Query 028501
Match_columns 208
No_of_seqs 183 out of 1422
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 20:49:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nyi_A Unknown protein; protei 99.8 1.3E-19 4.4E-24 144.7 13.4 157 13-198 4-163 (195)
2 1u8s_A Glycine cleavage system 99.8 2.6E-18 9E-23 136.5 15.2 154 14-197 6-165 (192)
3 3p96_A Phosphoserine phosphata 99.2 7.9E-10 2.7E-14 96.8 17.4 138 13-176 11-149 (415)
4 2f06_A Conserved hypothetical 98.8 3E-07 1E-11 69.0 16.2 112 15-175 7-118 (144)
5 1zpv_A ACT domain protein; str 98.5 1.1E-06 3.7E-11 60.6 10.3 48 129-176 5-52 (91)
6 1zpv_A ACT domain protein; str 98.5 1.2E-06 4.2E-11 60.3 9.7 65 13-84 4-68 (91)
7 2nyi_A Unknown protein; protei 98.5 2.2E-07 7.6E-12 73.5 6.6 71 12-86 91-163 (195)
8 1u8s_A Glycine cleavage system 98.4 2.2E-06 7.4E-11 67.4 10.2 65 129-198 6-70 (192)
9 2ko1_A CTR148A, GTP pyrophosph 98.3 9.3E-06 3.2E-10 55.1 9.7 48 129-176 5-52 (88)
10 2ko1_A CTR148A, GTP pyrophosph 98.1 2E-05 6.8E-10 53.4 9.1 48 14-61 5-52 (88)
11 2re1_A Aspartokinase, alpha an 98.0 0.00022 7.4E-09 54.7 13.7 111 12-161 23-138 (167)
12 3o1l_A Formyltetrahydrofolate 97.8 8.5E-05 2.9E-09 62.5 9.5 66 13-84 21-88 (302)
13 2dt9_A Aspartokinase; protein- 97.8 0.00047 1.6E-08 52.7 13.0 111 11-161 13-130 (167)
14 3obi_A Formyltetrahydrofolate 97.8 0.00013 4.6E-09 60.9 9.6 65 14-84 6-72 (288)
15 3lou_A Formyltetrahydrofolate 97.7 0.00019 6.5E-09 60.1 10.2 37 128-164 9-45 (292)
16 3n0v_A Formyltetrahydrofolate 97.7 0.00016 5.3E-09 60.5 9.5 65 13-84 7-73 (286)
17 3o1l_A Formyltetrahydrofolate 97.7 0.00029 1E-08 59.2 11.2 39 127-165 20-58 (302)
18 2dtj_A Aspartokinase; protein- 97.7 0.0004 1.4E-08 53.8 11.1 112 11-161 12-130 (178)
19 3nrb_A Formyltetrahydrofolate 97.7 0.00017 5.7E-09 60.3 9.3 39 12-50 5-43 (287)
20 3nrb_A Formyltetrahydrofolate 97.7 0.00022 7.5E-09 59.6 10.0 37 128-164 6-42 (287)
21 3lou_A Formyltetrahydrofolate 97.7 0.00017 5.8E-09 60.4 9.2 38 13-50 9-46 (292)
22 3obi_A Formyltetrahydrofolate 97.6 0.00048 1.6E-08 57.5 11.3 36 129-164 6-41 (288)
23 3p96_A Phosphoserine phosphata 97.6 0.00012 4E-09 63.8 7.9 49 128-176 11-59 (415)
24 3n0v_A Formyltetrahydrofolate 97.6 0.00043 1.5E-08 57.8 10.9 37 129-165 8-44 (286)
25 2f1f_A Acetolactate synthase i 97.6 0.00022 7.5E-09 54.8 8.3 64 129-197 3-68 (164)
26 2pc6_A Probable acetolactate s 97.6 0.00041 1.4E-08 53.3 9.2 64 129-197 4-69 (165)
27 3s1t_A Aspartokinase; ACT doma 97.4 0.0048 1.7E-07 47.8 13.6 111 12-161 14-131 (181)
28 2f1f_A Acetolactate synthase i 97.3 0.001 3.4E-08 51.1 7.7 62 15-84 4-67 (164)
29 2pc6_A Probable acetolactate s 97.2 0.0014 4.7E-08 50.3 7.7 62 15-84 5-68 (165)
30 2jhe_A Transcription regulator 97.1 0.0023 8E-08 48.5 8.9 35 131-165 2-36 (190)
31 2fgc_A Acetolactate synthase, 97.1 0.0013 4.6E-08 51.5 7.5 63 129-196 29-93 (193)
32 1y7p_A Hypothetical protein AF 97.1 0.001 3.4E-08 53.2 6.8 38 129-166 4-41 (223)
33 4go7_X Aspartokinase; transfer 97.1 0.0048 1.6E-07 48.8 10.5 112 11-161 32-150 (200)
34 3ab4_A Aspartokinase; aspartat 96.9 0.023 8E-07 49.6 14.5 110 13-161 263-379 (421)
35 2fgc_A Acetolactate synthase, 96.8 0.0077 2.6E-07 47.2 8.9 63 14-84 29-93 (193)
36 2jhe_A Transcription regulator 96.6 0.012 4E-07 44.5 9.1 59 16-84 2-60 (190)
37 2qmx_A Prephenate dehydratase; 96.4 0.011 3.7E-07 49.2 8.1 58 129-186 200-258 (283)
38 3luy_A Probable chorismate mut 96.4 0.038 1.3E-06 46.9 11.2 61 130-190 207-270 (329)
39 2f06_A Conserved hypothetical 96.2 0.016 5.6E-07 42.7 7.5 39 129-167 6-44 (144)
40 1y7p_A Hypothetical protein AF 96.2 0.011 3.6E-07 47.2 6.5 38 14-51 4-41 (223)
41 3mwb_A Prephenate dehydratase; 96.0 0.017 5.8E-07 48.7 7.3 63 128-190 200-264 (313)
42 3c1m_A Probable aspartokinase; 96.0 0.11 3.9E-06 46.0 13.0 113 13-160 317-438 (473)
43 1sc6_A PGDH, D-3-phosphoglycer 96.0 0.022 7.4E-07 49.7 8.0 50 128-177 330-379 (404)
44 2qmw_A PDT, prephenate dehydra 95.6 0.036 1.2E-06 45.6 7.4 52 129-181 186-241 (267)
45 3tvi_A Aspartokinase; structur 95.5 0.12 4.2E-06 45.5 11.0 109 13-163 297-411 (446)
46 1ygy_A PGDH, D-3-phosphoglycer 95.3 0.13 4.3E-06 46.3 10.6 62 128-192 453-516 (529)
47 3l76_A Aspartokinase; alloster 95.2 0.41 1.4E-05 43.7 13.9 111 12-161 442-562 (600)
48 3l76_A Aspartokinase; alloster 95.0 1.7 5.7E-05 39.7 17.3 136 12-176 353-498 (600)
49 2cdq_A Aspartokinase; aspartat 94.0 0.39 1.3E-05 43.0 10.5 122 13-176 340-467 (510)
50 3mah_A Aspartokinase; aspartat 94.0 0.11 3.7E-06 38.9 5.8 112 13-176 17-134 (157)
51 3mtj_A Homoserine dehydrogenas 92.9 0.28 9.4E-06 43.2 7.4 37 128-164 358-394 (444)
52 1sc6_A PGDH, D-3-phosphoglycer 92.6 0.46 1.6E-05 41.2 8.4 48 13-60 330-377 (404)
53 1ygy_A PGDH, D-3-phosphoglycer 92.2 0.92 3.2E-05 40.6 10.2 40 13-52 453-492 (529)
54 1phz_A Protein (phenylalanine 91.7 0.25 8.7E-06 43.1 5.7 68 128-197 33-101 (429)
55 3k5p_A D-3-phosphoglycerate de 91.6 0.59 2E-05 40.8 7.9 49 128-176 342-390 (416)
56 2re1_A Aspartokinase, alpha an 91.0 0.67 2.3E-05 34.8 6.9 48 129-176 25-74 (167)
57 3k5p_A D-3-phosphoglycerate de 89.7 1.3 4.4E-05 38.6 8.3 43 13-55 342-384 (416)
58 2dtj_A Aspartokinase; protein- 88.8 1.4 4.7E-05 33.5 7.1 38 128-165 14-52 (178)
59 2dt9_A Aspartokinase; protein- 88.7 0.63 2.2E-05 35.0 5.1 50 128-177 15-68 (167)
60 2qmx_A Prephenate dehydratase; 87.8 3.6 0.00012 33.8 9.4 64 14-84 200-264 (283)
61 3mwb_A Prephenate dehydratase; 86.0 4.5 0.00015 33.8 9.1 53 13-67 200-254 (313)
62 3luy_A Probable chorismate mut 86.0 8.9 0.0003 32.2 11.0 63 15-84 207-272 (329)
63 4go7_X Aspartokinase; transfer 83.4 1.2 4.2E-05 34.8 4.3 48 129-176 35-86 (200)
64 2qmw_A PDT, prephenate dehydra 80.4 12 0.0004 30.5 9.3 50 13-62 185-238 (267)
65 3s1t_A Aspartokinase; ACT doma 80.3 3.2 0.00011 31.6 5.6 48 130-177 17-68 (181)
66 3mtj_A Homoserine dehydrogenas 79.4 3.6 0.00012 36.0 6.3 51 13-63 358-410 (444)
67 3ab4_A Aspartokinase; aspartat 71.6 12 0.00043 32.1 7.6 49 129-177 264-316 (421)
68 2j0w_A Lysine-sensitive aspart 70.3 4.7 0.00016 35.3 4.6 107 13-161 307-419 (449)
69 1rwu_A Hypothetical UPF0250 pr 67.9 28 0.00095 24.3 8.4 64 11-82 33-99 (109)
70 1tdj_A Biosynthetic threonine 64.8 47 0.0016 29.5 10.0 138 15-175 339-481 (514)
71 3mah_A Aspartokinase; aspartat 59.8 8.2 0.00028 28.3 3.6 45 129-177 18-65 (157)
72 1zhv_A Hypothetical protein AT 54.5 14 0.0005 26.7 4.1 33 129-161 62-97 (134)
73 1phz_A Protein (phenylalanine 52.8 18 0.00063 31.4 5.0 49 13-61 33-82 (429)
74 3c1m_A Probable aspartokinase; 47.6 37 0.0013 29.6 6.4 47 129-177 318-367 (473)
75 1zvp_A Hypothetical protein VC 47.2 29 0.001 25.0 4.7 33 129-161 71-106 (133)
76 2qsw_A Methionine import ATP-b 44.2 68 0.0023 21.3 7.1 48 15-63 26-74 (100)
77 3g12_A Putative lactoylglutath 43.9 73 0.0025 21.6 6.9 49 13-69 66-115 (128)
78 2qrr_A Methionine import ATP-b 43.4 71 0.0024 21.3 6.2 38 25-63 37-74 (101)
79 2cdq_A Aspartokinase; aspartat 40.7 41 0.0014 29.8 5.5 46 128-177 340-388 (510)
80 3ced_A Methionine import ATP-b 37.2 91 0.0031 20.8 8.2 48 15-63 23-71 (98)
81 3dhx_A Methionine import ATP-b 35.1 1E+02 0.0035 20.8 7.2 48 15-63 24-72 (106)
82 2w7v_A General secretion pathw 35.1 1E+02 0.0035 20.8 6.0 52 9-62 35-86 (95)
83 4esb_A Transcriptional regulat 34.9 54 0.0018 22.6 4.4 65 139-204 41-108 (115)
84 3tvi_A Aspartokinase; structur 34.2 34 0.0012 29.8 3.9 45 129-177 298-345 (446)
85 1zhv_A Hypothetical protein AT 34.1 38 0.0013 24.4 3.6 38 13-52 61-101 (134)
86 2h9z_A Hypothetical protein HP 33.6 29 0.00099 22.9 2.6 65 11-83 12-77 (86)
87 1zvp_A Hypothetical protein VC 32.3 1.4E+02 0.0047 21.4 6.7 40 11-52 68-110 (133)
88 2yh5_A DAPX protein, BAMC; lip 29.2 83 0.0028 22.3 4.7 69 129-202 50-121 (127)
89 1t4a_A PURS; tetramer, complex 25.8 1.4E+02 0.0047 19.3 6.7 53 144-205 20-73 (84)
90 3ced_A Methionine import ATP-b 22.7 1.7E+02 0.0059 19.3 9.0 39 140-179 34-72 (98)
No 1
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=99.82 E-value=1.3e-19 Score=144.70 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=109.8
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCC
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE 92 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~ 92 (208)
..++|+|+|+|||||++.|+++|+++|+||.++++++..+++.-.|.+... +. ..+.+++.|++.|...+.+
T Consensus 4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~--~~--~~~~~~~~l~~~L~~~~~~---- 75 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN--AK--DGKLIQSALESALPGFQIS---- 75 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SS--SSHHHHHHHHHHSTTCEEE----
T ss_pred eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec--Cc--cchhHHHHHHHHHHHHHHh----
Confidence 457999999999999999999999999999999999988877557777654 22 1223456666665543321
Q ss_pred chhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEE
Q 028501 93 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAK 170 (208)
Q Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~ 170 (208)
.. + ...... .+ .......++|+|.|+||||+++.|+++|+++|+||..++..+.+ ++..
T Consensus 76 ~~--~------~~~~~~-------~~----~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~ 136 (195)
T 2nyi_A 76 TR--R------ASSVAE-------RH----VSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGF 136 (195)
T ss_dssp EE--E------CCCC---------------CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTC
T ss_pred cC--C------eEEEEe-------CC----cCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCC
Confidence 00 0 000000 01 11223479999999999999999999999999999999999987 5567
Q ss_pred EEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 028501 171 DKFHVSY-GGAALNSSLSQVLVNCLRYYL 198 (208)
Q Consensus 171 ~~f~v~~-~g~~~~~~~~~~l~~~l~~~l 198 (208)
+.|++.- -+.+ .... +.|+++|....
T Consensus 137 ~~F~m~~~~~~~-~~~~-~~l~~~l~~~a 163 (195)
T 2nyi_A 137 TLFRMGSRVAFP-FPLY-QEVVTALSRVE 163 (195)
T ss_dssp EEEEEEEEEEEE-GGGH-HHHHHHHHHHH
T ss_pred CeEEEEEEEEcC-CCcc-HHHHHHHHHHH
Confidence 8888875 2222 1223 56666665443
No 2
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=99.79 E-value=2.6e-18 Score=136.48 Aligned_cols=154 Identities=14% Similarity=0.175 Sum_probs=107.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCc
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES 93 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~ 93 (208)
..+|+|+|+||||++++++++|+++|+||.++++++..+.+.-.|.+..+ ....+.|++.|.+..... ..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~~~~~~--~~ 75 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLLGQQH--DL 75 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHHHHHH--TC
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--------CCCHHHHHHHHHHHHHhc--CC
Confidence 47899999999999999999999999999999999988887667777543 135678888887754321 00
Q ss_pred hhhhhccccccCCCCCcccCCccccEEEEecCC-CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC----e
Q 028501 94 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDG-PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL----V 168 (208)
Q Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~----~ 168 (208)
... ..+..+ ++ +.. ...++|+|.|+||||++++|+++|+++|+||.+++..|.+. +
T Consensus 76 ~~~------~~~~~~--------~~-----~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~ 136 (192)
T 1u8s_A 76 ITM------MKRTSP--------HD-----HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHS 136 (192)
T ss_dssp EEE------EEEECC--------CC-----CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC------
T ss_pred EEE------EEeCCC--------CC-----CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCC
Confidence 000 110100 01 122 34789999999999999999999999999999999999874 5
Q ss_pred EEEEEEEEe-CCCCCChHHHHHHHHHHHHH
Q 028501 169 AKDKFHVSY-GGAALNSSLSQVLVNCLRYY 197 (208)
Q Consensus 169 ~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~ 197 (208)
..+.|+++- -+.+ .....+.|+++|...
T Consensus 137 ~~~~F~~~~~~~~~-~~~~~~~l~~~l~~~ 165 (192)
T 1u8s_A 137 EQNQFHIAISARVD-SGCNLMQLQEEFDAL 165 (192)
T ss_dssp --CEEEEEEEEEEC-TTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEEEeCC-CCCCHHHHHHHHHHH
Confidence 678888874 2211 111235555555543
No 3
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=99.20 E-value=7.9e-10 Score=96.82 Aligned_cols=138 Identities=8% Similarity=0.044 Sum_probs=93.1
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCC
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE 92 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~ 92 (208)
...+|+|.|+||||+++.|++.|+++|+||.+.+.+..++.|.-...+..+. .. ...+.|++.|.. +...
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~-~~-----~~~~~l~~~l~~-~~~~--- 80 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPA-DV-----ADGPALRHDVEA-AIRK--- 80 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECH-HH-----HTSHHHHHHHHH-HHHH---
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecC-Cc-----CCHHHHHHHHHH-HHHH---
Confidence 4578999999999999999999999999999999999888765444443221 10 012567777765 3220
Q ss_pred chhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecC-cchHHHHHHHHHHhCCccEEEEEEEecCCeEEE
Q 028501 93 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 171 (208)
Q Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~D-r~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~ 171 (208)
...... ......+ ++ .....++.+.+.|.| ++|++.+|+.+|+++|+||..++..+......-
T Consensus 81 ~~~~~~----~~~~~~~--------~~----~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~ 144 (415)
T 3p96_A 81 VGLDVS----IERSDDV--------PI----IREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGL 144 (415)
T ss_dssp TTCEEE----EEECSSS--------CS----SCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEE
T ss_pred cCeEEE----EEECCcc--------cc----cCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEE
Confidence 111110 0100000 00 112347899999999 999999999999999999999988774333433
Q ss_pred EEEEE
Q 028501 172 KFHVS 176 (208)
Q Consensus 172 ~f~v~ 176 (208)
.|++.
T Consensus 145 ~~~v~ 149 (415)
T 3p96_A 145 ELRVS 149 (415)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 46664
No 4
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=98.83 E-value=3e-07 Score=68.99 Aligned_cols=112 Identities=12% Similarity=0.175 Sum_probs=76.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCch
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESS 94 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~ 94 (208)
..++|..+|+||.++++++.|++.|+||..-.+....+.-.-.|.+ . ++ ++.++.|++ . + .
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~--~-------d~---~~a~~~L~~-~-G--~--- 67 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV--S-------DP---DKAYKALKD-N-H--F--- 67 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE--S-------CH---HHHHHHHHH-T-T--C---
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEe--C-------CH---HHHHHHHHH-c-C--C---
Confidence 5788999999999999999999999999987776544422212332 2 12 233344443 1 1 0
Q ss_pred hhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEE
Q 028501 95 EQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFH 174 (208)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~ 174 (208)
. +. ...++.+..+|+||.+++++++|++.|+||.++.+...+.+...+|.
T Consensus 68 -----------~-------------v~------~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~ 117 (144)
T 2f06_A 68 -----------A-------------VN------ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIR 117 (144)
T ss_dssp -----------C-------------EE------EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred -----------e-------------Ee------eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEE
Confidence 0 00 01357777899999999999999999999988776533455555555
Q ss_pred E
Q 028501 175 V 175 (208)
Q Consensus 175 v 175 (208)
+
T Consensus 118 ~ 118 (144)
T 2f06_A 118 P 118 (144)
T ss_dssp E
T ss_pred e
Confidence 4
No 5
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.52 E-value=1.1e-06 Score=60.56 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=42.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
.+.+.+.|.||||+|++|+.+|+++|+||.++...+..+.....+.+.
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~ 52 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS 52 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEE
Confidence 578999999999999999999999999999999988776666666664
No 6
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=98.48 E-value=1.2e-06 Score=60.28 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=50.8
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
....|+|.++||||++++|+++|+++|+||.+....+..+.+.-.+.+.-+ +. ..++.|.+.|.+
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~-----~~l~~l~~~L~~ 68 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EK-----QDFTYLRNEFEA 68 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SC-----CCHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CC-----CCHHHHHHHHHH
Confidence 346899999999999999999999999999999998887666555656433 21 234677777766
No 7
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=98.48 E-value=2.2e-07 Score=73.49 Aligned_cols=71 Identities=11% Similarity=-0.024 Sum_probs=54.1
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
...+.|+|.|+||||+++.|+++|+++|+||.+++.+|.+ +...+.|++.... +.+ ++.. +.|++.|....
T Consensus 91 ~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~-~~~--~~~~-~~l~~~l~~~a 163 (195)
T 2nyi_A 91 TREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRV-AFP--FPLY-QEVVTALSRVE 163 (195)
T ss_dssp EEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEE-EEE--GGGH-HHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEE-EcC--CCcc-HHHHHHHHHHH
Confidence 3567999999999999999999999999999999999987 4445667666543 222 1234 77777777643
No 8
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=98.39 E-value=2.2e-06 Score=67.36 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=52.2
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL 198 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l 198 (208)
.++|.|.|+||||+++.|+.+|+++|+||..+++.+..+.....|.+.... ...+.|+++|..++
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-----~~~~~l~~~L~~~~ 70 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-----SNITRVETTLPLLG 70 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-----HHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-----CCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999998888877777776431 23456666655433
No 9
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.26 E-value=9.3e-06 Score=55.13 Aligned_cols=48 Identities=10% Similarity=0.213 Sum_probs=40.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
.+.+.+.+.||||+|++|+++|++.|+||.++.+.+.++.+...|.+.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~ 52 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF 52 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEE
Confidence 478999999999999999999999999999999988666444455553
No 10
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=98.12 E-value=2e-05 Score=53.45 Aligned_cols=48 Identities=8% Similarity=0.138 Sum_probs=39.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEe
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 61 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~ 61 (208)
.+.|.|.++||||+|++|+++|++.|+||.+..+.+.++.+...|.+.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~ 52 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF 52 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEE
Confidence 357889999999999999999999999999999988766444445444
No 11
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=97.99 E-value=0.00022 Score=54.70 Aligned_cols=111 Identities=13% Similarity=0.167 Sum_probs=73.6
Q ss_pred CCeEEEEEEe-CCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501 12 SDATIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 89 (208)
Q Consensus 12 ~~~~~v~v~~-~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 89 (208)
++...|+|.+ +|+||.++++++.|+++|++|..-......++ ..-.|+|...+ .++..+.|++ +..
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~----------~~~a~~~l~~-~~~- 90 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGD----------YKQTLEILSE-RQD- 90 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGG----------HHHHHHHHHH-SST-
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechH----------HHHHHHHHHH-HHH-
Confidence 4668899994 99999999999999999999995544332222 23346664321 1333344444 211
Q ss_pred CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecC---cchHHHHHHHHHHhCCccEEEEE
Q 028501 90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD---RPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~D---r~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
+. + + ..|.+. .+...+.|.|.+ +||+++.+..+|++.|+||....
T Consensus 91 --~l----------~---------~---~~i~~~---~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 91 --SI----------G---------A---ASIDGD---DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp --TT----------T---------C---SEEEEE---SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred --Hc----------C---------C---ceEEec---CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 00 0 0 113332 245789999987 99999999999999999999854
No 12
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=97.83 E-value=8.5e-05 Score=62.54 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=47.3
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec--CCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~--~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
....|+|.|+||||+++.|++.|+++|+||.+++.++. .+.|+-...+..+ +... ..+.|++.|..
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~--~~~~----~~~~L~~~l~~ 88 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD--TLPF----DLDGFREAFTP 88 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG--GSSS----CHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC--CCCC----CHHHHHHHHHH
Confidence 44689999999999999999999999999999999976 3445323333222 1111 24667777655
No 13
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=97.82 E-value=0.00047 Score=52.73 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=72.3
Q ss_pred CCCeEEEEEEe-CCcccHHHHHHHHHHHCCceEEEEEEEecC--C-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 11 NSDATIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEG--S-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 11 ~~~~~~v~v~~-~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
.++...|+|.+ +|+||.++++.++|++.|++|.--...... . ..--.|.|...+ . ++..+.|.+..
T Consensus 13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d-------~---~~a~~~L~~~~ 82 (167)
T 2dt9_A 13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDF-------A---QEALEALEPVL 82 (167)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGG-------H---HHHHHHHHHHH
T ss_pred eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHH-------H---HHHHHHHHHHH
Confidence 45678888886 899999999999999999999854332221 1 222346665332 1 22233343311
Q ss_pred ccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEecC---cchHHHHHHHHHHhCCccEEEEE
Q 028501 87 LKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD---RPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~D---r~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
.. + .+ .|.++. +...+.|.|.+ +||+++.+.++|++.|+||....
T Consensus 83 ~~--------~---------------~~----~v~~~~---~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 83 AE--------I---------------GG----EAILRP---DIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp HH--------H---------------CC----EEEEEC---SEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred HH--------h---------------CC----cEEEeC---CEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 10 0 01 133322 34788888886 99999999999999999995553
No 14
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=97.76 E-value=0.00013 Score=60.93 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=46.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
...|+|.|+||||+++.|++.|+++|+||.+.+.++.. +.|+-...+..+ .... ..+.|++.|..
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~~~~----~~~~L~~~f~~ 72 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA--AKVI----PLASLRTGFGV 72 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEES--SCCC----CHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcC--CCCC----CHHHHHHHHHH
Confidence 46899999999999999999999999999999998543 344333333323 2111 24667777665
No 15
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=97.74 E-value=0.00019 Score=60.13 Aligned_cols=37 Identities=8% Similarity=0.189 Sum_probs=34.7
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 164 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t 164 (208)
..+++++.|+||||+++.||++|+++|+||.++...+
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~ 45 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFD 45 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEe
Confidence 3589999999999999999999999999999999885
No 16
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=97.73 E-value=0.00016 Score=60.49 Aligned_cols=65 Identities=11% Similarity=-0.024 Sum_probs=46.8
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--CeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
....|+|.|+||||+++.+++.|+++|+||.+.+.++.. +.|.-...+..+ + .. ..+.|++.|..
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~-~~----~~~~L~~~f~~ 73 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP--D-DF----DEAGFRAGLAE 73 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC--S-SC----CHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC--C-CC----CHHHHHHHHHH
Confidence 346899999999999999999999999999999998643 344322223222 2 11 24677777765
No 17
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=97.73 E-value=0.00029 Score=59.25 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=35.9
Q ss_pred CCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 127 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 127 ~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
...+++++.|+||||+++.||.+|+++|+||..+...+.
T Consensus 20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d 58 (302)
T 3o1l_A 20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD 58 (302)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec
Confidence 356899999999999999999999999999999998865
No 18
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=97.72 E-value=0.0004 Score=53.82 Aligned_cols=112 Identities=20% Similarity=0.262 Sum_probs=73.0
Q ss_pred CCCeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecC--C-eeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 11 NSDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG--S-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 11 ~~~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~-~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
.++.+.|+|. .+|+||.++++++.|++.|++|.--..++.. + ..--.|.+... ..++..+.|++ +
T Consensus 12 ~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~----------d~~~a~~~l~~-~ 80 (178)
T 2dtj_A 12 DKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS----------DGRRAMEILKK-L 80 (178)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH----------HHHHHHHHHHT-T
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc----------cHHHHHHHHHH-H
Confidence 3467788884 6999999999999999999999855444331 2 22112655432 12333344433 2
Q ss_pred ccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501 87 LKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
.. +. + + ..|.+.. +...|.|.|. ++||+++.+.++|++.|+||....
T Consensus 81 ~~---~~----------~---------~---~~v~~~~---~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is 130 (178)
T 2dtj_A 81 QV---QG----------N---------W---TNVLYDD---QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS 130 (178)
T ss_dssp TT---TT----------T---------C---SEEEEES---CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HH---hc----------C---------C---CeEEEeC---CeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence 11 00 0 0 1233332 3477888887 899999999999999999998864
No 19
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=97.70 E-value=0.00017 Score=60.33 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=35.5
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501 12 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 50 (208)
Q Consensus 12 ~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~ 50 (208)
.....|++.|+||||+++.|++.|+++|+||.+.+.++.
T Consensus 5 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d 43 (287)
T 3nrb_A 5 NNQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFND 43 (287)
T ss_dssp TTEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeec
Confidence 345789999999999999999999999999999999854
No 20
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=97.70 E-value=0.00022 Score=59.60 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=34.5
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 164 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t 164 (208)
..+++++.|+||||+++.||.+|+++|+||......+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~ 42 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFN 42 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeee
Confidence 4589999999999999999999999999999999864
No 21
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=97.69 E-value=0.00017 Score=60.42 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=35.1
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEec
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 50 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~ 50 (208)
....|++.|+||||+++.|++.|+++|+||.+.+.++.
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d 46 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD 46 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEec
Confidence 45789999999999999999999999999999999863
No 22
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=97.65 E-value=0.00048 Score=57.54 Aligned_cols=36 Identities=14% Similarity=0.296 Sum_probs=33.8
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 164 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t 164 (208)
.+++++.|+||||+++.||.+|+++|+||..++..+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~ 41 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYN 41 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeee
Confidence 478999999999999999999999999999999864
No 23
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=97.64 E-value=0.00012 Score=63.76 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=43.3
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
..++|+|.|+||||+++.|+.+|+++|+||..+.....++.......++
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~ 59 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVC 59 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEE
Confidence 4689999999999999999999999999999999998888766655554
No 24
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=97.64 E-value=0.00043 Score=57.79 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=34.5
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
.+++++.|+||||+++.||.+|+++|+||.+.+..+.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d 44 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDD 44 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeecc
Confidence 4889999999999999999999999999999998853
No 25
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=97.63 E-value=0.00022 Score=54.78 Aligned_cols=64 Identities=13% Similarity=0.255 Sum_probs=49.1
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC--eEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--VAKDKFHVSYGGAALNSSLSQVLVNCLRYY 197 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~--~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~ 197 (208)
...++|.+.|+||+|++|+..|++.|+||.++.+.+..+ ...-.|.++ |. +...++|.+.|...
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~d---~~~leqI~kqL~Kl 68 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--GD---EKVLEQIEKQLHKL 68 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--SC---HHHHHHHHHHHHHS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--cc---HHHHHHHHHHHcCC
Confidence 367999999999999999999999999999999976543 344456665 22 44567777777643
No 26
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=97.58 E-value=0.00041 Score=53.32 Aligned_cols=64 Identities=9% Similarity=0.197 Sum_probs=49.4
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEEEEEEEEeCCCCCChHHHHHHHHHHHHH
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 197 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~ 197 (208)
...++|...|+||+|++|+..|++.|+||.++.+.+.. +...-.|.++++ +...++|.+.|...
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d-----~~~leql~kQL~Kl 69 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP-----DEIVEQITKQLNKL 69 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC-----HHHHHHHHHHHHHS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc-----HHHHHHHHHHhcCC
Confidence 46799999999999999999999999999999997654 334455666532 44567777777654
No 27
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=97.42 E-value=0.0048 Score=47.84 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=70.7
Q ss_pred CCeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecC--Ce-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhc
Q 028501 12 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL 87 (208)
Q Consensus 12 ~~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~ 87 (208)
++.+.|+|. .+|+||.+++|.+.|++.|++|.--...... .+ .--+|.|...+ .++..+.|++ +.
T Consensus 14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~----------~~~a~~~L~~-~~ 82 (181)
T 3s1t_A 14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV----------GPAAVEKLDS-LR 82 (181)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTT----------HHHHHHHHHH-TH
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhH----------HHHHHHHHHH-HH
Confidence 456677775 5899999999999999999999843322222 22 23346665331 1223333333 11
Q ss_pred cCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501 88 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
. .+ . ..+|.++. +...+.+.|. ++||+.+.+.++|++.|+||..+.
T Consensus 83 ~-------el------~------------~~~v~~~~---~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 83 N-------EI------G------------FSQLLYDD---HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp H-------HH------C------------CSEEEEES---CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred H-------hc------C------------cceEEEeC---CEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 1 00 0 01133333 3467777766 899999999999999999998887
No 28
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=97.25 E-value=0.001 Score=51.07 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=48.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-e-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-V-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
..|.|.+.|+||+|++++++|++.|+||.+..+....+ + ..-+|.+. . . ...++++.+.|.+
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~---d----~~~leqI~kqL~K 67 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G---D----EKVLEQIEKQLHK 67 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S---C----HHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c---c----HHHHHHHHHHHcC
Confidence 57899999999999999999999999999999987664 3 33345554 2 2 3567888888776
No 29
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=97.17 E-value=0.0014 Score=50.32 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=48.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-e-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-V-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
..+.|...|+||.|++++++|++.|+||.+..+..+.+ + ..-+|.+. . . +..++++.+.|.+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~---d----~~~leql~kQL~K 68 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-G---P----DEIVEQITKQLNK 68 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-E---C----HHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-c---c----HHHHHHHHHHhcC
Confidence 47889999999999999999999999999999986654 3 33345554 2 1 3566777777776
No 30
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.14 E-value=0.0023 Score=48.48 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=32.9
Q ss_pred EEEEEecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 131 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 131 ~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
.|+|.|.||+|+|++|+++|+++++||..+.+.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 48899999999999999999999999999999765
No 31
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=97.14 E-value=0.0013 Score=51.54 Aligned_cols=63 Identities=10% Similarity=0.174 Sum_probs=47.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC--eEEEEEEEEeCCCCCChHHHHHHHHHHHH
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--VAKDKFHVSYGGAALNSSLSQVLVNCLRY 196 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~--~~~~~f~v~~~g~~~~~~~~~~l~~~l~~ 196 (208)
...|+|...|+||.|++|+..|+..|+||.++.+....+ ...-++.+++. +...++|.+.|..
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-----e~~ieqL~kQL~K 93 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-----DKTIEQIEKQAYK 93 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-----TTHHHHHHHHHTT
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-----HHHHHHHHHHhcC
Confidence 578999999999999999999999999999999875443 23345566433 3345677766664
No 32
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=97.14 E-value=0.001 Score=53.17 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=31.3
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
...|.+.+.||||+|++|+++|+++++||.+++..+..
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 47899999999999999999999999999999998854
No 33
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=97.10 E-value=0.0048 Score=48.76 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=69.1
Q ss_pred CCCeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEec--CCee-EEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhh
Q 028501 11 NSDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNL 86 (208)
Q Consensus 11 ~~~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~--~~~~-~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l 86 (208)
.++...|+|. .+|+||+.++|.+.|++.|+||.--..... .+.. .-+|.+...+ .++....|.+..
T Consensus 32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d----------~~~~~~~l~~~~ 101 (200)
T 4go7_X 32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV----------GPAAVEKLDSLR 101 (200)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG----------HHHHHHHHHTTH
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh----------HHHHHHHHHHHH
Confidence 3466788887 499999999999999999999984322221 1223 3346664321 122222332211
Q ss_pred ccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEE
Q 028501 87 LKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
. .+ . ..+|.++.+ ...+.+.| ..+||+.+.+.++|++.|+||.-..
T Consensus 102 ~--------~~------~------------~~~v~~~~~---iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs 150 (200)
T 4go7_X 102 N--------EI------G------------FSQLLYDDH---IGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 150 (200)
T ss_dssp H--------HH------C------------CSEEEEECC---EEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred h--------hh------c------------eeeEEEecC---eeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE
Confidence 0 00 0 011333333 24455544 5899999999999999999998886
No 34
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=96.94 E-value=0.023 Score=49.59 Aligned_cols=110 Identities=21% Similarity=0.272 Sum_probs=71.6
Q ss_pred CeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecC--Ce-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501 13 DATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 88 (208)
Q Consensus 13 ~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~ 88 (208)
+.+.|+|. .+|+||.++++.+.|+++|++|.--...+.. .+ ..-.|.|...+ . ++..+.|++ +..
T Consensus 263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~-------~---~~a~~~l~~-~~~ 331 (421)
T 3ab4_A 263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSD-------G---RRAMEILKK-LQV 331 (421)
T ss_dssp SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTT-------H---HHHHHHHHH-HHT
T ss_pred CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechh-------H---HHHHHHHHH-HHH
Confidence 55678888 5899999999999999999999855443332 22 23346665321 1 222334444 211
Q ss_pred CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501 89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
+. + + ..|.+.. +...+.|.|. ++||+++.+..+|++.|+||....
T Consensus 332 ---~~----------~---------~---~~v~~~~---~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 379 (421)
T 3ab4_A 332 ---QG----------N---------W---TNVLYDD---QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS 379 (421)
T ss_dssp ---TT----------T---------C---SEEEEEC---CEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE
T ss_pred ---Hc----------C---------C---ceEEEeC---CeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence 00 0 0 1233332 3467888886 799999999999999999998554
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=96.77 E-value=0.0077 Score=47.22 Aligned_cols=63 Identities=14% Similarity=0.222 Sum_probs=46.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC-ee-EEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~-~~-~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
...|+|...|+||.|++|+++|+..|+||.+-.+..+.+ +. .-++.|...+ ..+++|.+.|.+
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e--------~~ieqL~kQL~K 93 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD--------KTIEQIEKQAYK 93 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT--------THHHHHHHHHTT
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCH--------HHHHHHHHHhcC
Confidence 357999999999999999999999999999888875544 33 2344554221 345666666655
No 36
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=96.64 E-value=0.012 Score=44.48 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=43.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 16 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 16 ~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
.|.|.|.||+|++++|+.+|+..++||....+.+. +. +++.-+. .+.+.+..+...+..
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~--g~---i~~~~~~-----~~~~~~~~L~~~l~~ 60 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI--GR---IYLNFAE-----LEFESFSSLMAEIRR 60 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT--TE---EEEEECC-----CCHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC--CE---EEEEEEe-----CCHHHHHHHHHHHHc
Confidence 57899999999999999999999999999998666 22 3333321 123556666666665
No 37
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=96.43 E-value=0.011 Score=49.21 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=47.0
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEEEeCCCCCChHH
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAALNSSL 186 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v~~~g~~~~~~~ 186 (208)
.+.|-+..+|+||-|+++...|+.+|+|+.++..-..+++.+ -.|+|+-+|+.-++..
T Consensus 200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~~d~~v 258 (283)
T 2qmx_A 200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHREDQNV 258 (283)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCTTSHHH
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCCCcHHH
Confidence 466777778999999999999999999999999998877644 4788876887633333
No 38
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=96.36 E-value=0.038 Score=46.86 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=46.6
Q ss_pred EEEEEEec--CcchHHHHHHHHHHhCCccEEEEEEEecCCeEEE-EEEEEeCCCCCChHHHHHH
Q 028501 130 SLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD-KFHVSYGGAALNSSLSQVL 190 (208)
Q Consensus 130 ~~i~v~~~--Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~-~f~v~~~g~~~~~~~~~~l 190 (208)
+.+-+... |+||-|+++...|+.+|||+.++..-...++... .|+|+-+|+.-+...++.|
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~AL 270 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPWEERFRDAL 270 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTTSHHHHHHH
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcCCHHHHHHH
Confidence 44444443 7999999999999999999999999998888666 6888768877444444444
No 39
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=96.23 E-value=0.016 Score=42.69 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=33.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL 167 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~ 167 (208)
...++|..+|+||.|++|+..|++.|+||....+....+
T Consensus 6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 367888999999999999999999999999998764333
No 40
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=96.20 E-value=0.011 Score=47.24 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=31.3
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 51 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~ 51 (208)
...|.|.+.||||+|++|+++|++++.||...+..+..
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 35789999999999999999999999999999999876
No 41
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=96.02 E-value=0.017 Score=48.68 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=48.9
Q ss_pred CeEEEEEEec-CcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEEEeCCCCCChHHHHHH
Q 028501 128 KRSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAALNSSLSQVL 190 (208)
Q Consensus 128 ~~~~i~v~~~-Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v~~~g~~~~~~~~~~l 190 (208)
..+.|-+..+ |+||-|+++...|+.+|||+.++..-...+... =.|+|+-+|+.-++..++.|
T Consensus 200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~d~~v~~aL 264 (313)
T 3mwb_A 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADAL 264 (313)
T ss_dssp EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCTTSHHHHHHH
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCCCcHHHHHHH
Confidence 3677777775 999999999999999999999999988776644 46888767876333343333
No 42
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=95.99 E-value=0.11 Score=45.98 Aligned_cols=113 Identities=10% Similarity=0.151 Sum_probs=71.1
Q ss_pred CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501 13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 89 (208)
Q Consensus 13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 89 (208)
+...|+|.+ .++||+++++..+|+++|++|.--...+.... -+|.|...+ .++..+.|.+.+..
T Consensus 317 ~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse~~--Is~~V~~~d----------~~~a~~~L~~~l~~- 383 (473)
T 3c1m_A 317 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETN--ISLVVSEED----------VDKALKALKREFGD- 383 (473)
T ss_dssp EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCC--EEEEEEGGG----------HHHHHHHHHHHHCC-
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCCCE--EEEEEechH----------HHHHHHHHHHHHhh-
Confidence 567888886 67899999999999999999985544333322 246665331 23344445444411
Q ss_pred CCCchhhhhccccccCCCCCcccCCcc---ccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEE
Q 028501 90 HPESSEQLAMGEAFGIKAPEKKLDVDI---ATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESA 160 (208)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a 160 (208)
. .+. .|.. -..|.+.. +...+.|.|. ++||+++.+.++|++.|+||...
T Consensus 384 ---~----------~~~------~~~~~~~~~~v~~~~---~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~mi 438 (473)
T 3c1m_A 384 ---F----------GKK------SFLNNNLIRDVSVDK---DVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMI 438 (473)
T ss_dssp -----------------------CTTSCCCEEEEEEEE---EEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEE
T ss_pred ---h----------ccc------ccccccccceEEEeC---CcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEE
Confidence 0 000 0110 01233332 3467888886 58999999999999999999444
No 43
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=95.97 E-value=0.022 Score=49.68 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=43.4
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
+...+-+.-.|+||++..|+.+|+++|+||......+.|+.+..++.++.
T Consensus 330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~ 379 (404)
T 1sc6_A 330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA 379 (404)
T ss_dssp SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence 34567788999999999999999999999999999997777777777754
No 44
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=95.56 E-value=0.036 Score=45.59 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=43.2
Q ss_pred eEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEE-EEEEEEeCCCC
Q 028501 129 RSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAA 181 (208)
Q Consensus 129 ~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~-~~f~v~~~g~~ 181 (208)
.+.|-+.. .|+||-|+++...|+.+|+|+.++..-...++.+ -.|+|+-+ +.
T Consensus 186 ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~~ 241 (267)
T 2qmw_A 186 ATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-SA 241 (267)
T ss_dssp CSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-CC
T ss_pred eEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-cC
Confidence 46666666 8999999999999999999999999998877644 47888767 54
No 45
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=95.48 E-value=0.12 Score=45.48 Aligned_cols=109 Identities=12% Similarity=0.174 Sum_probs=70.2
Q ss_pred CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501 13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 89 (208)
Q Consensus 13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 89 (208)
+.+.|+|.+ ++.||.+++|...|+++|++|.- |.+....+ +|.|...+ -. .....+.+.|...+.
T Consensus 297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~--i~~~~~~i--s~~V~~~d-~~-----~~~~~~~~el~~~~~-- 364 (446)
T 3tvi_A 297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEH--MPSGVDSV--SLVIEDCK-LD-----GKCDKIIEEIKKQCN-- 364 (446)
T ss_dssp EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEE--BCEETTEE--EEEEEHHH-HT-----TTHHHHHHHHHHHSC--
T ss_pred CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEE--EecCCCEE--EEEEecch-HH-----HHHHHHHHHHHHhcC--
Confidence 456788886 68999999999999999999983 33322222 36665431 10 012333333333221
Q ss_pred CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEE
Q 028501 90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEID 163 (208)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~ 163 (208)
+.+|.+.. +...|.|.|. .+||+.+.+.++|++.|+||..+.-.
T Consensus 365 ---------------------------~~~v~v~~---~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqg 411 (446)
T 3tvi_A 365 ---------------------------PDSIEIHP---NMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQG 411 (446)
T ss_dssp ---------------------------CSEEEEEE---EEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---------------------------CCcEEEeC---CeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEec
Confidence 01133322 2367888876 58999999999999999999877643
No 46
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=95.29 E-value=0.13 Score=46.30 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=46.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecC--CeEEEEEEEEeCCCCCChHHHHHHHH
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVN 192 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~--~~~~~~f~v~~~g~~~~~~~~~~l~~ 192 (208)
.++.+.+.-.|+||.+..|+..|.++|+||.++++.... +.+..++.++ .+++++..++|++
T Consensus 453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd---~~~~~~~l~~l~~ 516 (529)
T 1ygy_A 453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLD---QDVPDDVRTAIAA 516 (529)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEES---SCCCHHHHHHHHH
T ss_pred CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEEC---CCCCHHHHHHHhc
Confidence 467888899999999999999999999999999998754 3354455552 2345666666653
No 47
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=95.20 E-value=0.41 Score=43.67 Aligned_cols=111 Identities=16% Similarity=0.196 Sum_probs=72.7
Q ss_pred CCeEEEEEE-eCCcccHHHHHHHHHHHCCceEEEEEEEecC---Ce--e-EEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 12 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG---SV--K-QTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 12 ~~~~~v~v~-~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~---~~--~-~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
++...|+|. .+|+||+.++|.+.|++.|++|.--..+... ++ . --+|.+... .+++..+.|++
T Consensus 442 ~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~----------d~~~a~~~l~~ 511 (600)
T 3l76_A 442 QDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEG----------DSSQAEAILQP 511 (600)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHH----------HHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHH----------HHHHHHHHHHH
Confidence 466778776 5999999999999999999999633333222 12 1 223655432 23444444444
Q ss_pred hhccCCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEE
Q 028501 85 NLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 85 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
+.. .. + +.+|.++. +...|.+.| ..+||+.+.+.++|++.||||....
T Consensus 512 -~~~---~~----------~------------~~~v~~~~---~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis 562 (600)
T 3l76_A 512 -LIK---DW----------L------------DAAIVVNK---AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA 562 (600)
T ss_dssp -HTT---TS----------T------------TCEEEEEC---CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred -HHH---hc----------C------------CceEEEeC---CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence 211 00 0 11234333 347788887 4899999999999999999998777
No 48
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=94.99 E-value=1.7 Score=39.66 Aligned_cols=136 Identities=17% Similarity=0.263 Sum_probs=80.6
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 028501 12 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK 88 (208)
Q Consensus 12 ~~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~ 88 (208)
++...|.|.+. .+||..+++..+|.+.|+||.... +. +. --.|.|...+ .++..+.|.+.+..
T Consensus 353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~-~Is~vI~~~d----------~~~Av~aLh~~f~~ 418 (600)
T 3l76_A 353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EV-KVSCVIDQRD----------ADRAIAALSNAFGV 418 (600)
T ss_dssp CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SS-EEEEEEEGGG----------HHHHHHHHHHHTTC
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CC-EEEEEEcHHH----------HHHHHHHHHHhhcc
Confidence 46678999975 799999999999999999998443 33 22 2236565332 23344455555532
Q ss_pred CCCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEE-ecCcchHHHHHHHHHHhCCccEEEEEEEecC-
Q 028501 89 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEIDTEG- 166 (208)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~-~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~- 166 (208)
... + . ..+.....-+.-+-|..+.+ .+.|.+. .+|+||+.++|...|++.|+||.-...+...
T Consensus 419 ~~t--~-~---------~~~~~~~~~~~v~Gia~~~~---~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~ 483 (600)
T 3l76_A 419 TLS--P-P---------KNQTDTSHLPAVRGVALDQD---QAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCR 483 (600)
T ss_dssp CBC--C-C---------CCCCC---CCSCCEEEEECS---EEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred cCC--C-c---------cccccccccCceEEEEeeCC---EEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 100 0 0 00000000111123444433 3556664 5899999999999999999999766655422
Q ss_pred ---C--eEEEEEEEE
Q 028501 167 ---L--VAKDKFHVS 176 (208)
Q Consensus 167 ---~--~~~~~f~v~ 176 (208)
+ ...-.|.+.
T Consensus 484 ~~~g~~~~~isftv~ 498 (600)
T 3l76_A 484 INQGTPCRDIAFMVA 498 (600)
T ss_dssp CSSSSCEEEEEEEEE
T ss_pred ccCCCccceEEEEEe
Confidence 2 234457774
No 49
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=94.05 E-value=0.39 Score=43.02 Aligned_cols=122 Identities=14% Similarity=0.203 Sum_probs=73.3
Q ss_pred CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501 13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 89 (208)
Q Consensus 13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 89 (208)
+.+.|+|.+ .++||++++|..+|+++|++|.-- .+....+ +|.|...+ ...... ..+.++..+.+ +..
T Consensus 340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I--~sse~si--s~~v~~~~-~~~~~~--~~~~l~~~~~e-l~~- 410 (510)
T 2cdq_A 340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV--ATSEVSI--SLTLDPSK-LWSREL--IQQELDHVVEE-LEK- 410 (510)
T ss_dssp EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE--EEETTEE--EEEECCGG-GSSSCC--CHHHHHHHHHH-HTT-
T ss_pred CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEE--EeCCCeE--EEEEechH-hhhhhH--HHHHHHHHHHH-hCC-
Confidence 557888885 679999999999999999999944 4433333 36665331 111000 01122221111 211
Q ss_pred CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec--CcchHHHHHHHHHHhCCccEEEEEEEecCC
Q 028501 90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGL 167 (208)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~--Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~ 167 (208)
+ .+|.+.. +...|.+.|. .+||+.+.+..+|++.|+||..+.- |.
T Consensus 411 ------------------------~---~~v~~~~---~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsq---Gs 457 (510)
T 2cdq_A 411 ------------------------I---AVVNLLK---GRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQ---GA 457 (510)
T ss_dssp ------------------------T---SEEEEEE---EEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEE---CT
T ss_pred ------------------------C---CeEEEeC---CcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEe---cC
Confidence 0 1133322 2356777776 7889999999999999999987743 32
Q ss_pred e-EEEEEEEE
Q 028501 168 V-AKDKFHVS 176 (208)
Q Consensus 168 ~-~~~~f~v~ 176 (208)
. ..-.|.|.
T Consensus 458 Sei~Is~vV~ 467 (510)
T 2cdq_A 458 SKVNISFIVN 467 (510)
T ss_dssp TCSEEEEEEE
T ss_pred CcceEEEEEe
Confidence 2 22346664
No 50
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=93.95 E-value=0.11 Score=38.93 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=66.9
Q ss_pred CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501 13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 89 (208)
Q Consensus 13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 89 (208)
+...|+|.+ ++.||..+++.++|++.|++|. -|.+..... +|++... . . +++.+++ +..
T Consensus 17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd--~I~~s~~~I--sf~v~~~---~------~---~~~il~~-l~~- 78 (157)
T 3mah_A 17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVD--MVATSEVGV--SLTIDND---K------N---LPDIVRA-LSD- 78 (157)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCS--CEECCSSEE--EEEESCC---T------T---HHHHHHH-HTT-
T ss_pred CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEE--EEEecCCEE--EEEECCh---H------H---HHHHHHH-Hhc-
Confidence 567888884 5789999999999999999997 344443322 3666422 1 1 2222222 211
Q ss_pred CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEEEEecC
Q 028501 90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDTEG 166 (208)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~ 166 (208)
+ ..|.+.+ +...+.+.|. ++||+.+.+..+|+ |+||....-.+.
T Consensus 79 ------------------------~---~~v~~~~---~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~S- 125 (157)
T 3mah_A 79 ------------------------I---GDVTVDK---DMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGS- 125 (157)
T ss_dssp ------------------------T---EEEEEEE---EEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSS-
T ss_pred ------------------------c---CeEEEeC---CeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCC-
Confidence 0 1122222 2366777765 68999999999999 898877653322
Q ss_pred CeEEEEEEEE
Q 028501 167 LVAKDKFHVS 176 (208)
Q Consensus 167 ~~~~~~f~v~ 176 (208)
...-.|.+.
T Consensus 126 -e~~is~vv~ 134 (157)
T 3mah_A 126 -NYNVSVLVK 134 (157)
T ss_dssp -SSCEEEEEE
T ss_pred -CCEEEEEEc
Confidence 122345664
No 51
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=92.85 E-value=0.28 Score=43.22 Aligned_cols=37 Identities=27% Similarity=0.539 Sum_probs=32.1
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEe
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT 164 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t 164 (208)
..+-+.+...|+||.|++|+.+|.++|++|.++.-..
T Consensus 358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~ 394 (444)
T 3mtj_A 358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKE 394 (444)
T ss_dssp EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecc
Confidence 4678889999999999999999999999999987653
No 52
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=92.57 E-value=0.46 Score=41.24 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=40.2
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEE
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 60 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v 60 (208)
+...|.+.-.|+||.+..|+.+|.++|+||....+.+.++.++-++-+
T Consensus 330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv 377 (404)
T 1sc6_A 330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI 377 (404)
T ss_dssp SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence 345688889999999999999999999999999999977766544433
No 53
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=92.23 E-value=0.92 Score=40.60 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=35.7
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCC
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 52 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~ 52 (208)
....+.+.-+|+||.+..++..|.++|+||...++.....
T Consensus 453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~ 492 (529)
T 1ygy_A 453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAE 492 (529)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCC
Confidence 4567888899999999999999999999999999988643
No 54
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=91.72 E-value=0.25 Score=43.12 Aligned_cols=68 Identities=12% Similarity=0.229 Sum_probs=49.5
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCe-EEEEEEEEeCCCCCChHHHHHHHHHHHHH
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYY 197 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~-~~~~f~v~~~g~~~~~~~~~~l~~~l~~~ 197 (208)
..+.|-+...|+||-|+++...|+.+|||+.++..-..... ..=.|+|+-+ .. .++..+.+.+.|...
T Consensus 33 dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e-h~-~d~~v~~AL~eL~~~ 101 (429)
T 1phz_A 33 GAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD-KR-TKPVLGSIIKSLRND 101 (429)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC-GG-GHHHHHHHHHHHHHT
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe-eC-CCHHHHHHHHHHHhh
Confidence 45777777789999999999999999999999999887665 4447888656 33 444333333444443
No 55
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=91.56 E-value=0.59 Score=40.75 Aligned_cols=49 Identities=18% Similarity=0.357 Sum_probs=43.8
Q ss_pred CeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEE
Q 028501 128 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 176 (208)
Q Consensus 128 ~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~ 176 (208)
....+.+.-.|.||+|..|+.+|+++|+||......|.++-+..+.-++
T Consensus 342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~ 390 (416)
T 3k5p_A 342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD 390 (416)
T ss_dssp SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence 4678999999999999999999999999999999999888877766664
No 56
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=91.01 E-value=0.67 Score=34.83 Aligned_cols=48 Identities=21% Similarity=0.401 Sum_probs=35.4
Q ss_pred eEEEEEEe-cCcchHHHHHHHHHHhCCccEEEEEEEecCC-eEEEEEEEE
Q 028501 129 RSLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~-~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~-~~~~~f~v~ 176 (208)
.+.|+|.+ .|+||++++|...|+++|+||.....+...+ ...-.|.+.
T Consensus 25 ~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 25 QARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred EEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 37788885 8999999999999999999998887653222 233457664
No 57
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=89.73 E-value=1.3 Score=38.63 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=39.3
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeE
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 55 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~ 55 (208)
+...|.+.-.|.||.+.+|..+|+++|+||..-...|.++.++
T Consensus 342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y 384 (416)
T 3k5p_A 342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGY 384 (416)
T ss_dssp SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEE
T ss_pred CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEE
Confidence 5679999999999999999999999999999888888888774
No 58
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=88.76 E-value=1.4 Score=33.50 Aligned_cols=38 Identities=13% Similarity=0.388 Sum_probs=31.6
Q ss_pred CeEEEEEE-ecCcchHHHHHHHHHHhCCccEEEEEEEec
Q 028501 128 KRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEIDTE 165 (208)
Q Consensus 128 ~~~~i~v~-~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~ 165 (208)
+.+.|+|. ..|+||++++|.+.|++.|+||.....++.
T Consensus 14 ~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~ 52 (178)
T 2dtj_A 14 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVS 52 (178)
T ss_dssp SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred CEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 34677773 589999999999999999999988876654
No 59
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=88.73 E-value=0.63 Score=34.95 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=37.1
Q ss_pred CeEEEEEEe-cCcchHHHHHHHHHHhCCccEEEEEEEec---CCeEEEEEEEEe
Q 028501 128 KRSLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTE---GLVAKDKFHVSY 177 (208)
Q Consensus 128 ~~~~i~v~~-~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~---~~~~~~~f~v~~ 177 (208)
+.+.|++.+ .|+||++++|..+|++.|+||.....+.. .+...-.|.+..
T Consensus 15 ~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~ 68 (167)
T 2dt9_A 15 DHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK 68 (167)
T ss_dssp SEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh
Confidence 346777776 79999999999999999999988765432 123344677753
No 60
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=87.80 E-value=3.6 Score=33.85 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=43.3
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 14 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 14 ~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
.|.|.+..+|+||-|+++.+.|+..|+|...-.-.-..+. .--.|+|.-. |.. .+ ..++++|++
T Consensus 200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e--g~~-~d----~~v~~aL~~ 264 (283)
T 2qmx_A 200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI--GHR-ED----QNVHNALEN 264 (283)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE--SCT-TS----HHHHHHHHH
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe--cCC-Cc----HHHHHHHHH
Confidence 4566666689999999999999999999994444434332 3345888654 653 33 345555555
No 61
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=85.98 E-value=4.5 Score=33.80 Aligned_cols=53 Identities=23% Similarity=0.368 Sum_probs=37.2
Q ss_pred CeEEEEEEeC-CcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCC
Q 028501 13 DATIVQLSFG-DRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR 67 (208)
Q Consensus 13 ~~~~v~v~~~-DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~ 67 (208)
+.|.|.+..+ |+||-|+++.+.|+..|+|...-.-.-..+. .--.|+|.-. |.
T Consensus 200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e--g~ 254 (313)
T 3mwb_A 200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDAD--GH 254 (313)
T ss_dssp EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEE--SC
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEe--CC
Confidence 4566767775 9999999999999999999984443333332 2234777654 65
No 62
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=85.95 E-value=8.9 Score=32.21 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=40.2
Q ss_pred EEEEEEeC--CcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEeeCCCCCCCCCHHHHHHHHHHHHH
Q 028501 15 TIVQLSFG--DRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIIN 84 (208)
Q Consensus 15 ~~v~v~~~--DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~ 84 (208)
+.+.+..+ |+||-|+++.+.|+..|+|...-.-.-..+. .--.|+|.-. |.. .+ ..+.++|++
T Consensus 207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e--g~~-~d----~~v~~AL~~ 272 (329)
T 3luy_A 207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLD--AAP-WE----ERFRDALVE 272 (329)
T ss_dssp EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEES--SCT-TS----HHHHHHHHH
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEe--CCc-CC----HHHHHHHHH
Confidence 44444444 7999999999999999999994444434443 3345777654 663 34 234444444
No 63
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=83.40 E-value=1.2 Score=34.77 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=34.9
Q ss_pred eEEEEEEe-cCcchHHHHHHHHHHhCCccEEEEEEEec--CC-eEEEEEEEE
Q 028501 129 RSLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTE--GL-VAKDKFHVS 176 (208)
Q Consensus 129 ~~~i~v~~-~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~--~~-~~~~~f~v~ 176 (208)
.+.|+|.+ +|+||++++|...|++.|+||.-+..+.. .. .....|.+.
T Consensus 35 ~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~ 86 (200)
T 4go7_X 35 EAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 86 (200)
T ss_dssp EEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecc
Confidence 46677654 79999999999999999999988765432 22 334456664
No 64
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=80.41 E-value=12 Score=30.51 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=35.3
Q ss_pred CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEee
Q 028501 13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR 62 (208)
Q Consensus 13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~~ 62 (208)
+.|.|.+.. +|+||-|+++.+.|+..|+|...-.-.-..+. .--.|+|.-
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 238 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA 238 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence 345555666 89999999999999999999994444434332 233477754
No 65
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=80.34 E-value=3.2 Score=31.65 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=35.3
Q ss_pred EEEEEE-ecCcchHHHHHHHHHHhCCccEEEEEEEec---CCeEEEEEEEEe
Q 028501 130 SLLYIE-TADRPGLLVEIMKIIADVNVDVESAEIDTE---GLVAKDKFHVSY 177 (208)
Q Consensus 130 ~~i~v~-~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~---~~~~~~~f~v~~ 177 (208)
+.|+|. ..|+||++++|...|+++|+||.....+.. .+...-.|.+..
T Consensus 17 ~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~ 68 (181)
T 3s1t_A 17 AKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 68 (181)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEET
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEeh
Confidence 555553 569999999999999999999987765432 233455677764
No 66
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=79.40 E-value=3.6 Score=36.03 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=34.7
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecC--CeeEEEEEEeeC
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRL 63 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~--~~~~d~F~v~~~ 63 (208)
...-+.+...|+||.|+.|+++|.++|++|.+....-.. +......++++.
T Consensus 358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~~~~~~v~~th~ 410 (444)
T 3mtj_A 358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGEEQVDIILLTHV 410 (444)
T ss_dssp EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC------CEEEEEEECS
T ss_pred eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCCCCceEEEEecc
Confidence 335678889999999999999999999999865443221 123455556643
No 67
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=71.58 E-value=12 Score=32.11 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=37.0
Q ss_pred eEEEEEE-ecCcchHHHHHHHHHHhCCccEEEEEEEecC---CeEEEEEEEEe
Q 028501 129 RSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEIDTEG---LVAKDKFHVSY 177 (208)
Q Consensus 129 ~~~i~v~-~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~---~~~~~~f~v~~ 177 (208)
.+.|+|. ..|+||.+++|.+.|+++|+||......+.. +...-.|.+..
T Consensus 264 ~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~ 316 (421)
T 3ab4_A 264 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPR 316 (421)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEET
T ss_pred EEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEec
Confidence 4677887 5899999999999999999999988654421 23344577753
No 68
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=70.35 E-value=4.7 Score=35.31 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=64.6
Q ss_pred CeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccC
Q 028501 13 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY 89 (208)
Q Consensus 13 ~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 89 (208)
+.+.|+|.+ .+.+|.++++.++|.++|++|.- |.+....+ +|.|...+ ...-.....++++...|.. +..
T Consensus 307 ~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~--i~ss~~si--s~~v~~~~-~~~~~~~~~~~~~~~el~~-~~~- 379 (449)
T 2j0w_A 307 NQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDL--ITTSEVSV--ALTLDTTG-STSTGDTLLTQSLLMELSA-LCR- 379 (449)
T ss_dssp EEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSE--EEEETTEE--EEEECCCC-CSSTTCCSSCHHHHHHHHH-HSC-
T ss_pred CEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEE--EEeCCCeE--EEEEeccc-cchhhHHHHHHHHHHHhcc-CCe-
Confidence 556778876 47889999999999999999984 33433222 37775432 1100001122334444332 100
Q ss_pred CCCchhhhhccccccCCCCCcccCCccccEEEEecCCCCeEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501 90 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
|.+.. +...|.+.|. ..||+.+.+..+|++ +||.-..
T Consensus 380 ------------------------------v~~~~---~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIs 419 (449)
T 2j0w_A 380 ------------------------------VEVEE---GLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMIC 419 (449)
T ss_dssp ------------------------------EEEEE---EEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEE
T ss_pred ------------------------------EEEeC---CeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEE
Confidence 22222 2367888887 588999999999966 7766543
No 69
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=67.92 E-value=28 Score=24.26 Aligned_cols=64 Identities=5% Similarity=-0.012 Sum_probs=44.9
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHHC---CceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHH
Q 028501 11 NSDATIVQLSFGDRLGALIDTMNALKDL---GLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTI 82 (208)
Q Consensus 11 ~~~~~~v~v~~~DrpGLl~~i~~~L~~~---gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L 82 (208)
.+....+.|++++.+++...|..++... ++.+ ..+-++.|.+..-++.|.- .+++.+..|.+.|
T Consensus 33 FPc~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v-------~S~eQv~aiY~~L 99 (109)
T 1rwu_A 33 FPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINA-------THIEQVETLYEEL 99 (109)
T ss_dssp CCCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECC-------SSHHHHHHHHHHH
T ss_pred CCCCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence 3466899999999999999999999988 7887 4466666666543344432 2345556655554
No 70
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=64.76 E-value=47 Score=29.53 Aligned_cols=138 Identities=14% Similarity=0.197 Sum_probs=75.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHHHhhccCCCCch
Q 028501 15 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESS 94 (208)
Q Consensus 15 ~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~ 94 (208)
..+.|.-+||||-|.+++.+|. +-||.+..-.........+++..... +. ++..+.|.+.|++. ....
T Consensus 339 ~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~~~~~~~~~~~~e~~-~~----~~~~~~~~~~l~~~----g~~~- 406 (514)
T 1tdj_A 339 ALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFADAKNACIFVGVRLS-RG----LEERKEILQMLNDG----GYSV- 406 (514)
T ss_dssp EEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECCCSSBCEEEEEEECS-ST----HHHHHHHHHHHTSS----SCEE-
T ss_pred ccccccCCCCCchHHHHHHHhC--CCceEEEEeeccCCCeEEEEEEEEeC-Cc----HHHHHHHHHHHHhC----CCCe-
Confidence 4677888999999999999887 68888665543222233344443332 21 35566666665541 1110
Q ss_pred hhhhccccccCCCCCcccCCc--cccEEEEecCCCCeEEEEEEecCcchHHHHHHHHHHhCCccEEEEEEEecCC---eE
Q 028501 95 EQLAMGEAFGIKAPEKKLDVD--IATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL---VA 169 (208)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~~~~i~v~~~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~---~~ 169 (208)
..+...+ ..+.|+. +.-+ .+...+.....+.-+.|||-|......|.. +-||.-.+-..+|. ++
T Consensus 407 ~~~~~~~-------~~~~h~~~~~g~~---~~~~~~e~~~~~~fpe~~gal~~fl~~~~~-~~~i~~~~yr~~g~~~~~~ 475 (514)
T 1tdj_A 407 VDLSDDE-------MAKLHVRYMVGGR---PSHPLQERLYSFEFPESPGALLRFLNTLGT-YWNISLFHYRSHGTDYGRV 475 (514)
T ss_dssp ETTSSCH-------HHHHTGGGTCCCC---CSSCCCCEEEEEECCCCTTHHHHHHHHHCS-CCCCCEEECBCTTTCSSCE
T ss_pred EECCCCH-------HHHHHHHHhhCCc---CccCCCceEEEEeCCCCCCHHHHHHHhcCC-CceEEEEeecCCCCCcccE
Confidence 0000000 0000111 0000 000123467888999999999998888875 56777676666663 34
Q ss_pred EEEEEE
Q 028501 170 KDKFHV 175 (208)
Q Consensus 170 ~~~f~v 175 (208)
..-|.+
T Consensus 476 ~~~~~~ 481 (514)
T 1tdj_A 476 LAAFEL 481 (514)
T ss_dssp EEEEC-
T ss_pred EEEEEc
Confidence 444444
No 71
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=59.84 E-value=8.2 Score=28.34 Aligned_cols=45 Identities=4% Similarity=0.037 Sum_probs=33.2
Q ss_pred eEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 129 RSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 129 ~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
.+.++|.+ .++||++++|..+|+++|++|.....+ . ..-.|.+.+
T Consensus 18 va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~s---~-~~Isf~v~~ 65 (157)
T 3mah_A 18 ITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATS---E-VGVSLTIDN 65 (157)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEECC---S-SEEEEEESC
T ss_pred EEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEec---C-CEEEEEECC
Confidence 46788874 478999999999999999999776532 1 233466653
No 72
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=54.51 E-value=14 Score=26.71 Aligned_cols=33 Identities=9% Similarity=0.266 Sum_probs=26.3
Q ss_pred eEEEEEEec---CcchHHHHHHHHHHhCCccEEEEE
Q 028501 129 RSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 129 ~~~i~v~~~---Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
.-.|+|.+. |-.|+++.|+..|++.||.|..+.
T Consensus 62 wr~i~v~~~l~~~~vGilA~is~pLA~agIsif~iS 97 (134)
T 1zhv_A 62 WSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVS 97 (134)
T ss_dssp EEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEE
Confidence 345565544 889999999999999999987655
No 73
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=52.80 E-value=18 Score=31.43 Aligned_cols=49 Identities=14% Similarity=0.262 Sum_probs=35.0
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCe-eEEEEEEe
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFIT 61 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~-~~d~F~v~ 61 (208)
..+.|.+..+|+||-|+++.+.|+.+|+|+..-.-.-.... .--.|+|.
T Consensus 33 dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD 82 (429)
T 1phz_A 33 GAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTY 82 (429)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEEC
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEE
Confidence 45677777799999999999999999999983333333332 22347774
No 74
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=47.64 E-value=37 Score=29.63 Aligned_cols=47 Identities=19% Similarity=0.165 Sum_probs=36.0
Q ss_pred eEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 129 RSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 129 ~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
.+.|.|.+ .++||++++|..+|+++|+||......+.. ..-.|.|..
T Consensus 318 ~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse--~~Is~~V~~ 367 (473)
T 3c1m_A 318 VALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSE--TNISLVVSE 367 (473)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCEEEEEEG
T ss_pred eEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCC--CEEEEEEec
Confidence 57888887 688999999999999999999888764322 233466654
No 75
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=47.20 E-value=29 Score=25.00 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=26.0
Q ss_pred eEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEE
Q 028501 129 RSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE 161 (208)
Q Consensus 129 ~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~ 161 (208)
+..|++.+ .|-.|+++.|+..|++.||.|.-+.
T Consensus 71 wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~iS 106 (133)
T 1zvp_A 71 FSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIA 106 (133)
T ss_dssp EEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEEEE
Confidence 44555544 7999999999999999999987654
No 76
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=44.16 E-value=68 Score=21.33 Aligned_cols=48 Identities=8% Similarity=0.186 Sum_probs=35.5
Q ss_pred EEEEEEeCC-cccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501 15 TIVQLSFGD-RLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL 63 (208)
Q Consensus 15 ~~v~v~~~D-rpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~ 63 (208)
..|++.+.. ..-+++.++..+ ...+||..|.|...++..+..+++.-.
T Consensus 26 v~l~f~g~~~~~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l~ 74 (100)
T 2qsw_A 26 VRLLFHGEQAKLPIISHIVQEY-QVEVSIIQGNIQQTKQGAVGSLYIQLL 74 (100)
T ss_dssp EEEEEESCSCSSCHHHHHHHHH-TCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEcCCCcCchHHHHHHHHh-CCCEEEEEeeceEcCCeeEEEEEEEEE
Confidence 445554433 344778887766 578999999999999988888888765
No 77
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=43.90 E-value=73 Score=21.59 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=35.2
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHHCCce-EEEEEEEecCCeeEEEEEEeeCCCCCCC
Q 028501 13 DATIVQLSFGDRLGALIDTMNALKDLGLD-VAKGTVNTEGSVKQTKFFITRLDTGRKV 69 (208)
Q Consensus 13 ~~~~v~v~~~DrpGLl~~i~~~L~~~gl~-I~~a~i~t~~~~~~d~F~v~~~~~g~~~ 69 (208)
+.+.+.+.+.| +..+...|...|+. +... ......+.. |++.|++ |+.+
T Consensus 66 ~~~~l~f~v~d----vd~~~~~l~~~G~~~~~~~-p~~~~~G~~--~~~~DPd-Gn~i 115 (128)
T 3g12_A 66 PSLQLGFQITD----LEKTVQELVKIPGAMCILD-PTDMPDGKK--AIVLDPD-GHSI 115 (128)
T ss_dssp CSEEEEEEESC----HHHHHHHHTTSTTCEEEEE-EEECC-CEE--EEEECTT-CCEE
T ss_pred CceEEEEEeCC----HHHHHHHHHHCCCceeccC-ceeCCCccE--EEEECCC-CCEE
Confidence 45678888888 88889999999999 7653 333333333 8899997 9854
No 78
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=43.36 E-value=71 Score=21.29 Aligned_cols=38 Identities=8% Similarity=0.149 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501 25 LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL 63 (208)
Q Consensus 25 pGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~ 63 (208)
.-+++.++..+ ...+||..|.|...++..+..+++.-.
T Consensus 37 ~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l~ 74 (101)
T 2qrr_A 37 APLMSQISRKY-NIDVSILSSDLDYAGGVKFGMMVAELF 74 (101)
T ss_dssp SCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred chHHHHHHHHh-CCCEEEEEeeeeEcCCeeEEEEEEEEe
Confidence 34677776655 567899999999999988888888765
No 79
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=40.72 E-value=41 Score=29.82 Aligned_cols=46 Identities=13% Similarity=0.300 Sum_probs=35.4
Q ss_pred CeEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 128 KRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 128 ~~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
+.+.|+|.+ .++||++++|..+|+++|++|.....+ ...-.|.+..
T Consensus 340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~ss----e~sis~~v~~ 388 (510)
T 2cdq_A 340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS----EVSISLTLDP 388 (510)
T ss_dssp EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE----TTEEEEEECC
T ss_pred CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeC----CCeEEEEEec
Confidence 357888886 689999999999999999999988432 2233466754
No 80
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=37.23 E-value=91 Score=20.77 Aligned_cols=48 Identities=4% Similarity=0.016 Sum_probs=34.5
Q ss_pred EEEEEEeCC-cccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501 15 TIVQLSFGD-RLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL 63 (208)
Q Consensus 15 ~~v~v~~~D-rpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~ 63 (208)
..|++.+.. ..-+++.++..+ ...+||..|.|...++..+-.++|.-.
T Consensus 23 vrL~f~g~~~~~PvIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~ 71 (98)
T 3ced_A 23 VRLVFAGSTTTEPIVSSLSTAY-DIKINILEANIKNTKNGTVGFLVLHIP 71 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHHH-TCCCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEECCCccCchHHHHHHHHH-CCcEEEEEEEeEEeCCEeEEEEEEEEe
Confidence 344444433 233667776665 578999999999999988888888765
No 81
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=35.11 E-value=1e+02 Score=20.76 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=34.1
Q ss_pred EEEEEEeCC-cccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeC
Q 028501 15 TIVQLSFGD-RLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRL 63 (208)
Q Consensus 15 ~~v~v~~~D-rpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~ 63 (208)
..|++.+.. ...+++++++.+ ...+||..|.|...++..+..+++.-.
T Consensus 24 vrL~f~g~~~~~PiIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~ 72 (106)
T 3dhx_A 24 LRLEFTGQSVDAPLLSETARRF-NVNNNIISAQMDYAGGVKFGIMLTEMH 72 (106)
T ss_dssp EEEEEEEECTTCCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEcCCccChhHHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEEEEe
Confidence 345555433 233677776665 466899999999999998888888765
No 82
>2w7v_A General secretion pathway protein L; transport, type II secretion, transport protein; 2.30A {Vibrio parahaemolyticus}
Probab=35.08 E-value=1e+02 Score=20.75 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=44.3
Q ss_pred cCCCCeEEEEEEeCCcccHHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEee
Q 028501 9 DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR 62 (208)
Q Consensus 9 ~~~~~~~~v~v~~~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~ 62 (208)
+..++-+.|.+.++|-.- |.++-..|.. |+.+....+...++.+.-.|+|..
T Consensus 35 D~~R~ELrlq~~A~dF~~-~E~lr~~l~~-gf~Ve~Gs~~~~~d~V~g~l~lr~ 86 (95)
T 2w7v_A 35 DGQRGEVRIHARSSDFQP-FEQARVKLAE-KFNVEQGQLNRSDNVVMGSFVLKR 86 (95)
T ss_dssp ETTTTEEEEEEEESSSHH-HHHHHHHHHT-TEEEEECCCEEC-CCEEEEEEEEE
T ss_pred cCCCCeEEEEEecCCHHH-HHHHHHHhhc-CcEEehhhhccCCCeEEEEEEEch
Confidence 456677899999999876 8888888876 999999999999999999999874
No 83
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=34.85 E-value=54 Score=22.56 Aligned_cols=65 Identities=8% Similarity=0.031 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCCCCCChH---HHHHHHHHHHHHcCCCCCC
Q 028501 139 RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSS---LSQVLVNCLRYYLRRPETD 204 (208)
Q Consensus 139 r~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~---~~~~l~~~l~~~l~~~~~~ 204 (208)
.+|-||.+-+.|.+.|+= ..-.....+++..-.|.+++.|+..-.+ ..+.+.+.+...+.....|
T Consensus 41 s~gtlY~~L~rLe~~GlI-~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~~~~~~~i~~il~~~~~~ 108 (115)
T 4esb_A 41 SEGSIYPLLLRMQKEKLI-EGTLKASSLGPKRKYYHITDKGLEQLEEFKQSWGMVSTTVNNLLQGESRW 108 (115)
T ss_dssp CHHHHHHHHHHHHHTTSE-EEEEEECTTSCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CcChHHHHHHHHHHCCCe-EEEeeecCCCCCcEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 389999999999999983 2222222345667778899877664443 2366667777777655544
No 84
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=34.17 E-value=34 Score=29.77 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=34.1
Q ss_pred eEEEEEEe---cCcchHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEe
Q 028501 129 RSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY 177 (208)
Q Consensus 129 ~~~i~v~~---~Dr~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~ 177 (208)
.+.|+|.+ .+.||++++|...|+++|++|...... . ..-.|.+..
T Consensus 298 ~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~---~-~~is~~V~~ 345 (446)
T 3tvi_A 298 FTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSG---V-DSVSLVIED 345 (446)
T ss_dssp EEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEE---T-TEEEEEEEH
T ss_pred EEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecC---C-CEEEEEEec
Confidence 46788886 589999999999999999999876432 1 233477754
No 85
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=34.08 E-value=38 Score=24.40 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=29.9
Q ss_pred CeEEEEEEeC---CcccHHHHHHHHHHHCCceEEEEEEEecCC
Q 028501 13 DATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGS 52 (208)
Q Consensus 13 ~~~~v~v~~~---DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~ 52 (208)
++-.|+|.++ |-.|+++.+++.|++.|+.|. -|+|...
T Consensus 61 ~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif--~iSty~t 101 (134)
T 1zhv_A 61 GWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIF--VVSTFDG 101 (134)
T ss_dssp EEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCE--EEECSSC
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeE--EEEeccc
Confidence 4456777655 788999999999999999998 6665443
No 86
>2h9z_A Hypothetical protein HP0495; feredoxin-like (beta-alpha-beta-BETA-alpha-beta), structural genomics, unknown function; NMR {Helicobacter pylori} SCOP: d.58.54.2 PDB: 2joq_A
Probab=33.58 E-value=29 Score=22.94 Aligned_cols=65 Identities=5% Similarity=-0.067 Sum_probs=39.9
Q ss_pred CCCeEEEEEEeCCccc-HHHHHHHHHHHCCceEEEEEEEecCCeeEEEEEEeeCCCCCCCCCHHHHHHHHHHHH
Q 028501 11 NSDATIVQLSFGDRLG-ALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII 83 (208)
Q Consensus 11 ~~~~~~v~v~~~DrpG-Ll~~i~~~L~~~gl~I~~a~i~t~~~~~~d~F~v~~~~~g~~~~~~~~~~~l~~~L~ 83 (208)
.+..+.+.|.+++.++ +...|..++ +.+..+...+-++.|.+..-++.+... +++.++.+.+.|.
T Consensus 12 fPc~~~~Kvig~~~~~~~~~~V~~v~-~~~~~~~~~r~Ss~GkY~Svtv~i~a~-------s~eq~~~iY~~L~ 77 (86)
T 2h9z_A 12 YPCLWDYRVIMTTKDTSTLKELLETY-QRPFKLEFKNTSKNAKFYSFNVSMEVS-------NESERNEIFQKIS 77 (86)
T ss_dssp CCSEEEEEEEECCSCTHHHHHHSTTC-CSSEECCBSCSSCCSSCEEEEEEEECC-------SHHHHHHHHHHHT
T ss_pred CCCCceEEEEEECCcHHHHHHHHHHH-hccCCCcccccCCCCeEEEEEEEEEEC-------CHHHHHHHHHHHh
Confidence 3466899999999999 999998888 444443222334444455434444432 3455666665543
No 87
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=32.32 E-value=1.4e+02 Score=21.36 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=31.3
Q ss_pred CCCeEEEEEEe---CCcccHHHHHHHHHHHCCceEEEEEEEecCC
Q 028501 11 NSDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGS 52 (208)
Q Consensus 11 ~~~~~~v~v~~---~DrpGLl~~i~~~L~~~gl~I~~a~i~t~~~ 52 (208)
..++-.+++.+ -|-.|+++.+++.|++.|+.|. -|+|...
T Consensus 68 ~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif--~iSty~t 110 (133)
T 1zvp_A 68 SALFSLITLTVHSSLEAVGLTAAFATKLAEHGISAN--VIAGYYH 110 (133)
T ss_dssp CSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCE--EEECSSC
T ss_pred CCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcE--EEEeccc
Confidence 44666777765 6899999999999999999998 6666443
No 88
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=29.21 E-value=83 Score=22.27 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=39.7
Q ss_pred eEEEEEEecCcchHHHHHHHHHHhCCc--cEEEEEEEecCCeEEEEEEEEe-CCCCCChHHHHHHHHHHHHHcCCCC
Q 028501 129 RSLLYIETADRPGLLVEIMKIIADVNV--DVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRPE 202 (208)
Q Consensus 129 ~~~i~v~~~Dr~GlL~~i~~~l~~~~i--~I~~a~i~t~~~~~~~~f~v~~-~g~~~~~~~~~~l~~~l~~~l~~~~ 202 (208)
.+.|....+| +|++..+. ..+... .-..+.+...+++ . ...+.+ +|.+++++..+.|-..|.++|.+.+
T Consensus 50 ~y~V~Y~~~~-~gf~~~lg--~~~~~~~~~~Y~i~v~~~g~~-t-~V~v~d~~G~p~~~~~a~~ll~~L~~~l~~~~ 121 (127)
T 2yh5_A 50 NMAVTYKPLS-DSDWQELG--ASDPGLASGDYKLQVGDLDNR-S-SLQFIDPKGHTLTQSQNDALVAVFQAAFSKLE 121 (127)
T ss_dssp EEEEEECCCC-HHHHHHHT--SCCCCCCSEEEEEEEEEETTE-E-EEEEECTTSCBCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeCCCC-cchHHHhc--CCCccCCCCCEEEEEEeCCCc-e-EEEEECCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3444544444 57777761 111111 1233455555665 2 334445 8999999877888888887776543
No 89
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=25.78 E-value=1.4e+02 Score=19.31 Aligned_cols=53 Identities=8% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCc-cEEEEEEEecCCeEEEEEEEEeCCCCCChHHHHHHHHHHHHHcCCCCCCC
Q 028501 144 VEIMKIIADVNV-DVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDI 205 (208)
Q Consensus 144 ~~i~~~l~~~~i-~I~~a~i~t~~~~~~~~f~v~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~ 205 (208)
..|.+++..+|+ ++..+++. ..|.+.-++. .++..+.+.......|..|-++.
T Consensus 20 ~av~~al~~LG~~~v~~VR~g-------K~~~l~~~~~--~~~a~~~v~~~~~~LLaNpVie~ 73 (84)
T 1t4a_A 20 SAVQHALHSMTYNEVQDVRIG-------KYMELTIEKS--DRDLDVLVKEMCEKLLANTVIED 73 (84)
T ss_dssp HHHHHHHHHTTCTTEEEEEEE-------EEEEEEECCC--SSCHHHHHHHHHHHTTCCTTTEE
T ss_pred HHHHHHHHHcCCCChhheEEE-------EEEEEEecCc--hHHHHHHHHHHHHHhcCCCcceE
Confidence 367789999999 69998864 3466654442 23334445444445677776543
No 90
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=22.65 E-value=1.7e+02 Score=19.31 Aligned_cols=39 Identities=8% Similarity=0.070 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHhCCccEEEEEEEecCCeEEEEEEEEeCC
Q 028501 140 PGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG 179 (208)
Q Consensus 140 ~GlL~~i~~~l~~~~i~I~~a~i~t~~~~~~~~f~v~~~g 179 (208)
.-+++++++.+ +..+||..+.+...++...-.+.+.=.|
T Consensus 34 ~PvIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G 72 (98)
T 3ced_A 34 EPIVSSLSTAY-DIKINILEANIKNTKNGTVGFLVLHIPY 72 (98)
T ss_dssp HHHHHHHHHHH-TCCCEEEEEEEEEETTEEEEEEEEEESC
T ss_pred chHHHHHHHHH-CCcEEEEEEEeEEeCCEeEEEEEEEEeC
Confidence 44667777766 4689999999999999988888886566
Done!