Query 028504
Match_columns 208
No_of_seqs 170 out of 1728
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 20:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028504.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028504hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 12.7 63 0.0046 24.1 3.0 54 54-108 68-121 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 9.8 80 0.0058 23.6 2.7 54 54-108 71-124 (299)
3 d2drpa2 g.37.1.1 (A:140-165) T 9.4 46 0.0033 15.4 0.6 16 136-151 3-18 (26)
4 d1v74a_ d.243.1.1 (A:) Colicin 8.3 72 0.0052 20.5 1.5 14 81-94 2-15 (107)
5 d1co4a_ g.47.1.1 (A:) Zinc dom 5.5 87 0.0064 16.6 0.6 12 74-85 30-41 (42)
6 d1x4pa1 a.217.1.1 (A:8-60) Arg 5.2 74 0.0054 17.4 0.2 11 84-94 11-21 (53)
7 d2q80a1 a.128.1.1 (A:6-296) Ge 5.0 1.9E+02 0.014 21.1 2.7 51 54-107 46-96 (291)
8 d1aopa1 d.58.36.1 (A:81-145) S 4.6 1.2E+02 0.0088 17.1 0.9 15 84-98 6-20 (65)
9 d1iwga8 f.35.1.1 (A:513-566,A: 4.3 5.5E+02 0.04 17.5 8.3 116 17-133 84-205 (222)
10 d1nekc_ f.21.2.2 (C:) Succinat 4.3 1.3E+02 0.0098 19.3 1.1 10 75-84 2-11 (129)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=12.74 E-value=63 Score=24.13 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHH
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAM 108 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l 108 (208)
.+.=++|++.-+..|+.|.|.|+. ++.+|-...+.....|...+-.+...+.-+
T Consensus 68 ~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 68 IALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 456689999999999998887754 345666666677777777776666655543
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=9.80 E-value=80 Score=23.64 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHHHHH
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVAM 108 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~l 108 (208)
.+.=++|+++-+..|+.|.|-|.. ++.+|-.-.+.....|...+-.+...++-.
T Consensus 71 ~aiEllH~asLiHDDI~d~d~~~~-RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 71 AAVECIHAYSLIHDDLPAMDDDDL-RRGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHTSTTTTCCCE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchhhhhhhc-ccccccceeeeCcchhhhhcchHHHHHHHH
Confidence 466789999999999999887643 234454445556666766666666555533
No 3
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}
Probab=9.45 E-value=46 Score=15.42 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=12.1
Q ss_pred CCccccccCchhHHHH
Q 028504 136 PPLLRWKGNPLMAAVT 151 (208)
Q Consensus 136 P~p~~lK~~~~~~~~~ 151 (208)
|-|+++|.++--+|..
T Consensus 3 pcp~cfkeftrkdnm~ 18 (26)
T d2drpa2 3 PCPFCFKEFTRKDNMT 18 (26)
T ss_dssp ECTTTCCEESCHHHHH
T ss_pred CCchhhHHhccccCce
Confidence 4489999988777743
No 4
>d1v74a_ d.243.1.1 (A:) Colicin D nuclease domain {Escherichia coli [TaxId: 562]}
Probab=8.35 E-value=72 Score=20.49 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=10.1
Q ss_pred CCcccCCccCHHHH
Q 028504 81 YLPLACGDFSMGEG 94 (208)
Q Consensus 81 ~RPl~sG~is~~~a 94 (208)
+.|++||++|+++-
T Consensus 2 ~~pLds~~ftrkqL 15 (107)
T d1v74a_ 2 NDPLDSGRFSRKQL 15 (107)
T ss_dssp CCTTCBTTBCHHHH
T ss_pred CCCccCccchHHHH
Confidence 35788888888763
No 5
>d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic}
Probab=5.51 E-value=87 Score=16.58 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=7.0
Q ss_pred ccccCCCCCccc
Q 028504 74 IDKVNKPYLPLA 85 (208)
Q Consensus 74 ~D~~~~~~RPl~ 85 (208)
.=.++++-||..
T Consensus 30 L~~v~~kGRP~s 41 (42)
T d1co4a_ 30 LKILKPRGRPPT 41 (42)
T ss_dssp EEEECSCCCCSC
T ss_pred cEeecCCCCCCC
Confidence 334466778764
No 6
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.22 E-value=74 Score=17.44 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=8.3
Q ss_pred ccCCccCHHHH
Q 028504 84 LACGDFSMGEG 94 (208)
Q Consensus 84 l~sG~is~~~a 94 (208)
+.+|.+||||-
T Consensus 11 ii~G~LspkeR 21 (53)
T d1x4pa1 11 VIEGSLSPKER 21 (53)
T ss_dssp HHHTCSCHHHH
T ss_pred HHcCCCCHHHH
Confidence 56788888874
No 7
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.03 E-value=1.9e+02 Score=21.15 Aligned_cols=51 Identities=12% Similarity=0.103 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHHHHHHHHHHHHH
Q 028504 54 VPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLAITIASPLMAVA 107 (208)
Q Consensus 54 l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~~~~~l~~~~~~ 107 (208)
.+.=++|.+.-+..|+.|.+.=|. .+|-...+.....|...+-.+...++-
T Consensus 46 ~aiEllH~asLihDDi~D~~~~RR---g~pt~~~~~G~~~Ail~gd~l~~~a~~ 96 (291)
T d2q80a1 46 EVTEMLHNASLLIDDIEDNSKLRR---GFPVAHSIYGIPSVINSANYVYFLGLE 96 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEET---TEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCccccc---CCCccccccchhhhhhHHHHHHHHHHH
Confidence 355689999999999987664443 344455566777777777777766653
No 8
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=4.56 E-value=1.2e+02 Score=17.06 Aligned_cols=15 Identities=27% Similarity=0.209 Sum_probs=10.9
Q ss_pred ccCCccCHHHHHHHH
Q 028504 84 LACGDFSMGEGLAIT 98 (208)
Q Consensus 84 l~sG~is~~~a~~~~ 98 (208)
+|.|++|+.+...++
T Consensus 6 iPgG~it~~ql~~la 20 (65)
T d1aopa1 6 LPGGVITTKQWQAID 20 (65)
T ss_dssp CGGGEEEHHHHHHHH
T ss_pred cCCCCcCHHHHHHHH
Confidence 378888888876554
No 9
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.32 E-value=5.5e+02 Score=17.48 Aligned_cols=116 Identities=9% Similarity=-0.008 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCcccCCccCHHHHHH
Q 028504 17 PYSCVSIIAALLSVSLLPLQSPADFTPKLIIEAFKCMVPAIMMNNYANAINQLADVHIDKVNKPYLPLACGDFSMGEGLA 96 (208)
Q Consensus 17 p~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~l~~~l~~~l~~~a~~~iNd~~D~~~D~~~~~~RPl~sG~is~~~a~~ 96 (208)
|-....++...+.|...+..- .+.+.......-...+.+.....+..+.+++.+++.++-+++++-+..+.-.......
T Consensus 84 ~liv~~~ipl~~~~~~~~l~~-~g~~~~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~ 162 (222)
T d1iwga8 84 PFSVMLVVPLGVIGALLAATF-RGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPIL 162 (222)
T ss_dssp HHHGGGHHHHHHHHHHHHHHH-TTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCchhhhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHhHhccC
Q 028504 97 ITIASPLMAVAMGIML------RSPPLVIGFIIWCIVGGAYSI 133 (208)
Q Consensus 97 ~~~~l~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~Ys~ 133 (208)
......++++.--.+. -...+..+...+.....+.+.
T Consensus 163 ~t~ltti~gf~pl~~~~~~g~~~~~~la~~v~~Gll~s~~~~l 205 (222)
T d1iwga8 163 MTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 205 (222)
T ss_dssp HHHHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=4.31 E-value=1.3e+02 Score=19.29 Aligned_cols=10 Identities=20% Similarity=0.089 Sum_probs=0.0
Q ss_pred cccCCCCCcc
Q 028504 75 DKVNKPYLPL 84 (208)
Q Consensus 75 D~~~~~~RPl 84 (208)
.|.+|++||+
T Consensus 2 ~~~~~~~RP~ 11 (129)
T d1nekc_ 2 IRNVKKQRPV 11 (129)
T ss_dssp CTTCCCCCCB
T ss_pred chhcccCCCC
Done!