Query 028502
Match_columns 208
No_of_seqs 163 out of 1388
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 12:30:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 2.2E-45 4.7E-50 306.4 12.6 197 7-207 2-199 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 5.8E-23 1.3E-27 147.6 5.6 86 13-99 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.7 1.3E-18 2.9E-23 124.8 5.3 73 135-207 2-74 (87)
4 KOG1623 Multitransmembrane pro 99.7 4.6E-17 1E-21 136.4 5.1 98 3-101 117-214 (243)
5 COG4095 Uncharacterized conser 99.3 8.9E-12 1.9E-16 88.2 8.4 80 15-95 6-85 (89)
6 COG4095 Uncharacterized conser 99.3 8.4E-12 1.8E-16 88.3 7.1 73 132-207 4-76 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.8 4.7E-07 1E-11 75.7 17.0 189 14-206 4-210 (220)
8 PF04193 PQ-loop: PQ loop repe 98.3 2.3E-06 4.9E-11 57.0 6.3 55 16-70 4-58 (61)
9 PF04193 PQ-loop: PQ loop repe 98.2 7.6E-06 1.6E-10 54.4 6.4 57 134-193 3-59 (61)
10 KOG2913 Predicted membrane pro 96.5 0.14 3.1E-06 43.9 14.3 60 11-70 6-65 (260)
11 PRK01021 lpxB lipid-A-disaccha 96.4 0.16 3.4E-06 48.5 14.9 178 17-204 13-207 (608)
12 PHA02246 hypothetical protein 96.1 0.48 1E-05 37.6 13.9 172 16-208 7-182 (192)
13 KOG3211 Predicted endoplasmic 96.0 0.27 5.9E-06 40.7 12.8 182 5-197 22-204 (230)
14 smart00679 CTNS Repeated motif 95.1 0.022 4.7E-07 32.6 2.5 25 28-52 2-26 (32)
15 TIGR00951 2A43 Lysosomal Cysti 94.6 0.11 2.4E-06 43.5 6.4 50 133-185 4-53 (220)
16 smart00679 CTNS Repeated motif 93.7 0.065 1.4E-06 30.6 2.3 28 150-177 2-29 (32)
17 PF03650 MPC: Uncharacterised 91.6 0.19 4.2E-06 38.0 3.0 61 39-100 39-101 (119)
18 KOG1589 Uncharacterized conser 91.3 0.15 3.2E-06 37.9 2.0 56 39-95 43-100 (118)
19 PHA02246 hypothetical protein 87.9 6.6 0.00014 31.2 9.0 63 20-83 115-178 (192)
20 PF07578 LAB_N: Lipid A Biosyn 82.7 5.8 0.00013 27.4 5.8 61 20-83 4-65 (72)
21 PF07578 LAB_N: Lipid A Biosyn 82.7 1.2 2.7E-05 30.7 2.5 45 160-204 21-65 (72)
22 PF10688 Imp-YgjV: Bacterial i 82.7 5.7 0.00012 31.6 6.7 37 51-88 118-154 (163)
23 KOG3211 Predicted endoplasmic 74.9 9.7 0.00021 31.7 5.8 72 25-96 153-224 (230)
24 PF10688 Imp-YgjV: Bacterial i 70.4 52 0.0011 26.0 12.2 121 51-205 30-150 (163)
25 COG3952 Predicted membrane pro 69.5 44 0.00095 24.8 9.0 47 47-94 57-104 (113)
26 KOG2913 Predicted membrane pro 64.3 5.3 0.00011 34.3 2.3 49 15-66 167-215 (260)
27 PF03650 MPC: Uncharacterised 64.2 3.6 7.7E-05 31.2 1.1 43 161-203 39-83 (119)
28 KOG3145 Cystine transporter Cy 51.7 78 0.0017 28.0 7.3 34 15-48 125-158 (372)
29 PF01102 Glycophorin_A: Glycop 50.7 29 0.00063 26.4 4.1 41 4-47 61-101 (122)
30 COG3952 Predicted membrane pro 46.5 23 0.0005 26.3 2.8 70 132-205 25-94 (113)
31 KOG2532 Permease of the major 45.6 1.3E+02 0.0029 27.9 8.4 181 3-187 254-445 (466)
32 KOG3106 ER lumen protein retai 39.0 2E+02 0.0043 23.8 7.4 52 150-202 130-185 (212)
33 PF01372 Melittin: Melittin; 38.6 60 0.0013 17.6 2.9 17 25-41 8-24 (26)
34 PF06946 Phage_holin_5: Phage 35.3 1.7E+02 0.0038 21.1 6.7 63 34-98 23-85 (93)
35 PF07857 DUF1632: CEO family ( 34.8 98 0.0021 26.5 5.4 66 133-198 180-254 (254)
36 PRK01021 lpxB lipid-A-disaccha 32.6 3.1E+02 0.0067 26.6 8.8 77 9-91 138-215 (608)
37 PF06813 Nodulin-like: Nodulin 26.4 3E+02 0.0065 23.3 6.9 20 15-34 40-59 (250)
38 PF08733 PalH: PalH/RIM21; In 26.1 4.7E+02 0.01 23.3 11.2 84 16-100 165-257 (348)
39 KOG3618 Adenylyl cyclase [Gene 24.9 7.6E+02 0.016 25.3 11.5 16 53-68 88-103 (1318)
40 PF07857 DUF1632: CEO family ( 24.2 1.9E+02 0.0042 24.7 5.3 66 11-77 180-254 (254)
41 TIGR00341 conserved hypothetic 24.0 2.3E+02 0.005 25.2 6.0 49 49-98 245-293 (325)
42 PRK11387 S-methylmethionine tr 22.8 5.3E+02 0.012 23.4 8.4 19 20-38 373-391 (471)
43 PRK10580 proY putative proline 22.3 5.9E+02 0.013 23.0 8.7 25 15-39 361-385 (457)
44 KOG4314 Predicted carbohydrate 21.7 2.3E+02 0.0049 23.8 5.1 56 6-61 127-183 (290)
45 PF06800 Sugar_transport: Suga 21.2 5.4E+02 0.012 22.2 10.1 41 50-90 140-184 (269)
46 KOG1589 Uncharacterized conser 20.9 49 0.0011 24.7 1.0 43 161-203 43-87 (118)
47 PF05602 CLPTM1: Cleft lip and 20.6 2.6E+02 0.0056 25.7 5.8 70 17-87 305-375 (438)
48 PRK12612 putative monovalent c 20.5 3.2E+02 0.0069 19.2 6.8 19 26-44 14-32 (87)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=2.2e-45 Score=306.45 Aligned_cols=197 Identities=49% Similarity=0.890 Sum_probs=177.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHhhcc-CcceeehhhhHHHHHHH
Q 028502 7 HDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKK-DAFLLITINAFGCVIET 85 (208)
Q Consensus 7 ~~~~~~i~g~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~-d~~~i~~~N~~g~~l~~ 85 (208)
.+.....+|.+|.+.++++|++|+|+++||+|+||+|+.++.||+++.+||.+|+.||.+++ |. .++..|++|..+++
T Consensus 2 ~~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~-llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 2 GNVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDY-LLITINGIGLVIET 80 (243)
T ss_pred cchHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCce-EEEEEehhcHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999888 76 47889999999999
Q ss_pred HHHhhHhhcccchhHHHHHHHHHHHHHHHHHHHHhhhheeecchhHHHHhhhhHHHHHHHHHhhcchhhhhHHhhcCCCC
Q 028502 86 IYLALYITFAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVE 165 (208)
Q Consensus 86 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~ 165 (208)
+|+..|+.|+++|++...+ .....+.++++++.++...|+++++.+.+|.+|++++++||+|||..+++|+|+||+|
T Consensus 81 ~Yi~~f~~ya~~k~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE 157 (243)
T KOG1623|consen 81 VYISIFLYYAPKKKTVKIV---LALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVE 157 (243)
T ss_pred HHHHHHheecCchheeEee---ehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCcee
Confidence 9999999999987733211 1222334555666777778888888999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHHHhhhcCCeeEEechHHHHHHHhc
Q 028502 166 FMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVSSFLAQIYIYT 207 (208)
Q Consensus 166 ~i~~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~l~~~ 207 (208)
+||++++.+.++++..|++||++++|.|+.+||++|.++|+.
T Consensus 158 ~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~ 199 (243)
T KOG1623|consen 158 YMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLI 199 (243)
T ss_pred eechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHH
Confidence 999999999999999999999999999999999999999863
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.88 E-value=5.8e-23 Score=147.57 Aligned_cols=86 Identities=34% Similarity=0.709 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHhhccCcceeehhhhHHHHHHHHHHhhHh
Q 028502 13 AFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYI 92 (208)
Q Consensus 13 i~g~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~~~~~~ 92 (208)
++|++|.+.++++++||+|+++|++|+||+|++|+.|++++++||.+|+.||++.+|++ ++.+|++|.+++.+|+.+|+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~-i~~~N~~g~~~~~~~~~~~~ 80 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWP-IIVPNVFGLVLSIIYLVVYY 80 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCee-EEeeHHHHHHHHHHHHhheE
Confidence 57899999999999999999999999999999999999999999999999999999995 78999999999999999999
Q ss_pred hcccchh
Q 028502 93 TFAPKQA 99 (208)
Q Consensus 93 ~y~~~~~ 99 (208)
+|+++||
T Consensus 81 ~y~~~~~ 87 (87)
T PF03083_consen 81 IYPSKKK 87 (87)
T ss_pred EeCCCCC
Confidence 9998764
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.75 E-value=1.3e-18 Score=124.83 Aligned_cols=73 Identities=29% Similarity=0.532 Sum_probs=70.5
Q ss_pred hhhhHHHHHHHHHhhcchhhhhHHhhcCCCCccChHHHHHHHHHHHHHHHHhhhcCCeeEEechHHHHHHHhc
Q 028502 135 LLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVSSFLAQIYIYT 207 (208)
Q Consensus 135 ~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~i~~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~l~~~ 207 (208)
.+|.+|.+.++++|+||++++++++|+|+++++|.++.+++++||.+|+.||++++|++++++|++|.+++..
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~ 74 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSII 74 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999999998863
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.67 E-value=4.6e-17 Score=136.41 Aligned_cols=98 Identities=23% Similarity=0.470 Sum_probs=89.8
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHhhccCcceeehhhhHHHH
Q 028502 3 MFSTHDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCV 82 (208)
Q Consensus 3 ~~~~~~~~~~i~g~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~ 82 (208)
.+++++.+.+.+|.+|.+.++++|.||+..+++++|+||+|.+++.-..+.++++..|+.||++.+|.+ +.++|++|..
T Consensus 117 ~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYGlli~D~~-IaipN~iG~~ 195 (243)
T KOG1623|consen 117 LFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYGLLIKDFF-IAIPNVLGFL 195 (243)
T ss_pred hcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHHHHhcCeE-EEcccHHHHH
Confidence 578888889999999999999999999999999999999998876666788999999999999999998 6799999999
Q ss_pred HHHHHHhhHhhcccchhHH
Q 028502 83 IETIYLALYITFAPKQARL 101 (208)
Q Consensus 83 l~~~~~~~~~~y~~~~~~~ 101 (208)
++..|+.+|++|++++++.
T Consensus 196 l~~~QL~Ly~~y~~~~~~~ 214 (243)
T KOG1623|consen 196 LGLIQLILYFKYPKTTEKI 214 (243)
T ss_pred HHHHHHHHhhhcCCCcccc
Confidence 9999999999998876443
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=8.9e-12 Score=88.20 Aligned_cols=80 Identities=20% Similarity=0.448 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHhhccCcceeehhhhHHHHHHHHHHhhHhhc
Q 028502 15 GLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITF 94 (208)
Q Consensus 15 g~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~~~~~~~y 94 (208)
-++|.++++...++.+||..+++|+||++++|+..++.....+.+|+.||.+.+|. |+...|.++..++..-++...+|
T Consensus 6 ~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~l-Pii~aN~i~~il~liIl~~kI~~ 84 (89)
T COG4095 6 EVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDL-PIIIANIISFILSLIILFYKIKY 84 (89)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777999999999999999999999999999999999999999998 78899999999999888777776
Q ss_pred c
Q 028502 95 A 95 (208)
Q Consensus 95 ~ 95 (208)
.
T Consensus 85 ~ 85 (89)
T COG4095 85 I 85 (89)
T ss_pred H
Confidence 4
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=8.4e-12 Score=88.34 Aligned_cols=73 Identities=15% Similarity=0.464 Sum_probs=69.1
Q ss_pred HHHhhhhHHHHHHHHHhhcchhhhhHHhhcCCCCccChHHHHHHHHHHHHHHHHhhhcCCeeEEechHHHHHHHhc
Q 028502 132 RLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVSSFLAQIYIYT 207 (208)
Q Consensus 132 ~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~i~~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~l~~~ 207 (208)
..+..|.+++.++..+| |||+-+++|+||++++++++.+......++|+.||++++|.++.+.|.++.++++.
T Consensus 4 ~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~li 76 (89)
T COG4095 4 FIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLI 76 (89)
T ss_pred hhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 46788999999999888 99999999999999999999999999999999999999999999999999999874
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.81 E-value=4.7e-07 Score=75.69 Aligned_cols=189 Identities=13% Similarity=0.117 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHh------hccCccee----ehhhhHHHHH
Q 028502 14 FGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAM------MKKDAFLL----ITINAFGCVI 83 (208)
Q Consensus 14 ~g~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~------l~~d~~~i----~~~N~~g~~l 83 (208)
-..+|.....+-..+-+||+++.+|+||++++|+..+..-......|..|=. -.++.+|. +..|-+-..+
T Consensus 4 S~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~~~~~~~~v~~edl~~ai 83 (220)
T TIGR00951 4 SQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNEFPLSSPGVTQNDVFFTL 83 (220)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhccccccCCCcHHHHHHHH
Confidence 3556677777777789999999999999999999999888888899999931 11111121 1113333222
Q ss_pred HHH-----HHhhHhhcccchhHHHHHHHHHHHHHHHHHHHH--hhhheeecchhHHHHhhhhHHHHHHHHHhhcchhhhh
Q 028502 84 ETI-----YLALYITFAPKQARLYTLRLLLLLNFGGFGSIL--LLSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIMR 156 (208)
Q Consensus 84 ~~~-----~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~G~~~~~~~i~~~~sPL~~i~ 156 (208)
+.. -..-+.+|.+.++|... +.........+...+ .........+.+....++.+-..+++.-| +||++
T Consensus 84 ~~~il~~l~~~q~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~iky---iPQi~ 159 (220)
T TIGR00951 84 HAILICFIVLHQCGDYERGWQRVSN-PWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLVKY---FPQAA 159 (220)
T ss_pred HHHHHHHHHHHHHhhccccccccch-hHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH---hHHHH
Confidence 222 22222333332222111 111000001111111 11111122344566677777777766655 89999
Q ss_pred HHhhcCCCCccChHHHHHHHHHHHHHHHHhhh-cCCeeEEechHHHHHHHh
Q 028502 157 LVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLF-LKDVYVAVSSFLAQIYIY 206 (208)
Q Consensus 157 ~vi~tk~~~~i~~~~~~~~~~~~~~W~~YG~~-~~D~~i~~pN~~g~~l~~ 206 (208)
...|+||++..|.......+..++.=..-... .+|+..+.--.++..++.
T Consensus 160 ~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~ 210 (220)
T TIGR00951 160 TNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNG 210 (220)
T ss_pred HHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999999998888888886665555553 356655555555555543
No 8
>PF04193 PQ-loop: PQ loop repeat
Probab=98.31 E-value=2.3e-06 Score=56.98 Aligned_cols=55 Identities=24% Similarity=0.498 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHhhccCc
Q 028502 16 LLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDA 70 (208)
Q Consensus 16 ~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~ 70 (208)
.+|.+..++...+.+||+++.+|+||++++|...+.....+..+|+.|.++.++.
T Consensus 4 ~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 4 ILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566667777778999999999999999999999999999999999999988775
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=98.17 E-value=7.6e-06 Score=54.40 Aligned_cols=57 Identities=18% Similarity=0.460 Sum_probs=49.7
Q ss_pred HhhhhHHHHHHHHHhhcchhhhhHHhhcCCCCccChHHHHHHHHHHHHHHHHhhhcCCee
Q 028502 134 RLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVY 193 (208)
Q Consensus 134 ~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~i~~~~~~~~~~~~~~W~~YG~~~~D~~ 193 (208)
+.+|.++.+.....+ +||+.+.+|+|+++++++.+......++++|+.|.+..++.+
T Consensus 3 ~~~g~i~~~~~~~~~---lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~~ 59 (61)
T PF04193_consen 3 NILGIISIVLWIISF---LPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYPF 59 (61)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 466777777755554 999999999999999999999999999999999999987754
No 10
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=96.51 E-value=0.14 Score=43.91 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHhhccCc
Q 028502 11 VFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDA 70 (208)
Q Consensus 11 ~~i~g~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~ 70 (208)
.+.-..+|++.+++--.+-.||+.+..|+||.+++|+.+.+.-......=+.|..+.+-.
T Consensus 6 ~~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~~ 65 (260)
T KOG2913|consen 6 DTLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPLG 65 (260)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcccc
Confidence 344555666666676677899999999999999999988887777667667777666543
No 11
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.36 E-value=0.16 Score=48.53 Aligned_cols=178 Identities=12% Similarity=0.099 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHH-HHHHHHHHHHHHHhhccCcceeehhhhHHHHHHHHHHhhHhhcc
Q 028502 17 LGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYV-VALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFA 95 (208)
Q Consensus 17 l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~-~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~~~~~~~y~ 95 (208)
+|.+..+....--+-|-..-.|+| +..-|.-|+ .+...+.+=+.||++.+|. +++...++|.++..=-+.+-.
T Consensus 13 ~G~~~q~~F~~rf~~QW~~sek~~--~s~~p~~FW~~Sl~g~~~l~~y~~~~~~~-~~~~~q~~~~~iy~rNl~l~~--- 86 (608)
T PRK01021 13 LGLFANLFFGSAFCIQWFLSKKRK--YSYVPKIFWILSSIGAVLMICHGFIQSQF-PIALLHSFNLIIYFRNLNIAS--- 86 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--CccCchHHHHHHHHHHHHHHHHHHHhcCC-cEEEecccceEEEeehhhhcc---
Confidence 444444544444444544444444 344567776 8888999999999999776 455545555432111111111
Q ss_pred cchhHHHHHHHHHHHHHHHHHH-HHhhhheee---------------cchhHHHHhhhhHHHHHHHHHhhcchhhhhHHh
Q 028502 96 PKQARLYTLRLLLLLNFGGFGS-ILLLSHFLA---------------KGSAARLRLLGWVCVVFSVSVFAAPLSIMRLVV 159 (208)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~---------------~~~~~~~~~~G~~~~~~~i~~~~sPL~~i~~vi 159 (208)
+++...+....+.+..++.+.+ +.+.+++.. ++.+.....+|+++.++-..=| +-| +-.-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf---~~Q-w~~s 162 (608)
T PRK01021 87 SRPLSVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRF---FIQ-WFYL 162 (608)
T ss_pred cccchHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHH---HHH-HHHH
Confidence 1111112111111111111110 111222211 1122334567777766422222 222 2233
Q ss_pred hcCCCCccChHHHHHHHHHHHHHHHHhhhcCCeeEEechHHHHHH
Q 028502 160 RTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVSSFLAQIY 204 (208)
Q Consensus 160 ~tk~~~~i~~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~l 204 (208)
+++..+.+|...-..+++.+++=++|++.++|+-.++.++.|.+.
T Consensus 163 e~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~ 207 (608)
T PRK01021 163 EYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFP 207 (608)
T ss_pred HhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhH
Confidence 566778889999999999999999999999999999999998864
No 12
>PHA02246 hypothetical protein
Probab=96.10 E-value=0.48 Score=37.56 Aligned_cols=172 Identities=15% Similarity=0.250 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHhhccC--cceeehhhhHHHHHHHHHHhhHhh
Q 028502 16 LLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKD--AFLLITINAFGCVIETIYLALYIT 93 (208)
Q Consensus 16 ~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d--~~~i~~~N~~g~~l~~~~~~~~~~ 93 (208)
.+...-++.....-.|+++...|.|+.+++| -.|+-....+.+-..|-.+..| .+.+ .+-+....++.+.+.+- .
T Consensus 7 ~~s~~yailit~gYipgL~slvk~~nv~GvS-~~FWYLi~~tvgiSfyNlL~T~~~~fqi-~svg~nl~lgivcLlv~-~ 83 (192)
T PHA02246 7 YLSILYAILITVGYIPGLVALVKAESVKGVS-NYFWYLIVATVGISFYNLLLTDASVFQI-VSVGLNLTLGIVCLLVA-S 83 (192)
T ss_pred HHHHHHHHHHHhhhhhhHHHHhhhcccccHH-HHHHHHHHHHHHHHHHHHHhcCCceEEE-eeeehhhhhhhhheeee-h
Confidence 3445556666777899999999999999985 3455566667788889887644 3343 34455556666555432 2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhheeecchhHHHHhhhhHHHHHHHHHhhcchhhhhHHhhcCCCCccChHHHH
Q 028502 94 FAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSL 173 (208)
Q Consensus 94 y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~i~~~~~~ 173 (208)
|++ |....+-... +..+. ++...+..+..+.+|-. .-+..| .+|+.+-.|||++|+.+..+.+
T Consensus 84 ~rk---kd~f~~~fii--ifSLl------lfll~~~~evtQtVat~---tIiLaY---i~QIIqfyKTK~SEg~n~~l~l 146 (192)
T PHA02246 84 YRK---KDYFSIPFII--VFSLL------LFLLSDFTALTQTVATI---TIILAY---VTQITTFYKTKSAEGTNRFLFL 146 (192)
T ss_pred hhc---cccccchHHH--HHHHH------HHHHhhhHHHHHHHHHH---HHHHHH---HHHHHHHhhhcccCCCChhHHH
Confidence 321 2111111110 00111 11111211233343332 222344 7899999999999999865443
Q ss_pred HHHHHHHHHHHHhhhc--CCeeEEechHHHHHHHhcC
Q 028502 174 FLTLNAVMWFFYGLFL--KDVYVAVSSFLAQIYIYTC 208 (208)
Q Consensus 174 ~~~~~~~~W~~YG~~~--~D~~i~~pN~~g~~l~~~~ 208 (208)
.-.. ++.-....... --.+|.+......++-++|
T Consensus 147 ii~~-GL~~L~~~m~Lthv~~hIiiTEf~N~iLiLiC 182 (192)
T PHA02246 147 IIGL-GLASLIVSMVLTHTYVHIIATEFVNFVLILIC 182 (192)
T ss_pred HHHH-HHHHHHHHHhhhCCcceeeHHHHHHHHHHHHH
Confidence 3222 22222223332 3455778888888777766
No 13
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=96.04 E-value=0.27 Score=40.69 Aligned_cols=182 Identities=13% Similarity=0.099 Sum_probs=99.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHhhccCcceeehhhhHHHHHH
Q 028502 5 STHDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIE 84 (208)
Q Consensus 5 ~~~~~~~~i~g~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~ 84 (208)
+.+-...-+.+.+|.........--+||+.+|+..||++++|...+..-.+.-..-..|.+-.+=+| .-.--..=..++
T Consensus 22 ~~~cl~~llsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~~~g~pF-ss~gE~~fLl~Q 100 (230)
T KOG3211|consen 22 HKDCLKALLSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSYTSGYPF-SSYGEYPFLLLQ 100 (230)
T ss_pred CccchHHHHHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehhhcCCCc-hhHHHHHHHHHH
Confidence 3444455566667776666666668999999999999999999888888888888888887555443 223333334444
Q ss_pred HHHHhhHhhcccchhHHHHHHHHHHHHHHHHHHHHhhhheeecchhHHHHhhhhHHHHHHHHHhhcchhhhhHHhhcCCC
Q 028502 85 TIYLALYITFAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGSAARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSV 164 (208)
Q Consensus 85 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~ 164 (208)
.+-+..+..+-+.. .....+.... .+.+. ...+....+....+..-..+.- ..-.+-++|+..-.|+|++
T Consensus 101 ~vili~~if~f~~~-~~~~v~~l~~-----~~~v~-~~~~sk~~p~~~~~L~~~~~l~---i~v~sr~~Qi~~n~~~~~t 170 (230)
T KOG3211|consen 101 AVILILCIFHFSGQ-TVTVVQFLGY-----IALVV-SVLASKALPLWIITLAQNLCLP---IVVVSRLLQIQCNYHNRST 170 (230)
T ss_pred HHHHHHHHHHhccc-eeehhhHHHH-----HHHHH-HHHHHhhhhHHHHHHHHhcCch---hhhHHHHHHHHHHhccccc
Confidence 44333332222210 0000001110 00000 0011111111222222212211 2225567777777788888
Q ss_pred CccChHHHHHHHHHHHHHHHHhhhc-CCeeEEec
Q 028502 165 EFMPFYLSLFLTLNAVMWFFYGLFL-KDVYVAVS 197 (208)
Q Consensus 165 ~~i~~~~~~~~~~~~~~W~~YG~~~-~D~~i~~p 197 (208)
..+++.-...++-.+.-=..|.+.. +|.-+...
T Consensus 171 gqls~it~fLsf~g~lARiftsiq~t~d~~mll~ 204 (230)
T KOG3211|consen 171 GQLSLITVFLSFGGCLARIFTSIQETGDFLMLLR 204 (230)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHH
Confidence 8888777777777777777777753 55555433
No 14
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=95.11 E-value=0.022 Score=32.58 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=20.9
Q ss_pred hcHHHHHHHHHhcCCCCccchhHHH
Q 028502 28 APMPTFYRVCKKKSTEGFQSLPYVV 52 (208)
Q Consensus 28 splp~~~~i~k~kst~~~s~~p~~~ 52 (208)
+-+||+.+.+|+||++++|+..+.+
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l 26 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLL 26 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHH
Confidence 5689999999999999997665543
No 15
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=94.59 E-value=0.11 Score=43.47 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=43.7
Q ss_pred HHhhhhHHHHHHHHHhhcchhhhhHHhhcCCCCccChHHHHHHHHHHHHHHHH
Q 028502 133 LRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFY 185 (208)
Q Consensus 133 ~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~i~~~~~~~~~~~~~~W~~Y 185 (208)
.+.+|....+.....+ +||+.+..|+||++++++.......+....|..|
T Consensus 4 S~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 4567777777666555 8999999999999999999999999999999999
No 16
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=93.68 E-value=0.065 Score=30.55 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=23.0
Q ss_pred cchhhhhHHhhcCCCCccChHHHHHHHH
Q 028502 150 APLSIMRLVVRTKSVEFMPFYLSLFLTL 177 (208)
Q Consensus 150 sPL~~i~~vi~tk~~~~i~~~~~~~~~~ 177 (208)
+-+||+.+.+|+|+++++++.+....+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 4589999999999999999877665443
No 17
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=91.59 E-value=0.19 Score=37.98 Aligned_cols=61 Identities=16% Similarity=0.327 Sum_probs=52.0
Q ss_pred hcCCCCccchhHHHHHHHHHHHHHHHhhc--cCcceeehhhhHHHHHHHHHHhhHhhcccchhH
Q 028502 39 KKSTEGFQSLPYVVALFSAMLWIYYAMMK--KDAFLLITINAFGCVIETIYLALYITFAPKQAR 100 (208)
Q Consensus 39 ~kst~~~s~~p~~~~~~n~~lW~~YG~l~--~d~~~i~~~N~~g~~l~~~~~~~~~~y~~~~~~ 100 (208)
+|..|.+|..+-....+.+.+|..|++.+ +|+ .++.+|..-...+.+|+.=++.|...+++
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny-~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~ 101 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNY-LLFACNFFNATTQLYQLYRKLNYQYSQKK 101 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 57899999999999999999999999987 467 48999999999999999888777654443
No 18
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.28 E-value=0.15 Score=37.88 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=49.4
Q ss_pred hcCCCCccchhHHHHHHHHHHHHHHHhhc--cCcceeehhhhHHHHHHHHHHhhHhhcc
Q 028502 39 KKSTEGFQSLPYVVALFSAMLWIYYAMMK--KDAFLLITINAFGCVIETIYLALYITFA 95 (208)
Q Consensus 39 ~kst~~~s~~p~~~~~~n~~lW~~YG~l~--~d~~~i~~~N~~g~~l~~~~~~~~~~y~ 95 (208)
.|..|.+|.............|..|++.+ +|+. ++.+|.+=...+.+|+.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~-LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYS-LFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999877 5786 79999999999999998888884
No 19
>PHA02246 hypothetical protein
Probab=87.93 E-value=6.6 Score=31.23 Aligned_cols=63 Identities=16% Similarity=0.263 Sum_probs=38.4
Q ss_pred HHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHh-hccCcceeehhhhHHHHH
Q 028502 20 IVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAM-MKKDAFLLITINAFGCVI 83 (208)
Q Consensus 20 v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~-l~~d~~~i~~~N~~g~~l 83 (208)
+.++...++-+||+.+-.|+|++|+.|+.-++.....-. -....+ +++-..-++++....+.+
T Consensus 115 Vat~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~-~L~~~m~Lthv~~hIiiTEf~N~iL 178 (192)
T PHA02246 115 VATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLA-SLIVSMVLTHTYVHIIATEFVNFVL 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHH-HHHHHHhhhCCcceeeHHHHHHHHH
Confidence 445556677899999999999999998877764333222 223333 334332245555554443
No 20
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=82.75 E-value=5.8 Score=27.37 Aligned_cols=61 Identities=21% Similarity=0.370 Sum_probs=39.9
Q ss_pred HHHHHHHHhcHHHHHHHHHhcCCCCccchhHH-HHHHHHHHHHHHHhhccCcceeehhhhHHHHH
Q 028502 20 IVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYV-VALFSAMLWIYYAMMKKDAFLLITINAFGCVI 83 (208)
Q Consensus 20 v~si~~~~splp~~~~i~k~kst~~~s~~p~~-~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l 83 (208)
+..+....--+-|-..-.|+|.+ .-|..|+ .+...+.+=+.||+..+|+. .+...+.|.+.
T Consensus 4 ~gq~lF~~Rf~~QW~~SEk~k~s--v~P~~FW~lSl~Gs~lll~Y~i~r~DpV-~ilgq~~gl~i 65 (72)
T PF07578_consen 4 IGQLLFSSRFIVQWIYSEKAKKS--VVPVAFWYLSLIGSLLLLIYAIIRKDPV-FILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHHHHHHHHHHHHcChH-HHHHHhcChHH
Confidence 33344444445555555555544 3466665 88899999999999999984 45566666554
No 21
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=82.72 E-value=1.2 Score=30.69 Aligned_cols=45 Identities=9% Similarity=0.219 Sum_probs=38.0
Q ss_pred hcCCCCccChHHHHHHHHHHHHHHHHhhhcCCeeEEechHHHHHH
Q 028502 160 RTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVSSFLAQIY 204 (208)
Q Consensus 160 ~tk~~~~i~~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~l 204 (208)
|++..+.+|...-..+.+.+++=++||+.++|+..++..+.|.+.
T Consensus 21 Ek~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~i 65 (72)
T PF07578_consen 21 EKAKKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFI 65 (72)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHH
Confidence 556667789999999999999999999999999877777777654
No 22
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=82.65 E-value=5.7 Score=31.57 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhccCcceeehhhhHHHHHHHHHH
Q 028502 51 VVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYL 88 (208)
Q Consensus 51 ~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~~ 88 (208)
....+++.+|+.|+++.+++. ....|......+.+.+
T Consensus 118 ~~~l~~~~~w~~~n~~igS~~-g~l~e~~~~~~n~~~i 154 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILIGSWG-GTLMEALFIISNLITI 154 (163)
T ss_pred HHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHH
Confidence 457889999999999999995 6778888888777554
No 23
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=74.85 E-value=9.7 Score=31.73 Aligned_cols=72 Identities=10% Similarity=0.180 Sum_probs=54.5
Q ss_pred HHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHhhccCcceeehhhhHHHHHHHHHHhhHhhccc
Q 028502 25 VFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAP 96 (208)
Q Consensus 25 ~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~~~~~~~y~~ 96 (208)
...+-++|+.+-.|+|++|+.+.....+.+..|..=+.|.....+.+.+...-.+...++..-..-..+|.+
T Consensus 153 ~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s 224 (230)
T KOG3211|consen 153 VVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWS 224 (230)
T ss_pred hhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHh
Confidence 346678999999999999999999999999999999999987643333556666667666665555555543
No 24
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=70.35 E-value=52 Score=26.04 Aligned_cols=121 Identities=12% Similarity=0.189 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhhccCcceeehhhhHHHHHHHHHHhhHhhcccchhHHHHHHHHHHHHHHHHHHHHhhhheeecchh
Q 028502 51 VVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAPKQARLYTLRLLLLLNFGGFGSILLLSHFLAKGSA 130 (208)
Q Consensus 51 ~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (208)
......+.++...-.+.+.+. -+.+..++.....+..++++ +.. .... .......+.. .-+
T Consensus 30 ~~~~~~~~~~~ihf~LLGa~t-----aa~~~~ls~~R~~~s~~~~~---~~v--~~~F------i~~~~~~~~~---~~~ 90 (163)
T PF10688_consen 30 LLQAISCLLFAIHFALLGAWT-----AALSMLLSAVRNFVSIRTRS---RWV--MAVF------IALSLVMGLF---TWQ 90 (163)
T ss_pred HHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHHHHHhCC---HHH--HHHH------HHHHHHHHHH---HHh
Confidence 345567777777777777763 34556666666666555543 111 1111 1111111222 123
Q ss_pred HHHHhhhhHHHHHHHHHhhcchhhhhHHhhcCCCCccChHHHHHHHHHHHHHHHHhhhcCCeeEEechHHHHHHH
Q 028502 131 ARLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVSSFLAQIYI 205 (208)
Q Consensus 131 ~~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~i~~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~l~ 205 (208)
.-.+.++.++++.....-. .+ +. ..+-....+++.+|..|++.++++....-|..-.+.+
T Consensus 91 g~~~~l~~~as~~~t~a~f-----~~--------~~--~~mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n 150 (163)
T PF10688_consen 91 GWIELLPYAASVLGTIALF-----ML--------DG--IKMRILMLVGTLCWLIYNILIGSWGGTLMEALFIISN 150 (163)
T ss_pred hHHHHHHHHHHHHHHHHHH-----hc--------Cc--hhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 4567777777766544321 11 12 2244578999999999999999988777666655544
No 25
>COG3952 Predicted membrane protein [Function unknown]
Probab=69.50 E-value=44 Score=24.83 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=38.9
Q ss_pred chhHH-HHHHHHHHHHHHHhhccCcceeehhhhHHHHHHHHHHhhHhhc
Q 028502 47 SLPYV-VALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITF 94 (208)
Q Consensus 47 ~~p~~-~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~~~~~~~y 94 (208)
|.+|+ ++.+.+.+=+.|-+-++|+.- +..|+.|++....-+.+.++-
T Consensus 57 P~~FW~~sllGg~l~L~Yfi~~~DpV~-Vl~~~~glF~~l~nL~L~~ke 104 (113)
T COG3952 57 PVLFWYFSLLGGLLLLSYFIRRQDPVF-VLGQACGLFIYLRNLWLIIKE 104 (113)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhcchHH-HHHHhhhHHHHHHHHHHHHHH
Confidence 67776 888999999999999999864 578999999988877666553
No 26
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=64.30 E-value=5.3 Score=34.33 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHhh
Q 028502 15 GLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMM 66 (208)
Q Consensus 15 g~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l 66 (208)
.++|.+.+.+-..+.+||+..-+|+|+++++++..|.. ++..=..|+.-
T Consensus 167 ~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~---~~~~n~~y~~s 215 (260)
T KOG2913|consen 167 AILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAF---NSLGNTTYILS 215 (260)
T ss_pred HHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHH---HHccccccccc
Confidence 34666777778889999999999999999998865554 33444455543
No 27
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=64.24 E-value=3.6 Score=31.19 Aligned_cols=43 Identities=14% Similarity=0.307 Sum_probs=35.5
Q ss_pred cCCCCccChHHHHHHHHHHHHHHHHhhhc--CCeeEEechHHHHH
Q 028502 161 TKSVEFMPFYLSLFLTLNAVMWFFYGLFL--KDVYVAVSSFLAQI 203 (208)
Q Consensus 161 tk~~~~i~~~~~~~~~~~~~~W~~YG~~~--~D~~i~~pN~~g~~ 203 (208)
+|+.|.++..+..+-++.+.+|.=|.+.+ +|..++.-|+.-..
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~ 83 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNAT 83 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHH
Confidence 68999999999999999999999999987 66656555655443
No 28
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=51.67 E-value=78 Score=28.05 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccch
Q 028502 15 GLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSL 48 (208)
Q Consensus 15 g~l~~v~si~~~~splp~~~~i~k~kst~~~s~~ 48 (208)
.++|.+.-..=..|..||++.-+|+||+.++|+-
T Consensus 125 ~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfD 158 (372)
T KOG3145|consen 125 QIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFD 158 (372)
T ss_pred hhhheeEEEEEeeeechHHHhhhhhcceeccccc
Confidence 3444443333445778999999999999998753
No 29
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.73 E-value=29 Score=26.36 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=21.7
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccc
Q 028502 4 FSTHDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQS 47 (208)
Q Consensus 4 ~~~~~~~~~i~g~l~~v~si~~~~splp~~~~i~k~kst~~~s~ 47 (208)
|+.++....++|+++-++.++++++.+ +|| +|+|+..+..+
T Consensus 61 fs~~~i~~Ii~gv~aGvIg~Illi~y~--irR-~~Kk~~~~~~p 101 (122)
T PF01102_consen 61 FSEPAIIGIIFGVMAGVIGIILLISYC--IRR-LRKKSSSDVQP 101 (122)
T ss_dssp SS-TCHHHHHHHHHHHHHHHHHHHHHH--HHH-HS---------
T ss_pred ccccceeehhHHHHHHHHHHHHHHHHH--HHH-HhccCCCCCCC
Confidence 677888889999998888877654443 233 33444344444
No 30
>COG3952 Predicted membrane protein [Function unknown]
Probab=46.50 E-value=23 Score=26.28 Aligned_cols=70 Identities=13% Similarity=0.197 Sum_probs=51.6
Q ss_pred HHHhhhhHHHHHHHHHhhcchhhhhHHhhcCCCCccChHHHHHHHHHHHHHHHHhhhcCCeeEEechHHHHHHH
Q 028502 132 RLRLLGWVCVVFSVSVFAAPLSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLFLKDVYVAVSSFLAQIYI 205 (208)
Q Consensus 132 ~~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk~~~~i~~~~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~~l~ 205 (208)
.-+.+|..+..+-..=| +-| .-..+.++.+.+|.+.--++.+.+.+=+.|-+-++|..=...|+.|+.-+
T Consensus 25 ~W~LiG~~g~~lFt~Rf---~VQ-w~~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~ 94 (113)
T COG3952 25 SWKLIGFSGQLLFTGRF---VVQ-WLASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIY 94 (113)
T ss_pred HHHHHHHHHHHHHHHHH---HHH-HHHHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHH
Confidence 45667776665422222 222 33447888899999999999999999999999999998778888887654
No 31
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=45.57 E-value=1.3e+02 Score=27.86 Aligned_cols=181 Identities=15% Similarity=0.212 Sum_probs=94.9
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhcHHHHHH-HH--HhcCCCCccchhHHHHHHHHHHHHHHHh-hccC----cceee
Q 028502 3 MFSTHDPSVFAFGLLGNIVSFIVFLAPMPTFYR-VC--KKKSTEGFQSLPYVVALFSAMLWIYYAM-MKKD----AFLLI 74 (208)
Q Consensus 3 ~~~~~~~~~~i~g~l~~v~si~~~~splp~~~~-i~--k~kst~~~s~~p~~~~~~n~~lW~~YG~-l~~d----~~~i~ 74 (208)
++.++......+.-.|.-.+..+++.-.|+-.+ +. .-|++|=++.+|++.+......+-.-+- +..+ ....-
T Consensus 254 i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk 333 (466)
T KOG2532|consen 254 ILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK 333 (466)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH
Confidence 445566666666667777777788888888765 22 3466777889999988877766655542 2221 01123
Q ss_pred hhhhHHHHHHHHHHhhHhhcccchhHHHHHHHHHHHHHHHHHHHHhhhhee--ec-chhHHHHhhhhHHHHHHHHHhhcc
Q 028502 75 TINAFGCVIETIYLALYITFAPKQARLYTLRLLLLLNFGGFGSILLLSHFL--AK-GSAARLRLLGWVCVVFSVSVFAAP 151 (208)
Q Consensus 75 ~~N~~g~~l~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~~~~~~G~~~~~~~i~~~~sP 151 (208)
.-|.++.....+.+..-. |.++.++...+..+.. ..+..+ .....++. .. .++-..-.+|..-.+.++..+.+|
T Consensus 334 ifn~i~~~~~ai~l~~l~-~~~~~~~~~a~~~l~~-~~~~~g-~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P 410 (466)
T KOG2532|consen 334 IFNTIAFGGPAVFLLVLA-FTSDEHRLLAVILLTI-AIGLSG-FNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAP 410 (466)
T ss_pred HHHhHHHHHHHHHHHeee-ecCCCcchHHHHHHHH-HHHHcc-cchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888887776544 4443333211111110 000000 00001111 11 343445567887888888888888
Q ss_pred hhhhhHHhhcCCCCccChHHHHHHHHHHHHHHHHhh
Q 028502 152 LSIMRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGL 187 (208)
Q Consensus 152 L~~i~~vi~tk~~~~i~~~~~~~~~~~~~~W~~YG~ 187 (208)
+.. ..+.++++.+.=..-..+...+..+....|-+
T Consensus 411 ~~v-g~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 411 LLV-GIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred Hhe-eeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 654 44444443333333333333333333344433
No 32
>KOG3106 consensus ER lumen protein retaining receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.95 E-value=2e+02 Score=23.84 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=32.5
Q ss_pred cchhhhhHHhhcCCCCccChH----HHHHHHHHHHHHHHHhhhcCCeeEEechHHHH
Q 028502 150 APLSIMRLVVRTKSVEFMPFY----LSLFLTLNAVMWFFYGLFLKDVYVAVSSFLAQ 202 (208)
Q Consensus 150 sPL~~i~~vi~tk~~~~i~~~----~~~~~~~~~~~W~~YG~~~~D~~i~~pN~~g~ 202 (208)
|=|||++...|++.+|.+--. +-+.=++-+.-|. |-...+|.+-.++=..|.
T Consensus 130 aILPQL~~lq~tg~~E~~TahYvfaLG~yR~ly~~~WI-~r~~~e~~~~~iai~agi 185 (212)
T KOG3106|consen 130 AILPQLFMLQKTGEAETITAHYLFALGLYRALYIANWI-YRYVTEDFWDPIAIVAGI 185 (212)
T ss_pred HHhHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH-HHHHhhccccchHHHHHH
Confidence 458999999999999999744 3344455555564 333445544444444443
No 33
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=38.58 E-value=60 Score=17.63 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=13.6
Q ss_pred HHHhcHHHHHHHHHhcC
Q 028502 25 VFLAPMPTFYRVCKKKS 41 (208)
Q Consensus 25 ~~~splp~~~~i~k~ks 41 (208)
.....+|++..++|+|.
T Consensus 8 vla~~LP~lISWIK~kr 24 (26)
T PF01372_consen 8 VLATGLPTLISWIKNKR 24 (26)
T ss_dssp HHHTHHHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHh
Confidence 34568999999999874
No 34
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=35.32 E-value=1.7e+02 Score=21.15 Aligned_cols=63 Identities=14% Similarity=0.123 Sum_probs=42.7
Q ss_pred HHHHHhcCCCCccchhHHHHHHHHHHHHHHHhhccCcceeehhhhHHHHHHHHHHhhHhhcccch
Q 028502 34 YRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAPKQ 98 (208)
Q Consensus 34 ~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~~~~~~~y~~~~ 98 (208)
.-|.|++.. +-+.+|.+...+...+=..+..+.+|.. +.---..|.+.+..-..++=.++++.
T Consensus 23 q~IkkT~~v-~~K~iPlIs~viGilLG~~~~~~~~~~~-l~~~~~aG~laGlAaTGL~e~~t~r~ 85 (93)
T PF06946_consen 23 QAIKKTKVV-PNKWIPLISVVIGILLGAAAYPLTGDGN-LALMAWAGGLAGLAATGLFEQFTNRS 85 (93)
T ss_pred HHHHHhccC-CcchhhHHHHHHHHHHHHHhhhcCCCcc-HHHHHHHHHHhhhhhhhHHHHHHhhh
Confidence 334444433 4468999988888888888888887763 22223458888888888877776543
No 35
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=34.81 E-value=98 Score=26.49 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=44.1
Q ss_pred HHhhhhHHHHHHHHHhhcchhhhhHHhhcC------CCCccC--hHHHHHHH-HHHHHHHHHhhhcCCeeEEech
Q 028502 133 LRLLGWVCVVFSVSVFAAPLSIMRLVVRTK------SVEFMP--FYLSLFLT-LNAVMWFFYGLFLKDVYVAVSS 198 (208)
Q Consensus 133 ~~~~G~~~~~~~i~~~~sPL~~i~~vi~tk------~~~~i~--~~~~~~~~-~~~~~W~~YG~~~~D~~i~~pN 198 (208)
++++|...++++=++|++-+.=+..+.++. +.+.++ +.-....+ .+.+.+.+|.+..+|.+-.-||
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNKPKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 478999999999999996544444444333 456665 33334444 4556677999998888766666
No 36
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=32.57 E-value=3.1e+02 Score=26.63 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHH-HHHHHHHHHHHHHhhccCcceeehhhhHHHHHHHHH
Q 028502 9 PSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYV-VALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIY 87 (208)
Q Consensus 9 ~~~~i~g~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~-~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~ 87 (208)
....++|.+|- +....=-+-|-..-.|+|.+ .=|..|+ .++..+.+=+.|++..+|+. .+..++.|.+...=-
T Consensus 138 ~~~~~~G~~~q---~~f~~Rf~~Qw~~se~~~~s--~~p~~FW~~s~~G~~~~l~Y~i~r~dpv-~i~g~~~g~~~y~rn 211 (608)
T PRK01021 138 LSWHLIGCIGL---TIFSLRFFIQWFYLEYNNQS--ALPALFWKASLLGGSLALLYFIRTGDPV-NILCYGCGLFPSLAN 211 (608)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHhHHHHHHHHHHhCCce-EEEccccchhHHHHH
Confidence 33444454444 33333344444444444433 3366665 88899999999999999996 467899999887665
Q ss_pred HhhH
Q 028502 88 LALY 91 (208)
Q Consensus 88 ~~~~ 91 (208)
+.+.
T Consensus 212 l~li 215 (608)
T PRK01021 212 LRIA 215 (608)
T ss_pred HHHH
Confidence 5433
No 37
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=26.41 E-value=3e+02 Score=23.31 Aligned_cols=20 Identities=5% Similarity=0.084 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhcHHHHH
Q 028502 15 GLLGNIVSFIVFLAPMPTFY 34 (208)
Q Consensus 15 g~l~~v~si~~~~splp~~~ 34 (208)
..++..-.+..++...+.+.
T Consensus 40 ~~l~~~~~~G~~~G~~~G~l 59 (250)
T PF06813_consen 40 NTLSTAGDIGSYFGILAGLL 59 (250)
T ss_pred HHHHHHHHHHhhccHHHHHH
Confidence 33444444444444444433
No 38
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=26.12 E-value=4.7e+02 Score=23.30 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcHHHHHHH-HHhcCCCCccchhHHHHHHHHHHHHHHHhhccC--------cceeehhhhHHHHHHHH
Q 028502 16 LLGNIVSFIVFLAPMPTFYRV-CKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKD--------AFLLITINAFGCVIETI 86 (208)
Q Consensus 16 ~l~~v~si~~~~splp~~~~i-~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d--------~~~i~~~N~~g~~l~~~ 86 (208)
++=.++.+.+.++-+..+.|+ .|+|...-....-+.++.+...+|..+-+...| ..| ...-.+-..+++.
T Consensus 165 v~~lis~~~l~l~qvqiv~rlF~R~~eK~~i~~vG~~L~i~~~il~ai~~f~~~~~~~~~~~~~lp-~~~yl~~ial~~~ 243 (348)
T PF08733_consen 165 VIDLISNFFLQLAQVQIVIRLFPRQKEKRIIFWVGFILIILDQILWAINQFSYFDSDPNSFLDILP-AFSYLFRIALSTL 243 (348)
T ss_pred eHHHHHHHHHHHHHHHHHHHhhcccCcEEEEeeHHHHHHHHHHHHHHHHHhccCCCCccccccchH-HHHHHHHHHHHHH
Confidence 344456777888899999999 777776666777888899999999999865532 223 2345666666666
Q ss_pred HHhhHhhcccchhH
Q 028502 87 YLALYITFAPKQAR 100 (208)
Q Consensus 87 ~~~~~~~y~~~~~~ 100 (208)
|...-..|.-.|+|
T Consensus 244 ya~~v~~y~~~k~k 257 (348)
T PF08733_consen 244 YAAWVIYYIISKKK 257 (348)
T ss_pred HHHHHHHHHHhhhh
Confidence 65444444433333
No 39
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=24.93 E-value=7.6e+02 Score=25.26 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhcc
Q 028502 53 ALFSAMLWIYYAMMKK 68 (208)
Q Consensus 53 ~~~n~~lW~~YG~l~~ 68 (208)
..+.|.+|.+|=.+-+
T Consensus 88 I~~~~l~W~lYfav~~ 103 (1318)
T KOG3618|consen 88 IGFACLLWSLYFAVHM 103 (1318)
T ss_pred HHHHHHHHHHHheecc
Confidence 3467899999986543
No 40
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=24.17 E-value=1.9e+02 Score=24.71 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHhcC---CCCccchhHHH------HHHHHHHHHHHHhhccCcceeehhh
Q 028502 11 VFAFGLLGNIVSFIVFLAPMPTFYRVCKKKS---TEGFQSLPYVV------ALFSAMLWIYYAMMKKDAFLLITIN 77 (208)
Q Consensus 11 ~~i~g~l~~v~si~~~~splp~~~~i~k~ks---t~~~s~~p~~~------~~~n~~lW~~YG~l~~d~~~i~~~N 77 (208)
..++|++..+.+=++|-+-+--+.-++.+.+ ..+-+.+.|+. .+.++..++.|....+|. |-+.+|
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt~~F~~Y~~~~rn~-P~v~p~ 254 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTSTVYFVIYCIIKRNK-PKVYPN 254 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHHHHHHHHHHhhcCC-CCCCCC
Confidence 4677887777666666665555554544441 22233444443 335778888898877775 334554
No 41
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=24.05 E-value=2.3e+02 Score=25.19 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHhhccCcceeehhhhHHHHHHHHHHhhHhhcccch
Q 028502 49 PYVVALFSAMLWIYYAMMKKDAFLLITINAFGCVIETIYLALYITFAPKQ 98 (208)
Q Consensus 49 p~~~~~~n~~lW~~YG~l~~d~~~i~~~N~~g~~l~~~~~~~~~~y~~~~ 98 (208)
|......-+..|--|....+... ++..|..|..++..-.+.++.+++.+
T Consensus 245 PPa~~~Gi~la~g~~~~a~ga~~-L~~~Nl~~I~la~~~vf~~~g~~p~~ 293 (325)
T TIGR00341 245 PPAVATGILLVISPLPLAVKSLI-LTLINVAGLMAGSLAGVYVYGIRAYR 293 (325)
T ss_pred chHHHHHHHHHhccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 33444444555555555566654 67899999999988777666666543
No 42
>PRK11387 S-methylmethionine transporter; Provisional
Probab=22.83 E-value=5.3e+02 Score=23.45 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=7.7
Q ss_pred HHHHHHHHhcHHHHHHHHH
Q 028502 20 IVSFIVFLAPMPTFYRVCK 38 (208)
Q Consensus 20 v~si~~~~splp~~~~i~k 38 (208)
...+..+..+.-...+.+|
T Consensus 373 ~~~li~y~~~~~~~i~lr~ 391 (471)
T PRK11387 373 FAVVAVWLSICASHFMFRR 391 (471)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333
No 43
>PRK10580 proY putative proline-specific permease; Provisional
Probab=22.28 E-value=5.9e+02 Score=23.03 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhcHHHHHHHHHh
Q 028502 15 GLLGNIVSFIVFLAPMPTFYRVCKK 39 (208)
Q Consensus 15 g~l~~v~si~~~~splp~~~~i~k~ 39 (208)
.-++....+..+..+.....+.+|+
T Consensus 361 ~~~~~~~~~~~y~~~~~~~~~lr~~ 385 (457)
T PRK10580 361 ASLATFATVWVWIMILLSQIAFRRR 385 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555544
No 44
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=21.67 E-value=2.3e+02 Score=23.84 Aligned_cols=56 Identities=7% Similarity=0.017 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHH-HHHHH
Q 028502 6 THDPSVFAFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFS-AMLWI 61 (208)
Q Consensus 6 ~~~~~~~i~g~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n-~~lW~ 61 (208)
|++....++|+.+.+-+-.|-.-.=-.+++.+.+.+-||.+-.....+++| |..|+
T Consensus 127 DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~ 183 (290)
T KOG4314|consen 127 DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISF 183 (290)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhh
No 45
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=21.24 E-value=5.4e+02 Score=22.22 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhcc----CcceeehhhhHHHHHHHHHHhh
Q 028502 50 YVVALFSAMLWIYYAMMKK----DAFLLITINAFGCVIETIYLAL 90 (208)
Q Consensus 50 ~~~~~~n~~lW~~YG~l~~----d~~~i~~~N~~g~~l~~~~~~~ 90 (208)
.....++...+..|..+.+ |..-.+.|.++|++++..-...
T Consensus 140 i~~Ll~stigy~~Y~~~~~~~~~~~~~~~lPqaiGm~i~a~i~~~ 184 (269)
T PF06800_consen 140 ILALLISTIGYWIYSVIPKAFHVSGWSAFLPQAIGMLIGAFIFNL 184 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHHHHhh
Confidence 4577788999999997643 4334678999999998755444
No 46
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.94 E-value=49 Score=24.70 Aligned_cols=43 Identities=21% Similarity=0.406 Sum_probs=35.8
Q ss_pred cCCCCccChHHHHHHHHHHHHHHHHhhhc--CCeeEEechHHHHH
Q 028502 161 TKSVEFMPFYLSLFLTLNAVMWFFYGLFL--KDVYVAVSSFLAQI 203 (208)
Q Consensus 161 tk~~~~i~~~~~~~~~~~~~~W~~YG~~~--~D~~i~~pN~~g~~ 203 (208)
.|..|.++....++-+..++.|+=|.+.+ +|+++.-.|+.=.+
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~ 87 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAI 87 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHH
Confidence 57788999999999999999999999987 78888777765433
No 47
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=20.65 E-value=2.6e+02 Score=25.69 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHhhccC-cceeehhhhHHHHHHHHH
Q 028502 17 LGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIYYAMMKKD-AFLLITINAFGCVIETIY 87 (208)
Q Consensus 17 l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l~~d-~~~i~~~N~~g~~l~~~~ 87 (208)
++..-++.=+++-=.++.-++|+||.+++|.-..+.-+++.+.=++|=+ .+| ...|.+++++|+++..+=
T Consensus 305 vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL~-D~~ts~lil~~~gig~~ie~WK 375 (438)
T PF05602_consen 305 VSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYLL-DNETSWLILVPSGIGLLIEAWK 375 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeEE-eCCCcEEeehHhHhHHhHhhee
Confidence 3344566677888889999999999999997776666666666555533 223 335789999999998763
No 48
>PRK12612 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=20.45 E-value=3.2e+02 Score=19.23 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=9.3
Q ss_pred HHhcHHHHHHHHHhcCCCC
Q 028502 26 FLAPMPTFYRVCKKKSTEG 44 (208)
Q Consensus 26 ~~splp~~~~i~k~kst~~ 44 (208)
..+-+....|..|.++..|
T Consensus 14 ~~~~~l~~~Rl~~GPt~~D 32 (87)
T PRK12612 14 LLVILLALVLIIRTKDILT 32 (87)
T ss_pred HHHHHHHHHHHHcCcChhh
Confidence 3344444555555555543
Done!