Query 028504
Match_columns 208
No_of_seqs 170 out of 1728
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 12:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 3.7E-35 8.1E-40 246.1 17.8 176 31-207 7-182 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 1.7E-34 3.7E-39 248.3 22.3 199 2-208 7-209 (308)
3 TIGR01476 chlor_syn_BchG bacte 100.0 2.5E-31 5.4E-36 226.5 18.5 186 9-208 1-188 (283)
4 PRK09573 (S)-2,3-di-O-geranylg 100.0 5.9E-31 1.3E-35 223.8 19.7 180 7-208 2-181 (279)
5 PRK07566 bacteriochlorophyll/c 100.0 8.2E-31 1.8E-35 226.3 20.4 192 5-208 24-216 (314)
6 PLN00012 chlorophyll synthetas 100.0 1.3E-30 2.8E-35 229.0 20.6 191 4-208 81-279 (375)
7 PRK12874 ubiA prenyltransferas 100.0 3E-30 6.5E-35 220.5 21.1 189 1-208 1-194 (291)
8 TIGR02056 ChlG chlorophyll syn 100.0 3.5E-30 7.7E-35 221.6 21.5 189 4-208 12-210 (306)
9 PRK12882 ubiA prenyltransferas 100.0 3E-30 6.5E-35 219.1 19.3 182 7-208 3-184 (276)
10 PRK12392 bacteriochlorophyll c 100.0 3.1E-29 6.8E-34 217.3 22.4 192 4-208 8-207 (331)
11 PRK12884 ubiA prenyltransferas 100.0 2.7E-29 6E-34 213.4 20.8 181 6-208 2-182 (279)
12 PRK12883 ubiA prenyltransferas 100.0 3.3E-29 7.1E-34 212.8 21.2 179 8-208 3-181 (277)
13 PRK13106 ubiA prenyltransferas 100.0 4E-29 8.7E-34 214.1 20.6 190 4-208 11-204 (300)
14 PRK12886 ubiA prenyltransferas 100.0 7.8E-29 1.7E-33 211.8 21.3 187 1-208 1-189 (291)
15 TIGR01475 ubiA_other putative 100.0 1.1E-28 2.5E-33 210.1 19.8 183 7-208 1-185 (282)
16 PRK12895 ubiA prenyltransferas 100.0 2.1E-28 4.7E-33 208.1 20.9 183 7-208 2-186 (286)
17 PRK12869 ubiA protoheme IX far 100.0 3.3E-28 7.2E-33 206.9 21.0 182 7-207 1-185 (279)
18 COG0382 UbiA 4-hydroxybenzoate 100.0 5E-28 1.1E-32 206.7 20.3 185 2-207 4-193 (289)
19 PRK12847 ubiA 4-hydroxybenzoat 100.0 9.5E-28 2.1E-32 204.7 21.3 185 4-208 3-192 (285)
20 PRK12870 ubiA 4-hydroxybenzoat 100.0 5.5E-28 1.2E-32 206.6 18.5 184 4-208 5-193 (290)
21 PRK05951 ubiA prenyltransferas 100.0 3.2E-27 6.9E-32 202.4 21.0 188 6-208 2-198 (296)
22 PRK04375 protoheme IX farnesyl 100.0 2.6E-27 5.6E-32 203.0 20.1 184 4-206 6-195 (296)
23 PRK13362 protoheme IX farnesyl 100.0 4.7E-27 1E-31 202.0 20.5 184 4-206 9-198 (306)
24 PRK12888 ubiA prenyltransferas 100.0 3.5E-27 7.5E-32 201.0 19.4 183 7-208 1-186 (284)
25 PRK12848 ubiA 4-hydroxybenzoat 100.0 6.5E-27 1.4E-31 199.3 20.6 183 5-208 2-189 (282)
26 PRK06080 1,4-dihydroxy-2-napht 100.0 8.5E-27 1.8E-31 199.4 20.7 185 8-208 3-195 (293)
27 PRK12324 phosphoribose diphosp 100.0 6.3E-27 1.4E-31 199.9 18.6 178 4-203 7-186 (295)
28 PRK13387 1,4-dihydroxy-2-napht 100.0 1.6E-26 3.5E-31 199.6 20.4 192 8-208 3-216 (317)
29 TIGR01473 cyoE_ctaB protoheme 99.9 3.3E-26 7.2E-31 194.7 19.3 148 9-167 1-151 (280)
30 PRK12878 ubiA 4-hydroxybenzoat 99.9 5.5E-26 1.2E-30 196.1 19.6 186 4-208 26-219 (314)
31 PRK13595 ubiA prenyltransferas 99.9 1.9E-25 4.2E-30 189.4 21.3 184 5-208 9-196 (292)
32 TIGR01474 ubiA_proteo 4-hydrox 99.9 1.4E-25 3.1E-30 190.9 19.9 180 9-208 2-187 (281)
33 PRK08238 hypothetical protein; 99.9 7E-26 1.5E-30 204.9 18.2 182 4-207 187-370 (479)
34 PRK12876 ubiA prenyltransferas 99.9 4.2E-25 9.2E-30 188.4 20.8 190 6-208 2-199 (300)
35 PLN02809 4-hydroxybenzoate non 99.9 6.2E-25 1.3E-29 187.5 20.1 187 4-208 2-193 (289)
36 COG0109 CyoE Polyprenyltransfe 99.9 1.6E-25 3.5E-30 188.9 11.8 184 4-204 14-204 (304)
37 PRK07419 1,4-dihydroxy-2-napht 99.9 4.5E-24 9.7E-29 183.2 20.4 188 4-208 8-201 (304)
38 TIGR00751 menA 1,4-dihydroxy-2 99.9 5.3E-24 1.1E-28 181.4 20.2 177 16-208 1-191 (284)
39 PRK12873 ubiA prenyltransferas 99.9 4.8E-24 1E-28 181.8 19.9 186 4-208 3-197 (294)
40 PRK13592 ubiA prenyltransferas 99.9 2.6E-24 5.7E-29 182.1 16.5 146 49-207 48-201 (299)
41 PLN02922 prenyltransferase 99.9 4.5E-23 9.7E-28 177.9 21.2 191 5-208 12-215 (315)
42 PRK12871 ubiA prenyltransferas 99.9 3.9E-23 8.5E-28 177.0 19.8 180 5-208 2-202 (297)
43 COG1575 MenA 1,4-dihydroxy-2-n 99.9 6.2E-23 1.3E-27 173.6 19.6 193 1-208 1-203 (303)
44 PLN02776 prenyltransferase 99.9 1.7E-22 3.6E-27 175.0 20.1 162 14-195 1-165 (341)
45 TIGR02235 menA_cyano-plnt 1,4- 99.9 2.9E-22 6.2E-27 170.8 20.5 181 11-208 2-188 (285)
46 PRK13105 ubiA prenyltransferas 99.9 3.3E-21 7.1E-26 163.8 20.5 181 8-208 1-187 (282)
47 PF01040 UbiA: UbiA prenyltran 99.9 3.9E-22 8.5E-27 166.2 13.7 169 22-208 3-173 (257)
48 PRK12872 ubiA prenyltransferas 99.9 5.3E-21 1.1E-25 162.9 16.9 185 6-208 2-188 (285)
49 PRK12875 ubiA prenyltransferas 99.9 3.6E-20 7.7E-25 157.6 20.1 183 3-208 3-192 (282)
50 PRK13591 ubiA prenyltransferas 99.8 3E-19 6.5E-24 152.4 19.8 139 54-208 65-206 (307)
51 KOG1381 Para-hydroxybenzoate-p 99.7 7.3E-17 1.6E-21 133.7 4.5 159 5-180 61-224 (353)
52 KOG1380 Heme A farnesyltransfe 99.5 5.6E-15 1.2E-19 125.1 0.6 148 6-167 92-242 (409)
53 KOG4581 Predicted membrane pro 98.7 7.6E-10 1.6E-14 90.4 -1.9 190 4-207 57-255 (359)
54 PRK12872 ubiA prenyltransferas 94.4 0.19 4.1E-06 42.6 7.5 34 55-88 169-203 (285)
55 PRK13591 ubiA prenyltransferas 94.2 0.31 6.7E-06 42.2 8.4 66 65-133 197-271 (307)
56 PRK13387 1,4-dihydroxy-2-napht 94.1 0.26 5.5E-06 42.9 7.9 51 53-106 195-246 (317)
57 TIGR01475 ubiA_other putative 93.3 0.77 1.7E-05 39.0 9.3 35 54-88 165-200 (282)
58 PRK07419 1,4-dihydroxy-2-napht 93.3 0.46 1E-05 41.1 7.9 46 57-105 184-230 (304)
59 TIGR01474 ubiA_proteo 4-hydrox 93.1 1.2 2.6E-05 38.0 10.1 37 54-90 167-204 (281)
60 PLN02922 prenyltransferase 92.6 0.68 1.5E-05 40.2 8.1 49 54-105 195-244 (315)
61 PRK13106 ubiA prenyltransferas 92.3 0.92 2E-05 39.2 8.5 49 54-102 184-233 (300)
62 PLN00012 chlorophyll synthetas 92.3 0.87 1.9E-05 40.6 8.4 33 57-89 262-295 (375)
63 COG1575 MenA 1,4-dihydroxy-2-n 91.9 1.1 2.4E-05 38.7 8.3 52 52-105 181-232 (303)
64 PRK12875 ubiA prenyltransferas 91.8 5.1 0.00011 34.3 12.4 54 55-111 173-227 (282)
65 PRK13105 ubiA prenyltransferas 91.7 0.96 2.1E-05 38.8 7.8 56 55-113 168-224 (282)
66 TIGR02235 menA_cyano-plnt 1,4- 91.5 1 2.2E-05 38.5 7.9 49 55-106 169-218 (285)
67 PRK09573 (S)-2,3-di-O-geranylg 91.4 1.1 2.3E-05 38.1 7.8 34 55-88 162-196 (279)
68 PRK07566 bacteriochlorophyll/c 91.2 1.6 3.4E-05 37.9 8.8 32 58-89 200-232 (314)
69 PRK12886 ubiA prenyltransferas 90.8 1.9 4.2E-05 36.9 8.9 35 55-89 170-205 (291)
70 PRK12392 bacteriochlorophyll c 90.8 0.81 1.8E-05 40.1 6.6 37 55-91 188-225 (331)
71 TIGR02056 ChlG chlorophyll syn 90.8 1.6 3.4E-05 37.7 8.3 44 57-103 193-237 (306)
72 PRK06080 1,4-dihydroxy-2-napht 90.5 1.2 2.6E-05 38.0 7.3 49 55-106 176-225 (293)
73 PRK12884 ubiA prenyltransferas 89.4 2.6 5.5E-05 35.6 8.4 34 55-88 163-197 (279)
74 TIGR01476 chlor_syn_BchG bacte 89.4 2.3 5E-05 36.1 8.1 31 58-88 172-203 (283)
75 PRK12847 ubiA 4-hydroxybenzoat 89.3 2.4 5.3E-05 36.1 8.2 36 54-89 172-208 (285)
76 PRK12848 ubiA 4-hydroxybenzoat 88.5 3 6.6E-05 35.5 8.3 37 54-90 169-206 (282)
77 PRK12888 ubiA prenyltransferas 88.5 3.2 7E-05 35.4 8.4 36 54-89 166-202 (284)
78 PRK12871 ubiA prenyltransferas 87.8 3.5 7.5E-05 35.5 8.3 36 54-89 182-218 (297)
79 PRK05951 ubiA prenyltransferas 87.7 13 0.00028 31.9 11.7 34 58-94 182-216 (296)
80 PRK11383 hypothetical protein; 87.6 8.4 0.00018 29.6 9.1 36 171-206 93-128 (145)
81 PRK12882 ubiA prenyltransferas 87.0 3.8 8.2E-05 34.6 8.0 32 57-88 167-199 (276)
82 PRK12883 ubiA prenyltransferas 86.5 3.7 8E-05 34.7 7.7 31 58-88 165-196 (277)
83 PRK12870 ubiA 4-hydroxybenzoat 86.3 4.2 9.1E-05 34.8 7.9 39 54-92 173-212 (290)
84 COG0382 UbiA 4-hydroxybenzoate 85.6 21 0.00046 30.3 17.6 72 3-80 8-85 (289)
85 TIGR00751 menA 1,4-dihydroxy-2 85.5 4.5 9.7E-05 34.6 7.6 46 57-105 174-220 (284)
86 PRK12887 ubiA tocopherol phyty 83.6 10 0.00022 32.8 9.1 34 55-88 190-224 (308)
87 PRK12874 ubiA prenyltransferas 83.5 19 0.00042 30.8 10.8 36 54-89 174-210 (291)
88 PRK12878 ubiA 4-hydroxybenzoat 78.9 14 0.0003 32.1 8.3 35 55-89 200-235 (314)
89 PF01040 UbiA: UbiA prenyltran 78.6 8.1 0.00018 31.6 6.6 22 57-78 156-177 (257)
90 PRK12876 ubiA prenyltransferas 78.5 43 0.00094 29.0 11.4 34 57-90 182-216 (300)
91 PRK12895 ubiA prenyltransferas 77.4 17 0.00037 31.2 8.3 35 54-88 166-201 (286)
92 PRK12873 ubiA prenyltransferas 70.6 69 0.0015 27.6 10.7 35 55-89 178-213 (294)
93 COG4147 DhlC Predicted symport 69.0 16 0.00035 33.7 6.4 97 50-161 356-459 (529)
94 PRK12869 ubiA protoheme IX far 68.4 19 0.00041 30.6 6.5 23 66-88 178-201 (279)
95 PLN02878 homogentisate phytylt 67.5 27 0.00059 29.9 7.2 45 57-104 166-211 (280)
96 PLN02809 4-hydroxybenzoate non 61.8 1E+02 0.0022 26.4 10.6 26 64-89 183-209 (289)
97 TIGR01473 cyoE_ctaB protoheme 61.7 41 0.0009 28.4 7.4 21 68-88 179-200 (280)
98 PRK13592 ubiA prenyltransferas 61.5 20 0.00044 31.0 5.3 27 182-208 47-73 (299)
99 PLN02776 prenyltransferase 60.8 1.2E+02 0.0026 26.8 10.3 63 70-133 174-241 (341)
100 COG4125 Predicted membrane pro 59.4 65 0.0014 24.7 7.1 51 63-113 53-104 (149)
101 PF05360 YiaAB: yiaA/B two hel 53.8 53 0.0012 20.6 6.3 31 175-205 23-53 (53)
102 PRK04375 protoheme IX farnesyl 53.4 1.1E+02 0.0024 26.1 8.7 34 55-88 175-209 (296)
103 PF04971 Lysis_S: Lysis protei 52.0 15 0.00032 24.6 2.3 29 51-79 36-64 (68)
104 PF07125 DUF1378: Protein of u 46.3 33 0.00072 21.9 3.1 24 53-76 14-38 (59)
105 PRK04214 rbn ribonuclease BN/u 44.1 2.4E+02 0.0052 25.3 11.6 17 57-73 115-131 (412)
106 PRK13595 ubiA prenyltransferas 41.0 1.2E+02 0.0026 26.2 6.8 54 57-113 179-233 (292)
107 PF10507 DUF2453: Protein of u 36.9 1.2E+02 0.0026 22.4 5.3 64 54-117 35-106 (111)
108 COG1295 Rbn Ribonuclease BN fa 36.6 2.7E+02 0.0059 23.8 11.9 10 126-136 203-212 (303)
109 COG3462 Predicted membrane pro 31.8 2.1E+02 0.0045 21.0 6.5 12 182-193 60-71 (117)
110 TIGR00267 conserved hypothetic 31.6 2.5E+02 0.0055 21.9 9.6 17 54-70 35-51 (169)
111 PF04547 Anoctamin: Calcium-ac 30.9 1.6E+02 0.0034 26.6 6.4 39 54-92 332-373 (452)
112 PRK10299 PhoPQ regulatory prot 29.9 89 0.0019 19.2 3.1 16 61-76 19-34 (47)
113 COG4682 Predicted membrane pro 29.5 2.4E+02 0.0053 21.1 6.2 19 187-206 110-128 (128)
114 COG2814 AraJ Arabinose efflux 29.3 4.3E+02 0.0093 23.8 11.8 79 86-167 72-161 (394)
115 PF11990 DUF3487: Protein of u 29.0 2.4E+02 0.0053 20.9 6.8 34 74-109 8-41 (121)
116 PF06738 DUF1212: Protein of u 27.0 1.5E+02 0.0032 23.2 5.0 30 95-124 106-135 (193)
117 TIGR03750 conj_TIGR03750 conju 26.0 2.7E+02 0.0058 20.4 6.9 34 74-109 5-38 (111)
118 PRK09442 panF sodium/panthothe 24.8 5.3E+02 0.011 23.4 14.4 14 59-72 341-354 (483)
119 PF06212 GRIM-19: GRIM-19 prot 23.5 1.4E+02 0.0031 22.5 3.9 34 135-169 15-51 (130)
120 COG1593 DctQ TRAP-type C4-dica 21.0 4.4E+02 0.0095 23.7 7.1 75 52-133 128-212 (379)
121 PF04284 DUF441: Protein of un 20.7 3.3E+02 0.007 20.9 5.4 15 81-95 58-72 (140)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=3.7e-35 Score=246.13 Aligned_cols=176 Identities=41% Similarity=0.760 Sum_probs=156.8
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHH
Q 028504 31 SLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGI 110 (208)
Q Consensus 31 ~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~ 110 (208)
++++.+..++.++..+..++.++++.++++.....+|||+|+|+||+|||+||+|||++|+++|+.+...+.++|+.+++
T Consensus 7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~ 86 (280)
T PLN02878 7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW 86 (280)
T ss_pred hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34454444455555566777888999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHH
Q 028504 111 MLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYM 190 (208)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (208)
.+|++++.+++..+++++++||..+| |+|+||.+++++.|+...++....+|+|.++++..+|++..++.++++...++
T Consensus 87 ~~g~~~l~~al~~~~~lg~~YS~~lp-~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~ 165 (280)
T PLN02878 87 IVGSWPLFWALFVSFVLGTAYSINLP-LLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFM 165 (280)
T ss_pred HHChHHHHHHHHHHHHHHHHHHccCC-CcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHH
Confidence 99998887777777679999997768 99999999999999999999889999999999999998877888888888899
Q ss_pred HHHHHHHHHhhcCCccc
Q 028504 191 VIWNAAIAFVKVTNSEI 207 (208)
Q Consensus 191 ~~~~~~~~~~k~~~D~~ 207 (208)
++++.+++++||+||+|
T Consensus 166 ~~f~~~i~i~KDi~Die 182 (280)
T PLN02878 166 CFFSVVIALFKDIPDVE 182 (280)
T ss_pred HHHHHHHHHHhhCcCch
Confidence 99999999999999998
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=1.7e-34 Score=248.31 Aligned_cols=199 Identities=29% Similarity=0.493 Sum_probs=162.2
Q ss_pred hhHHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhhcccc
Q 028504 2 QVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANA----INQLADVHIDKV 77 (208)
Q Consensus 2 ~~~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~----iNd~~D~~~D~~ 77 (208)
|+.++.+++|+|++|||+..++.++++.+.+++.....+ .+... .+...++.+.++.++|+ +|||+|+|+||+
T Consensus 7 ~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~-~~~~~--~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~i 83 (308)
T PRK12887 7 QPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSN-TIALA--NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRI 83 (308)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc-hhhHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhc
Confidence 445667899999999999999999998887766322121 11110 12233455566666666 999999999999
Q ss_pred CCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHh
Q 028504 78 NKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG 157 (208)
Q Consensus 78 ~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g 157 (208)
|||+||++||++|+++++.+..++.++|+.+++.+|++.+.++.+.. +++++||. | |+|+||+|..++++++...|
T Consensus 84 nkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~-~lg~~Ys~--p-P~rlKr~~~~~~~~i~~~~g 159 (308)
T PRK12887 84 NKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISL-LIGTAYSL--P-PIRLKRFPLLAALCIFTVRG 159 (308)
T ss_pred CCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHcC--C-chhhcccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877776655 69999999 8 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 158 LLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
..+.+|.+.++++. .+.+..++...++...++.++++++++.||++|+|+
T Consensus 160 ~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~eg 209 (308)
T PRK12887 160 VIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEG 209 (308)
T ss_pred HHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 99999998875543 344445677777888899999999999999999985
No 3
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.98 E-value=2.5e-31 Score=226.45 Aligned_cols=186 Identities=15% Similarity=0.126 Sum_probs=146.6
Q ss_pred HHHHhhhchhhHHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCC
Q 028504 9 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACG 87 (208)
Q Consensus 9 ~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG 87 (208)
|+|++++||+++..++.++++|..++.....+ +++ ...++.+++++.+.++++|++|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~--~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHW--WLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46899999999999999999999887432222 222 212233557889999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHH
Q 028504 88 DFSMGEGLAITIASPLMAVAMGIMLRSPP-LVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI 166 (208)
Q Consensus 88 ~is~~~a~~~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~ 166 (208)
++|+++++.++..+..+++.++..++.+. ..++.++. +.++.||. | |+++||++.+|++.++..++.....+.+.
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~-~~~~~Ys~--~-p~~lk~~~~~g~~~vg~~~~~~~~~~~~~ 154 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGI-VLAVIYSM--P-PIKLKRNGWLGPPAVGLSYEGLPWMAGHA 154 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhheecC--c-hhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887766 55554444 57999999 7 99999999999999888766544333332
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 167 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
. .+ + .+...++.....++++.+++++||+||+|+
T Consensus 155 ~-----~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~ 188 (283)
T TIGR01476 155 I-----FA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEG 188 (283)
T ss_pred H-----hC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 2 11 1 445555566777888999999999999986
No 4
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.98 E-value=5.9e-31 Score=223.78 Aligned_cols=180 Identities=18% Similarity=0.263 Sum_probs=146.0
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccC
Q 028504 7 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLAC 86 (208)
Q Consensus 7 ~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~s 86 (208)
++++|+|++||+++..+.++++.|..++.+. ..++. ..++.+++++++++++|++|||+|+|+||+|+|+||+||
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNF--KIDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccC--CcchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 3689999999999999999999998887542 22322 133456789999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHH
Q 028504 87 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI 166 (208)
Q Consensus 87 G~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~ 166 (208)
|++|++|++.++..+.++++.++..+|+.+..++.++. ...+.||. ++||++.+||+.++...|..+..|...
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~-~~~~~Ys~------~lKr~~~~~~~~vg~~~G~~~~~g~~~ 149 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNS-ILLYLYAK------DLKKTGLIGNLIVAYLTGLSFIFGGLA 149 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH------HHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887666 46889986 699999999999999999876666533
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 167 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
. +. . .+.+++.....++..++++.||.+|+|+
T Consensus 150 ~-~~-----~----~~~~~l~~~~f~~~~~~~~~~~~~D~~~ 181 (279)
T PRK09573 150 V-FN-----V----LRIIILFLCAFFSTWSREIVKDIEDIEG 181 (279)
T ss_pred H-cc-----c----hHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 2 11 1 1222233444567778999999999985
No 5
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.98 E-value=8.2e-31 Score=226.25 Aligned_cols=192 Identities=16% Similarity=0.167 Sum_probs=151.5
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCc
Q 028504 5 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLII-EAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLP 83 (208)
Q Consensus 5 ~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~-~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RP 83 (208)
++++++|++++||+++..++++...|+..+.. .++...... ..+..++++.+.++++|++|||+|+|+||+|+|+||
T Consensus 24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp 101 (314)
T PRK07566 24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP 101 (314)
T ss_pred chHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence 35789999999999999999988888775432 222221111 122345678889999999999999999999999999
Q ss_pred ccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHH
Q 028504 84 LACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP 163 (208)
Q Consensus 84 l~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g 163 (208)
++||++|+++++.++.++..+++.+++.+|++...+++++. +.+++||. | |+++||++.+||+.++..+|..+..+
T Consensus 102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~-~~~~~Yt~--g-P~~lK~~~~~g~i~vg~~~g~~~~~~ 177 (314)
T PRK07566 102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGL-FLAWIYSA--P-PLRLKQNGWLGNYAVGLSYEGLPWWA 177 (314)
T ss_pred CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH-HHHHHhcC--C-ccccccccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999989988887776655 47899999 6 89999999999999999887665555
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 164 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.+...++ ...+...++.....+++..++.++||++|+|+
T Consensus 178 g~~~~~~------~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~ 216 (314)
T PRK07566 178 GAAAFGA------GLPSWPIVILALLYSLGAHGIMTLNDFKSVEG 216 (314)
T ss_pred HHHHhcc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 4443221 12345555666777788889999999999985
No 6
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.97 E-value=1.3e-30 Score=228.98 Aligned_cols=191 Identities=18% Similarity=0.182 Sum_probs=146.0
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCC
Q 028504 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKL-IIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYL 82 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~-~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~R 82 (208)
.++++|+|++++||+++..+++++++|+... ++ .++.... ....+..++++.++++++|++|||+|+|+|++|+|+|
T Consensus 81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~-~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~R 158 (375)
T PLN00012 81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GN-FHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYR 158 (375)
T ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CC-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCC
Confidence 4578899999999999999999999998843 21 1222111 1112345678889999999999999999999999999
Q ss_pred cccCCccCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504 83 PLACGDFSMGEGLAITIASPLMAVAMGIML-------RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 155 (208)
Q Consensus 83 Pl~sG~is~~~a~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~ 155 (208)
|+++|++|+++++..+..+..+++.+++++ |++.+++++++. +..++||. | |+++||++++||+.++..
T Consensus 159 pi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi-~l~~~YS~--p-Pl~lKr~~~~G~v~lG~~ 234 (375)
T PLN00012 159 PIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGS-LLSYIYSA--P-PLKLKQNGWIGNYALGAS 234 (375)
T ss_pred CcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHhhhhcC--C-chhhhHhccHhHHHHHHH
Confidence 999999999999998888888777776554 344555555555 57999999 7 999999999999998888
Q ss_pred HhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 156 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 156 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
++.++.++.+. ..| .++...+++..+.++++.+++++||++|+|+
T Consensus 235 ~~~lp~~~g~a-----~~g---~~s~~~illal~~~l~~lai~ivnd~~Die~ 279 (375)
T PLN00012 235 YISLPWWAGQA-----LFG---TLTPDVVVLTLLYSIAGLGIAIVNDFKSIEG 279 (375)
T ss_pred HHHHHHHHHHH-----HcC---CCCHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 87655444331 112 2445555566777889999999999999985
No 7
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=3e-30 Score=220.48 Aligned_cols=189 Identities=19% Similarity=0.194 Sum_probs=151.5
Q ss_pred ChhHHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 028504 1 MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQS---PADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV 77 (208)
Q Consensus 1 ~~~~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~---~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~ 77 (208)
|||.++++|+|+|++||++...++...+.|.+++... ....++. ..++.++++.++++++|++|||+|+|+|++
T Consensus 1 ~~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~ 77 (291)
T PRK12874 1 MKKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKD 77 (291)
T ss_pred CchHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccC
Confidence 7899999999999999999999999999998887521 1123332 234556788999999999999999999999
Q ss_pred CC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504 78 NK--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 155 (208)
Q Consensus 78 ~~--~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~ 155 (208)
|+ |+||+|||++|++||+.++..+.++++.+++.+|+.+..+++... .+...|+. +||++.++++..+..
T Consensus 78 ~~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~-~~~~~Y~~-------~KR~t~~~~~~~g~~ 149 (291)
T PRK12874 78 NPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFL-IVLGGYSY-------FKRFSSLAHLVLGLS 149 (291)
T ss_pred CCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhh-------hcccccccHHHHHHH
Confidence 86 799999999999999999999998888888888988887775444 57888975 899999999999998
Q ss_pred HhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 156 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 156 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.|..+..|.... ++. .+.+.+++.+.+.+|..+.++.|+++|+|+
T Consensus 150 ~~~~~l~G~~av------~g~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~ 194 (291)
T PRK12874 150 LGLAPIAGVVAV------LGE--IPLWSVFLALGVMFWVAGFDLLYSLQDMEF 194 (291)
T ss_pred HHHHHHHHHHHH------cCC--CcHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 886665554322 222 233334455667899999999999999884
No 8
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.97 E-value=3.5e-30 Score=221.58 Aligned_cols=189 Identities=19% Similarity=0.240 Sum_probs=147.5
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCC
Q 028504 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKL---IIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKP 80 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~---~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~ 80 (208)
.++++|+|+|++||+++..++++++.|...+ + ++++.. ....+..++++.++++++|++|||+|+|+|++|+|
T Consensus 12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~-~---~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~ 87 (306)
T TIGR02056 12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAAS-G---NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEP 87 (306)
T ss_pred chhHHHHHHHHcChHhhHHHHHHHHHHHHHc-C---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC
Confidence 3567899999999999999999999998754 2 232211 11122334677999999999999999999999999
Q ss_pred CCcccCCccCHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHH
Q 028504 81 YLPLACGDFSMGEGLAITIASPLMAVAMGIMLR-------SPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTII 153 (208)
Q Consensus 81 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~ 153 (208)
+||+++|++|+++++.++..+..+++.++.++. ++.+.+++++. +.+++||. | |+++||++.+|++.++
T Consensus 88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~-~~~~~Yt~--g-P~~lk~~g~~G~i~vg 163 (306)
T TIGR02056 88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGS-FIAFIYSA--P-PLKLKQNGWLGNFALG 163 (306)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH-HHHHHHcC--C-hhhhhhcccHHHHHHH
Confidence 999999999999999999999999988877653 34555665554 57999999 7 8999999999999888
Q ss_pred HHHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 154 SMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 154 ~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
..++..+..+.+.. .| .++...++.....++++.+++++||+||+|+
T Consensus 164 ~~~~~~~~~~~~a~-----~g---~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~ 210 (306)
T TIGR02056 164 ASYIALPWWAGHAL-----FG---ELNPDIAVLTLIYSIAGLGIAIVNDFKSVEG 210 (306)
T ss_pred HHHHHHHHHHHHHH-----hC---CCcHHHHHHHHHHHHHHHHHHHHHHccChHH
Confidence 88776555543321 12 2345555666777789999999999999986
No 9
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=3e-30 Score=219.09 Aligned_cols=182 Identities=21% Similarity=0.231 Sum_probs=144.0
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccC
Q 028504 7 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLAC 86 (208)
Q Consensus 7 ~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~s 86 (208)
++|+|+|++||++...+.++++.|++++.+. .++.. ..++.+++.+++++++|++|||+|+|+||+|+|+||+|+
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~---~~~~~--~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGI---LSSPS--LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchHH--HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 3789999999999999999999999888542 12111 123456789999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHH
Q 028504 87 GDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFI 166 (208)
Q Consensus 87 G~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~ 166 (208)
|++|++|++.++.++.++++.+++.+|+....++.... +..+.||. ++||++.+||+.++...|..+.+|...
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~-~~~~~Yt~------~lK~~~~~g~~~vg~~~g~~~~~g~~~ 150 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS-LLLVLYAE------TLKGTPGLGNASVAYLTGSTFLFGGAA 150 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH------HHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988887776665 46889987 799999999999988887665555422
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 167 HFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.+... ....+.+.....++..+.++.||++|+|+
T Consensus 151 ------~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~ 184 (276)
T PRK12882 151 ------VGTEG--LLALLVLFALAALATLAREIIKDVEDIEG 184 (276)
T ss_pred ------hcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 22111 11222333444556778999999999985
No 10
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.97 E-value=3.1e-29 Score=217.28 Aligned_cols=192 Identities=18% Similarity=0.250 Sum_probs=138.4
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCC
Q 028504 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSP-ADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYL 82 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~-~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~R 82 (208)
+++++|+|+|++||+++. ..++...|..+|.+.. +.... ....+....+.+.+.++++|++|||+|+|+|++|+|+|
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~-~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHD-YLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhH-HHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 567899999999999888 4455556666775321 12211 11111122334456667899999999999999999999
Q ss_pred cccCCccCHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504 83 PLACGDFSMGEGLAITIASPLMAVAMGIMLRS-------PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 155 (208)
Q Consensus 83 Pl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~ 155 (208)
|+++|++|++|++.++..+..+++.++.+++. +......+.+.+.+++||. | |+++||+++.++..++..
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~-P~~lKr~~~~g~~~vGl~ 162 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--P-PLKLKKNILTSAPAVGFS 162 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--C-chhhhccchhHHHHHHHH
Confidence 99999999999999999999999988877643 2222322333468899999 7 999999999999988888
Q ss_pred HhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 156 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 156 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
++.....+... ..+ . .+.+.++.....++++.+.+++||++|+|+
T Consensus 163 ~~~~~~~~~~a-----~~g-~--~~~~~~~l~~~~~l~~~~~~~i~d~~D~eg 207 (331)
T PRK12392 163 YGFITFLSANA-----LFS-D--IRPEVVWLAGLNFFMAIALIIMNDFKSVEG 207 (331)
T ss_pred HHHHHHHHHHH-----Hhc-C--CCHHHHHHHHHHHHHHHHHHHHHcccchhh
Confidence 77544333211 222 2 344555566677888999999999999985
No 11
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=2.7e-29 Score=213.38 Aligned_cols=181 Identities=19% Similarity=0.315 Sum_probs=147.3
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccc
Q 028504 6 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLA 85 (208)
Q Consensus 6 ~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~ 85 (208)
+++++|+|++||+++..+.++++.|.+++.+. .++. ..++.+++.++.++++|++|||+|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~---~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGG---LPLD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC---CchH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 57899999999999999999999999888542 2221 12345678999999999999999999999999999999
Q ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHH
Q 028504 86 CGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF 165 (208)
Q Consensus 86 sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~ 165 (208)
+|++|+++++.++.++.++++.++..+|+....++.+.. +.++.||. ++||++.++++.++...|..+..|..
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~Ys~------~lK~~~~~~~~~~~~~~~~~~~~g~~ 148 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVS-VLGILYNW------KLKEYGLIGNLYVAFLTGMTFIFGGI 148 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH------hhccccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999889988887776655 57899987 69999999999999888765554543
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 166 IHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.. +.. +...+++.....++..+.++.||++|+|+
T Consensus 149 ~~------~~~---~~~~~~l~~~~~~~~~~~~~~~~~~D~e~ 182 (279)
T PRK12884 149 AV------GEL---NEAVILLAAMAFLMTLGREIMKDIEDVEG 182 (279)
T ss_pred Hh------CCC---chHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 21 221 12344455666778888999999999986
No 12
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.97 E-value=3.3e-29 Score=212.84 Aligned_cols=179 Identities=20% Similarity=0.243 Sum_probs=141.2
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCC
Q 028504 8 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACG 87 (208)
Q Consensus 8 ~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG 87 (208)
+|+|+|++||+++..+.++.+.|++++.++.+ ++.. .++.+++.++.++++|++|||+|+|+|++|+|+||+|+|
T Consensus 3 l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~--~~~~---~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG 77 (277)
T PRK12883 3 LKAFIEITRPHNCILAGIVGILGSLVALGGIP--PIKT---LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG 77 (277)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCC--cHHH---HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCC
Confidence 67899999999999999999999888743211 1211 223456888889999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHHH
Q 028504 88 DFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIH 167 (208)
Q Consensus 88 ~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~~ 167 (208)
++|+++++.++.++.++|+.+++.+|++.+.++..+. ..++.|+. ++||++.+||+.++...|..+..|....
T Consensus 78 ~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~-~~~~~Y~~------~~k~~~~lg~~~vg~~~g~~~~~g~~a~ 150 (277)
T PRK12883 78 AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAY-VLMFLYAW------KLKPLPFIGNVVVALLTGATPIYGAIAV 150 (277)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh------cccCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999889998887776665 57999987 6899998999999999997765554211
Q ss_pred HHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 168 FQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
+ . .+...+. ..+..++..++++.||++|+|+
T Consensus 151 ------~-~--~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~ 181 (277)
T PRK12883 151 ------G-R--IGLAGYL-AICAFLVNVAREIMKDIEDIEG 181 (277)
T ss_pred ------c-c--ccHHHHH-HHHHHHHHHHHHHHhhhhhhcc
Confidence 1 1 1222222 2234555678999999999985
No 13
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=4e-29 Score=214.08 Aligned_cols=190 Identities=14% Similarity=0.163 Sum_probs=145.8
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC--CCC
Q 028504 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPY 81 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~--~~~ 81 (208)
+++++++|+|++||++....+.+.+.|++++.++. .++.. .++..++++++++++|++|||+|+|+|++| +|+
T Consensus 11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~--~~~~~---l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~ 85 (300)
T PRK13106 11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGI--PPIST---LILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKN 85 (300)
T ss_pred hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCC
Confidence 56789999999999999999999999998886432 23222 234567999999999999999999999998 579
Q ss_pred CcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHH
Q 028504 82 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 161 (208)
Q Consensus 82 RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~ 161 (208)
||+|||++|++||+.+..++.+.++.++..+|+.+..++.... +....|+. .||++.++|+.++...|..+.
T Consensus 86 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~-~~~~~Y~~-------~KR~t~~~~~~lg~~~~~~~~ 157 (300)
T PRK13106 86 RPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVA-LIAMSYPY-------MKRYTAFANYHLASIQGLAVF 157 (300)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhH-------HhcCCcchHHHHHHHHHHHHH
Confidence 9999999999999999887777777778888988888776655 35677864 899999999999998887655
Q ss_pred HHHHHHHHHHHhcCCc--cccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 162 FPFFIHFQKIVLGNPV--AFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 162 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.|.... .+....+. ..+.+.+++.+...+|+.+.++.|+.+|+|+
T Consensus 158 ~G~~a~--~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~ 204 (300)
T PRK13106 158 SGAVAV--LGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEF 204 (300)
T ss_pred HHHHHH--cCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhh
Confidence 554322 11111111 1122323345566788999999999999984
No 14
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=7.8e-29 Score=211.81 Aligned_cols=187 Identities=16% Similarity=0.113 Sum_probs=145.7
Q ss_pred ChhHHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC-
Q 028504 1 MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK- 79 (208)
Q Consensus 1 ~~~~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~- 79 (208)
|+.+.+|+++|+|++||++......+++.|+++|..+.+ ++. ..++..++.+++++++|++|||+|+|+|++|+
T Consensus 1 ~~~~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~--~~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 75 (291)
T PRK12886 1 MMTLLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLP--GAS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPR 75 (291)
T ss_pred CCchHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCC
Confidence 677889999999999999999999988999988854322 221 12345678999999999999999999999986
Q ss_pred -CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhH
Q 028504 80 -PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL 158 (208)
Q Consensus 80 -~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~ 158 (208)
|+||+|+|++|++||..+...+.+.++.+...+|+.+..++.+.. .....|+. .||++.++++..+...+.
T Consensus 76 T~~RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~Y~~-------~Kr~t~~~~~~~g~~~~~ 147 (291)
T PRK12886 76 TAGRAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPAL-FFLLLYSY-------CKRFTALAHVVLGFCLAL 147 (291)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh-------hhccccccHHHHHHHHHH
Confidence 799999999999999998776666666667778988887776655 46788975 899999999998888765
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 159 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.+ ++.+.. ++ +. .+.+.+++...+.+|..+.++.++++|.|+
T Consensus 148 ~~-l~g~~a-~~----g~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~ 189 (291)
T PRK12886 148 AP-LGAWIA-IR----GT--IELPAILLGLAVLFWVAGFDILYALQDLEF 189 (291)
T ss_pred HH-HHHHHH-Hc----CC--CcHHHHHHHHHHHHHHHHHHHHHHhccHHh
Confidence 44 444443 11 22 234445555666788888889999999885
No 15
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.96 E-value=1.1e-28 Score=210.06 Aligned_cols=183 Identities=17% Similarity=0.150 Sum_probs=143.3
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC--CCCCcc
Q 028504 7 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPYLPL 84 (208)
Q Consensus 7 ~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~--~~~RPl 84 (208)
|+|+|+|++||++........+.|.+++..+. .++.. .++.+++++++++++|++|||+|+|+|++| +|+||+
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~--~~~~~---~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGL--PGLKT---LILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence 46899999999999999888888988875432 23322 334568999999999999999999999998 689999
Q ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHH
Q 028504 85 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 164 (208)
Q Consensus 85 ~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~ 164 (208)
|+|++|++||+.++.++.+.++.++..+|+.+..++.... ...+.|+. +||++.++++..+...|..+..|.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~~~~~g~ 147 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVL-LVLIIYPY-------TKRFTFLCHYVLGSTYGLAPLAGW 147 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhh-------HhccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888888888888887776555 46788864 899999999999888876554553
Q ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 165 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
... + +........++......++..+.++.||.+|+|+
T Consensus 148 ~a~--~----g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~ 185 (282)
T TIGR01475 148 VAV--I----GTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEF 185 (282)
T ss_pred HHH--h----CCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 222 1 1222113334456667788889999999999974
No 16
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=2.1e-28 Score=208.13 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=143.0
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC--CCCCcc
Q 028504 7 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPYLPL 84 (208)
Q Consensus 7 ~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~--~~~RPl 84 (208)
|+|+|+|++||++....+..++.|.++|.++. .++.. .++..++++++++++|++||++|+|+||+| +|+||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~--~~~~~---l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHY--IHPIK---ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 47899999999999999999999998885421 22211 223456788999999999999999999998 579999
Q ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHH
Q 028504 85 ACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 164 (208)
Q Consensus 85 ~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~ 164 (208)
|||++|++||+.+..+++++++.+...+|+.+..++.... .....|+ .+||++.++|+.+|...|..+..|
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~-~l~~~yp-------~~KR~t~~~~~~lG~~~g~~~l~g- 147 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVI-FLFIIDP-------FLKRYTAWRHIYMGSIIGLGVLAG- 147 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHH-------HHHhCccccHHHHHHHHHhHHHHH-
Confidence 9999999999999999999999999999999887776543 3444453 599999999999998888544333
Q ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 165 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
+.+ .++..++....+++.....+|+.+.++.++.+|+|+
T Consensus 148 ~~A-----v~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~ 186 (286)
T PRK12895 148 YLA-----VIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEY 186 (286)
T ss_pred HHH-----HcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 322 233333333334556677889999999999999884
No 17
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.96 E-value=3.3e-28 Score=206.91 Aligned_cols=182 Identities=16% Similarity=0.187 Sum_probs=137.7
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CCCcc
Q 028504 7 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLPL 84 (208)
Q Consensus 7 ~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl 84 (208)
|+|+|+|++||++.....++++.|++++.++ ..++.. .++.++++.++++++|++|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 4689999999999999999999999888532 223322 2345678899999999999999999999976 79999
Q ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHH
Q 028504 85 ACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP 163 (208)
Q Consensus 85 ~sG~is~~~a~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g 163 (208)
|+|++|++||..++..+.++++.++.+ +|+.+.....+....+.+.||. ++||++. .|..++...|..+++|
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~------~lKr~~~-~~~~v~~~~g~~~~l~ 148 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI------WLKPRTW-LNIVIGGFAGNAAALA 148 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc------ccccCCh-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999998877 8877654434444457888987 6999987 4777888888787777
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 028504 164 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEI 207 (208)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~ 207 (208)
.+... + | . .+...+++...+.++..+...+++.+|.|
T Consensus 149 g~~a~-~---g-~--~~~~~~ll~~~~~~w~~~~~~~l~~~d~e 185 (279)
T PRK12869 149 GYASG-T---G-S--LDLEAVLLSFLIYLWTPGHIWSLALKYRE 185 (279)
T ss_pred HHHHH-h---C-C--CCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 76552 2 1 2 34444555556666776666554444544
No 18
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.96 E-value=5e-28 Score=206.75 Aligned_cols=185 Identities=19% Similarity=0.238 Sum_probs=143.4
Q ss_pred hhHHHHHHHHHhhhchhhHHHHHHH---HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC
Q 028504 2 QVLNKKCDAFYRLTRPYSCVSIIAA---LLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN 78 (208)
Q Consensus 2 ~~~~~~~~~~l~l~Rp~~~~~~~~~---~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~ 78 (208)
++.+++++.+.+++|++++..+... ...|...+.. +.+. +...++.+++++++++++|++||++|+|+||+|
T Consensus 4 ~~~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~---~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n 78 (289)
T COG0382 4 MSLPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAAS---GLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRIN 78 (289)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc---CCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCC
Confidence 3455666666666666666655544 4445544431 2222 233455678899999999999999999999999
Q ss_pred CC--CCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHH
Q 028504 79 KP--YLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 156 (208)
Q Consensus 79 ~~--~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~ 156 (208)
+| +||+|||++|++||+.+..++.++++.+++.+|++++.+..... ++.+.| | ++||++.++|++++..+
T Consensus 79 ~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~-~l~~~Y----~---~~Kr~~~~~~~~lg~~~ 150 (289)
T COG0382 79 PRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAAL-VLALAY----P---FLKRFTFLPQLVLGLAF 150 (289)
T ss_pred CCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHH----H---HhhcCCchHHHHHHHHH
Confidence 87 99999999999999999999999999999999998877776655 588888 3 79999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 028504 157 GLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEI 207 (208)
Q Consensus 157 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~ 207 (208)
|..+..|.... ++. .+.+.+++..+..+++++.++.||.+|+|
T Consensus 151 ~~~~~~g~~a~------~~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e 193 (289)
T COG0382 151 GLGALAGAAAV------GGS--LPLLAWLLLLAAILWTLGYDIIYAIQDIE 193 (289)
T ss_pred HHHHHHHHHHH------hCc--cchHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 87766665432 211 34555666778889999999999999998
No 19
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.96 E-value=9.5e-28 Score=204.69 Aligned_cols=185 Identities=18% Similarity=0.205 Sum_probs=143.6
Q ss_pred HHHHHHHHHhhhchhhHHH---HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC-
Q 028504 4 LNKKCDAFYRLTRPYSCVS---IIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK- 79 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~---~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~- 79 (208)
.++++++|+|++||+++.. +.++++.|..++..+. ..++. ..++.+++++++++++|++|||+|+|+|++|+
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 78 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR 78 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence 4567999999999998765 5577778888775421 12322 23455678899999999999999999999754
Q ss_pred -CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhH
Q 028504 80 -PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL 158 (208)
Q Consensus 80 -~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~ 158 (208)
|+||+|||++|++||+.++.++.++++.+.+.+|+..+.++.+.. +..+.||. .||++.++++..+..++.
T Consensus 79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~ 150 (285)
T PRK12847 79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAV-ILIVLYPL-------MKRFFYWPQLFLGFTFNM 150 (285)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHhccc-------cccCCcccHHHHHHHHHH
Confidence 699999999999999999999999999988888988888887666 46888875 889999999888877774
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 159 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.+..| +.. .++. .+...+++.+...++..+.+.+|+.+|+|+
T Consensus 151 ~~l~~-~~a-----~~g~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~ 192 (285)
T PRK12847 151 GILMA-FAA-----VQNQ--LDIEAILLYIGCIFWTIGYDTIYAYQDKKD 192 (285)
T ss_pred HHHHH-HHH-----HcCC--CcHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 33333 332 1222 345555666777888999999999999986
No 20
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.96 E-value=5.5e-28 Score=206.56 Aligned_cols=184 Identities=18% Similarity=0.154 Sum_probs=143.4
Q ss_pred HHHHHHHHHhhhchhhHHHHH---HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC-
Q 028504 4 LNKKCDAFYRLTRPYSCVSII---AALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK- 79 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~- 79 (208)
+++++++|+|++||+++.+.. ++++.|..+|.++. .++.. .++..++.+++++++|++|||+|+|+||+|+
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~--~~~~~---~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGL--PPLPL---VGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCC--CCHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 567899999999999977665 57777887775432 23222 2345678899999999999999999998653
Q ss_pred -CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhH
Q 028504 80 -PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL 158 (208)
Q Consensus 80 -~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~ 158 (208)
++||+|||++|++||..++.++.++++.++..+|+.+..++.... .+.+.|+. .||++.++++.++...|.
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~-~~~~~Y~~-------~KR~t~~~~~~lg~~~~~ 151 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAV-PVIFLYPL-------AKRVFPVPQLVLAIAWGF 151 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHhhh-------hhhccccceeeehHHHHh
Confidence 489999999999999999999999999999999998888777655 47788865 899999999988888775
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 159 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.+..| +.. . .+. .+...+++.+...+|..+.++.|+.+|+|+
T Consensus 152 ~~l~g-~~a----~-~g~--~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~ 193 (290)
T PRK12870 152 AVLIS-WSA----V-TGH--LDLGTWLLWAATVFWTLGFDTVYAMSDRED 193 (290)
T ss_pred HHHHH-HHH----H-cCC--CCHHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 43333 332 1 222 234445566677889999999999999985
No 21
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=3.2e-27 Score=202.43 Aligned_cols=188 Identities=14% Similarity=0.158 Sum_probs=147.4
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hccccCC---C
Q 028504 6 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADV--HIDKVNK---P 80 (208)
Q Consensus 6 ~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~--~~D~~~~---~ 80 (208)
+++|.|++.+||++...+..++..|..++.....++++.. .++.+++..++++++|.+|||+|+ |.|+.++ |
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 5678999999999999999999999888864324566433 344568999999999999999995 4555432 7
Q ss_pred CCcccCCccCHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHH
Q 028504 81 YLPLACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMN 156 (208)
Q Consensus 81 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~ 156 (208)
+||+++|++|++|++..+.++..+++.++.. .+.+.+.+++++. ..++.||. | |+++|++ .+|++.++..+
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~-~~~~~Yt~--~-P~~lky~-glGe~~v~~~~ 153 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGV-FLWTCYMG--P-PFFLKYR-WLGEHLVFYAW 153 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHHHHcC--C-CcccCCC-CchHHHHHHHH
Confidence 8999999999999999999988887665433 3555555655544 69999999 6 8888854 68999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 157 GLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 157 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
|+.+.+|.++. +++. ++...+......++...++.++||+||+|+
T Consensus 154 g~~~vlg~~~~-~~~~------~~~~~~~~sl~~~l~~~~il~~n~~~D~e~ 198 (296)
T PRK05951 154 SHMLVMGLIYV-WLGN------LSSPNLLAGVPLGLLMALVLLSNNLRDIED 198 (296)
T ss_pred HHHHHHHHHHH-HhCc------ccHHHHHHHHHHHHHHHHHHHHCCCccchh
Confidence 99988888766 3322 345555667777888888999999999986
No 22
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.96 E-value=2.6e-27 Score=202.99 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=137.3
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CC
Q 028504 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PY 81 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~ 81 (208)
-++++++|+|++||+++....++++.|.+++.+. ..++.. .++.+++++++++++|++|||+|+|+|++|+ |+
T Consensus 6 ~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~~---~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~ 80 (296)
T PRK04375 6 SRATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLLL---LLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKN 80 (296)
T ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCC
Confidence 4578999999999999999999999999988542 233322 2345679999999999999999999999976 79
Q ss_pred CcccCCccCHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHH
Q 028504 82 LPLACGDFSMGEGLAITIASPLMAVAMGIM-LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL 160 (208)
Q Consensus 82 RPl~sG~is~~~a~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~ 160 (208)
||+|||++|++||+.++..+.++++.++.. .|+.+..++.++.+.+.+.||. ++||++ .+|..++...|...
T Consensus 81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~------~lKr~~-~~~~~v~~~~g~~~ 153 (296)
T PRK04375 81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL------WLKRRT-PQNIVIGGAAGAMP 153 (296)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc------chhcCC-ccchHHHHHHHHhH
Confidence 999999999999999999999999988755 5777666665554446778986 699988 57877777777555
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHH---HhhcCCcc
Q 028504 161 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIA---FVKVTNSE 206 (208)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~k~~~D~ 206 (208)
++..++. + .+. ++...+++.+...++..... ..+|.||.
T Consensus 154 ~l~g~~a-~----~g~--~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~ 195 (296)
T PRK04375 154 PLIGWAA-V----TGS--LSWEALILFLIIFLWTPPHFWALAIFRKDDY 195 (296)
T ss_pred HHHHHHH-h----CCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4444443 1 122 34444445556666664444 36777775
No 23
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.95 E-value=4.7e-27 Score=201.96 Aligned_cols=184 Identities=14% Similarity=0.201 Sum_probs=135.1
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CC
Q 028504 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PY 81 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~ 81 (208)
.++++|+|++++||+++..+.+++..|++++..+ +.++.. .+.++++.++.++++|++|||+|+|+||+|+ |+
T Consensus 9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~ 83 (306)
T PRK13362 9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN 83 (306)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence 4567899999999999999999999999888432 233322 2345578899999999999999999999764 69
Q ss_pred CcccCCccCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHH
Q 028504 82 LPLACGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL 160 (208)
Q Consensus 82 RPl~sG~is~~~a~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~ 160 (208)
||+|||++|++||+.++.++..+|+.++ ...|+....++.++.+.+.++||. ++||++.++++..+...+..+
T Consensus 84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~------~lKr~t~~~~~vgg~~ga~p~ 157 (306)
T PRK13362 84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL------YLKRNSVYGTLVGSLSGAMPP 157 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH------HHhccCcHhHHHHHHHHHHHH
Confidence 9999999999999999999999998865 456877766665555457789986 699999999987766655444
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHH---hhcCCcc
Q 028504 161 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAF---VKVTNSE 206 (208)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~D~ 206 (208)
..| +.. .++. .+...+++...+.+|...-.. .+|.+|.
T Consensus 158 l~G-~~a-----~~g~--~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy 198 (306)
T PRK13362 158 VVG-YCA-----VTGQ--FDAGALILLLMFSLWQMPHSYAIAIFRFNDY 198 (306)
T ss_pred HHH-HHH-----HcCC--CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 344 333 1222 234445556666677655442 3444554
No 24
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=3.5e-27 Score=200.99 Aligned_cols=183 Identities=14% Similarity=0.111 Sum_probs=141.4
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHhcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CCCc
Q 028504 7 KCDAFYRLTRPYSCVSIIAALLSVSLLPLQ-SPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLP 83 (208)
Q Consensus 7 ~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~RP 83 (208)
|+++|+|++||+|.+.....++.+.+.+.. ..+..++.. .++..++++++++++|++|||+|+|+|++|+ |+||
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP 77 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWAD---LLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE 77 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence 468999999999999987777777666531 012233322 2345679999999999999999999999986 7999
Q ss_pred ccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHH
Q 028504 84 LACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP 163 (208)
Q Consensus 84 l~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g 163 (208)
+|+|++|++||+.++..+.+.++.++..+|+.+..++.+.. .....|+. .||++.++++..+...+..+..|
T Consensus 78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~-~~~~~Y~~-------~Kr~t~~~~~~lg~~~~~~~l~g 149 (284)
T PRK12888 78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAV-APLVVYPY-------AKRFTNFPHAILGLAQAVGPVGA 149 (284)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH-------hhcccchhhHHHHHHHHHHHHHH
Confidence 99999999999999999888888888888988887776655 35678864 89999999999888877544433
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 164 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
++. ++ | . ++...+++.+...+|..+.++.|+.+|.|+
T Consensus 150 -~~a-~~---g-~--~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~ 186 (284)
T PRK12888 150 -WIA-VT---G-T--WSWPAVLLGLAVGLWIGGFDLIYACQDAEV 186 (284)
T ss_pred -HHH-Hc---C-C--CCHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 433 11 2 2 344555666778889999999999999984
No 25
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.95 E-value=6.5e-27 Score=199.27 Aligned_cols=183 Identities=17% Similarity=0.149 Sum_probs=139.8
Q ss_pred HHHHHHHHhhhchhhHHHHH---HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--
Q 028504 5 NKKCDAFYRLTRPYSCVSII---AALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-- 79 (208)
Q Consensus 5 ~~~~~~~l~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~-- 79 (208)
++++++|+|++|++++.... ++++.|..++.++.+ +... .++..++.+++++++|++|||+|+|+||+|+
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~--~~~~---~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt 76 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIP--DLWV---LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT 76 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCC--CHHH---HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence 56899999999977665444 556678877754322 2221 2344578889999999999999999999754
Q ss_pred CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHH
Q 028504 80 PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 159 (208)
Q Consensus 80 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~ 159 (208)
|+||+|||++|++||..++..+..+++.+++.+|+....++.+.. +..+.|+. .||++.++++.++...|..
T Consensus 77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~-~~~~~Y~~-------~Kr~~~~~~~~~g~~~g~~ 148 (282)
T PRK12848 77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAAL-ALAWIYPF-------MKRYTHLPQVVLGAAFGWG 148 (282)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHh-------HHhcCcccHHHHHHHHHHH
Confidence 689999999999999999999999999988889988888776655 46788854 7999999999888888865
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 160 LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
+..|.... ++. .+...+++.+...++..+....++.+|.|+
T Consensus 149 ~~~g~~a~------~~~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~ 189 (282)
T PRK12848 149 IPMAFAAV------QGS--VPLEAWLLFLANILWTVAYDTQYAMVDRDD 189 (282)
T ss_pred HHHHHHHH------hCC--CcHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 54443221 222 334445556677888888999999999985
No 26
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.95 E-value=8.5e-27 Score=199.42 Aligned_cols=185 Identities=18% Similarity=0.178 Sum_probs=146.3
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hcccc--CCCCCc
Q 028504 8 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADV--HIDKV--NKPYLP 83 (208)
Q Consensus 8 ~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~--~~D~~--~~~~RP 83 (208)
+|+|++++||+++..+.++++.|..++... ..+++.. .++.+++.++.++++|.+|||+|+ |+|+. ++|+||
T Consensus 3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~ 78 (293)
T PRK06080 3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA 78 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence 688999999999999999999998887432 2344322 345567899999999999999999 57854 568999
Q ss_pred ccCCccCHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHH
Q 028504 84 LACGDFSMGEGLAITIASPLMAVAMGIML----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 159 (208)
Q Consensus 84 l~sG~is~~~a~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~ 159 (208)
+++|++|++|++.++..+.++++.++..+ +++...+++++. ..++.||. | |+++|++ .+||+.++..+|..
T Consensus 79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~-~~~~~Ys~--~-p~~~~~~-glge~~~~~~~G~~ 153 (293)
T PRK06080 79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCI-AAAILYTG--G-PKPYGYT-GLGELFVGVFFGLV 153 (293)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhhhhcC--C-CCccCCC-CcHHHHHHHHHHHH
Confidence 99999999999999999998887766543 555555555444 58899999 5 7777765 57999999999988
Q ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 160 LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
+..+.++. +++ ..+.+.++...+.+++..++.++||++|+|+
T Consensus 154 ~~~~~~~~-~~~------~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~ 195 (293)
T PRK06080 154 IVLGTYYL-QAG------TVDSAVFLPALPCGLLIGAVLLANNIRDIET 195 (293)
T ss_pred HHHHHHHH-hcC------CCCHHHHHHHHHHHHHHHHHHHhcCCCcchh
Confidence 77776554 321 1456677778888999999999999999986
No 27
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.95 E-value=6.3e-27 Score=199.85 Aligned_cols=178 Identities=17% Similarity=0.266 Sum_probs=131.4
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC--CCC
Q 028504 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPY 81 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~--~~~ 81 (208)
.++++++|+|++||++|.++.+....+ +++... .+ +..+...++++++.+++++++|++||++|+|+||+| ||+
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~~~-~~a~~~-~~--~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~ 82 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFAAP-IFAGNL-LN--PGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN 82 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHHHH-HHHHhh-cc--cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence 456899999999999999998865544 444321 11 111223345667778899999999999999999996 789
Q ss_pred CcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHH
Q 028504 82 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 161 (208)
Q Consensus 82 RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~ 161 (208)
||+|||++|+++|+.++.++..+|+.+++.+|+....+.... +++.++||. ++||++.+++++++..++..+.
T Consensus 83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~~~~-~~~~~~Ys~------~lK~~~~~d~l~va~~~~lr~~ 155 (295)
T PRK12324 83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLLVY-LVLNLAYSF------KLKHQPVLDVFCIASGFVLRAI 155 (295)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhH------HhcCCchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888777665444 468899998 7999999999999888775554
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcC
Q 028504 162 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVT 203 (208)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 203 (208)
.|.. ..+ ...|.++..++.+.++| ....|..
T Consensus 156 ~G~~------a~~--~~~s~wll~~~~~~~lf---la~~kR~ 186 (295)
T PRK12324 156 AGGV------AIG--VPLSPWLLLCTALLSLF---LAAGKRK 186 (295)
T ss_pred HHHH------HhC--CCccHHHHHHHHHHHHH---HHHHHHH
Confidence 4432 222 34666665544444433 3444443
No 28
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.95 E-value=1.6e-26 Score=199.64 Aligned_cols=192 Identities=15% Similarity=0.090 Sum_probs=146.1
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC----CCCCc
Q 028504 8 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN----KPYLP 83 (208)
Q Consensus 8 ~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~----~~~RP 83 (208)
+|.|++++||++...++.+++.|..++....+++++.. .++.+++.++.|+++|.+|||+|.+.|+-+ +++|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 57899999999999999999999988753323455432 234567888999999999999998754433 37899
Q ss_pred ccCCccCHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHH
Q 028504 84 LACGDFSMGEGLAITIASPLMAVAMG----IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 159 (208)
Q Consensus 84 l~sG~is~~~a~~~~~~l~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~ 159 (208)
+++|.+|+|+++..+..+..++.+++ +..++..+.+++++. ..++.||. | |+++|+++ +||+.++..+|+.
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~-~~~~~Yt~--g-P~~l~y~g-LGe~~v~i~~G~~ 154 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICF-AIGILYTG--G-PLPLSRMP-LGEIFSGLTMGFG 154 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH-HHhhhhcC--C-CcccccCc-cHHHHHHHHHHHH
Confidence 99999999999999999999988754 445655666665554 68999999 6 99999887 8999999999998
Q ss_pred HHHHHHHHHHHHHhcCC-c---------cccH----HHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 160 LLFPFFIHFQKIVLGNP-V---------AFTK----PVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 160 ~~~g~~~~~~~~~~~~~-~---------~~~~----~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
+..|.++. |++..... + .++. ..++.+...++...+++++||+||+||
T Consensus 155 ~v~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~ 216 (317)
T PRK13387 155 IFLLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDE 216 (317)
T ss_pred HHHHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 88887665 43221100 0 0000 112367778888889999999999996
No 29
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.95 E-value=3.3e-26 Score=194.72 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=118.3
Q ss_pred HHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CCCcccC
Q 028504 9 DAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLPLAC 86 (208)
Q Consensus 9 ~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl~s 86 (208)
|+|+|++||+++..+..+++.|.+++.+.. +.++.. .++..++++++++++|++|||+|+|+|++|+ |+||+||
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPL---LLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHH---HHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 469999999999999999999999885431 133322 2345678999999999999999999999865 7999999
Q ss_pred CccCHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHH
Q 028504 87 GDFSMGEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFF 165 (208)
Q Consensus 87 G~is~~~a~~~~~~l~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~ 165 (208)
|++|++||..++..+.++|+.+ ...+|+....++.++.+.+.++||. .+||++.+ +..++...|...+++.|
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~------~lKr~~~~-~~~v~~~~g~~~~l~g~ 149 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI------WLKRRTPQ-NTVIGGFAGAVPPLIGW 149 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh------hhccCCch-hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999884 5558888777776655445889997 48998876 55566677777767766
Q ss_pred HH
Q 028504 166 IH 167 (208)
Q Consensus 166 ~~ 167 (208)
+.
T Consensus 150 ~a 151 (280)
T TIGR01473 150 AA 151 (280)
T ss_pred HH
Confidence 54
No 30
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.94 E-value=5.5e-26 Score=196.09 Aligned_cols=186 Identities=15% Similarity=0.143 Sum_probs=143.4
Q ss_pred HHHHHHHHHhhh---chhhHHHHHHHHHHHHHhcCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 028504 4 LNKKCDAFYRLT---RPYSCVSIIAALLSVSLLPLQSPA---DFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV 77 (208)
Q Consensus 4 ~~~~~~~~l~l~---Rp~~~~~~~~~~~~g~~la~~~~~---~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~ 77 (208)
+++++++|+|++ ||+......++++.|..+|..... ..++. ..++..++++++++++|++|||+|+|+|++
T Consensus 26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~ 102 (314)
T PRK12878 26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDIDAK 102 (314)
T ss_pred cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 457889999999 999999999999999998854211 22322 234566899999999999999999999987
Q ss_pred CC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504 78 NK--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 155 (208)
Q Consensus 78 ~~--~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~ 155 (208)
|+ |+||+|+|++|++|++.++.++.++|+.+.+..|++...++++.. +..+.|+. .||++.+++...+..
T Consensus 103 ~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~-~~~~~Y~~-------~KR~t~~~~~~~Gl~ 174 (314)
T PRK12878 103 VARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASL-AIVAAYPF-------MKRITWWPQFFLGLA 174 (314)
T ss_pred CCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHH-------HHhcCCcchHHHHHH
Confidence 64 699999999999999999999999999988888888888887666 46888965 899888888877766
Q ss_pred HhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 156 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 156 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.+.....| |+. ++ +. ++...+++.....++....+.+++.+|.|+
T Consensus 175 ~~~~~l~g-~~a-~~----g~--~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~ 219 (314)
T PRK12878 175 FSWGALMG-WAA-HF----GS--LSLAAVLLYAGSIAWTIGYDTIYAHQDKED 219 (314)
T ss_pred HHHHHHHH-HHH-Hh----CC--CchHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 55444444 332 22 22 333334445566778888889999999885
No 31
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=1.9e-25 Score=189.43 Aligned_cols=184 Identities=16% Similarity=0.195 Sum_probs=135.5
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcc
Q 028504 5 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPL 84 (208)
Q Consensus 5 ~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl 84 (208)
.+.++.+++++||..|+.+..+..+|...++.. .++.+.. +.+++......+...|.+|||+|+|+|++|+|+||+
T Consensus 9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i 84 (292)
T PRK13595 9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGW 84 (292)
T ss_pred hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCC
Confidence 456788999999999999999999999776431 2221122 223456677888999999999999999999999999
Q ss_pred cCCccCHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHH
Q 028504 85 ACGDFSMGEGLAITIASPLMA----VAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL 160 (208)
Q Consensus 85 ~sG~is~~~a~~~~~~l~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~ 160 (208)
++|++|++|++.+..++...+ +.+++..|+....+..... +..++||. | |+|+|++|++|+++.. .+|..
T Consensus 85 ~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~-~l~~~YS~--p-PlRlK~rp~l~~l~~~-~~g~p- 158 (292)
T PRK13595 85 QGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYA-ALFVGYSL--P-PLRFKARPFLDGLSNA-AYALP- 158 (292)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHcc--C-ccchhcCcchhHHHHH-HHHHH-
Confidence 999999999998766665553 4556677877777666555 69999999 8 9999999999998863 44432
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 161 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
++.. ....|.+ ..+..+ ....+|..+.++.||++|+|.
T Consensus 159 -~~~~----~~~~g~~---~~~~~l--~a~~~w~~g~dii~ai~Dieg 196 (292)
T PRK13595 159 -LALP----ALALGAP---VPWPPL--LALMAWSVGKHAFDAAQDIPA 196 (292)
T ss_pred -HHHH----HHHcCCc---chHHHH--HHHHHHHHHHHHHHhccChHh
Confidence 2221 2223322 122222 344577799999999999873
No 32
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.94 E-value=1.4e-25 Score=190.92 Aligned_cols=180 Identities=18% Similarity=0.218 Sum_probs=135.4
Q ss_pred HHHHhhhc---hhhHHHHHHHHHHHHHhcCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CCC
Q 028504 9 DAFYRLTR---PYSCVSIIAALLSVSLLPLQSPADF-TPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYL 82 (208)
Q Consensus 9 ~~~l~l~R---p~~~~~~~~~~~~g~~la~~~~~~~-~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~R 82 (208)
++|.|++| |+......++...|..++... ++. ++.. .++..++..++++++|++|||+|+|+|++|+ |+|
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~~~---~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R 77 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPLYL---LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSR 77 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcHHH---HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCC
Confidence 45665555 555556667777788887531 122 2221 2345578899999999999999999999764 699
Q ss_pred cccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHH
Q 028504 83 PLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF 162 (208)
Q Consensus 83 Pl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~ 162 (208)
|+|||++|++||+.++.++.++++.+++.+|+.+..++.+.. +..+.||. .||++.++++..+...+.....
T Consensus 78 Pl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~-~~~~~Y~~-------~Kr~~~~~~~~~g~~~~~~~~~ 149 (281)
T TIGR01474 78 PLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASL-ALVATYPF-------MKRITYWPQLVLGLAFGWGALM 149 (281)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHhch-------hcccccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999998889998888887666 46889975 8999999999888777765555
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 163 PFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
|. .. ..| . .+...+++.+...++..+.+.+|+.+|+|+
T Consensus 150 g~-~a----~~g-~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~ 187 (281)
T TIGR01474 150 GW-AA----VTG-D--LSTAAWVLYLANILWTLGYDTIYAMQDKED 187 (281)
T ss_pred HH-HH----HcC-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 53 22 112 2 344444455667788889999999999985
No 33
>PRK08238 hypothetical protein; Validated
Probab=99.94 E-value=7e-26 Score=204.95 Aligned_cols=182 Identities=19% Similarity=0.225 Sum_probs=138.7
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC--CCC
Q 028504 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN--KPY 81 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~--~~~ 81 (208)
.+.++++|++++||++|.++++..+ +.+.+.. .. ++..+...++++++.+++++++|++||++|+|+||+| ||+
T Consensus 187 ~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~--~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~ 262 (479)
T PRK08238 187 RPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FG--DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRR 262 (479)
T ss_pred CchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cC--ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Confidence 3457899999999999999998754 6666532 11 2222333456677889999999999999999999998 689
Q ss_pred CcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHH
Q 028504 82 LPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 161 (208)
Q Consensus 82 RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~ 161 (208)
||+|||++|+++|+.++.+++++|+.+++.+|+........ .+++..+||. ++||++.+++++++..++..+.
T Consensus 263 RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~~~-~~~~~~~Ys~------~lKr~~~~~~~~la~~~~lr~~ 335 (479)
T PRK08238 263 RPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLA-YLALTLAYSL------RLKRKVLVDVLTLAALYTLRII 335 (479)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhhH------HhcCCccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999888865554444 4468899987 7999999999999888776555
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 028504 162 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEI 207 (208)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~ 207 (208)
.|.. +.+ +..|.++..++ .+++..++++|+..|++
T Consensus 336 ~G~~------a~~--~~~s~wll~~~---~~~~l~la~~KR~~El~ 370 (479)
T PRK08238 336 AGAA------AIG--VALSFWLLAFS---MFFFLSLALVKRYTELR 370 (479)
T ss_pred HHHH------Hhc--cCHHHHHHHHH---HHHHHHHHHHHhHHHHH
Confidence 5532 222 33444444322 24456789999988764
No 34
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=4.2e-25 Score=188.43 Aligned_cols=190 Identities=13% Similarity=0.054 Sum_probs=140.3
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHhcCC---CCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--
Q 028504 6 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQ---SPAD-FTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK-- 79 (208)
Q Consensus 6 ~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~---~~~~-~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~-- 79 (208)
+|+|.|.|++|.+|.+..+.-.+.|+++|.. ...+ ++...+..+++..++++.+++++|++||++|+|+|++|+
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT 81 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRT 81 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCC
Confidence 4689999999999988888778889988852 0011 001112223455679999999999999999999999987
Q ss_pred CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHH
Q 028504 80 PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 159 (208)
Q Consensus 80 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~ 159 (208)
|+||+|+|++|++||+.++..+.+.++.++..+|+.+..++.+..+ ..++||. +||++.++++..|...+..
T Consensus 82 ~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~-~~~iY~~-------~KR~t~~~~~vLGl~~~~~ 153 (300)
T PRK12876 82 SSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTL-LMIIYPY-------TKRVTFLCHWILGLVYYLA 153 (300)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHh-------HhcCCchhHHHHHHHHHHH
Confidence 6999999999999999999888888888888899999888877664 5678865 9999999999888777753
Q ss_pred HHHHHHHHHHHHHhcCCccccH--HHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 160 LLFPFFIHFQKIVLGNPVAFTK--PVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
+ ++.+.+ ..+++..+.. ..++......++..+.++.++.+|+|.
T Consensus 154 ~-l~~~~A----v~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~ 199 (300)
T PRK12876 154 I-LMNFFA----IIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEF 199 (300)
T ss_pred H-HHHHHH----HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhh
Confidence 3 333333 2233222111 122334455666778899999999874
No 35
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.94 E-value=6.2e-25 Score=187.50 Aligned_cols=187 Identities=17% Similarity=0.127 Sum_probs=133.0
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHH---HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC-
Q 028504 4 LNKKCDAFYRLTRPYSCVSIIAAL---LSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK- 79 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~~~~---~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~- 79 (208)
+++++++|+|++|.+++.+..+.. ..+..++.......++.. .++..++++++++++|++||++|||+||+|+
T Consensus 2 ~~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~---l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~R 78 (289)
T PLN02809 2 LPPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKM---LALFGCGALLLRGAGCTINDLLDRDIDKKVER 78 (289)
T ss_pred CchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhHHhccccCCCC
Confidence 357899999999998877665544 334444431111112221 2345678899999999999999999999864
Q ss_pred -CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhH
Q 028504 80 -PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGL 158 (208)
Q Consensus 80 -~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~ 158 (208)
|+||+|||++|++||+.+..++.++++.+.+.+|+.+..++.+.. +..+.|+. .||++.++++..+...+.
T Consensus 79 T~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~Y~~-------~KR~t~~~~~~lg~~~~~ 150 (289)
T PLN02809 79 TKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSL-LLVFTYPL-------MKRFTFWPQAFLGLTFNW 150 (289)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhH-------HHhcCcchHHHHHHHHHH
Confidence 699999999999999999999999999998888988888777665 46788865 999999999987777664
Q ss_pred HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 159 LLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.+..|. .. ..| ..... +...+.+...+|..+-+.....+|+|+
T Consensus 151 ~~l~g~-~a----v~g-~~~~~-~~~~l~~~~~~W~~~~d~~ya~~D~e~ 193 (289)
T PLN02809 151 GALLGW-AA----VKG-SLDPA-VVLPLYASGVCWTLVYDTIYAHQDKED 193 (289)
T ss_pred HHHHHH-HH----HhC-CCChH-HHHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 444443 22 222 22111 222244455667777777777777763
No 36
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-25 Score=188.88 Aligned_cols=184 Identities=16% Similarity=0.232 Sum_probs=146.5
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CC
Q 028504 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PY 81 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~ 81 (208)
.++++|+|++++||+.....+++...|+++|.. ...++.. .+++.+++.+..+++|++|+++|||+|++|+ ++
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 457899999999999999999999999999974 2234432 3456789999999999999999999999985 69
Q ss_pred CcccCCccCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHH
Q 028504 82 LPLACGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLL 160 (208)
Q Consensus 82 RPl~sG~is~~~a~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~ 160 (208)
||+|+|+++|+|++.++.++.++|+.+. +..|+.+..+++.+.+++..+||. .+||++.. |..+|..-|..+
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~------~lKR~T~~-NiviGg~aGa~P 161 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL------WLKRRTPQ-NIVIGGFAGAMP 161 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hccCCccc-ceeeeecccccc
Confidence 9999999999999999999999999876 788999998998888899999999 69998865 778888888887
Q ss_pred HHHHHHHHHHHHhcCCccccHHHHHHHHHH----HHHHHHHHHhhcCC
Q 028504 161 LFPFFIHFQKIVLGNPVAFTKPVLFTAAYM----VIWNAAIAFVKVTN 204 (208)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~k~~~ 204 (208)
++..|.+ ..+.+....+..++++|+ =+|..++--.+|++
T Consensus 162 pliGwaA-----vtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~ 204 (304)
T COG0109 162 PLIGWAA-----VTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYK 204 (304)
T ss_pred ccceeee-----eeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 7776644 223344455554444443 24555555555553
No 37
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.93 E-value=4.5e-24 Score=183.18 Aligned_cols=188 Identities=14% Similarity=0.090 Sum_probs=148.4
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--ccccCCCC
Q 028504 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPY 81 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~--~D~~~~~~ 81 (208)
-+++++.|++.+||+++..++.+++.|..++.....++++.. .++.+++..+.|+++|.+|||+|++ .|+. +++
T Consensus 8 ~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~ 83 (304)
T PRK07419 8 SPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH 83 (304)
T ss_pred CccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc
Confidence 356789999999999999999999999988854323566533 3456689999999999999999997 7874 222
Q ss_pred CcccCCccCHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHh
Q 028504 82 LPLACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNG 157 (208)
Q Consensus 82 RPl~sG~is~~~a~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g 157 (208)
..+++..++|+....+..+..+++.++.+ .+++.+.+++++ ++.++.||. | |+++|+++ +|++.++..+|
T Consensus 84 -~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g-~~~~~~YT~--g-P~~l~y~g-LGE~~v~l~~G 157 (304)
T PRK07419 84 -SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLC-CFLGYLYQG--P-PFRLGYQG-LGEPLCFLAFG 157 (304)
T ss_pred -CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH-HHHhheccC--C-CcccCCCC-chHHHHHHHHH
Confidence 34456668999999999998888766544 345455555554 469999999 6 99999876 69999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 158 LLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
+++..|.++. |++ .++...+..+...++.+.++.++||+||+||
T Consensus 158 ~l~v~g~~yv-~t~------~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~ 201 (304)
T PRK07419 158 PLAVAAALYS-QTP------SWSLIPLAASIILGLATSLILFCSHFHQVED 201 (304)
T ss_pred HHHHHHHHHH-hcC------CCCHHHHHHHHHHHHHHHHHHHHcCCcchhh
Confidence 9998888776 442 2566667778888899999999999999997
No 38
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.93 E-value=5.3e-24 Score=181.37 Aligned_cols=177 Identities=15% Similarity=0.118 Sum_probs=139.2
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--ccccC--CCCCcccCCccCH
Q 028504 16 RPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVN--KPYLPLACGDFSM 91 (208)
Q Consensus 16 Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~--~D~~~--~~~RPl~sG~is~ 91 (208)
||++...++.+++.|..++.+. ..+++.. .++.+++++++|+++|.+|||+|++ .|+.+ +|+|++++|.+|+
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~-~~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWL-HAFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 8999999999999999888543 2566532 3455688899999999999999995 46543 4799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----hH------HHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHH
Q 028504 92 GEGLAITIASPLMAVAMGIML----RS------PPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 161 (208)
Q Consensus 92 ~~a~~~~~~l~~~~~~l~~~~----~~------~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~ 161 (208)
|+++..+..++.+++.++.++ ++ +...++++ +++.++.||. | |+++|+++ +|++.++..+|+++.
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~-~~~~~~~Yt~--g-P~~l~y~g-LGE~~v~i~~G~l~v 151 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGAL-CIAAAITYTV--G-SKPYGYAG-LGDISVLVFFGPLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHH-HHHHhHhhcC--C-CCccccCc-hHHHHHHHHHHHHHH
Confidence 999999999988887665543 32 22344444 4468999999 6 89999755 799999999999988
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 162 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.|.++. |++ .++...++.....++.+.+++++||+||+||
T Consensus 152 ~g~~yv-q~~------~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~ 191 (284)
T TIGR00751 152 LGTQYL-QAH------RVDWVGILPAVATGLLACAVLNINNLRDIPT 191 (284)
T ss_pred HHHHHH-hcC------CCCHHHHHHHHHHHHHHHHHHHHcCcccchh
Confidence 888765 442 2455555667778888899999999999996
No 39
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=4.8e-24 Score=181.84 Aligned_cols=186 Identities=17% Similarity=0.149 Sum_probs=136.6
Q ss_pred HHHHHHHHHhhhchhhHHHHH---HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC-
Q 028504 4 LNKKCDAFYRLTRPYSCVSII---AALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK- 79 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~---~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~- 79 (208)
-.+++++|+|++||+++.++. ++...|.+++.... .+.. ..++.+++++++++++|++||+.|+|+||+|+
T Consensus 3 ~~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~--~~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R 77 (294)
T PRK12873 3 RSIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAP--PSLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVER 77 (294)
T ss_pred chHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCC--CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 357899999998877766554 44555666654321 1221 23456689999999999999999999999874
Q ss_pred -CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHH
Q 028504 80 -PYLPLACGDFSMGEGLAITIASPLMAVAMGIML----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIIS 154 (208)
Q Consensus 80 -~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~ 154 (208)
++||+|||++|++||+.++.++.++++.+.+.+ |+.+..++.+..+ +...||. .||++.+.++..+.
T Consensus 78 T~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~-~~~~Y~~-------~KR~t~~~~~vlg~ 149 (294)
T PRK12873 78 TKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALP-PILIYPS-------AKRWFAYPQAILAL 149 (294)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHHHHHH-------HHhccccchHHHHH
Confidence 699999999999999999999999998887654 6677777766664 7788975 99999999988887
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 155 MNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 155 ~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
..+.-+..|+ .+ ..+.+....+.+++...+.+|..+-++.....|.|+
T Consensus 150 ~~a~~~l~gw-~A-----v~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~ed 197 (294)
T PRK12873 150 CWGFAVLIPW-AA-----AEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRD 197 (294)
T ss_pred HHHhHHHHHH-HH-----HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 7664444443 22 223333333444445677788888888888888774
No 40
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=2.6e-24 Score=182.05 Aligned_cols=146 Identities=10% Similarity=0.079 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 028504 49 AFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVG 128 (208)
Q Consensus 49 ~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 128 (208)
.+++++..++..+++|++|||+|+|+||+|+|+||+|||++|+++|+.++..+.++++.++... ....... +..
T Consensus 48 ~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i~~~-~i~ 121 (299)
T PRK13592 48 EFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNVGWF-LFL 121 (299)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHH
Confidence 3455667788899999999999999999999999999999999999999999977777766554 1111112 234
Q ss_pred Hhc-----cCCCCCccccccCchhHHHHHHHHHhHHHHHH--HHHH-HHHHHhcCCccccHHHHHHHHHHHHHHHHHHHh
Q 028504 129 GAY-----SIDLPPLLRWKGNPLMAAVTIISMNGLLLLFP--FFIH-FQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFV 200 (208)
Q Consensus 129 ~~Y-----s~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (208)
+.| +. ++||.++.||+.++...|..+..| ++.. ++....|.+. .....+++.....+.+++.|++
T Consensus 122 ~lY~~lm~a~------~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~ 194 (299)
T PRK13592 122 YIYGTLMSFW------FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVC 194 (299)
T ss_pred HHHHHHHHHH------HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHH
Confidence 445 76 799999999999999999776444 2211 1222333332 1221123344556668899999
Q ss_pred hcCCccc
Q 028504 201 KVTNSEI 207 (208)
Q Consensus 201 k~~~D~~ 207 (208)
||+||++
T Consensus 195 KdieD~g 201 (299)
T PRK13592 195 RKIRAPK 201 (299)
T ss_pred HhhcCCc
Confidence 9999943
No 41
>PLN02922 prenyltransferase
Probab=99.92 E-value=4.5e-23 Score=177.88 Aligned_cols=191 Identities=15% Similarity=0.117 Sum_probs=144.0
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--ccccCCC--
Q 028504 5 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKP-- 80 (208)
Q Consensus 5 ~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~--~D~~~~~-- 80 (208)
+++++.|++.+||++...++.+++.|..+|.....++++.. .++.+++.++.|++.|.+|||+|.+ .|+.++.
T Consensus 12 ~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~ 88 (315)
T PLN02922 12 LSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESV 88 (315)
T ss_pred ccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCC
Confidence 45789999999999999999999999888864323566543 3456789999999999999999986 6875432
Q ss_pred CCcccCCccCHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504 81 YLPLACGDFSMGEGLAITIASPLMAVAMGIML-----RSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 155 (208)
Q Consensus 81 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~ 155 (208)
.|+ .| |+++.+..+..+.++++...+.+ +++.+.++++ ++..++.||. | |+++|+++ +|++.++..
T Consensus 89 ~~~--~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~-g~~~~~~Yt~--g-P~pl~y~g-LGE~~v~i~ 159 (315)
T PLN02922 89 VNL--VG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAA-AILCGYVYQC--P-PFRLSYKG-LGEPLCFAA 159 (315)
T ss_pred CCc--cc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHH-HHHHHHHHhc--C-CcccccCc-chHHHHHHH
Confidence 344 33 99999999888888877433222 3444555554 4479999999 6 89999765 799999999
Q ss_pred HhHHHHHHHHHHHHHHHhcC-C---ccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 156 NGLLLLFPFFIHFQKIVLGN-P---VAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 156 ~g~~~~~g~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
+|+++..|.|+. |++..+. . ..++...++.+...++.+.++.++||+||+||
T Consensus 160 fG~l~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~ 215 (315)
T PLN02922 160 FGPLATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDG 215 (315)
T ss_pred HHHHHHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhh
Confidence 999888777665 4432211 1 12455667788899999999999999999997
No 42
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.91 E-value=3.9e-23 Score=177.05 Aligned_cols=180 Identities=17% Similarity=0.181 Sum_probs=118.9
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccC------
Q 028504 5 NKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVN------ 78 (208)
Q Consensus 5 ~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~------ 78 (208)
++++++|++++||++......++..|.++|.......++... ++.++++.++.+++|++|||+|+|+|+.|
T Consensus 2 ~~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~---~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~ 78 (297)
T PRK12871 2 KETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELT---IKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLT 78 (297)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHH---HHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhh
Confidence 357899999999998888877777787776311122343221 22234555556778999999999999864
Q ss_pred ---C--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHhHhccCCCCCcccccc---Cc-
Q 028504 79 ---K--PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSP----PLVIGFIIWCIVGGAYSIDLPPLLRWKG---NP- 145 (208)
Q Consensus 79 ---~--~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~Ys~~~P~p~~lK~---~~- 145 (208)
| ++||+++|++|++|++.+++++.++|+.++..++.. .+.++ +.....++.|+. .|| .|
T Consensus 79 r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~-------~kr~~~~p~ 150 (297)
T PRK12871 79 RYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV-------KKRNQKYPV 150 (297)
T ss_pred ccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-------ccccccccH
Confidence 2 589999999999999999999999998887765442 22222 222245566654 233 24
Q ss_pred --hhHHHHHHHHHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 146 --LMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 146 --~~~~~~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
..|++. .+. +++..+.. .| . .+...+....+..+++.+.+.+||.+|.|+
T Consensus 151 ~~l~G~~~----~~~-~~~~g~~~-----~g-~--~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~ 202 (297)
T PRK12871 151 AQLLGRTD----FTL-FPAAGYLC-----YG-Q--PDMTALLYMVFFYPWTMAHLGLNDFIDLEN 202 (297)
T ss_pred HHHHHHHH----HHH-HHHHHHHH-----hC-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 233332 222 22333221 12 2 344455566778889999999999999985
No 43
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.91 E-value=6.2e-23 Score=173.62 Aligned_cols=193 Identities=16% Similarity=0.138 Sum_probs=150.4
Q ss_pred ChhHHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--ccc--
Q 028504 1 MQVLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDK-- 76 (208)
Q Consensus 1 ~~~~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~--~D~-- 76 (208)
|+..+++.+.|++++||+++..++.++++|..+|.+....+++ +..++.++++.+++.+.|..|||.|.+ .|.
T Consensus 1 ~~~~~~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~---~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g 77 (303)
T COG1575 1 MSQKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL---LVALLALIAAILLQILVNLANDYFDYKKGTDTHG 77 (303)
T ss_pred CCcccHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH---HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCC
Confidence 3445677899999999999999999999999988754334443 234556789999999999999999986 574
Q ss_pred --cCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHH
Q 028504 77 --VNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAV 150 (208)
Q Consensus 77 --~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~ 150 (208)
..+.++-+.+.+++++.++.+...+...+..++.. .+++.+.++++ +++.++.||+| |+++++. .+|++
T Consensus 78 ~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l-~~~~g~~YTgG---p~PlgY~-gLGEi 152 (303)
T COG1575 78 PDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLL-CIAAGILYTGG---PFPLGYM-GLGEI 152 (303)
T ss_pred CccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHheeeeccC---CcCcccC-CHHHH
Confidence 34567888889999999998888888877766543 34443455544 44799999996 6666654 48999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 151 TIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 151 ~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.++.++|++...|.++. |+.. +++...+.+...++-+.++..+||+||+||
T Consensus 153 ~~~vffG~l~v~g~~yi-qt~~------~~~~~ll~slp~gil~~~Il~aNNirDie~ 203 (303)
T COG1575 153 FVGVFFGPLIVLGAYYI-QTGR------LSWAILLPSLPVGILIANILLANNLRDIEE 203 (303)
T ss_pred HHHHHHHHHHHHHHHHH-hccc------chHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 99999999888887765 4422 556677788888899999999999999997
No 44
>PLN02776 prenyltransferase
Probab=99.91 E-value=1.7e-22 Score=174.98 Aligned_cols=162 Identities=15% Similarity=0.077 Sum_probs=124.7
Q ss_pred hhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CCCcccCCccCH
Q 028504 14 LTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLPLACGDFSM 91 (208)
Q Consensus 14 l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~RPl~sG~is~ 91 (208)
++||+....++++...|+++|.++.. ++. .+++..+++.++++++|++||++|+|+|++|+ ++||+|+|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 57999999999999999999854322 322 12345679999999999999999999999875 699999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHHHHHH
Q 028504 92 GEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQK 170 (208)
Q Consensus 92 ~~a~~~~~~l~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~~~~~ 170 (208)
++|+.+++++.++|+.+ ++.+|+.+..++.+..+.+...||. +||++.+ |..+|...|...+++.|.+.
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~-------lKR~t~~-~~~lG~~~Ga~ppL~Gw~Av-- 145 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP-------LKQIHPA-NTWVGAVVGAIPPLMGWAAA-- 145 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-------HccCCch-hHHHHHHHHHHHHHHHHHHH--
Confidence 99999999999999854 5678988888877766556778975 9999977 57889898977777776552
Q ss_pred HHhcCCccccHHHHHHHHHHHHHHH
Q 028504 171 IVLGNPVAFTKPVLFTAAYMVIWNA 195 (208)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (208)
.+.+ +...+++...+.+|..
T Consensus 146 ---tg~~--~~~~~~Lf~~~~~Wq~ 165 (341)
T PLN02776 146 ---SGQL--DAGAMVLAAALYFWQM 165 (341)
T ss_pred ---cCCC--CHHHHHHHHHHHHHHH
Confidence 2233 3333344444555544
No 45
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.90 E-value=2.9e-22 Score=170.79 Aligned_cols=181 Identities=13% Similarity=0.072 Sum_probs=138.8
Q ss_pred HHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--ccccCCCCCcccCCc
Q 028504 11 FYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVH--IDKVNKPYLPLACGD 88 (208)
Q Consensus 11 ~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~--~D~~~~~~RPl~sG~ 88 (208)
|++.+||++...++.++..|..+|....+++++.. .++.++++.+.|+++|.+|||+|.+ .|+.+. + ...++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~-~~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-H-SIVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-C-Cccccc
Confidence 67899999999999999999988854334566543 2345679999999999999999987 487432 1 122333
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHH
Q 028504 89 FSMGEGLAITIASPLMAVAMGIM----LRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPF 164 (208)
Q Consensus 89 is~~~a~~~~~~l~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~ 164 (208)
.|+++....+..+..++...+.+ .+++.+.++.+ ++..++.||. | |+++|+++ +|++.++..+|+++..|.
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~-g~~~~~~Yt~--g-P~~l~y~g-LGE~~v~l~~G~l~v~g~ 151 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGL-CCFLGYLYQG--P-PFRLGYQG-LGEPICWLCFGPLAIAAA 151 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHhhcC--C-CcccCCCC-ccHHHHHHHHHHHHHHHH
Confidence 56899888888888877765433 34444455554 4469999999 6 89999766 699999999999988888
Q ss_pred HHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 165 FIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
++. |++ .+++..++.+...++.+.++.++||+||+||
T Consensus 152 ~yv-qt~------~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~ 188 (285)
T TIGR02235 152 LYA-QSQ------SFSLIPWKASILVGLATTLILFCSHFHQVED 188 (285)
T ss_pred HHH-hCC------cCcHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 766 442 3566677788889999999999999999997
No 46
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.89 E-value=3.3e-21 Score=163.78 Aligned_cols=181 Identities=18% Similarity=0.124 Sum_probs=121.8
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhccccCCCCCcccC
Q 028504 8 CDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVP-AIMMNNYANAINQLADVHIDKVNKPYLPLAC 86 (208)
Q Consensus 8 ~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~-~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~s 86 (208)
+|.++++.||++|+.+.++...|+++|.+ .+ ++.. ++..+. ....+.+-|.+|||+|+|.|+.|++++.. .
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~-~~--~~~~----l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~ 72 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAGG-EI--DWLF----VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-E 72 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHCC-CC--ChHH----HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-C
Confidence 36789999999999999999889998832 22 2211 111122 22223333466999999999998654332 5
Q ss_pred CccCHHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHH
Q 028504 87 GDFSMGEGLAITIASPLMAV-----AMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 161 (208)
Q Consensus 87 G~is~~~a~~~~~~l~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~ 161 (208)
|.+|++|.......+..++. .+....|++.+.++.+.. +.++.||. | |.++|++++.|+++.+..+.....
T Consensus 73 g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai-~~~~~YS~--~-p~rlk~~gl~d~~t~~~~f~~~~v 148 (282)
T PRK13105 73 GAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSV-FAVVAYSA--P-GLRFKERPFLDSLTSSTHFVSPAL 148 (282)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHhcC--C-CccccccchHHHHHHHHHHHHHHH
Confidence 88999998444444433332 233333555665665544 68999999 6 899999999999766655543344
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 162 FPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.|.++. ++. .+...++.++.+++++.+.++.||+||+|.
T Consensus 149 ~G~~~~------~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~ 187 (282)
T PRK13105 149 YGLVLA------GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVA 187 (282)
T ss_pred HHHHHh------hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHh
Confidence 454332 222 445566678888999999999999999984
No 47
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.88 E-value=3.9e-22 Score=166.19 Aligned_cols=169 Identities=21% Similarity=0.304 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc--CCCCCcccCCccCHHHHHHHHH
Q 028504 22 SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV--NKPYLPLACGDFSMGEGLAITI 99 (208)
Q Consensus 22 ~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~--~~~~RPl~sG~is~~~a~~~~~ 99 (208)
....+++.|...+... ..++... ....++.++.+.++|.+||+.|+|+|+. |||+||+++|++|++++...+.
T Consensus 3 ~~~~~~l~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~ 77 (257)
T PF01040_consen 3 LSFLPVLAGLALASGG--PFNWPIF---LLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFAL 77 (257)
T ss_pred HHHHHHHHHHHHHHcC--CCCHHHH---HHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHH
Confidence 3445555564444332 2333222 2344566799999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHHHHHHHHHHHHhcCCccc
Q 028504 100 ASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAF 179 (208)
Q Consensus 100 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~~~~~~~ 179 (208)
.+..+++.+++..+++...+..+.. +.++.||. |+++||++.++++.++..++..+..|.+.. ++. .
T Consensus 78 ~~~~l~l~l~~~~~~~~~~~~~~~~-~~~~~Ys~----~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~ 144 (257)
T PF01040_consen 78 ILLLLGLLLALLLGPWFLLILLLGF-LLGLLYSP----PLRLKRRPLWGELVVALVFGLLILLGAYAA------GGD--P 144 (257)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHH-HHHHHHhh----hhhhcceeccchhhHHHhhhHhhhhhhhhc------CCc--c
Confidence 9999999999888888887776666 46799994 789999999999999998887666665432 221 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 180 TKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
+.+.+....+..++..++...||++|+||
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 173 (257)
T PF01040_consen 145 PPPPFLLAIFFFLLIFAIMFFNDIRDIEG 173 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45555666666788888999999999986
No 48
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.87 E-value=5.3e-21 Score=162.91 Aligned_cols=185 Identities=17% Similarity=0.110 Sum_probs=126.9
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCccc
Q 028504 6 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLA 85 (208)
Q Consensus 6 ~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~ 85 (208)
+.+++++++.|+.+......++..+...... .+..+ . ....++.++.++++|++|||+|+|+|++|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~--~~~~~-~----~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLL--LGLPI-S----WLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHH--HcChh-H----HHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 4568899999999998887776654322100 11111 1 123467889999999999999999999999999988
Q ss_pred CCccCHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHhHhccCCCCCcc-ccccCchhHHHHHHHHHhHHHHHH
Q 028504 86 CGDFSMGEGLAITIASPLMAVAM-GIMLRSPPLVIGFIIWCIVGGAYSIDLPPLL-RWKGNPLMAAVTIISMNGLLLLFP 163 (208)
Q Consensus 86 sG~is~~~a~~~~~~l~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~-~lK~~~~~~~~~v~~~~g~~~~~g 163 (208)
|++...+.+..+..+.+.++..+ +...|++...++.+.. +.++.||. | |. ++||.|.+||+.++..+|..+..+
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~Ys~--~-~~~~lk~~p~~~~~~vg~~~g~~~~~~ 150 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPL-ILGILYSV--F-FKRRLKRIPLFKNLVVSLLWALSPLIL 150 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHHHHhC--h-hHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence 54444444433333333333333 2234777777776665 57999999 4 33 699999999999999999876665
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 164 FFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.++. ++ . .++...+....++.+...+.++.||+||+|+
T Consensus 151 ~~~~-~~----~--~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~ 188 (285)
T PRK12872 151 GVYY-YQ----L--TIFSLLLLYAVFIFLKSFIREIVFDIKDIEG 188 (285)
T ss_pred HHHh-cc----c--ccchHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 5443 11 1 1344455556666777788999999999985
No 49
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.86 E-value=3.6e-20 Score=157.64 Aligned_cols=183 Identities=16% Similarity=0.211 Sum_probs=109.8
Q ss_pred hHHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhhccccCC
Q 028504 3 VLNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPAD-FTPKLIIEAFKCMVPA--IMMNNYANAINQLADVHIDKVNK 79 (208)
Q Consensus 3 ~~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~-~~~~~~~~~l~~~l~~--~l~~~a~~~iNd~~D~~~D~~~~ 79 (208)
....+++.++++.||+++..+..+++.|..+|....++ +++.. +++++. +..+...|.+|||+|+|+||.|+
T Consensus 3 ~~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-----~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~p 77 (282)
T PRK12875 3 SLGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-----VALFAYFLFPANVFLYGVNDVFDADTDELNP 77 (282)
T ss_pred chHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-----HHHHHHHHHHHHHHHhcchhhhhhhccccCC
Confidence 45678999999999999999999999999998653222 23211 111222 22333456689999999999986
Q ss_pred CCC---ccc-CCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504 80 PYL---PLA-CGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 155 (208)
Q Consensus 80 ~~R---Pl~-sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~ 155 (208)
++| |++ +++.+...+ ......+++.+....++...... ++.+++.+.||. | |+|+|+++..+....+..
T Consensus 78 rk~~~r~~~~s~~~~~~~~---~~l~~~l~l~l~~~~~~~~~~~l-l~~i~~~~~YS~--p-P~rlk~~p~~~~~~~g~~ 150 (282)
T PRK12875 78 KKDREREVRYRGDRRVLVA---VALSGALALAFLLVLPPAAWPAL-LAFLVLSVEYSA--P-PLRFKTTPVLDSLSNGLY 150 (282)
T ss_pred CccCCCCccHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHcC--C-CccchhccHHHHHHHHHH
Confidence 544 443 222222211 11122333333334443333222 334468999999 7 999999998776543322
Q ss_pred HhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 156 NGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 156 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.....+.|+. ++ | . .++...+.. ..+++.++.+.||++|+|+
T Consensus 151 --~~~~~~~y~~-~t---g-~--~~~~~l~~a--~~l~~~~~~~in~i~Die~ 192 (282)
T PRK12875 151 --ILPGVAAYAL-VS---G-S--LPPLLAVAG--GWLWAMGMHTFSAIPDIEP 192 (282)
T ss_pred --HHHHHHHHHH-Hc---C-C--CcHHHHHHH--HHHHHHHHHHHHhccCHHH
Confidence 1233344333 22 1 1 334333333 3588899999999999985
No 50
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.84 E-value=3e-19 Score=152.41 Aligned_cols=139 Identities=15% Similarity=0.065 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccC
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSI 133 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~ 133 (208)
+.+.+...++|++|||+|+|+|++|+|+||.+ |++.+..++.+..++|+.+++..|+.. ++.+.. ..++.||.
T Consensus 65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~ll~~-l~g~lYS~ 137 (307)
T PRK13591 65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LAFLPF-ITGYLYSK 137 (307)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHH-HHHHHhcC
Confidence 34567788999999999999999999999986 899999999999999999988887643 344444 58999997
Q ss_pred C---CCCccccccCchhHHHHHHHHHhHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 134 D---LPPLLRWKGNPLMAAVTIISMNGLLLLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 134 ~---~P~p~~lK~~~~~~~~~v~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
| .|.|+++|+++.+||+.++..+|..+..+. +. ..... .+......+.....++.+++||+||+|+
T Consensus 138 Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~--~~~~~---~~~~~i~l~~~~~l~~~~iindirDiEG 206 (307)
T PRK13591 138 GIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GS--YCGSL---IPVGLIFLFFGVKLFINSCVYDFKDVKG 206 (307)
T ss_pred CCCCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hh--hhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 5 366779999999999999999997543221 11 11110 1111111122222356779999999985
No 51
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.65 E-value=7.3e-17 Score=133.69 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=113.3
Q ss_pred HHHHHHHHhhhchhhHHHHHHHHHH---HHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc--CC
Q 028504 5 NKKCDAFYRLTRPYSCVSIIAALLS---VSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKV--NK 79 (208)
Q Consensus 5 ~~~~~~~l~l~Rp~~~~~~~~~~~~---g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~--~~ 79 (208)
+++++.|.|++|.+.++++.+.... ..+.+.. .+..+..-..-+.+ .+.+++++++|.|||.+|+|+|++ +.
T Consensus 61 p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAd--ag~~p~~~mL~LFG-~GAllMRgAGCtINDlwDkdlD~KVeRt 137 (353)
T KOG1381|consen 61 PKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAAD--AGLLPSIKMLALFG-VGALLMRGAGCTINDLWDKDLDAKVERT 137 (353)
T ss_pred CccchhHHHHHhcCCCceeeeeecchHHHHHhccC--CCccchhHHHHHhc-ccHHHhccCCceehhhhhhhhhhhHhhh
Confidence 4678999999999988887654332 2233332 22222211111112 578999999999999999999986 34
Q ss_pred CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHH
Q 028504 80 PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLL 159 (208)
Q Consensus 80 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~ 159 (208)
+.||++||++|+++|..+-.+.+.+++.+...+|+.+..++.. .+...+.|+. +||.+++.++..+ +.
T Consensus 138 klRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~-sl~~v~~ypl-------~kr~TY~pq~vLg----lt 205 (353)
T KOG1381|consen 138 KLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGAS-SLALVITYPL-------MKRFTYWPQLVLG----LT 205 (353)
T ss_pred cccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhccc-ccccEEEeeh-------hhhcchhHHHHHh----hh
Confidence 7999999999999999999999999999988899988877753 3356677754 9999999997654 44
Q ss_pred HHHHHHHHHHHHHhcCCcccc
Q 028504 160 LLFPFFIHFQKIVLGNPVAFT 180 (208)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~ 180 (208)
+.+|.... ..+.++....|
T Consensus 206 fnwGAllG--w~A~~g~~~~s 224 (353)
T KOG1381|consen 206 FNWGALLG--WCALKGSLSPS 224 (353)
T ss_pred cchhhhhc--chhhcCccChh
Confidence 55665443 34455554433
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.48 E-value=5.6e-15 Score=125.14 Aligned_cols=148 Identities=16% Similarity=0.143 Sum_probs=121.4
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC--CCCc
Q 028504 6 KKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNK--PYLP 83 (208)
Q Consensus 6 ~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~--~~RP 83 (208)
+.++.|+||.||+.....+.+...|+.++.+. +++.- ++...+++.++++++|.+||+++.+.|.+|+ ++||
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~~---l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp 165 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFPT---LLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP 165 (409)
T ss_pred chHHHHHHhcccceEEEEeeeccccccccccC---CCcch---hHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence 34789999999999998888888999988653 33222 2234579999999999999999999999876 6999
Q ss_pred ccCCccCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHHH
Q 028504 84 LACGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLLF 162 (208)
Q Consensus 84 l~sG~is~~~a~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~~ 162 (208)
+++|++||.+|+.++.+....|+.+. +.+|+....++..-++++..+|+- +||.. ..|--+|.+.|.++++
T Consensus 166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP-------lKrih-iinTWvGavVGAIPPL 237 (409)
T KOG1380|consen 166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP-------LKRIH-IINTWVGAVVGAIPPL 237 (409)
T ss_pred cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc-------hhhhh-hhhhHHHHHhccCCcc
Confidence 99999999999999999999998764 458998888887777788899984 88865 5688889999988665
Q ss_pred HHHHH
Q 028504 163 PFFIH 167 (208)
Q Consensus 163 g~~~~ 167 (208)
=.|.+
T Consensus 238 MGwAA 242 (409)
T KOG1380|consen 238 MGWAA 242 (409)
T ss_pred chhhh
Confidence 55433
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=98.74 E-value=7.6e-10 Score=90.43 Aligned_cols=190 Identities=17% Similarity=0.129 Sum_probs=130.2
Q ss_pred HHHHHHHHHhhhchhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hccccCCCC
Q 028504 4 LNKKCDAFYRLTRPYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADV--HIDKVNKPY 81 (208)
Q Consensus 4 ~~~~~~~~l~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~--~~D~~~~~~ 81 (208)
..+|.+.|+-..||+....++.++..|..+|..+...-++... ..++..++.+..+.++|..|.|+|. .+|++..-+
T Consensus 57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~-~~fl~a~avlavh~agnlvntyfdf~kgid~kkadd 135 (359)
T KOG4581|consen 57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLA-TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADD 135 (359)
T ss_pred HHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHH-HHHHHHhhheeeecccchhhhhhhhhhccccccccc
Confidence 3467899999999999999999999999988753222233222 2233445777889999999999997 489887789
Q ss_pred CcccCCccCHHHHHHHHHHHHHHHHHH---HHHhhHH---HHHHHHHHHHHHhHhccCCCCCccccccCchhHHHHHHHH
Q 028504 82 LPLACGDFSMGEGLAITIASPLMAVAM---GIMLRSP---PLVIGFIIWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISM 155 (208)
Q Consensus 82 RPl~sG~is~~~a~~~~~~l~~~~~~l---~~~~~~~---~~~~~~~~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~ 155 (208)
|.++...+.+.+...++..+..+|... ...+++. -+.+...++..-.+.|+.| ..+| +-.+|.+.+-+.
T Consensus 136 rtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg----igfk-yialgdliili~ 210 (359)
T KOG4581|consen 136 RTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG----IGFK-YIALGDLIILIL 210 (359)
T ss_pred hhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc----cceE-EEeccCEEEEEe
Confidence 999999999999999999888877543 2334443 2333344444567899985 3577 456788877777
Q ss_pred HhHH-HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 028504 156 NGLL-LLFPFFIHFQKIVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSEI 207 (208)
Q Consensus 156 ~g~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~~ 207 (208)
+|++ ..+.+. .|.+.. .+-+. -.++.+.+-+-++.+.||.||.+
T Consensus 211 fgpiavlfaf~--~q~g~l----~~~~l--~yaiplalnteailhsnntrd~d 255 (359)
T KOG4581|consen 211 FGPIAVLFAFA--IQTGHL----AIFPL--GYAIPLALNTEAILHSNNTRDAD 255 (359)
T ss_pred echHHHHHHHH--HhcCce----eEEee--hheeeeccchHHHhccCCCcccc
Confidence 7765 222222 233221 12111 12345556677889999999987
No 54
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=94.38 E-value=0.19 Score=42.62 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504 55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGD 88 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~ 88 (208)
..++....-.++||..|+|.||.+ .|.=|..-|+
T Consensus 169 ~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 169 FIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 334445566689999999999975 4677776665
No 55
>PRK13591 ubiA prenyltransferase; Provisional
Probab=94.20 E-value=0.31 Score=42.22 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=38.0
Q ss_pred HhhhhhhhhccccC-CCCCcccCCccCHHHHHHHHHHHHHHHH---HHHHH---h--hHHHHHHHHHHHHHHhHhccC
Q 028504 65 AINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAV---AMGIM---L--RSPPLVIGFIIWCIVGGAYSI 133 (208)
Q Consensus 65 ~iNd~~D~~~D~~~-~~~RPl~sG~is~~~a~~~~~~l~~~~~---~l~~~---~--~~~~~~~~~~~~~~~~~~Ys~ 133 (208)
++||+.|.|.||.+ ++.-|+.=|+ +.+..+...+...+. +.+.. + .+...+.+++..+.+...|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG~---~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLGE---QKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEECH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 68999999999986 4667766554 333333333332221 22222 2 233344445555578899998
No 56
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=94.14 E-value=0.26 Score=42.91 Aligned_cols=51 Identities=18% Similarity=0.103 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHHH
Q 028504 53 MVPAIMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMAV 106 (208)
Q Consensus 53 ~l~~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~~ 106 (208)
.+...+..+.....||+.|+|.||.+. ++-|. ++.+|.+..+...+...+.
T Consensus 195 slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~a~ 246 (317)
T PRK13387 195 SLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYASY 246 (317)
T ss_pred HHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHHHH
Confidence 345556667778899999999999864 45554 3445566555555555443
No 57
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=93.29 E-value=0.77 Score=39.04 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGD 88 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~ 88 (208)
+..++-+.+-..+||..|+|.|+.. .|.-|+.-|+
T Consensus 165 ~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 165 IGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 3445556666789999999999864 5788887773
No 58
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=93.29 E-value=0.46 Score=41.13 Aligned_cols=46 Identities=7% Similarity=-0.096 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHH
Q 028504 57 IMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMA 105 (208)
Q Consensus 57 ~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~ 105 (208)
.+..+.....||+-|+|.||.+. ++-|.- +.++.+..+...+...+
T Consensus 184 gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~---lG~~~a~~ly~~l~~~a 230 (304)
T PRK07419 184 GLATSLILFCSHFHQVEDDLAAGKRSPIVR---LGTKRGAQLLPWIVGLI 230 (304)
T ss_pred HHHHHHHHHHcCCcchhhHHHcCCcceeee---echHhHHHHHHHHHHHH
Confidence 35566777899999999999864 455543 44455554444444443
No 59
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=93.11 E-value=1.2 Score=37.98 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCccC
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFS 90 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is 90 (208)
++.++-+.+-...|++.|+|.||.. .|.-|+.-|+-+
T Consensus 167 ~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~ 204 (281)
T TIGR01474 167 LANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNT 204 (281)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhh
Confidence 4555666677789999999999975 578888777543
No 60
>PLN02922 prenyltransferase
Probab=92.60 E-value=0.68 Score=40.25 Aligned_cols=49 Identities=8% Similarity=0.008 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHH
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMA 105 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~ 105 (208)
+...+..+.....||+.|+|.||++. ++-|+ ++.++.+..+...+...+
T Consensus 195 lp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~~ 244 (315)
T PLN02922 195 VLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRWAVLLL 244 (315)
T ss_pred HHHHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHHHHHHH
Confidence 34445666777899999999999875 45554 344555555554444444
No 61
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=92.33 E-value=0.92 Score=39.19 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCccCHHHHHHHHHHHH
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASP 102 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is~~~a~~~~~~l~ 102 (208)
++.++-+.+-.++|+..|+|-|++. .|+-|+-=|+-+.+-+..+.....
T Consensus 184 ~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~~~~~~~~~~v 233 (300)
T PRK13106 184 IGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGKWALTFAGLNQLFSV 233 (300)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHhhhHHHHHHHHHHHHH
Confidence 3455566666789999999999865 477787666444443333333333
No 62
>PLN00012 chlorophyll synthetase; Provisional
Probab=92.26 E-value=0.87 Score=40.60 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=25.5
Q ss_pred HHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504 57 IMMNNYANAINQLADVHIDKVN-KPYLPLACGDF 89 (208)
Q Consensus 57 ~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i 89 (208)
.+...+-...||+.|+|.||+. +|.-|+.-|+-
T Consensus 262 ~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~ 295 (375)
T PLN00012 262 SIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVE 295 (375)
T ss_pred HHHHHHHHHHhhhcchhhHHHcCCcccceeechH
Confidence 3456667789999999999875 57788777753
No 63
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=91.88 E-value=1.1 Score=38.66 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHH
Q 028504 52 CMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMA 105 (208)
Q Consensus 52 ~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~ 105 (208)
..+......+..+..|+..|.|.|++|.|+-+. =++..+.+..+...+...+
T Consensus 181 ~slp~gil~~~Il~aNNirDie~D~~~gk~TLa--vrLG~~~~~~l~~~l~~~a 232 (303)
T COG1575 181 PSLPVGILIANILLANNLRDIEEDIRNGKYTLA--VRLGRKNARKLYAALLVVA 232 (303)
T ss_pred HHHHHHHHHHHHHHhcccccchhHHhcCCccee--eeeccHhHHHHHHHHHHHH
Confidence 335566677778889999999999998764332 2445555555444444444
No 64
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=91.80 E-value=5.1 Score=34.28 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCccCHHHHHHHHHHHHHHHHHHHHH
Q 028504 55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAVAMGIM 111 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~ 111 (208)
+..+.+.+...+||+.|+|.||+. +|.-|. ++..+.+..+...+..++..+-..
T Consensus 173 a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~ 227 (282)
T PRK12875 173 GGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAA 227 (282)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHH
Confidence 445666677889999999999975 455554 444566666666666555544333
No 65
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=91.68 E-value=0.96 Score=38.75 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhh
Q 028504 55 PAIMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLR 113 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~ 113 (208)
+..+...+..++||+-|.|.||.+. +.=|. ++.+|.+..++..+.+++.++....+
T Consensus 168 ~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 168 AFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567778999999999999764 45553 56678888888887777765544433
No 66
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=91.53 E-value=1 Score=38.54 Aligned_cols=49 Identities=6% Similarity=-0.116 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHHH
Q 028504 55 PAIMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMAV 106 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~~ 106 (208)
...+..++....||+-|+|.||.+. ++-|+ ++.++.+..+...+...+.
T Consensus 169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~~y 218 (285)
T TIGR02235 169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVISLSY 218 (285)
T ss_pred HHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHHHHH
Confidence 3345667777899999999999864 45554 4445666555555555443
No 67
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=91.36 E-value=1.1 Score=38.06 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504 55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGD 88 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~ 88 (208)
..++.+.+-...||+.|+|.|+.. .|.-|+.-|+
T Consensus 162 ~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~ 196 (279)
T PRK09573 162 CAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGI 196 (279)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence 334445566678999999999964 5777776664
No 68
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=91.23 E-value=1.6 Score=37.88 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504 58 MMNNYANAINQLADVHIDKVN-KPYLPLACGDF 89 (208)
Q Consensus 58 l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i 89 (208)
+...+....||+.|+|.||.. +|.-|+.-|+-
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~ 232 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEK 232 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCCcccceeEcHH
Confidence 345556789999999999975 57777766653
No 69
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=90.82 E-value=1.9 Score=36.93 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504 55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF 89 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i 89 (208)
..++-+.+-..+|++.|+|-||+. .|.-|+.-|+-
T Consensus 170 ~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~ 205 (291)
T PRK12886 170 AVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVN 205 (291)
T ss_pred HHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCch
Confidence 334445555578889999999864 57888877763
No 70
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=90.81 E-value=0.81 Score=40.07 Aligned_cols=37 Identities=19% Similarity=0.110 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCccCH
Q 028504 55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSM 91 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is~ 91 (208)
...+...+-..+||+.|+|-||.. +++-|+.=|+=..
T Consensus 188 ~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a 225 (331)
T PRK12392 188 LNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNT 225 (331)
T ss_pred HHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhH
Confidence 344556666779999999999975 5677776564433
No 71
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=90.80 E-value=1.6 Score=37.74 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhhhhhhccccC-CCCCcccCCccCHHHHHHHHHHHHH
Q 028504 57 IMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPL 103 (208)
Q Consensus 57 ~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is~~~a~~~~~~l~~ 103 (208)
.+...+....||+.|+|.||++ +|.-|+.-| ++.+......+..
T Consensus 193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG---~~~a~~~~~~l~~ 237 (306)
T TIGR02056 193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFG---IETAAWICVGAID 237 (306)
T ss_pred HHHHHHHHHHHHccChHHHHHcCCcCcchhcC---hHHHHHHHHHHHH
Confidence 3455666789999999999975 466666555 3455444444333
No 72
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=90.50 E-value=1.2 Score=37.98 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCccCHHHHHHHHHHHHHHHH
Q 028504 55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLMAV 106 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is~~~a~~~~~~l~~~~~ 106 (208)
...+........||+.|+|.||.+ +++-|..=| .+.+..+...+..++.
T Consensus 176 ~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG---~~~a~~~~~~l~~~~~ 225 (293)
T PRK06080 176 PCGLLIGAVLLANNIRDIETDRENGKNTLAVRLG---DKNARRLHAALLALAY 225 (293)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeEC---cHhHHHHHHHHHHHHH
Confidence 344556667789999999999976 455554434 4555544444444443
No 73
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=89.42 E-value=2.6 Score=35.65 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504 55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGD 88 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~ 88 (208)
..++.+.+-...||+.|+|.||.+ .|.=|+.-|+
T Consensus 163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~ 197 (279)
T PRK12884 163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE 197 (279)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence 334555566789999999999875 4667765555
No 74
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=89.36 E-value=2.3 Score=36.10 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=23.0
Q ss_pred HHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504 58 MMNNYANAINQLADVHIDKVN-KPYLPLACGD 88 (208)
Q Consensus 58 l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~ 88 (208)
+...+....||+.|+|.||.+ ++.-|+.=|+
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~ 203 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV 203 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEcH
Confidence 345556789999999999975 4667765555
No 75
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=89.29 E-value=2.4 Score=36.06 Aligned_cols=36 Identities=14% Similarity=0.013 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF 89 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i 89 (208)
+..++-+.+-...|++.|+|.|+.+ .|.-|+.-|+-
T Consensus 172 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~ 208 (285)
T PRK12847 172 IGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNK 208 (285)
T ss_pred HHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccc
Confidence 3445566666689999999999975 47777766653
No 76
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=88.50 E-value=3 Score=35.46 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCccC
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDFS 90 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is 90 (208)
+...+-+..-...|++.|+|-||+. .|.-|+.-|+=+
T Consensus 169 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~ 206 (282)
T PRK12848 169 LANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYD 206 (282)
T ss_pred HHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcccc
Confidence 4555556666678999999999975 477787766543
No 77
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=88.47 E-value=3.2 Score=35.45 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF 89 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i 89 (208)
+...+-+.+-..+|++.|+|-||.. .|+-|+.-|+-
T Consensus 166 ~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~ 202 (284)
T PRK12888 166 LAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVR 202 (284)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCch
Confidence 3445556677899999999999975 46777666653
No 78
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=87.83 E-value=3.5 Score=35.54 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF 89 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i 89 (208)
+...+-+..-...||+.|+|.|+.+ .|.-|+.-|+-
T Consensus 182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~ 218 (297)
T PRK12871 182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMK 218 (297)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechH
Confidence 3445556667789999999999975 57888877764
No 79
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=87.67 E-value=13 Score=31.92 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHH
Q 028504 58 MMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEG 94 (208)
Q Consensus 58 l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a 94 (208)
+..+.....||+.|+|.||.+. ++-|+ ++.++.+
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a 216 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGA 216 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhH
Confidence 4456677899999999999764 44443 4555555
No 80
>PRK11383 hypothetical protein; Provisional
Probab=87.62 E-value=8.4 Score=29.55 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=22.8
Q ss_pred HHhcCCccccHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 028504 171 IVLGNPVAFTKPVLFTAAYMVIWNAAIAFVKVTNSE 206 (208)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D~ 206 (208)
+...++...+.-.+....++....-++.+-||+||.
T Consensus 93 GLwNA~l~lsEKGfY~~af~lsLFgai~vQKn~RD~ 128 (145)
T PRK11383 93 GLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDA 128 (145)
T ss_pred HHhcCCcchhhhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344556666665555544444444568999999997
No 81
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=87.03 E-value=3.8 Score=34.64 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhhhhhccccCC-CCCcccCCc
Q 028504 57 IMMNNYANAINQLADVHIDKVNK-PYLPLACGD 88 (208)
Q Consensus 57 ~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~ 88 (208)
++...+-..+||+.|.|-||.+. |.-|+.-|+
T Consensus 167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~ 199 (276)
T PRK12882 167 ALATLAREIIKDVEDIEGDRAEGARTLPILIGV 199 (276)
T ss_pred HHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence 34455667899999999999754 677765555
No 82
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=86.52 E-value=3.7 Score=34.72 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=23.1
Q ss_pred HHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504 58 MMNNYANAINQLADVHIDKVN-KPYLPLACGD 88 (208)
Q Consensus 58 l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~ 88 (208)
+.+.+-...||+.|+|.||+. .|.=|+.-|+
T Consensus 165 l~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 165 LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 344455678999999999975 5777876665
No 83
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=86.33 E-value=4.2 Score=34.82 Aligned_cols=39 Identities=8% Similarity=0.041 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHH
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMG 92 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~ 92 (208)
+..++-+.+-..+|++.|+|-|++.. |.-|+.-|+-+..
T Consensus 173 ~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~ 212 (290)
T PRK12870 173 AATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPE 212 (290)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHH
Confidence 45566777778899999999998754 6777766655444
No 84
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=85.62 E-value=21 Score=30.29 Aligned_cols=72 Identities=24% Similarity=0.191 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhhhchhhHH----HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhhccc-
Q 028504 3 VLNKKCDAFYRLTRPYSCV----SIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYAN-AINQLADVHIDK- 76 (208)
Q Consensus 3 ~~~~~~~~~l~l~Rp~~~~----~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~-~iNd~~D~~~D~- 76 (208)
+..+..+.++|+.||.++. ........+. -.... .....+ ..++....-......| ....=.|++.+|
T Consensus 8 ~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~-~~~~~---~~~~~l--~~l~~~~~~~ag~~iND~~D~eiD~~n~rt 81 (289)
T COG0382 8 NKLKALLKLLRLDRPIFNLLLLLPALLGLLLAA-SGLPS---LKLLLL--AFLAFFLARSAGYVINDLADREIDRINPRT 81 (289)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-cCCch---HHHHHH--HHHHHHHHHHHhHHHHHHhhhhccCCCCCc
Confidence 4466778899999998754 3333333332 11111 111111 1122333444444455 455558998776
Q ss_pred cCCC
Q 028504 77 VNKP 80 (208)
Q Consensus 77 ~~~~ 80 (208)
.++|
T Consensus 82 ~~RP 85 (289)
T COG0382 82 KNRP 85 (289)
T ss_pred cCCC
Confidence 5664
No 85
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=85.45 E-value=4.5 Score=34.64 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHH
Q 028504 57 IMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMA 105 (208)
Q Consensus 57 ~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~ 105 (208)
.+..+.....||+.|+|.|+.+. ++-|. ++..+.+..+...+...+
T Consensus 174 g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~l~~~a 220 (284)
T TIGR00751 174 GLLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQGLLAVA 220 (284)
T ss_pred HHHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHHHHHHH
Confidence 34556666799999999999864 44454 444566655555554444
No 86
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=83.62 E-value=10 Score=32.82 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504 55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGD 88 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~ 88 (208)
..++...+-..+||+.|+|-||.+ ++.-|+-=|+
T Consensus 190 ~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~ 224 (308)
T PRK12887 190 FVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGK 224 (308)
T ss_pred HHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhH
Confidence 445566677789999999999975 4566654443
No 87
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=83.53 E-value=19 Score=30.80 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF 89 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i 89 (208)
+...+-+.+-..+|++.|+|.||+. .|.-|+.-|+-
T Consensus 174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~ 210 (291)
T PRK12874 174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEK 210 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhH
Confidence 3445666666789999999999864 57778776663
No 88
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=78.94 E-value=14 Score=32.10 Aligned_cols=35 Identities=17% Similarity=0.013 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCcc
Q 028504 55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGDF 89 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~i 89 (208)
..++-+..-..++++.|+|-||.. .|.-|+.-|+-
T Consensus 200 ~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~ 235 (314)
T PRK12878 200 GSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDH 235 (314)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchh
Confidence 445555566677899999999874 57788776763
No 89
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=78.64 E-value=8.1 Score=31.57 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhhhhhhhccccC
Q 028504 57 IMMNNYANAINQLADVHIDKVN 78 (208)
Q Consensus 57 ~l~~~a~~~iNd~~D~~~D~~~ 78 (208)
.+........||+.|+|.|++.
T Consensus 156 ~~~~~~~~~~~~~~D~~~D~~~ 177 (257)
T PF01040_consen 156 FLLIFAIMFFNDIRDIEGDRKA 177 (257)
T ss_pred HHHHHHHHHHHHhhhHHHHHHc
Confidence 4555566678899999999764
No 90
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=78.53 E-value=43 Score=28.96 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhhhhhccccCC-CCCcccCCccC
Q 028504 57 IMMNNYANAINQLADVHIDKVNK-PYLPLACGDFS 90 (208)
Q Consensus 57 ~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is 90 (208)
.+..++=.++.+..|+|-||... |.-|+.-|+-+
T Consensus 182 ~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~ 216 (300)
T PRK12876 182 GMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKK 216 (300)
T ss_pred HHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchh
Confidence 33344445678899999999764 67776666554
No 91
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=77.44 E-value=17 Score=31.18 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCC-CCCcccCCc
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVNK-PYLPLACGD 88 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~ 88 (208)
++.++-+.+=.++.++.|+|-||+.. ++-|+-=|+
T Consensus 166 ~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~ 201 (286)
T PRK12895 166 ISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGI 201 (286)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCC
Confidence 45555556667899999999999754 566654443
No 92
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=70.63 E-value=69 Score=27.59 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhhhhhhccccCC-CCCcccCCcc
Q 028504 55 PAIMMNNYANAINQLADVHIDKVNK-PYLPLACGDF 89 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~i 89 (208)
+.++-+.+=..+-.+.|+|-|++.. |.-|..-|+-
T Consensus 178 ~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~ 213 (294)
T PRK12873 178 ATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN 213 (294)
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh
Confidence 3344444444666778999999765 7788777763
No 93
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=68.98 E-value=16 Score=33.71 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHH
Q 028504 50 FKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIM-------LRSPPLVIGFI 122 (208)
Q Consensus 50 l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~-------~~~~~~~~~~~ 122 (208)
.+...++..+..++.+-+|++|+-+|+-...++++ +.++....+..+++..++.. +-.+.+.+. .
T Consensus 356 aLstaaGL~l~iasavsHDiY~~vik~~ase~~~v-------~vaRi~~v~~~vva~~lgi~~~gnVaflVa~AF~lA-a 427 (529)
T COG4147 356 ALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKEV-------RVARIAVVILGVVAILLGILPPGNVAFLVALAFALA-A 427 (529)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHhCCCCCcccee-------hhHHHHHHHHHHHHHHheecCCccHHHHHHHHHHHH-H
Confidence 34456677788888889999999887653223332 33444444555555544432 111222222 1
Q ss_pred HHHHHhHhccCCCCCccccccCchhHHHHHHHHHhHHHH
Q 028504 123 IWCIVGGAYSIDLPPLLRWKGNPLMAAVTIISMNGLLLL 161 (208)
Q Consensus 123 ~~~~~~~~Ys~~~P~p~~lK~~~~~~~~~v~~~~g~~~~ 161 (208)
.+.+=..+|+. .+||..--|.+ .+...|+...
T Consensus 428 Sa~fPvivlgl------fWKr~n~~GAi-~G~~~GL~~t 459 (529)
T COG4147 428 SANFPVIVLGL------FWKRLNTAGAI-AGMLLGLIVT 459 (529)
T ss_pred HcccchhhHHH------HHhhccHHhHH-HHHHHHHHHH
Confidence 22234556666 57877655543 3334454433
No 94
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=68.38 E-value=19 Score=30.57 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=15.9
Q ss_pred hhhhhhhhccccC-CCCCcccCCc
Q 028504 66 INQLADVHIDKVN-KPYLPLACGD 88 (208)
Q Consensus 66 iNd~~D~~~D~~~-~~~RPl~sG~ 88 (208)
-|++.|+|-|++. .|.-|+.-|+
T Consensus 178 ~l~~~d~edd~~~G~~tlpv~~G~ 201 (279)
T PRK12869 178 SLALKYREDYRRAGVPMLPAVVGE 201 (279)
T ss_pred HHHHHhHHhHHHcCCeecceeecH
Confidence 3678899888754 4667776554
No 95
>PLN02878 homogentisate phytyltransferase
Probab=67.47 E-value=27 Score=29.94 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhhhhhhccccC-CCCCcccCCccCHHHHHHHHHHHHHH
Q 028504 57 IMMNNYANAINQLADVHIDKVN-KPYLPLACGDFSMGEGLAITIASPLM 104 (208)
Q Consensus 57 ~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~is~~~a~~~~~~l~~~ 104 (208)
++...+-.++||+-|.|-||.. .++-|+.=| ++.+..+...+..+
T Consensus 166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG---~~~~~~i~~~ll~~ 211 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVRLG---QKRVFWLCVNLLEM 211 (280)
T ss_pred HHHHHHHHHHhhCcCchhHHHCCCceechhhC---hHHHHHHHHHHHHH
Confidence 4445556699999999999975 466665444 34444444444333
No 96
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=61.76 E-value=1e+02 Score=26.35 Aligned_cols=26 Identities=23% Similarity=0.082 Sum_probs=18.7
Q ss_pred HHhhhhhhhhccccCC-CCCcccCCcc
Q 028504 64 NAINQLADVHIDKVNK-PYLPLACGDF 89 (208)
Q Consensus 64 ~~iNd~~D~~~D~~~~-~~RPl~sG~i 89 (208)
..+....|+|-||+.. |.-|+.-|+-
T Consensus 183 d~~ya~~D~e~D~~~Gi~sl~v~~G~~ 209 (289)
T PLN02809 183 DTIYAHQDKEDDLKVGVKSTALRFGDD 209 (289)
T ss_pred HHHHHHhchhhHHhCCCcccchhhcHH
Confidence 3556667999998754 7777776664
No 97
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=61.74 E-value=41 Score=28.37 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=14.3
Q ss_pred hhhhhhccccC-CCCCcccCCc
Q 028504 68 QLADVHIDKVN-KPYLPLACGD 88 (208)
Q Consensus 68 d~~D~~~D~~~-~~~RPl~sG~ 88 (208)
.+.|+|.||.. .|.-|+.-|+
T Consensus 179 a~~~~~dd~~~G~~tl~v~~G~ 200 (280)
T TIGR01473 179 ALKYKDDYRAAGIPMLPVVKGE 200 (280)
T ss_pred HHHhhhhHHHCCCccCCcccCH
Confidence 45788888764 4677766665
No 98
>PRK13592 ubiA prenyltransferase; Provisional
Probab=61.54 E-value=20 Score=31.01 Aligned_cols=27 Identities=0% Similarity=-0.182 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccC
Q 028504 182 PVLFTAAYMVIWNAAIAFVKVTNSEIE 208 (208)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~k~~~D~~~ 208 (208)
.....+....+++.+-.+.||+.|.|.
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EI 73 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYET 73 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 333333334455667889999999973
No 99
>PLN02776 prenyltransferase
Probab=60.75 E-value=1.2e+02 Score=26.79 Aligned_cols=63 Identities=13% Similarity=-0.116 Sum_probs=32.6
Q ss_pred hhhhcccc-CCCCCcccC--CccCHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHhHhccC
Q 028504 70 ADVHIDKV-NKPYLPLAC--GDFSMGEGLAITIASPLMAVAMGIM--LRSPPLVIGFIIWCIVGGAYSI 133 (208)
Q Consensus 70 ~D~~~D~~-~~~~RPl~s--G~is~~~a~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~Ys~ 133 (208)
.|+|-|+. .-|.-|++. |+-+.++.......+..++++...+ .+.+..+.+.+.. .....|+.
T Consensus 174 ~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~~~~~a~~l~-~~~l~~~~ 241 (341)
T PLN02776 174 MCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLT-AYLAASAA 241 (341)
T ss_pred HhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHH
Confidence 44453332 336667765 4556667777777777766654322 2334444443333 24444554
No 100
>COG4125 Predicted membrane protein [Function unknown]
Probab=59.41 E-value=65 Score=24.68 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=21.5
Q ss_pred HHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHH-HHHhh
Q 028504 63 ANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAM-GIMLR 113 (208)
Q Consensus 63 ~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l-~~~~~ 113 (208)
+.++|-.|..-.|+.+++.+-.=+=++...+|..+=..+.+..+-+ ++++|
T Consensus 53 Am~WN~vyN~lFd~~~rr~~~~rT~~vRv~HAv~FE~gliv~lvP~iAw~L~ 104 (149)
T COG4125 53 AMIWNFVYNLLFDRAERRMGTRRTLAVRVAHAVGFELGLIVILVPLIAWWLG 104 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHhhHHHHHHHH
Confidence 3344444444444433322210012333444555555555555433 45544
No 101
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=53.82 E-value=53 Score=20.61 Aligned_cols=31 Identities=10% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHHhhcCCc
Q 028504 175 NPVAFTKPVLFTAAYMVIWNAAIAFVKVTNS 205 (208)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~D 205 (208)
.|...+.--++...++....-+..+.|+.||
T Consensus 23 ~~~~l~~KGy~~~~~l~~l~s~~tl~K~vRD 53 (53)
T PF05360_consen 23 APLDLSEKGYYAMGLLFLLFSAFTLQKTVRD 53 (53)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 3444555556666666666677899999999
No 102
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=53.39 E-value=1.1e+02 Score=26.09 Aligned_cols=34 Identities=12% Similarity=-0.047 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhhhhhhhccccC-CCCCcccCCc
Q 028504 55 PAIMMNNYANAINQLADVHIDKVN-KPYLPLACGD 88 (208)
Q Consensus 55 ~~~l~~~a~~~iNd~~D~~~D~~~-~~~RPl~sG~ 88 (208)
..++-+..-...|.+.|+|-||.. -|.-|+.-|+
T Consensus 175 ~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~ 209 (296)
T PRK04375 175 IIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGI 209 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCH
Confidence 334444444556678999989654 3677776554
No 103
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=52.04 E-value=15 Score=24.61 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccCC
Q 028504 51 KCMVPAIMMNNYANAINQLADVHIDKVNK 79 (208)
Q Consensus 51 ~~~l~~~l~~~a~~~iNd~~D~~~D~~~~ 79 (208)
+++++.+++...++..|=|+-++.||++.
T Consensus 36 IGvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 36 IGVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 45678888899999999999999998653
No 104
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=46.27 E-value=33 Score=21.90 Aligned_cols=24 Identities=21% Similarity=0.193 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHH-Hhhhhhhhhccc
Q 028504 53 MVPAIMMNNYAN-AINQLADVHIDK 76 (208)
Q Consensus 53 ~l~~~l~~~a~~-~iNd~~D~~~D~ 76 (208)
+++.+...++|+ .+-||+.+++|+
T Consensus 14 vVcaLYLvsGGyk~IRnY~r~Kid~ 38 (59)
T PF07125_consen 14 VVCALYLVSGGYKVIRNYFRRKIDD 38 (59)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345555556666 699999998875
No 105
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=44.14 E-value=2.4e+02 Score=25.32 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhhhhhhh
Q 028504 57 IMMNNYANAINQLADVH 73 (208)
Q Consensus 57 ~l~~~a~~~iNd~~D~~ 73 (208)
.++++--..+|++++.+
T Consensus 115 ~~~~~ie~a~N~Iw~v~ 131 (412)
T PRK04214 115 ILLHTIEQTFNRIWRVN 131 (412)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 34455556788888754
No 106
>PRK13595 ubiA prenyltransferase; Provisional
Probab=41.03 E-value=1.2e+02 Score=26.20 Aligned_cols=54 Identities=13% Similarity=0.071 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhhhhhhccccCC-CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhh
Q 028504 57 IMMNNYANAINQLADVHIDKVNK-PYLPLACGDFSMGEGLAITIASPLMAVAMGIMLR 113 (208)
Q Consensus 57 ~l~~~a~~~iNd~~D~~~D~~~~-~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~ 113 (208)
.+-..+-.++-|+.|.|-||... +.-|. +...|.+..++..+.+++..+-..++
T Consensus 179 ~~w~~g~dii~ai~DiegDr~~Gi~Slpv---~lG~r~a~~~a~~~~~~a~~~~~~~~ 233 (292)
T PRK13595 179 MAWSVGKHAFDAAQDIPADRAAGTRTVAT---TLGVRGTALYALAWFLLAGALLWPVS 233 (292)
T ss_pred HHHHHHHHHHHhccChHhHHHcCCeechH---HhCcHhHHHHHHHHHHHHHHHHHHhc
Confidence 34446677888888999999754 45554 44557777777777777766655544
No 107
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=36.86 E-value=1.2e+02 Score=22.35 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhhh--------hhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 028504 54 VPAIMMNNYANAINQL--------ADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMGIMLRSPPL 117 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~--------~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~ 117 (208)
+++....+-+|++-|. .|+-.+|..-|.-.+-..+...++.......=-.+|+.++-.++..++
T Consensus 35 iStmAAAalGN~vSDv~Gi~~~~~vE~~~~rlg~~~P~Lt~~Q~~~~~~r~a~~~G~~~Gv~iGClLGM~PL 106 (111)
T PF10507_consen 35 ISTMAAAALGNLVSDVAGIGLGGYVERLAQRLGLKAPVLTPAQLNSRSTRWASNLGRAIGVTIGCLLGMFPL 106 (111)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777774 344444433222223333333344444444445555666655554444
No 108
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=36.61 E-value=2.7e+02 Score=23.82 Aligned_cols=10 Identities=20% Similarity=-0.097 Sum_probs=6.4
Q ss_pred HHhHhccCCCC
Q 028504 126 IVGGAYSIDLP 136 (208)
Q Consensus 126 ~~~~~Ys~~~P 136 (208)
....+|... |
T Consensus 203 ~f~~ly~~l-P 212 (303)
T COG1295 203 GFFLLYRFL-P 212 (303)
T ss_pred HHHHHHHHc-C
Confidence 466777764 6
No 109
>COG3462 Predicted membrane protein [Function unknown]
Probab=31.80 E-value=2.1e+02 Score=21.04 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 028504 182 PVLFTAAYMVIW 193 (208)
Q Consensus 182 ~~~~~~~~~~~~ 193 (208)
++.++.+|+..+
T Consensus 60 vli~lvvfm~~~ 71 (117)
T COG3462 60 VLIFLVVFMFYI 71 (117)
T ss_pred HHHHHHHHHHHH
Confidence 344444454443
No 110
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=31.57 E-value=2.5e+02 Score=21.90 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhhhh
Q 028504 54 VPAIMMNNYANAINQLA 70 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~ 70 (208)
++....-+.++.+++|.
T Consensus 35 la~~vA~a~Sma~GeYv 51 (169)
T TIGR00267 35 LGGGVANGMSNAFGAFT 51 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666777888887
No 111
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=30.93 E-value=1.6e+02 Score=26.61 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccc---CCCCCcccCCccCHH
Q 028504 54 VPAIMMNNYANAINQLADVHIDKV---NKPYLPLACGDFSMG 92 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~---~~~~RPl~sG~is~~ 92 (208)
.+.+........+|++.+...|+. +.-+||.|.+.=+.+
T Consensus 332 ~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~IG 373 (452)
T PF04547_consen 332 SAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASSIG 373 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccchh
Confidence 345556666778999999999985 336799998766543
No 112
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=29.93 E-value=89 Score=19.24 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=13.1
Q ss_pred HHHHHhhhhhhhhccc
Q 028504 61 NYANAINQLADVHIDK 76 (208)
Q Consensus 61 ~a~~~iNd~~D~~~D~ 76 (208)
-...++|.+.|++.|-
T Consensus 19 lyl~ald~~CDQg~~F 34 (47)
T PRK10299 19 LWAQVFNMMCDQDVQF 34 (47)
T ss_pred HHHHHHHHHhcCCccc
Confidence 5667899999999774
No 113
>COG4682 Predicted membrane protein [Function unknown]
Probab=29.54 E-value=2.4e+02 Score=21.09 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhcCCcc
Q 028504 187 AAYMVIWNAAIAFVKVTNSE 206 (208)
Q Consensus 187 ~~~~~~~~~~~~~~k~~~D~ 206 (208)
+.++++|. ++...||.||.
T Consensus 110 affv~lfG-a~~~~k~~~d~ 128 (128)
T COG4682 110 AFFVSLFG-AMAVQKNTRDA 128 (128)
T ss_pred HHHHHHHh-HHHHHhhccCC
Confidence 44555554 58899999994
No 114
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=29.29 E-value=4.3e+02 Score=23.84 Aligned_cols=79 Identities=13% Similarity=0.001 Sum_probs=39.6
Q ss_pred CCccCHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHH-----HHHHHHHhHhcc--C-CCCCccccccCchhHHHHHHHHH
Q 028504 86 CGDFSMGEGLAITIASPLMAVAMG-IMLRSPPLVIG-----FIIWCIVGGAYS--I-DLPPLLRWKGNPLMAAVTIISMN 156 (208)
Q Consensus 86 sG~is~~~a~~~~~~l~~~~~~l~-~~~~~~~~~~~-----~~~~~~~~~~Ys--~-~~P~p~~lK~~~~~~~~~v~~~~ 156 (208)
++|+++|..+.....+++++=.++ +.-|.+.+.++ +..+.+....++ . ..| .-||-...+-+..+...
T Consensus 72 t~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvp---p~~~~~Aiaiv~~G~tl 148 (394)
T COG2814 72 TGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVP---PGKRGRALALVFTGLTL 148 (394)
T ss_pred HcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ccchhhHHHHHHHHHHH
Confidence 556667788888888888775553 33343333222 111111222221 1 025 46666666666555555
Q ss_pred hHH--HHHHHHHH
Q 028504 157 GLL--LLFPFFIH 167 (208)
Q Consensus 157 g~~--~~~g~~~~ 167 (208)
+.+ .++|.+..
T Consensus 149 A~v~GvPLGt~ig 161 (394)
T COG2814 149 ATVLGVPLGTFLG 161 (394)
T ss_pred HHHHhccHHHHHH
Confidence 443 34555543
No 115
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=28.96 E-value=2.4e+02 Score=20.91 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=23.0
Q ss_pred ccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHHH
Q 028504 74 IDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMG 109 (208)
Q Consensus 74 ~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~ 109 (208)
-||.|+ .|.+=+-+|..|....+....++++.++
T Consensus 8 p~RLN~--ePvV~rGlT~~El~~~a~~~~~~g~~~g 41 (121)
T PF11990_consen 8 PDRLNR--EPVVFRGLTADELGLAAGVGFVAGLVVG 41 (121)
T ss_pred hhhhcC--CCCeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 366664 5667777899998777777666665443
No 116
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=27.00 E-value=1.5e+02 Score=23.23 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 028504 95 LAITIASPLMAVAMGIMLRSPPLVIGFIIW 124 (208)
Q Consensus 95 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 124 (208)
..++..+...++..-+--+++-.+.+.+.+
T Consensus 106 ~~l~~~l~~~~fa~lfgg~~~~~~~a~i~g 135 (193)
T PF06738_consen 106 VILAAGLASAAFALLFGGSWIDMIVAFILG 135 (193)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444333223444444444444
No 117
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=26.03 E-value=2.7e+02 Score=20.44 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=25.0
Q ss_pred ccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHHH
Q 028504 74 IDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAMG 109 (208)
Q Consensus 74 ~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l~ 109 (208)
-||.|+ .|.+=+-+|..|....+.....+++.++
T Consensus 5 p~RLN~--ePvV~rGlT~~El~~~~~~~~~~gl~~g 38 (111)
T TIGR03750 5 PDRLNR--EPVVFRGLTADELGVAAGVGLAAGLVLG 38 (111)
T ss_pred chhhcC--CCceecccCHHHHHHHHHHHHHHHHHHH
Confidence 467764 5677778899998888887777776554
No 118
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=24.82 E-value=5.3e+02 Score=23.42 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=9.2
Q ss_pred HHHHHHHhhhhhhh
Q 028504 59 MNNYANAINQLADV 72 (208)
Q Consensus 59 ~~~a~~~iNd~~D~ 72 (208)
...++..-||++++
T Consensus 341 ~~~ss~~~~Di~~~ 354 (483)
T PRK09442 341 LQSSSTIIKDLYLN 354 (483)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445567898876
No 119
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=23.52 E-value=1.4e+02 Score=22.49 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=19.6
Q ss_pred CCCccccccCc---hhHHHHHHHHHhHHHHHHHHHHHH
Q 028504 135 LPPLLRWKGNP---LMAAVTIISMNGLLLLFPFFIHFQ 169 (208)
Q Consensus 135 ~P~p~~lK~~~---~~~~~~v~~~~g~~~~~g~~~~~~ 169 (208)
+| |++.||.. ++....+......++.+|+|...+
T Consensus 15 Y~-pv~y~R~~p~rg~sg~~~~~~~~~~~~~G~y~~~~ 51 (130)
T PF06212_consen 15 YP-PVQYKRNLPKRGPSGWTMFAGGAGIMAYGFYKVGQ 51 (130)
T ss_pred CC-CCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45 78888765 333344444444466778776643
No 120
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=21.03 E-value=4.4e+02 Score=23.72 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHH----HHHHHH-----HHHHHHHHHHHhhHHHHHHHHH
Q 028504 52 CMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEG----LAITIA-----SPLMAVAMGIMLRSPPLVIGFI 122 (208)
Q Consensus 52 ~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a----~~~~~~-----l~~~~~~l~~~~~~~~~~~~~~ 122 (208)
+++.+.+...+-.+.+-++.|+.+.. +..| .|.+|. +.-... ....|+..+.++..+...++.+
T Consensus 128 Gi~PGlLl~~~lm~~~~~~a~~~~~~-~~~~------~s~~e~~~~~~~a~~aLllpvIIigGi~~G~fTpTEaa~iav~ 200 (379)
T COG1593 128 GIVPGLLLTLALMVVAYIVARKRGYP-REER------ASFKERLKAAVKALWALLLPVIIIGGIRSGIFTPTEAAAIAVL 200 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-cccC------CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 45666777777788888888776543 1122 233332 111112 2222334456677788777766
Q ss_pred HHHHHh-HhccC
Q 028504 123 IWCIVG-GAYSI 133 (208)
Q Consensus 123 ~~~~~~-~~Ys~ 133 (208)
+.++.+ +.|--
T Consensus 201 yal~v~~~vYr~ 212 (379)
T COG1593 201 YALLVGAFVYRE 212 (379)
T ss_pred HHHHHHHHHHhh
Confidence 666566 78865
No 121
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=20.67 E-value=3.3e+02 Score=20.91 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=12.9
Q ss_pred CCcccCCccCHHHHH
Q 028504 81 YLPLACGDFSMGEGL 95 (208)
Q Consensus 81 ~RPl~sG~is~~~a~ 95 (208)
--|+++|+++.+|..
T Consensus 58 LvPiAtGki~~~~l~ 72 (140)
T PF04284_consen 58 LVPIATGKIGFKDLL 72 (140)
T ss_pred HccccCCCcCHHHHH
Confidence 379999999999964
Done!