BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028504
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=VTE2-1 PE=2 SV=1
Length = 393
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 126/193 (65%), Gaps = 1/193 (0%)
Query: 9 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 68
DAFYR +RP++ + + ++LSVS L ++ +D +P L + +V A+MMN Y +NQ
Sbjct: 98 DAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQ 157
Query: 69 LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 128
L+DV IDKVNKPYLPLA G++S+ G+AI + +M+ +G ++ S PL + ++G
Sbjct: 158 LSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLG 217
Query: 129 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 188
AYSI+L PLLRWK L+AA+ I+++ +++ F++H Q V G P+ FT+P++F A
Sbjct: 218 TAYSINL-PLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATA 276
Query: 189 YMVIWNAAIAFVK 201
+M ++ IA K
Sbjct: 277 FMSFFSVVIALFK 289
>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT1 PE=2 SV=1
Length = 404
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 122/198 (61%), Gaps = 1/198 (0%)
Query: 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYA 63
++ DAFYR +RP++ + +++SVSLL +++ +D +P + + +V A+ MN Y
Sbjct: 104 ISSSLDAFYRFSRPHTVIGTALSIVSVSLLAVENLSDVSPLFLTGLLEAVVAALFMNIYI 163
Query: 64 NAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFII 123
+NQL D+ IDKVNKP LPLA G++S G+A+ A M+ +G + S PL + I
Sbjct: 164 VGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFI 223
Query: 124 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPV 183
I+G AYSI+L P LRWK + ++AA+ I+++ +++ FF+H Q V P FT+P+
Sbjct: 224 SFILGTAYSINL-PFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPL 282
Query: 184 LFTAAYMVIWNAAIAFVK 201
+F A+M ++ IA K
Sbjct: 283 IFATAFMTFFSVVIALFK 300
>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1
SV=1
Length = 409
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 1/193 (0%)
Query: 9 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 68
AFY + PY+ + I S SLL ++ +D + +I + ++P + + Y +NQ
Sbjct: 114 SAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQ 173
Query: 69 LADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 128
L D+ IDK+NKP+LP+A G FS G+ I+ A ++ + S PL+ ++
Sbjct: 174 LYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSW 233
Query: 129 GAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAA 188
AYSID+ PLLRWK P +AA+ +IS L L +F H Q +VL P+ F + + F A
Sbjct: 234 TAYSIDV-PLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLGFLVA 292
Query: 189 YMVIWNAAIAFVK 201
+M ++ +A K
Sbjct: 293 FMTFYSLGLALSK 305
>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora
flavescens GN=N8DT-1 PE=1 SV=1
Length = 410
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 1/198 (0%)
Query: 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYA 63
+N D FY+ RPY+ +I+ SL+ ++ +D + I + +V I ++ +
Sbjct: 110 VNDALDIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFG 169
Query: 64 NAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFII 123
+NQL D+ IDK+NKP LPLA G S + IT +S ++ + ++ S PL I
Sbjct: 170 VGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFI 229
Query: 124 WCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPV 183
C+V AY++DL PLLRWK P++ A+ I+ + FF+H Q V P F +P+
Sbjct: 230 SCMVASAYNVDL-PLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPL 288
Query: 184 LFTAAYMVIWNAAIAFVK 201
+F A + I+ IA K
Sbjct: 289 IFCTAIVSIYAIVIALFK 306
>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT2 PE=3 SV=2
Length = 379
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 9/203 (4%)
Query: 2 QVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLP---LQSPADFTPKLIIEAFKCMVPAIM 58
+ L+ D+ +R RP++ AL S++L+ +++P L+ +AF +V I
Sbjct: 78 KTLSDLKDSCWRFLRPHTIRG--TALGSIALVARALIENPQLINWWLVFKAFYGLVALIC 135
Query: 59 MNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLV 118
N Y INQ+ D+ IDKVNKPYLP+A GD S+ + + ++ + P +
Sbjct: 136 GNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTNFGPFIT 195
Query: 119 IGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVA 178
+ + +G YS+ P R K P+ A + I ++ G LL F + + + LG
Sbjct: 196 SLYCLGLFLGTIYSV---PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAALGLTFQ 251
Query: 179 FTKPVLFTAAYMVIWNAAIAFVK 201
++ PV F ++ ++ IA K
Sbjct: 252 WSSPVAFITCFVTLFALVIAITK 274
>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=HPT2 PE=2 SV=1
Length = 386
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 25/204 (12%)
Query: 9 DAFYRLTRPYSCVSIIAALLSVSLLP---LQSPADFTPKLIIEAFKCMVPAIMMNNYANA 65
+A +R RP++ AL S +L+ +++ L+++A ++ I N Y
Sbjct: 92 NACWRFLRPHTIRG--TALGSTALVTRALIENTHLIKWSLVLKALSGLLALICGNGYIVG 149
Query: 66 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 125
INQ+ D+ IDKVNKPYLP+A GD S+ + I A+A G+ LV+GF
Sbjct: 150 INQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVI---FFAIA-GL------LVVGFNFGP 199
Query: 126 IVGGAYSIDL--------PPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPV 177
+ YS+ L PP LR K P+ A + I ++ G LL F + H + LG P
Sbjct: 200 FITSLYSLGLFLGTIYSVPP-LRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPF 257
Query: 178 AFTKPVLFTAAYMVIWNAAIAFVK 201
++ PV F +++ ++ IA K
Sbjct: 258 QWSAPVAFITSFVTLFALVIAITK 281
>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum
cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1
Length = 281
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 7 KCDAFYRLTRPYSCV-SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANA 65
K A+ ++RP + + SI+ L + S + + +LI+ C++P +++ NA
Sbjct: 3 KLGAYVEISRPKNALMSILGTLTGW----VNSTSVYDGRLILA---CLIPPLVLMA-GNA 54
Query: 66 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 125
IN D ID +NKPY P+ G S E L I IA L +A+ I L GFI +
Sbjct: 55 INDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSLFGIALSIFL-------GFIEFL 107
Query: 126 IVGGAYSIDLPPLLRW 141
IV A+S+ RW
Sbjct: 108 IV-TAFSLSWYAYARW 122
>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=ubiA-2 PE=1 SV=1
Length = 282
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 66 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWC 125
IN + DV IDK+NKPY P+ G S+ + A++IA ++ +A+ I+L LVI +
Sbjct: 56 INDVYDVEIDKINKPYRPIPSGKISVNKAKALSIALFIIGIALSILLNIYALVIALV--T 113
Query: 126 IVGGAYSIDLPPLLRWKGNPLMAAVTIISM 155
+G Y + GN L+A T +S+
Sbjct: 114 AIGLIYYAKDLKKTGFYGNLLVATTTALSI 143
>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
GN=Memar_1697 PE=3 SV=1
Length = 279
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 9 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 68
AF R+TRP++ +++A L ++ + + P L++ ++ A N IN
Sbjct: 4 SAFIRITRPHN--AVVAGLTALIGYLIATGTLTPPSLLLAVIVALITA-----GGNVIND 56
Query: 69 LADVHIDKVNKPYLPLACGDFSM 91
+ DV ID++N+P P+ GD S+
Sbjct: 57 VRDVEIDRINRPDRPIPAGDISL 79
>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1
Length = 276
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 7 KCDAFYRLTRPYSCV-SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANA 65
+ AF +TRP++C+ + I LL S++ L D PK + F + N
Sbjct: 2 ELKAFIEITRPHNCILAGIVGLLG-SIVALGHFPD--PKTALLIFLVVTVGCAGGN---T 55
Query: 66 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAV--AMGIMLRSPPLVIGFII 123
IN D IDK+N+P PL G +MG +A+ + L AV A+ M+ ++G I
Sbjct: 56 INDYFDYEIDKINRPERPLPRG--AMGRKVALYYSMLLFAVGLALAYMINIYAFILGVIA 113
Query: 124 WCIVGGAYSIDLPPLLRWKGNPLMAAVT 151
+ + Y+ L P L + GN ++A +T
Sbjct: 114 YVTM-FIYAWKLKP-LPFVGNIVVAGLT 139
>sp|Q57727|DGGGP_METJA Digeranylgeranylglyceryl phosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0279 PE=3 SV=1
Length = 283
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 1 MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMN 60
M V +K + L R +C++ + L+ D L++ V A
Sbjct: 1 MGVFMEKLKTYLELIRVKNCITASIGGIIGYLISSNFEIDILKSLLVFFVVFFVCA---- 56
Query: 61 NYANAINQLADVHIDKVNKPYLPLACGDFSMGE 93
Y N IN + D+ ID++NKP PL G + E
Sbjct: 57 -YGNVINDIFDIEIDRINKPSRPLPSGKIKLNE 88
>sp|Q46BD9|DGGGP_METBF Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=Mbar_A1863 PE=3
SV=1
Length = 289
Score = 38.5 bits (88), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 22 SIIAALLSVSLLPLQSPADFTPKL--IIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK 79
+II L++ ++L +P+ ++P + + + ++ NAIN DV ID +N+
Sbjct: 24 AIIGTLIAFNILTSNAPSSYSPGEFPLFSSVLIFLAVFLVAGAGNAINDYFDVRIDSINR 83
Query: 80 PYLPLACGDFSMGEGL 95
P P+ G + E L
Sbjct: 84 PDRPIPSGRMKLKEAL 99
>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4
SV=1
Length = 304
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 63 ANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRS 114
+ A N D H+D +N+P+ P+ G GL I IA L+++ +G L S
Sbjct: 68 SQAANDWCDRHVDAINEPHRPIPSGRIPGLWGLYIAIAMSLLSLVVGWQLGS 119
>sp|A4YI21|DGGGP_METS5 Digeranylgeranylglyceryl phosphate synthase OS=Metallosphaera
sedula (strain ATCC 51363 / DSM 5348) GN=Msed_1933 PE=3
SV=1
Length = 284
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 63 ANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFI 122
NAIN + DV ID++NKP P+ G S+ A +++ LM V G++L + + F+
Sbjct: 51 GNAINDVYDVEIDRINKPDRPIPSGAVSLRT--ATSLSYGLMGV--GVILSALQGYLQFL 106
Query: 123 IWCIVGGA---YSIDLPPLLRWKGNPLMAAVTIISM 155
+ + A Y+ DL + GN ++A T +S+
Sbjct: 107 VALLTSVALIFYARDLKRTGIY-GNLVVATATALSL 141
>sp|A9A8Y7|DGGGP_METM6 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_0995
PE=3 SV=1
Length = 278
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 62 YANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIML 112
+ NA+N + D+ IDK+NKP P+ S+GE I S L+ V MG+++
Sbjct: 53 FGNALNDIYDLKIDKINKPKRPIPSKRISLGEA---RIFSYLL-VVMGLII 99
>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
PE=2 SV=1
Length = 387
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 41 FTPKLIIEAFKCMV-PAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGE 93
+TP+ + ++ CM+ + Y IN D ID +N+PY P+ G S E
Sbjct: 128 WTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISEPE 181
>sp|Q971A3|DGGGP_SULTO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_14510 PE=3 SV=1
Length = 278
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 66 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVI 119
IN + D+ IDK+NKP PL G + +++I L+ + + ++L +I
Sbjct: 56 INDVFDIEIDKINKPNRPLPSGRIKISRARSLSIVLFLVGIVLSVLLNIYAFII 109
>sp|A6UVU6|DGGGP_META3 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1040
PE=3 SV=1
Length = 279
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 4 LNKKCDAFYRLTRPYSCVS-----IIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIM 58
+N K + L R +C++ II L++ ++F LI + +
Sbjct: 1 MNLKIKYYLELIRVKNCLTASFGTIIGGLIA---------SNFNFGLIGYILLASLIVFL 51
Query: 59 MNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVA 107
+ + NA+N + D+ IDK+NKP PL S+ TI S L+ ++
Sbjct: 52 VCGFGNALNDIQDIEIDKINKPNRPLPSNKISLKSA---TIFSYLLMIS 97
>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3
SV=1
Length = 267
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 13 RLTRPYSCVSIIAALLS---VSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQL 69
+ RP +CV AA L+ VS LQS TP L+ A +++ NAIN
Sbjct: 5 EIMRPANCVMAGAASLTGMLVSGALLQSL--HTPVLVFSAV------LLITGGGNAINDY 56
Query: 70 ADVHIDKVNKPYLPLACGDFS 90
D ID VN+P P+ G S
Sbjct: 57 FDREIDAVNRPDRPIPSGRIS 77
>sp|Q5JDN5|DGGGP_PYRKO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1957 PE=3 SV=1
Length = 277
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 9 DAFYRLTRPYSC-----VSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYA 63
AF +TRP++C V ++ ++++ LP A ++ C
Sbjct: 4 KAFIEITRPHNCLLAGIVGVLGSIVAAGGLPELKTAILV--FLVVFLGC--------AGG 53
Query: 64 NAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIA 100
N IN D IDK+N+P PL G S L ++A
Sbjct: 54 NTINDYFDYEIDKINRPERPLPRGAMSRKAALWYSVA 90
>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=bchG PE=4 SV=1
Length = 302
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 63 ANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFI 122
+ A N D H+D VN+P P+ G GL I + ++++A+G ML P G
Sbjct: 67 SQAANNWCDRHVDAVNEPDRPIPSGRIPGRWGLYIALLMTVLSLAVGWMLG--PWGFGAT 124
Query: 123 IWCIVGG-AYSIDLPPLLR--WKGNPLMA 148
++ ++ AYS++ L R W G L+A
Sbjct: 125 VFGVLAAWAYSVEPIRLKRSGWWGPGLVA 153
>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1
Length = 281
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 58 MMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGL 95
++ N +N D+ IDKVNKP P+ G S+ L
Sbjct: 54 LVTGAGNGLNDYFDIEIDKVNKPSRPIPSGKISLKSAL 91
>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1764 PE=3 SV=1
Length = 276
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 7 KCDAFYRLTRPYSCVSIIAALLSV--SLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYAN 64
+ AF +TRP++C +A L+ V S++ L S + K++I F +V ++ N
Sbjct: 2 ELRAFVEITRPHNCA--LAGLVGVLGSMVALGSVPE--GKILILVF--LVVSLGCAG-GN 54
Query: 65 AINQLADVHIDKVNKPYLPLACG 87
IN D ID++N+P PL G
Sbjct: 55 TINDYFDYEIDRINRPERPLPRG 77
>sp|Q9V2P5|DGGGP_PYRAB Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB00300 PE=3 SV=2
Length = 277
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 24/145 (16%)
Query: 7 KCDAFYRLTRPYSC-----VSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNN 61
+ AF + RP++C V I+ +L++ +P S ++ C +
Sbjct: 2 EVKAFIEIMRPHNCILAGVVGILGSLVAYEGIP--SIEKLGLVFLVVYLGC--------S 51
Query: 62 YANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGF 121
N IN DV ID+VN+P P+ G L + ++ +A+ L L+
Sbjct: 52 AGNTINDYFDVEIDRVNRPNRPIPRGAIPRKVALYYALLQYMLGLALARFLGVEALLFAL 111
Query: 122 IIWCIVGGAYSIDLPPLLRWKGNPL 146
GAY++ + WK PL
Sbjct: 112 -------GAYALTF--IYAWKLKPL 127
>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica
GN=CHLG PE=2 SV=1
Length = 376
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 41 FTPKLIIEAFKCMV-PAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGE 93
+T + + ++ CM+ + Y IN D ID +N+PY P+ G S E
Sbjct: 117 WTVEDVAKSIVCMIMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISENE 170
>sp|O57753|DGGGP_PYRHO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH0027 PE=3 SV=1
Length = 277
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 23/88 (26%)
Query: 9 DAFYRLTRPYSC-----VSIIAALLSVSLLPLQSPADFTPKLI----IEAFKCMVPAIMM 59
AF + RP++C V I+ +L++ +P P KLI + F C
Sbjct: 4 KAFVEIMRPHNCILAGIVGILGSLVAYEGIP---PVQ---KLILIFLVVYFGC------- 50
Query: 60 NNYANAINQLADVHIDKVNKPYLPLACG 87
+ N IN DV IDK+N+P P+ G
Sbjct: 51 -SAGNTINDYFDVEIDKINRPNRPIPRG 77
>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1
SV=1
Length = 378
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 41 FTPKLIIEAFKCMV-PAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGE 93
+T + + ++ CM+ + Y IN D ID +N+PY P+ G S E
Sbjct: 119 WTVEDVTKSIVCMLMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISENE 172
>sp|A8GZR0|UBIA_SHEPA 4-hydroxybenzoate octaprenyltransferase OS=Shewanella pealeana
(strain ATCC 700345 / ANG-SQ1) GN=ubiA PE=3 SV=1
Length = 288
Score = 33.5 bits (75), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 17/157 (10%)
Query: 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKL------IIEAFKCMVPAI 57
L K D + RL R + + LL L+ L A P L +I F
Sbjct: 3 LRDKLDVYMRLARMDRPIGTLL-LLWPCLMALTFAAGGLPDLKVFIIFVIGVFSMRACGC 61
Query: 58 MMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPL 117
++N+YA+ + D H+++ PLA G+ S E L + + L + + +ML PL
Sbjct: 62 IINDYAD---RKLDAHVERTKGR--PLASGEVSSKEALLLFVVMALFSFGLVLMLN--PL 114
Query: 118 VIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIIS 154
V+ ++G +I P R+ P M T+ S
Sbjct: 115 VVQL---SVIGIILTIIYPFTKRYTNMPQMFLGTVWS 148
>sp|Q8TS44|DGGGP_METAC Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_0961 PE=3 SV=1
Length = 289
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 11 FYRLTRPYSCV-----SIIAALLSVSLL---PLQSPADFT-PKLIIEAFKCMVPAIMMNN 61
+ L R +C+ ++I L++ ++L PL S +FT P ++A + +++
Sbjct: 8 YLELMRYGNCLMAGFAAVIGTLIAFNILTSGPLSS--NFTGPFPFLDAGFVFLVVFLVSG 65
Query: 62 YANAINQLADVHIDKVNKPYLPLACGDFSMGEGL 95
NAIN D+ ID +N+P P+ G E L
Sbjct: 66 AGNAINDYFDIKIDSINRPERPIPSGRVQAKEAL 99
>sp|Q9ZSR7|TPT_ARATH Triose phosphate/phosphate translocator TPT, chloroplastic
OS=Arabidopsis thaliana GN=TPT PE=2 SV=1
Length = 410
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Query: 2 QVLNKKCDAF----YRLTRPYSCVSIIAALLSVSL-LPLQSPADFTP-KLIIEAFKCMVP 55
+LNKK + Y ++ + V ++ L+S S+ LP ++P D K++I C
Sbjct: 123 NILNKKIYNYFPYPYFVSVIHLFVGVVYCLISWSVGLPKRAPIDSNLLKVLIPVAVCHAL 182
Query: 56 AIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRS 114
+ +N + A ++ H K +P+ A F MG+ + IT+ L V +G+ + S
Sbjct: 183 GHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFIMGQSIPITLWLSLAPVVLGVAMAS 241
>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0795 PE=3 SV=1
Length = 282
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 63 ANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVA-MGIMLRSPPLVIGF 121
N +N D+ IDKVN+P P+ G SP AV GI+ + F
Sbjct: 51 GNVLNDYFDLEIDKVNRPDRPIPSGK-----------VSPKGAVVWAGILFAAGVAAACF 99
Query: 122 I-IWCIVGGAYSIDLPPLL--RWKGNPLMAAVTIISMNGLLLLFPFFI 166
IWC+ ++ L + ++KG P + +++ ++G + LF F+
Sbjct: 100 TNIWCLAIALVNVVLLIIYAAKFKGIPFLGNLSVAYLSGSIFLFGGFL 147
>sp|A6VHU1|DGGGP_METM7 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0950
PE=3 SV=1
Length = 278
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 28/124 (22%)
Query: 10 AFYRLTRPYSCVS-----IIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYAN 64
A++ L R +C++ I L++ S L + D I+ C + N
Sbjct: 5 AYFELIRLKNCLTASFGAFIGGLIA-SYFNLATVYDLILASIVVFLVC--------GFGN 55
Query: 65 AINQLADVHIDKVNKPYLPLACGDFSMGE-----------GLAITI---ASPLMAVAMGI 110
A+N + D+ IDK+NKP P+ S+ + GL I++ A LMAV I
Sbjct: 56 ALNDIYDLKIDKINKPERPIPSKRLSLTDARVFSYLLVFVGLFISLFNMACFLMAVLNSI 115
Query: 111 MLRS 114
+L+
Sbjct: 116 VLQQ 119
>sp|C6A2C9|DGGGP_THESM Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=TSIB_0711 PE=3
SV=1
Length = 279
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 19/90 (21%)
Query: 7 KCDAFYRLTRPYSC-----VSIIAALLSVSLLPLQSPADFTPKLIIEAF-KCMVPAIMMN 60
KC F + RP +C V I+ A +++ LP P + + + F +C
Sbjct: 4 KC--FIEILRPINCLIAGLVGILGATVALGHLP---PIKTSLLIFLVVFLEC-------- 50
Query: 61 NYANAINQLADVHIDKVNKPYLPLACGDFS 90
++ N IN D IDK+N+P PL G S
Sbjct: 51 SWGNIINDYFDYEIDKINRPNRPLPRGALS 80
>sp|Q8PV96|DGGGP_METMA Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2075 PE=3 SV=2
Length = 289
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 58 MMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPL 117
+++ NAIN D+ ID +N+P P+ G E A +L +
Sbjct: 62 LVSGAGNAINDYFDIKIDSINRPERPIPSGRVKAKE-----------AFYFSYLLFALGT 110
Query: 118 VIGFIIWCIVGGAYSIDLPPLLRW----KGNPLMAAVTIISMNGLLLLF 162
+I F I I G + L+ + KG PL+ ++I + G + LF
Sbjct: 111 LIAFSINSICGSIALFNSLLLILYAKTLKGTPLLGNLSIGYLTGSVFLF 159
>sp|Q8BKX6|SMG1_MOUSE Serine/threonine-protein kinase SMG1 OS=Mus musculus GN=Smg1 PE=1
SV=3
Length = 3658
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 22 SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMV------PAIMMNNYANAINQLADVHID 75
S + L+ SL + D TP+L+ + KC++ P I N+ + ++ L HID
Sbjct: 268 SSVMQLVMTSLQSILENVD-TPELLCKCVKCILLVARCYPHIFSTNFRDTVDILVGWHID 326
Query: 76 KVNKPYL 82
KP L
Sbjct: 327 HTQKPSL 333
>sp|Q96Q15|SMG1_HUMAN Serine/threonine-protein kinase SMG1 OS=Homo sapiens GN=SMG1 PE=1
SV=3
Length = 3661
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 22 SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMV------PAIMMNNYANAINQLADVHID 75
S + L+ SL + D TP+L+ + KC++ P I N+ + ++ L HID
Sbjct: 270 SSVMQLVMTSLQSILENVD-TPELLCKCVKCILLVARCYPHIFSTNFRDTVDILVGWHID 328
Query: 76 KVNKPYL 82
KP L
Sbjct: 329 HTQKPSL 335
>sp|A1S2M4|UBIA_SHEAM 4-hydroxybenzoate octaprenyltransferase OS=Shewanella amazonensis
(strain ATCC BAA-1098 / SB2B) GN=ubiA PE=3 SV=1
Length = 290
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 1 MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKL------IIEAFKCMV 54
M + +K DA+YRL R + + LL L+ L AD P L II
Sbjct: 1 MSKMAQKWDAYYRLMRLDRPIGTM-LLLWPCLMALLLAADGMPDLRVLIIFIIGVVVMRA 59
Query: 55 PAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMA 105
++N+YA ++ D H+ + PLA G+ ++ E L + + L A
Sbjct: 60 CGCIINDYA---DRKLDSHVARTRSR--PLASGEVTVAEALTLFVVLGLFA 105
>sp|A6UQV8|DGGGP_METVS Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224)
GN=Mevan_0977 PE=3 SV=1
Length = 278
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 62 YANAINQLADVHIDKVNKPYLPLACGDFSMGE 93
+ N++N + D+ ID++NKP+ P+ S+ +
Sbjct: 53 FGNSLNDIYDLKIDRINKPFRPIPSKRISLTD 84
>sp|Q2FN44|DGGGP_METHJ Digeranylgeranylglyceryl phosphate synthase OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=Mhun_0625 PE=3 SV=1
Length = 280
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 23/115 (20%)
Query: 10 AFYRLTRPYSCV-SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQ 68
A+ + RP + V + +A +L+ + PA+F F + + N IN
Sbjct: 5 AYLSIIRPVNAVVAGLAGILASIIATGSIPAEF--------FWIFCIVLTITGAGNVIND 56
Query: 69 LADVHIDKVNKPYLPLACGD-------------FSMGEGLAITIAS-PLMAVAMG 109
D ID +N+P P+ G F +G G+AI PL +AMG
Sbjct: 57 YYDKEIDAINQPDRPIPSGQIIPGHALMYAILLFLIGNGIAILFTPLPLAGIAMG 111
>sp|Q8TZM7|DGGGP_PYRFU Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 /
Vc1) GN=PF1963 PE=3 SV=1
Length = 277
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 15/89 (16%)
Query: 7 KCDAFYRLTRPYSC-----VSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNN 61
+ F + RP++C V I+ AL++ +P T + F C +
Sbjct: 2 EVKGFIEIMRPHNCILAGIVGILGALVAYEGIP--DIKTLTLIFWVVYFGC--------S 51
Query: 62 YANAINQLADVHIDKVNKPYLPLACGDFS 90
N N D IDK+N+P PL G S
Sbjct: 52 GGNTANDYFDYEIDKINRPNRPLPRGAMS 80
>sp|Q64TC3|Y2507_BACFR Uncharacterized transporter BF2507 OS=Bacteroides fragilis (strain
YCH46) GN=BF2507 PE=3 SV=1
Length = 562
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 51 KCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFS--MGEGLAITIASPLMAVAM 108
K + + NN+ ++ ++ +D V P L L GD +G LA++ A ++ +M
Sbjct: 317 KTLAQLKIRNNFGASVTRVNRSGVDLVASPQLQLQMGDRVTIVGSELAVSHAEKVLGNSM 376
Query: 109 GIMLRSP---PLVIGFIIWCIVGGA----YSIDLPPLLRWKGNPLMAAVTI 152
L P P+ +G + CI+G I P L G PL+ ++ I
Sbjct: 377 K-RLNHPNLIPIFLGIALGCILGSIPFMFPGIPQPVKLGLAGGPLIVSILI 426
>sp|P21727|TPT_PEA Triose phosphate/phosphate translocator, chloroplastic OS=Pisum
sativum PE=1 SV=1
Length = 402
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 1 MQVLNKKCDAF----YRLTRPYSCVSIIAALLSVSL-LPLQSPADFTP-KLIIEAFKCMV 54
+LNKK + Y ++ + V ++ L+S ++ LP ++P D KL+I C
Sbjct: 114 FNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWTVGLPKRAPIDGNLLKLLIPVAVCHA 173
Query: 55 PAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRS 114
+ +N + A ++ H K +P+ A F +G+ + IT+ L V +G+ + S
Sbjct: 174 LGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMAS 233
>sp|Q1GXB3|UBIA_METFK 4-hydroxybenzoate octaprenyltransferase OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=ubiA
PE=3 SV=1
Length = 296
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 4 LNKKCDAFYRLTRPYSCVSIIAALL-SVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNY 62
L +K +A+YRLTR + I+ L ++ + L SP + L++ F + ++M +
Sbjct: 6 LRQKLEAYYRLTRLDKPIGILLLLWPTLWGIWLASPG-WPDGLVLFVF--IAGTVLMRSA 62
Query: 63 ANAINQLADV----HIDKVNKPYLPLACGDFSMGE 93
+N LAD H+++ + PL GD + E
Sbjct: 63 GCVMNDLADRNFDGHVERTRQR--PLVTGDVTTKE 95
>sp|A5ULR8|DGGGP_METS3 Digeranylgeranylglyceryl phosphate synthase OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0941
PE=3 SV=1
Length = 283
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 22/110 (20%)
Query: 63 ANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFI 122
N IN D ID +NKP P+ G S+ A +L ++GF+
Sbjct: 48 GNVINDYFDYKIDLINKPQRPIPSGRISLDN-----------AKNYAYLLFILAAIVGFL 96
Query: 123 IWCIVGG-------AYSIDLPPLL---RWKGNPLMAAVTIISMNGLLLLF 162
I C+V +S D+ L + K PL+ +T+ M GL +F
Sbjct: 97 ISCLVDTWIPCTIVIFS-DIILYLYAYKLKSTPLIGNLTVGFMTGLCFIF 145
>sp|A4G0P3|DGGGP_METM5 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_1730
PE=3 SV=1
Length = 278
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 62 YANAINQLADVHIDKVNKPYLPL 84
+ NA+N + D+ ID++NKP P+
Sbjct: 53 FGNALNDIYDLKIDRINKPERPI 75
>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A
PE=3 SV=1
Length = 277
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 52 CMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIM 111
+V ++ NAIN D ID +N+P P+ G S L ++A L AVA+ +
Sbjct: 42 AVVATVLATGAGNAINDYFDRDIDAINEPDRPIPRGAVSPRGALVYSVA--LFAVAVVLT 99
Query: 112 LRSPPLVI 119
L P L I
Sbjct: 100 LLLPWLAI 107
>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1
Length = 275
Score = 30.8 bits (68), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 10/66 (15%)
Query: 66 INQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAV--AMGIMLRSPPLVI--GF 121
IN + D+ +DK+NKP PL G +A+ IA V A+G+++ P +I GF
Sbjct: 55 INDVYDIEVDKINKPERPLPSGR------IAVNIARRFSIVLFAVGLIISIPLGLIPFGF 108
Query: 122 IIWCIV 127
+ IV
Sbjct: 109 ALITIV 114
>sp|P11869|TPT_SPIOL Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia
oleracea PE=1 SV=1
Length = 404
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 2 QVLNKKCDAF----YRLTRPYSCVSIIAALLSVSL-LPLQSPADFTP-KLIIEAFKCMVP 55
+LNKK + Y ++ + V ++ L S S+ LP ++P D KL+I C
Sbjct: 117 NILNKKIYNYFPYPYFVSVIHLFVGVVYCLASWSVGLPKRAPMDSKLLKLLIPVAVCHAI 176
Query: 56 AIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRS 114
+ +N + A ++ H K +P+ A F +G+ + IT+ L V +G+ + S
Sbjct: 177 GHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQSIPITLWLSLAPVVIGVSMAS 235
>sp|Q6LWN2|DGGGP_METMP Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
maripaludis (strain S2 / LL) GN=MMP1677 PE=3 SV=1
Length = 278
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 62 YANAINQLADVHIDKVNKPYLPL 84
+ NA+N + D+ ID++NKP P+
Sbjct: 53 FGNALNDIYDLKIDRINKPKRPI 75
>sp|Q5R0Y6|CYOE_IDILO Protoheme IX farnesyltransferase OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=cyoE PE=3 SV=1
Length = 298
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 39/145 (26%)
Query: 49 AFKCMVPAI----MMNNYANAINQLADVHIDKVNKPYL--PLACGDFSMGEGLAITIASP 102
+ K +VPA+ +M+ A AIN L D HID L PL G+ S +
Sbjct: 49 SLKVLVPALTGIGLMSAAAAAINHLVDRHIDAKMARTLRRPLPQGNLSPAK-------VT 101
Query: 103 LMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF 162
A ++G VIGF+ L W NPL A +T SM G +++
Sbjct: 102 TFAASIG--------VIGFVT--------------LYAWV-NPLTAWLTFASMVGYAVVY 138
Query: 163 PFFIHF---QKIVLGNPVAFTKPVL 184
F+ Q IV+G P+L
Sbjct: 139 TMFLKRATPQNIVIGGLAGAAPPLL 163
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,415,434
Number of Sequences: 539616
Number of extensions: 2887384
Number of successful extensions: 7558
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 7514
Number of HSP's gapped (non-prelim): 70
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)