~~~~v~t~~v~~~~e-~~---~~~~~~ql~~~~~~~~ 442 (457)
T KOG1250|consen 370 SNREVRLLVALPDRPGGFNKLTELIGPLSVSEKD--IRHERAWMRNVYTSFVKVVRE-TE---GKEHEQQLKQKLKKAY 442 (457)
T ss_pred CCceEeeeeecccCCCcchhhHHhhcccccchhh--hhhhHHHhhhheEEEEEEEEe-cc---cHHHHHHHHHhhhhee
Confidence 3344567888899999999999999999998873 4433333 34556665543 22 1344455655555533
No 346
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.67 E-value=1.9e+02 Score=19.71 Aligned_cols=52 Identities=10% Similarity=0.136 Sum_probs=34.3
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCC
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKV 69 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~ 69 (208)
+...+.+...|... +..+...+..+|..+...-.. .+.+. .|++.|++ |+.+
T Consensus 59 ~~~~~~~~v~~~~~-~~~~~~~~~~~g~~v~~~~~~-~~~g~--~~~~~DPd-Gn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAA-VDALYAEWQAKGVKIIQEPTE-MDFGY--TFVALDPD-GHRL 110 (114)
T ss_pred CceEEEEEcCCHHH-HHHHHHHHHHCCCeEecCccc-cCCcc--EEEEECCC-CCEE
Confidence 44567777777555 466777788899998754322 22222 47899997 8864
No 347
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.64 E-value=2e+02 Score=19.40 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=30.9
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEE
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF 173 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f 173 (208)
.+.|.-++|||-|......|.. +.||...+=.-.++....+|
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vl 44 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVL 44 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEE
Confidence 5678889999999999999943 77888877665555443443
No 348
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=27.03 E-value=2.3e+02 Score=19.89 Aligned_cols=66 Identities=6% Similarity=-0.059 Sum_probs=45.1
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEe----cCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT----EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t----~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
+..+.+.|.+..+|+|--++..++..++-.-..-+++. .|.+..-+..+...+ -+.++.+.+.|.+
T Consensus 13 Pc~F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~-------~EQ~e~ly~eL~~ 82 (90)
T COG2921 13 PCTFTYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATN-------IEQVEALYRELRK 82 (90)
T ss_pred CccceeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEECC-------HHHHHHHHHHHhh
Confidence 45678999999999999999999999988888777733 334433334444332 2455555555543
No 349
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.47 E-value=2.1e+02 Score=19.45 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=33.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-eeEEEEEEeeCCCCCCC
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKV 69 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~~d~F~v~~~~~g~~~ 69 (208)
.+.+...+. +..+...|...|+.+...-....+. +....|++.+++ |..+
T Consensus 70 hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPd-G~~v 120 (125)
T cd07253 70 DLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPD-GNLI 120 (125)
T ss_pred eEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCC-CCEE
Confidence 444555544 8889999999999987655443322 223457889997 8754
No 350
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=26.38 E-value=78 Score=22.28 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=32.5
Q ss_pred ecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 028501 136 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL 198 (208)
Q Consensus 136 ~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l 198 (208)
..+|+.++.+|.+++.+.|. |+|.+.| ++.++.+++.+...+..
T Consensus 10 ~~~~~~~~~~l~~A~~~~GF-----------------f~l~nhG--i~~~l~~~~~~~~~~fF 53 (116)
T PF14226_consen 10 PADREEVAEQLRDACEEWGF-----------------FYLVNHG--IPQELIDRVFAAAREFF 53 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTSE-----------------EEEESSS--SSHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCE-----------------EEEeccc--ccchhhHHHHHHHHHHH
Confidence 46688899999999999998 8887666 44666666665555444
No 351
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=25.82 E-value=2.6e+02 Score=21.66 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=40.2
Q ss_pred EecCcchHHHHHHHHHHhC---CccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501 135 ETADRPGLLVEIMKIIADV---NVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 135 ~~~Dr~GlL~~i~~~l~~~---~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
.-.+|-++|.+|...+... .-++..+.+.| ..+++++.++.|++.|....++
T Consensus 78 i~n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~S--------------A~~Ls~~q~~~i~~~l~~~~g~ 132 (176)
T PRK08474 78 AENKRLELIPAIAKELERQIALKENEYVGVVYS--------------NEKLSEETLKKLEEKLSKKFNA 132 (176)
T ss_pred HHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEE--------------CccCCHHHHHHHHHHHHHHhCC
Confidence 3478999999999888755 55667777663 6788888889999998877654
No 352
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=25.52 E-value=1e+02 Score=32.23 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=36.3
Q ss_pred CCEEEEeecCCCC--eEEEEEEeCCcccHHHHHHHHHHHCCceEEE
Q 028501 1 MPHVLIDQDSNSD--ATIVQLSFGDRLGALIDTMNALKDLGLDVAK 44 (208)
Q Consensus 1 ~p~V~~~~~~~~~--~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~ 44 (208)
+|.|.+.+...+. ++.|+|..+|.|-|+-.|.+.|..+|+.++-
T Consensus 73 ~~~V~v~~~v~~~g~~~~l~Iv~~~~pfl~Dsv~~~l~~~~~~~~~ 118 (1592)
T COG2902 73 APCVRVYPGVAEHGPVTALQIVLDNMPFLVDSVMGELTRLGLQIHL 118 (1592)
T ss_pred CceEEecCCcccCCCceeEEEEcCCCCeeehhHHHHHHhcccceEE
Confidence 4677776444443 4899999999999999999999999999874
No 353
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=24.55 E-value=2.8e+02 Score=21.46 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=40.9
Q ss_pred EecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCC
Q 028501 135 ETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPET 203 (208)
Q Consensus 135 ~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 203 (208)
.+.|..-+|.++.+.+.+.|..|.++.++-.. +--|+ .+-++++++.|..+|.-+..
T Consensus 68 k~~~S~~lL~~~~~~~~~~g~~i~niD~tii~-----------e~PKi-~p~~~~m~~~la~~L~~~~~ 124 (155)
T TIGR00151 68 KGADSRVLLRHAVALIKEKGYRIGNVDITIIA-----------QRPKL-LPHIPAMRENIAELLGIPLD 124 (155)
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEc-----------CCCcc-hHHHHHHHHHHHHHhCCCcc
Confidence 36778999999999999999999999877322 22222 23457777777777765543
No 354
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=24.46 E-value=2.8e+02 Score=21.44 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=41.0
Q ss_pred EecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCC
Q 028501 135 ETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPET 203 (208)
Q Consensus 135 ~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 203 (208)
.+.|..-||.++.+.+.+.|..|.++.++- .. +-=|+ .+.++++++.|..+|.-+..
T Consensus 68 k~~~S~~lL~~~~~~~~~~g~~i~niD~ti---------i~--e~PKi-~p~~~~m~~~ls~~L~~~~~ 124 (153)
T cd00554 68 KGADSRILLEEALKLIREKGYEIVNIDITI---------IA--ERPKI-SPYREAMRANLAELLGIPPS 124 (153)
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEEEEEEE---------Ee--cCCcc-hHHHHHHHHHHHHHhCCCCc
Confidence 356889999999999999999999998773 22 12222 23557777787777765543
No 355
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=24.11 E-value=2.8e+02 Score=20.04 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=28.8
Q ss_pred cCCCCeEEEEEEeCCccc-HHHHHHHHHHHCCceEEEE
Q 028501 9 DSNSDATIVQLSFGDRLG-ALIDTMNALKDLGLDVAKG 45 (208)
Q Consensus 9 ~~~~~~~~v~v~~~DrpG-Ll~~i~~~L~~~gl~I~~a 45 (208)
....|+..|.|+..+... .+..+...|..+||.+...
T Consensus 47 v~~sGnsTiRv~~~~~~~~~~~~v~~~l~~lG~~~E~~ 84 (117)
T PF14085_consen 47 VESSGNSTIRVIFDDPGPDDIEAVREELEALGCTVEGF 84 (117)
T ss_pred EecCCCEEEEEEEcCCcchhHHHHHHHHHHcCCeEEcc
Confidence 344577788888766555 8999999999999998843
No 356
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=23.09 E-value=59 Score=23.44 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=21.7
Q ss_pred CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCCh
Q 028501 138 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNS 184 (208)
Q Consensus 138 Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~ 184 (208)
||. .-|+||.+|.++|++ ..+...-...|.+ +|..|++
T Consensus 53 dRl-ykydIT~~l~~l~l~--------~~~~f~i~~~i~~~nGt~l~~ 91 (103)
T PF14830_consen 53 DRL-YKYDITDALKKLGLH--------YDDPFHIKVEITAVNGTELPS 91 (103)
T ss_dssp SS--EEEE-HHHHHHCT----------TTSSEEEEEEEEESSSSBE-C
T ss_pred Ccc-chhhHHHHHHHcCCC--------CCCCEEEEEEEEecCCCCCcc
Confidence 444 347899999999998 3444444455555 7777654
No 357
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=23.01 E-value=3e+02 Score=27.21 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=30.4
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEE
Q 028501 12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTV 47 (208)
Q Consensus 12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i 47 (208)
++...|+|.+. ++||+.+++.++|.+.|++|.-...
T Consensus 394 ~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isq 432 (819)
T PRK09436 394 ENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQ 432 (819)
T ss_pred CCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 46778999885 7899999999999999999984443
No 358
>PRK14630 hypothetical protein; Provisional
Probab=22.90 E-value=3.4e+02 Score=20.52 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=44.9
Q ss_pred CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 028501 138 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP 201 (208)
Q Consensus 138 Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~~ 201 (208)
|..-+-..+..++..+|+.+..+.....++...-..+++. +| ++=..++.+-+++...|+.|
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--V~idDC~~vSr~i~~~ld~~ 68 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDS--FGVDTLCDLHKMILLILEAV 68 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHHHHHHHHHHHHHhccc
Confidence 5555667788899999999999998876665555667765 45 55556677777777666654
No 359
>PLN02997 flavonol synthase
Probab=22.84 E-value=2.3e+02 Score=24.44 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=34.8
Q ss_pred EEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCCC
Q 028501 132 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRP 201 (208)
Q Consensus 132 i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~~ 201 (208)
|.+...|+..++.+|.+++.+.|+ |+|.+.|- +.++.+.+.+...+....|
T Consensus 36 IDls~~~~~~~~~~l~~Ac~~~GF-----------------F~v~nHGI--~~~li~~~~~~~~~FF~LP 86 (325)
T PLN02997 36 VDLSVSDEDFLVREVVKASEEWGV-----------------FQVVNHGI--PTELMRQLQMVGKQFFELP 86 (325)
T ss_pred EECCCCCHHHHHHHHHHHHHHCCE-----------------EEEECCCC--CHHHHHHHHHHHHHHHcCC
Confidence 344444677899999999999999 88876554 4666666665555444433
No 360
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=22.84 E-value=2.4e+02 Score=18.71 Aligned_cols=58 Identities=10% Similarity=0.248 Sum_probs=37.1
Q ss_pred EEEEeCC---cccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 17 VQLSFGD---RLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 17 v~v~~~D---rpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
|.|+.+| .+|.-+.|..+|.+++++|..- .+..+.. +.++..+ .+.++++...|++.+
T Consensus 4 levfdqdMvG~~g~d~~i~~~l~~~~v~ii~K--~~nANti--t~yl~~~--------~k~~~r~~~~Le~~~ 64 (71)
T cd04910 4 LEVFDQDMVGEVGYDLEILELLQRFKVSIIAK--DTNANTI--THYLAGS--------LKTIKRLTEDLENRF 64 (71)
T ss_pred EEEeCCCccCChhHHHHHHHHHHHcCCeEEEE--ecCCCeE--EEEEEcC--------HHHHHHHHHHHHHhC
Confidence 4555444 5888999999999999999944 4444433 2444422 145567777776644
No 361
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=22.75 E-value=2.3e+02 Score=18.63 Aligned_cols=48 Identities=19% Similarity=0.294 Sum_probs=32.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCC
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKV 69 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~ 69 (208)
...+.+..+| +..+...+...|+.+....-- ..-...|++.|++ |..+
T Consensus 65 ~~~~~~~v~d----~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~DP~-G~~i 112 (114)
T cd07245 65 DDHIAFRVDD----LDAFRARLKAAGVPYTESDVP---GDGVRQLFVRDPD-GNRI 112 (114)
T ss_pred cceEEEEeCC----HHHHHHHHHHcCCCcccccCC---CCCccEEEEECCC-CCEE
Confidence 3456667777 678899999999998754321 1122347888986 8753
No 362
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=22.24 E-value=2.4e+02 Score=24.42 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=34.5
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR 199 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~ 199 (208)
+|.+...++..++.+|.+++.+.|+ |+|.+.|-+ .++.+++.+...+...
T Consensus 40 vIDls~~~~~~~~~~l~~Ac~~~GF-----------------f~v~nHGI~--~~l~~~~~~~~~~fF~ 89 (337)
T PLN02639 40 VIDLGSPDRAQVVQQIGDACRRYGF-----------------FQVINHGVS--AELVEKMLAVAHEFFR 89 (337)
T ss_pred eEECCCccHHHHHHHHHHHHHhCCE-----------------EEEEcCCCC--HHHHHHHHHHHHHHhc
Confidence 4555556788899999999999999 888765544 5555555555444433
No 363
>PRK14643 hypothetical protein; Provisional
Probab=22.09 E-value=3.8e+02 Score=20.80 Aligned_cols=61 Identities=10% Similarity=-0.092 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe---CCCCCChHHHHHHHHHHHHHcCCCC
Q 028501 142 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY---GGAALNSSLSQVLVNCLRYYLRRPE 202 (208)
Q Consensus 142 lL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~---~g~~~~~~~~~~l~~~l~~~l~~~~ 202 (208)
+-.-+...+..+|+.+..+...+.++...-..+|++ .+..++=..++.+-+++...|+...
T Consensus 11 l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD~~d 74 (164)
T PRK14643 11 INELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKIDQFI 74 (164)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhCccC
Confidence 445566778899999999999988776655677753 2234666677888888888887443
No 364
>PRK14632 hypothetical protein; Provisional
Probab=21.75 E-value=4e+02 Score=20.86 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCC
Q 028501 142 LLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPE 202 (208)
Q Consensus 142 lL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~~~ 202 (208)
+-.-+..++.++|+.+..+.... ++...-..+|+. +| ++=..++.+-++|..+|+...
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~~G--V~ldDC~~vSr~is~~LD~~d 68 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSY-GGRTVVRLFVDGPEG--VTIDQCAEVSRHVGLALEVED 68 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEe-CCCcEEEEEEECCCC--CCHHHHHHHHHHHHHHhcccc
Confidence 33456667889999999999875 444334556654 44 555677888888888887543
No 365
>PRK09181 aspartate kinase; Validated
Probab=21.08 E-value=3.7e+02 Score=24.66 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.8
Q ss_pred CCeEEEEEEeCC--cccHHHHHHHHHHHCCceEEE
Q 028501 12 SDATIVQLSFGD--RLGALIDTMNALKDLGLDVAK 44 (208)
Q Consensus 12 ~~~~~v~v~~~D--rpGLl~~i~~~L~~~gl~I~~ 44 (208)
++...|.+++.. +||+.+++.++|.+.|+||..
T Consensus 400 ~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~ 434 (475)
T PRK09181 400 RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLA 434 (475)
T ss_pred CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEE
Confidence 566789998755 899999999999999999983
No 366
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=20.83 E-value=2.2e+02 Score=25.92 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=33.5
Q ss_pred CeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 128 KRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 128 ~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
+.+.+.|.+. ..+|++++|..+|+++|+++..+........ -.|.+.
T Consensus 306 ~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~ 355 (447)
T COG0527 306 NVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVP 355 (447)
T ss_pred CeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEc
Confidence 4567777665 3459999999999999999987765432222 456664
No 367
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=20.52 E-value=4e+02 Score=20.75 Aligned_cols=53 Identities=19% Similarity=0.051 Sum_probs=39.5
Q ss_pred EEecCcchHHHHHHHHHHhC---CccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 028501 134 IETADRPGLLVEIMKIIADV---NVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR 200 (208)
Q Consensus 134 v~~~Dr~GlL~~i~~~l~~~---~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~ 200 (208)
+.-.+|-++|.+|...+... .-++..+.+.| ..|++++.++.|++.|....++
T Consensus 78 L~e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~s--------------A~~Ls~~q~~~l~~~L~k~~g~ 133 (184)
T PRK13434 78 LLNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVS--------------YPSLEPAQVDKLGSILSEKFKS 133 (184)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEE--------------cCCCCHHHHHHHHHHHHHHHCC
Confidence 34478899999999988643 45566666653 6788888889999998876654
No 368
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=20.16 E-value=3.7e+02 Score=20.90 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=40.5
Q ss_pred ecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCC
Q 028501 136 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPET 203 (208)
Q Consensus 136 ~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~~~~ 203 (208)
+.|..-+|.++.+.+.+.|..|.++.++-.. +-=|+ .+.++++++.|..+|.-+..
T Consensus 72 g~~S~~lL~~~~~~~~~~g~~i~niD~tii~-----------e~PKi-~p~~~~m~~~la~~L~i~~~ 127 (159)
T PRK00084 72 GADSRVLLREVARLLRAKGYRIGNVDITIIA-----------QRPKM-APHIEEMRANIAEDLGIPLD 127 (159)
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEEEEEEEEc-----------CCCcc-hHHHHHHHHHHHHHhCCCcc
Confidence 5778899999999999999999999877321 22222 23557777887777776543
Done!