BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028505
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54RZ2|YIPF6_DICDI Protein YIPF6 homolog OS=Dictyostelium discoideum GN=yipf6 PE=3
SV=2
Length = 182
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 102 PNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLS 161
PNTL EPV T+ RDL I L V+ P R + LRDWDLWGP + + + LS
Sbjct: 7 PNTLDEPVIQTILRDLKMIGFKLYHVILP---RGNAANVLRDWDLWGPLILCLVMAIFLS 63
Query: 162 WSASVKKFLK 171
SA +K L+
Sbjct: 64 ISAEEQKALE 73
>sp|Q28CH8|YIPF6_XENTR Protein YIPF6 OS=Xenopus tropicalis GN=yipf6 PE=2 SV=1
Length = 233
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 93 IASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFF 152
+AST +TL EPV DT+ RDL + + V++P + LRDWDLWGP
Sbjct: 38 MASTSQEDDLSTLDEPVKDTIMRDLKAVGNKFLHVMYP----KKSTTLLRDWDLWGPLVL 93
Query: 153 IVFLGLTL 160
V L L L
Sbjct: 94 CVSLALML 101
>sp|Q6IQ85|YIPF6_DANRE Protein YIPF6 OS=Danio rerio GN=yipf6 PE=2 SV=1
Length = 240
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTL 160
+TL EPV DT+ RDL + V++P + LRDWDLWGP V L L L
Sbjct: 55 STLDEPVKDTILRDLRAVGQKFVHVMYP----KKSSALLRDWDLWGPLLLCVTLALML 108
>sp|Q9P6P8|YIP4_SCHPO Protein YIP4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC644.13c PE=1 SV=1
Length = 225
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 56 QSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDTVKR 115
N+ P S+ V S + P I+G S TG ++L EP+ T+
Sbjct: 16 MENLLRMDPVRSSLDVESRAIEP----DNIAGESIVETRFTG----GDSLDEPIRVTLFN 67
Query: 116 DLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYG 175
+ I L V++P + LRDWDLWGP F + + L L + S K ++S
Sbjct: 68 EFRAIGEKLVYVLYPKN-----AQVLRDWDLWGPLIFSLVIALAL--ALSTDKIERESVF 120
Query: 176 MKQSCMIWL 184
+IW
Sbjct: 121 TVVVALIWF 129
>sp|P53093|YIP4_YEAST Protein YIP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YIP4 PE=1 SV=2
Length = 235
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 86 SGGSRPNIASTGFGSPP-NTLTEPVWDTVKRDLSRIVSNLKLVVFPN------PYREDPG 138
SGG NI T S TL E V T+KRD+ I S LK VV+P+ P + G
Sbjct: 24 SGGVADNIGGTMQNSGSRGTLDETVLQTLKRDVVEINSRLKQVVYPHFPSFFSPSDDGIG 83
Query: 139 KALRD----WDLWGPFFFIVFLGLTLS 161
A D DLW P FI+ L +S
Sbjct: 84 AADNDISANCDLWAPLAFIILYSLFVS 110
>sp|A6QLC6|YIPF6_BOVIN Protein YIPF6 OS=Bos taurus GN=YIPF6 PE=2 SV=1
Length = 236
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTL 160
+TL E V +T+ RDL + V++P LRDWDLWGP V L L L
Sbjct: 52 STLNESVQNTIMRDLKAVGKKFMHVLYP----RKSNTLLRDWDLWGPLILCVTLALML 105
>sp|Q96EC8|YIPF6_HUMAN Protein YIPF6 OS=Homo sapiens GN=YIPF6 PE=2 SV=2
Length = 236
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTL 160
+TL E V +T+ RDL + V++P LRDWDLWGP V L L L
Sbjct: 52 STLNESVRNTIMRDLKAVGKKFMHVLYP----RKSNTLLRDWDLWGPLILCVTLALML 105
>sp|Q8BR70|YIPF6_MOUSE Protein YIPF6 OS=Mus musculus GN=Yipf6 PE=2 SV=1
Length = 236
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
+TL E + T+ RDL + V++P LRDWDLWGP V L L L
Sbjct: 52 STLNESIRRTIMRDLKAVGRKFMHVLYP----RKSNALLRDWDLWGPLILCVTLALMLQK 107
Query: 163 SA 164
S+
Sbjct: 108 SS 109
>sp|Q4QQU5|YIPF6_RAT Protein YIPF6 OS=Rattus norvegicus GN=Yipf6 PE=2 SV=1
Length = 236
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSW 162
+TL E + T+ RDL + V++P LRDWDLWGP V L L L
Sbjct: 52 STLNESIRRTIMRDLKAVGRKFMHVLYPRK----SNTLLRDWDLWGPLILCVSLALMLQK 107
Query: 163 SASVKK 168
S+ K
Sbjct: 108 SSVEGK 113
>sp|Q7V5M4|IF2_PROMM Translation initiation factor IF-2 OS=Prochlorococcus marinus
(strain MIT 9313) GN=infB PE=3 SV=1
Length = 1125
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 48/120 (40%), Gaps = 35/120 (29%)
Query: 13 ASSQSDIDEIENLINASPATVLPARP-------PSPP-------------------RPAT 46
A+S S+I ++ A+P PARP P+PP RP
Sbjct: 94 ATSSSEISHVKPSAPANPIPTSPARPSTESVAHPAPPTRPANPTPTPTSSPPKTAARPIN 153
Query: 47 IPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLT 106
P+S P I S P P S+N+ PS PVPP +GG P T S T++
Sbjct: 154 APISR-PAIPSRPTAPTPRSANK--PSSPVPPS------AGGKDPRAGQTSTTSKATTVS 204
Score = 31.2 bits (69), Expect = 5.8, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Query: 13 ASSQSDIDEIENLINASPATVLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVP 72
A S + + P + +RP SP P + P I S P P + P
Sbjct: 191 AGQTSTTSKATTVSGGGPRPKIVSRPQSPTAPGRSAPPAKPSIPSERKAPKPELVGRPKP 250
Query: 73 SVPVPPPLPSSTISGGSRPNIASTGFGSPP 102
PV P PS G RP+ G P
Sbjct: 251 KRPVVAP-PSRPDPEGQRPDKKRPGISPRP 279
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2
PE=1 SV=2
Length = 1032
Score = 30.4 bits (67), Expect = 8.1, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 49 VSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEP 108
+ +AP ++P P P S +K P + P LP+ +R +++ PP +P
Sbjct: 622 IRNAPSRPPSLPTPRPASQPRKAPVISSTPKLPAL----AAREEASTSRLLQPPEAPRKP 677
Query: 109 VWDTVKRDLSR---IVSNLKLVVFPN 131
+T+ + SR +V L + PN
Sbjct: 678 A-NTLVKTASRPAPLVQQLSPSLLPN 702
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,102,755
Number of Sequences: 539616
Number of extensions: 4277618
Number of successful extensions: 53610
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 1665
Number of HSP's that attempted gapping in prelim test: 29706
Number of HSP's gapped (non-prelim): 13775
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)