Query 028502
Match_columns 208
No_of_seqs 163 out of 1388
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 20:51:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1afo_A Glycophorin A; integral 20.0 1.3E+02 0.0044 17.4 3.3 26 4-29 7-32 (40)
2 2nr1_A NR1 M2, M2; receptor, s 15.7 61 0.0021 17.2 1.1 13 177-189 9-21 (27)
3 3qrx_B Melittin; calcium-bindi 11.0 1.5E+02 0.0051 15.3 1.7 15 27-41 10-24 (26)
4 3bkd_A Transmembrane domain of 9.6 36 0.0012 17.7 -1.0 14 190-203 2-15 (26)
5 3bz1_X Photosystem II PSBX pro 6.7 2.3E+02 0.0079 17.2 1.6 23 162-184 5-27 (50)
6 4djk_A Probable glutamate/gamm 6.6 1.1E+03 0.038 19.8 8.9 19 22-40 378-396 (511)
7 2ljb_A M2 protein, BM2 protein 5.5 81 0.0028 17.6 -0.9 14 190-203 6-19 (35)
8 3dad_A FH1/FH2 domain-containi 5.4 4.2E+02 0.014 22.5 3.1 32 150-181 254-285 (339)
9 2b2h_A AMT-1, ammonium transpo 5.3 1.5E+02 0.0051 25.9 0.2 31 36-66 30-60 (399)
10 3gia_A Uncharacterized protein 4.9 1.2E+03 0.043 18.9 6.0 9 77-85 376-384 (444)
No 1
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=19.98 E-value=1.3e+02 Score=17.39 Aligned_cols=26 Identities=19% Similarity=0.561 Sum_probs=20.1
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHhc
Q 028502 4 FSTHDPSVFAFGLLGNIVSFIVFLAP 29 (208)
Q Consensus 4 ~~~~~~~~~i~g~l~~v~si~~~~sp 29 (208)
|+++.....++++++-+....++.|.
T Consensus 7 fs~p~i~lII~~vmaGiIG~IllI~y 32 (40)
T 1afo_A 7 FSEPEITLIIFGVMAGVIGTILLISY 32 (40)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 67777788888888888887776654
No 2
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=15.73 E-value=61 Score=17.17 Aligned_cols=13 Identities=46% Similarity=1.211 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhhc
Q 028502 177 LNAVMWFFYGLFL 189 (208)
Q Consensus 177 ~~~~~W~~YG~~~ 189 (208)
+.+.+|+.+|.+.
T Consensus 9 l~aa~wF~WGvll 21 (27)
T 2nr1_A 9 LSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhe
Confidence 4577899999875
No 3
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=10.97 E-value=1.5e+02 Score=15.25 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=11.9
Q ss_pred HhcHHHHHHHHHhcC
Q 028502 27 LAPMPTFYRVCKKKS 41 (208)
Q Consensus 27 ~splp~~~~i~k~ks 41 (208)
...+|.+..++|+|.
T Consensus 10 a~~LP~liSWiK~kr 24 (26)
T 3qrx_B 10 TTGLPALISWIKRKR 24 (26)
T ss_pred HccchHHHHHHHHHh
Confidence 457889999998875
No 4
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=9.61 E-value=36 Score=17.67 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=10.4
Q ss_pred CCeeEEechHHHHH
Q 028502 190 KDVYVAVSSFLAQI 203 (208)
Q Consensus 190 ~D~~i~~pN~~g~~ 203 (208)
+|+.+...|.+|..
T Consensus 2 sDplv~aa~iiGil 15 (26)
T 3bkd_A 2 SDPLVVAASIMGIL 15 (26)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHH
Confidence 57777778888864
No 5
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=6.74 E-value=2.3e+02 Score=17.17 Aligned_cols=23 Identities=13% Similarity=-0.149 Sum_probs=12.9
Q ss_pred CCCCccChHHHHHHHHHHHHHHH
Q 028502 162 KSVEFMPFYLSLFLTLNAVMWFF 184 (208)
Q Consensus 162 k~~~~i~~~~~~~~~~~~~~W~~ 184 (208)
.+..-+-..+++.+|+.++.|-.
T Consensus 5 ~~~~l~~mTpSL~NFl~SlvaG~ 27 (50)
T 3bz1_X 5 ASSLLLTITPSLKGFFIGLLSGA 27 (50)
T ss_dssp ------CCCHHHHHHHHHHHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHHHHH
Confidence 33333445677888888888864
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=6.55 E-value=1.1e+03 Score=19.76 Aligned_cols=19 Identities=5% Similarity=0.125 Sum_probs=8.1
Q ss_pred HHHHHHhcHHHHHHHHHhc
Q 028502 22 SFIVFLAPMPTFYRVCKKK 40 (208)
Q Consensus 22 si~~~~splp~~~~i~k~k 40 (208)
....|..+.....+.+|++
T Consensus 378 ~~~~y~~~~~~~~~~r~~~ 396 (511)
T 4djk_A 378 YLCAYFMLFIGYIVLVLKH 396 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3334444444444444443
No 7
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=5.50 E-value=81 Score=17.59 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=9.8
Q ss_pred CCeeEEechHHHHH
Q 028502 190 KDVYVAVSSFLAQI 203 (208)
Q Consensus 190 ~D~~i~~pN~~g~~ 203 (208)
+|+.+...|.+|.+
T Consensus 6 sDplviaA~IigiL 19 (35)
T 2ljb_A 6 SDPLVVAASIIGIL 19 (35)
T ss_dssp CCTHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 56777777777764
No 8
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=5.40 E-value=4.2e+02 Score=22.46 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=28.2
Q ss_pred cchhhhhHHhhcCCCCccChHHHHHHHHHHHH
Q 028502 150 APLSIMRLVVRTKSVEFMPFYLSLFLTLNAVM 181 (208)
Q Consensus 150 sPL~~i~~vi~tk~~~~i~~~~~~~~~~~~~~ 181 (208)
-|++.+-+.+++|+.......+..++++|..+
T Consensus 254 ~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL 285 (339)
T 3dad_A 254 PPWANLVSILEEKNGADPELLVYTVTLINKTL 285 (339)
T ss_dssp CTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999899999999999774
No 9
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=5.34 E-value=1.5e+02 Score=25.85 Aligned_cols=31 Identities=19% Similarity=0.684 Sum_probs=24.2
Q ss_pred HHHhcCCCCccchhHHHHHHHHHHHHHHHhh
Q 028502 36 VCKKKSTEGFQSLPYVVALFSAMLWIYYAMM 66 (208)
Q Consensus 36 i~k~kst~~~s~~p~~~~~~n~~lW~~YG~l 66 (208)
..|+|++-+.-...+....+.+..|..+|+-
T Consensus 30 ~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~ 60 (399)
T 2b2h_A 30 MVRRKNAVNMIALSFISLIITVLLWIFYGYS 60 (399)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888777666777888899999998863
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=4.94 E-value=1.2e+03 Score=18.93 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=3.8
Q ss_pred hhHHHHHHH
Q 028502 77 NAFGCVIET 85 (208)
Q Consensus 77 N~~g~~l~~ 85 (208)
+.+|...+.
T Consensus 376 ~~~~~~~~~ 384 (444)
T 3gia_A 376 VIFSFIVVL 384 (444)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
Done!