Query 028502
Match_columns 208
No_of_seqs 163 out of 1388
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 20:51:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028502.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028502hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 14.2 92 0.0067 16.3 3.2 16 152-167 18-33 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 5.5 2.2E+02 0.016 15.4 2.4 11 153-163 18-28 (45)
3 d1xioa_ f.13.1.1 (A:) Sensory 5.2 4.9E+02 0.036 18.1 9.3 33 155-188 150-182 (226)
4 d2axti1 f.23.37.1 (I:1-35) Pho 4.6 1.2E+02 0.0091 15.5 0.8 10 183-192 19-28 (35)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 4.1 2.6E+02 0.019 13.4 2.0 14 80-93 11-24 (30)
6 d1rzhh2 f.23.10.1 (H:11-35) Ph 3.6 2.8E+02 0.02 12.9 2.0 9 57-65 5-13 (26)
7 d1te7a_ b.122.1.7 (A:) Hypothe 3.0 2E+02 0.014 18.4 0.9 11 151-161 77-87 (103)
8 d1rh5b_ f.23.28.1 (B:) Preprot 2.9 4.4E+02 0.032 14.7 2.4 18 14-33 37-54 (56)
9 d1xmea1 f.24.1.1 (A:14-562) Ba 2.9 1.1E+03 0.083 18.7 8.0 49 13-61 133-181 (549)
10 d1vi0a2 a.121.1.1 (A:78-194) H 2.7 5.7E+02 0.042 14.8 4.5 35 155-189 57-92 (117)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.24 E-value=92 Score=16.33 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=10.6
Q ss_pred hhhhhHHhhcCCCCcc
Q 028502 152 LSIMRLVVRTKSVEFM 167 (208)
Q Consensus 152 L~~i~~vi~tk~~~~i 167 (208)
+.|+--|+|+|..|-+
T Consensus 18 laQi~lVlKKKQ~EkV 33 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKV 33 (37)
T ss_dssp HHHHHHHHHTGGGCTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677777777766644
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.51 E-value=2.2e+02 Score=15.36 Aligned_cols=11 Identities=27% Similarity=0.437 Sum_probs=4.6
Q ss_pred hhhhHHhhcCC
Q 028502 153 SIMRLVVRTKS 163 (208)
Q Consensus 153 ~~i~~vi~tk~ 163 (208)
+|+--|+|+|.
T Consensus 18 aQi~LVLKKKQ 28 (45)
T d1q90a3 18 TQVLLVLKKKQ 28 (45)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 3
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=5.22 E-value=4.9e+02 Score=18.11 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=18.3
Q ss_pred hhHHhhcCCCCccChHHHHHHHHHHHHHHHHhhh
Q 028502 155 MRLVVRTKSVEFMPFYLSLFLTLNAVMWFFYGLF 188 (208)
Q Consensus 155 i~~vi~tk~~~~i~~~~~~~~~~~~~~W~~YG~~ 188 (208)
.++..++++.+. .........+..+.|.+|++.
T Consensus 150 ~~~~~~~~~~~~-~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 150 LRAKTRTQSSEL-ANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp HHHHHTTSCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444332 223333445667799999985
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.63 E-value=1.2e+02 Score=15.47 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=7.0
Q ss_pred HHHhhhcCCe
Q 028502 183 FFYGLFLKDV 192 (208)
Q Consensus 183 ~~YG~~~~D~ 192 (208)
.++|++.+|+
T Consensus 19 FiFGFLSnDP 28 (35)
T d2axti1 19 FVFGFLSGDP 28 (35)
T ss_dssp HHHHHHTTCT
T ss_pred HHHhhccCCC
Confidence 4677777775
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.14 E-value=2.6e+02 Score=13.36 Aligned_cols=14 Identities=21% Similarity=0.880 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhHhh
Q 028502 80 GCVIETIYLALYIT 93 (208)
Q Consensus 80 g~~l~~~~~~~~~~ 93 (208)
.++++.++..+|++
T Consensus 11 ac~i~lfffaiffr 24 (30)
T d2axtt1 11 ACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhc
Confidence 33344444444443
No 6
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.61 E-value=2.8e+02 Score=12.94 Aligned_cols=9 Identities=0% Similarity=0.490 Sum_probs=4.3
Q ss_pred HHHHHHHHh
Q 028502 57 AMLWIYYAM 65 (208)
Q Consensus 57 ~~lW~~YG~ 65 (208)
..+|..|++
T Consensus 5 laiw~fw~f 13 (26)
T d1rzhh2 5 LAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555543
No 7
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=2.96 E-value=2e+02 Score=18.45 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=8.7
Q ss_pred chhhhhHHhhc
Q 028502 151 PLSIMRLVVRT 161 (208)
Q Consensus 151 PL~~i~~vi~t 161 (208)
||+++|++||.
T Consensus 77 ~L~eLK~vI~e 87 (103)
T d1te7a_ 77 TLTELKKVIAD 87 (103)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 68888888874
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.91 E-value=4.4e+02 Score=14.72 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhcHHHH
Q 028502 14 FGLLGNIVSFIVFLAPMPTF 33 (208)
Q Consensus 14 ~g~l~~v~si~~~~splp~~ 33 (208)
+|.+|.+.-+.+ .|++.+
T Consensus 37 ~G~IGf~I~li~--~~i~~i 54 (56)
T d1rh5b_ 37 LGIIGYIIHVPA--TYIKGI 54 (56)
T ss_dssp HHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHH--HHhhhh
Confidence 444444444333 455544
No 9
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=2.85 E-value=1.1e+03 Score=18.68 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHhcCCCCccchhHHHHHHHHHHHH
Q 028502 13 AFGLLGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWI 61 (208)
Q Consensus 13 i~g~l~~v~si~~~~splp~~~~i~k~kst~~~s~~p~~~~~~n~~lW~ 61 (208)
.+|..-.+.+......-.-++.+.+|++..++..|+..........+|.
T Consensus 133 ~ig~~l~vv~~~~~i~~~~t~~~~r~~~~~~~~~Pl~~~~~~~~~~l~~ 181 (549)
T d1xmea1 133 YLGASVFVLSTWVSIYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWF 181 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTCCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHH
Confidence 3343333334433344456666777777777766666666665555554
No 10
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=2.72 E-value=5.7e+02 Score=14.81 Aligned_cols=35 Identities=3% Similarity=-0.001 Sum_probs=26.7
Q ss_pred hhHHhhcCCCC-ccChHHHHHHHHHHHHHHHHhhhc
Q 028502 155 MRLVVRTKSVE-FMPFYLSLFLTLNAVMWFFYGLFL 189 (208)
Q Consensus 155 i~~vi~tk~~~-~i~~~~~~~~~~~~~~W~~YG~~~ 189 (208)
+++-+++..-. .+|.......++..+.|..|-+..
T Consensus 57 i~~g~~~G~ir~d~d~~~~a~~i~g~i~~~~~~w~~ 92 (117)
T d1vi0a2 57 LTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWVM 92 (117)
T ss_dssp HHHHHHTTCBCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777774 689999999999999898764444
Done!