Query 028505
Match_columns 208
No_of_seqs 116 out of 195
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 12:33:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2946 Uncharacterized conser 100.0 1.3E-32 2.7E-37 239.3 9.1 140 33-189 1-140 (234)
2 COG5080 YIP1 Rab GTPase intera 99.5 2.2E-15 4.7E-20 131.4 2.0 80 101-189 53-132 (227)
3 KOG3103 Rab GTPase interacting 99.5 2.4E-14 5.3E-19 126.3 5.3 78 106-187 81-158 (249)
4 KOG3114 Uncharacterized conser 93.9 0.043 9.2E-07 50.4 2.7 50 113-164 84-133 (290)
5 PHA00007 E cell lysis protein 58.1 8.8 0.00019 30.2 2.3 19 142-160 2-20 (91)
6 PF12238 MSA-2c: Merozoite sur 49.3 1.1E+02 0.0024 27.1 8.0 30 16-45 125-154 (205)
7 KOG1923 Rac1 GTPase effector F 43.0 2.1E+02 0.0045 30.5 9.8 24 103-126 387-412 (830)
8 PF03878 YIF1: YIF1; InterPro 41.0 7.8 0.00017 34.6 -0.4 71 116-186 46-129 (240)
9 KOG4580 Component of vacuolar 39.0 15 0.00033 30.0 1.0 20 144-163 83-102 (112)
10 PHA01809 hypothetical protein 36.8 14 0.00031 27.3 0.5 14 16-29 37-50 (65)
11 COG5264 VTC1 Vacuolar transpor 33.9 17 0.00037 30.3 0.6 19 144-162 98-116 (126)
12 KOG0559 Dihydrolipoamide succi 31.1 2.3E+02 0.005 28.0 7.6 12 115-126 235-246 (457)
13 KOG2391 Vacuolar sorting prote 30.6 3.4E+02 0.0073 26.4 8.5 14 17-30 126-139 (365)
14 COG5178 PRP8 U5 snRNP spliceos 28.0 56 0.0012 36.7 3.3 10 122-131 72-81 (2365)
15 smart00831 Cation_ATPase_N Cat 25.3 60 0.0013 21.8 2.0 17 146-162 44-60 (64)
16 PF07172 GRP: Glycine rich pro 25.0 38 0.00082 26.3 1.1 16 149-164 6-21 (95)
17 PF11696 DUF3292: Protein of u 24.6 37 0.00079 34.8 1.2 45 114-161 291-335 (642)
18 PF02529 PetG: Cytochrome B6-F 23.9 17 0.00037 24.6 -0.8 34 149-194 4-37 (37)
19 PF02061 Lambda_CIII: Lambda P 23.2 54 0.0012 23.0 1.4 30 101-130 12-41 (45)
20 KOG1925 Rac1 GTPase effector F 22.0 2.4E+02 0.0051 29.3 6.1 42 7-49 200-241 (817)
21 PF15050 SCIMP: SCIMP protein 21.1 1.7E+02 0.0038 24.6 4.3 34 16-53 51-85 (133)
22 PHA01486 nonstructural protein 20.0 71 0.0015 20.9 1.4 15 112-126 6-20 (32)
No 1
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.98 E-value=1.3e-32 Score=239.28 Aligned_cols=140 Identities=43% Similarity=0.648 Sum_probs=111.3
Q ss_pred cCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChhHHHH
Q 028505 33 VLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDT 112 (208)
Q Consensus 33 v~~~~p~sppr~~sipv~s~p~~~~~~p~~pp~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~TLDEPV~eT 112 (208)
+.++|+++++| .+++++| +.+..+-.+. ... .++.++|-..+++++. +..++.+++||||||||||
T Consensus 1 ~~~~~~~s~~~-~s~~~~s----~t~~ep~~~s---~~~-~~~~~~p~~~a~n~g~-----g~~~~~~e~dTldePv~~t 66 (234)
T KOG2946|consen 1 VLDPRPHSPER-PSIEMES----QTMLEPVFAS---PSV-EAPASAPGNSAGNSGF-----GWLLEVNEEDTLDEPVLET 66 (234)
T ss_pred CCCCCCCCCCC-CCcCccC----cccCCccccC---ccc-cCCCCCCcccccccCc-----ccccccCCCCcccchHHHH
Confidence 46789999999 9999987 2233322211 111 1234444445544332 4566788999999999999
Q ss_pred HHHHHHHHHHhcceeeccCCCCCCCCCcccCcchhHHHHHHHHHHHHhhccccccccceeEecccceeeeehhhhhh
Q 028505 113 VKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRL 189 (208)
Q Consensus 113 LkRDL~~I~~KLk~VL~P~~~r~d~~k~LRDWDLWGPLiFcL~LAl~LS~sA~~~qs~~~FsGv~~F~~iW~~~~~~ 189 (208)
+|||+++|++|+|+||||+++++|+++.+|||||||||+||+++|++|++++..++. .+|+-+ |+..|++.++.
T Consensus 67 lkrD~~~I~~kl~~Vl~P~py~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~~~~~-~vFs~v--f~i~wfG~~vv 140 (234)
T KOG2946|consen 67 LKRDLRAIGSKLKHVLYPHPYFEDKGQLLRDWDLWGPLFFCVFLALILSLSGSVKSA-SVFAVV--FAILWFGAVVV 140 (234)
T ss_pred HHHHHHHHHhceEEEEccCCCcccccceeecccccchhHHHHHHHHHHHhhcCcccc-hhHHHH--HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987766 788887 99999998875
No 2
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=99.53 E-value=2.2e-15 Score=131.40 Aligned_cols=80 Identities=24% Similarity=0.284 Sum_probs=68.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhcceeeccCCCCCCCCCcccCcchhHHHHHHHHHHHHhhccccccccceeEeccccee
Q 028505 101 PPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSC 180 (208)
Q Consensus 101 ~~~TLDEPV~eTLkRDL~~I~~KLk~VL~P~~~r~d~~k~LRDWDLWGPLiFcL~LAl~LS~sA~~~qs~~~FsGv~~F~ 180 (208)
++...|||++||+..|+.+|.+|+++|+.|... ...++++||||||||+||+++++.|+++.+ ++|.-+ |+
T Consensus 53 g~~p~d~pLleel~i~F~~i~~ks~~vl~p~~~--~~~~i~~d~DL~gPliF~lL~sLfLsla~~-----shFgyi--y~ 123 (227)
T COG5080 53 GVYPGDPPLLEELGINFGHIKSKSDDVLGPFDN--KAFDILADCDLWGPLIFILLYSLFLSLAGK-----SHFGYI--YG 123 (227)
T ss_pred CCCCCCccHHHHhcccccccccccceeeecccc--cchhhhhcccccccHHHHHHHHHHHHhccc-----ceeehh--hH
Confidence 457789999999999999999999999999743 336899999999999999999999999987 445555 66
Q ss_pred eeehhhhhh
Q 028505 181 MIWLFPLRL 189 (208)
Q Consensus 181 ~iW~~~~~~ 189 (208)
..|++.+++
T Consensus 124 islfg~lsl 132 (227)
T COG5080 124 ISLFGTLSL 132 (227)
T ss_pred HHHHHHHHH
Confidence 689988765
No 3
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=2.4e-14 Score=126.33 Aligned_cols=78 Identities=22% Similarity=0.380 Sum_probs=67.4
Q ss_pred ChhHHHHHHHHHHHHHHhcceeeccCCCCCCCCCcccCcchhHHHHHHHHHHHHhhccccccccceeEecccceeeeehh
Q 028505 106 TEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLF 185 (208)
Q Consensus 106 DEPV~eTLkRDL~~I~~KLk~VL~P~~~r~d~~k~LRDWDLWGPLiFcL~LAl~LS~sA~~~qs~~~FsGv~~F~~iW~~ 185 (208)
++|++|||.+|+.+|++|++.||.|. |..+..+++|-||||||+|||++++.|..+++.+.++ +||++.|.++.++
T Consensus 81 EpPLLEELgInf~hI~~KT~~VLnP~--r~~~q~i~~d~DlaGPlvf~L~f~~flLl~gKi~Fgy--Iygi~~~gsl~iy 156 (249)
T KOG3103|consen 81 EPPLLEELGINFDHIKQKTRAVLNPF--RSADQSIMKDTDLAGPLVFCLLFGLFLLLAGKIHFGY--IYGISLLGSLSIY 156 (249)
T ss_pred CCchHHHhCCCHHHHHHHHhheeccc--ccCceEEecCcccccchHHHHHHHHHHHhcCceEEEE--EeeeHHHHHHHHH
Confidence 55699999999999999999999997 4455788999999999999999999999999887776 7887778777665
Q ss_pred hh
Q 028505 186 PL 187 (208)
Q Consensus 186 ~~ 187 (208)
.+
T Consensus 157 ~L 158 (249)
T KOG3103|consen 157 FL 158 (249)
T ss_pred HH
Confidence 43
No 4
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=0.043 Score=50.38 Aligned_cols=50 Identities=26% Similarity=0.446 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcceeeccCCCCCCCCCcccCcchhHHHHHHHHHHHHhhccc
Q 028505 113 VKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSA 164 (208)
Q Consensus 113 LkRDL~~I~~KLk~VL~P~~~r~d~~k~LRDWDLWGPLiFcL~LAl~LS~sA 164 (208)
+.-|..++.+|++.+++|++.-. .+.=.+-|||||+-+|.++-..|.++.
T Consensus 84 FdVDt~qV~~Rl~~SliP~~~~~--~~~~~~PDLYGPfWI~~TlVf~l~~~g 133 (290)
T KOG3114|consen 84 FDVDTAQVRKRLKESLIPRNYVR--DQIQDNPDLYGPFWITATLVFALAISG 133 (290)
T ss_pred cCCCHHHHHHHHHHhcCCccccc--cccCCCccccccHHHHHHHHHHHHHcc
Confidence 45688999999999999943211 122235999999999999988876543
No 5
>PHA00007 E cell lysis protein
Probab=58.12 E-value=8.8 Score=30.22 Aligned_cols=19 Identities=32% Similarity=0.707 Sum_probs=17.3
Q ss_pred cCcchhHHHHHHHHHHHHh
Q 028505 142 RDWDLWGPFFFIVFLGLTL 160 (208)
Q Consensus 142 RDWDLWGPLiFcL~LAl~L 160 (208)
..|-|||=|.|.+++++.|
T Consensus 2 e~WTL~~~LAFLLLLSLlL 20 (91)
T PHA00007 2 EHWTLSDTLAFLLLLSLLL 20 (91)
T ss_pred ceeeHHHHHHHHHHHHHHH
Confidence 4699999999999999987
No 6
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=49.29 E-value=1.1e+02 Score=27.15 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=23.4
Q ss_pred cCCHHHHHHHhhhCCCccCCCCCCCCCCCC
Q 028505 16 QSDIDEIENLINASPATVLPARPPSPPRPA 45 (208)
Q Consensus 16 qsd~deie~l~~~~p~~v~~~~p~sppr~~ 45 (208)
..+.++.|.|+..+|+.....+++++.+++
T Consensus 125 ~~~~~~f~elVkk~p~~~ss~~~sS~q~~~ 154 (205)
T PF12238_consen 125 YKAFNTFEELVKKKPAQPSSPTPSSPQGTS 154 (205)
T ss_pred HHHHHHHHHHhhhcccCCCCCCCCCCCCCC
Confidence 356788999999998888788877777633
No 7
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=43.01 E-value=2.1e+02 Score=30.46 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=13.9
Q ss_pred CCCChhHHHHHHH--HHHHHHHhcce
Q 028505 103 NTLTEPVWDTVKR--DLSRIVSNLKL 126 (208)
Q Consensus 103 ~TLDEPV~eTLkR--DL~~I~~KLk~ 126 (208)
+-+.|-+=++|.+ |+.+....++.
T Consensus 387 tvf~~~~De~Il~~lD~~~~ee~Fk~ 412 (830)
T KOG1923|consen 387 TVFHELNDEKILEALDFSRFEEQFKI 412 (830)
T ss_pred chhhhhhHHHHHHhhhHHHHHHHHHh
Confidence 3344444445544 77777777665
No 8
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=40.99 E-value=7.8 Score=34.57 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=45.8
Q ss_pred HHHHHHHhcceeeccCCCCC-----------CCCCcccCcchhHHHHHHHHHHHHhhc--cccccccceeEecccceeee
Q 028505 116 DLSRIVSNLKLVVFPNPYRE-----------DPGKALRDWDLWGPFFFIVFLGLTLSW--SASVKKFLKQSYGMKQSCMI 182 (208)
Q Consensus 116 DL~~I~~KLk~VL~P~~~r~-----------d~~k~LRDWDLWGPLiFcL~LAl~LS~--sA~~~qs~~~FsGv~~F~~i 182 (208)
|=.=|.+|++.+++|...+. .+.+.++--||-=|+.-++++-++-+. ....+.+.+.....++.+++
T Consensus 46 ~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~DvNAPDLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~Lg~~~s~al~ 125 (240)
T PF03878_consen 46 DNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDVNAPDLYIPLMAFVTYILLSGLILGLQGRFSPELLGIQASSALV 125 (240)
T ss_pred CHHHHHHHHHHeecccccCCccccccccCCCCchhhccCcccccchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 33458899999999975331 113445668999999888776554433 22335566666666666666
Q ss_pred ehhh
Q 028505 183 WLFP 186 (208)
Q Consensus 183 W~~~ 186 (208)
|.++
T Consensus 126 ~~~l 129 (240)
T PF03878_consen 126 WWFL 129 (240)
T ss_pred HHHH
Confidence 6553
No 9
>KOG4580 consensus Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=38.98 E-value=15 Score=30.04 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=16.6
Q ss_pred cchhHHHHHHHHHHHHhhcc
Q 028505 144 WDLWGPFFFIVFLGLTLSWS 163 (208)
Q Consensus 144 WDLWGPLiFcL~LAl~LS~s 163 (208)
=|-|||.++|.++.+.|..+
T Consensus 83 Dd~~GP~~v~~vl~valivN 102 (112)
T KOG4580|consen 83 DDRLGPTLVCVVLLVALIVN 102 (112)
T ss_pred CCcccchHHHHHHHHHHHHH
Confidence 48899999999998887643
No 10
>PHA01809 hypothetical protein
Probab=36.81 E-value=14 Score=27.25 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=12.1
Q ss_pred cCCHHHHHHHhhhC
Q 028505 16 QSDIDEIENLINAS 29 (208)
Q Consensus 16 qsd~deie~l~~~~ 29 (208)
.-||||||.|-|.|
T Consensus 37 dvdideiedlnhns 50 (65)
T PHA01809 37 DVDIDEIEDLNHNS 50 (65)
T ss_pred ecChHHhhhcccch
Confidence 46999999998877
No 11
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=33.92 E-value=17 Score=30.27 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=16.1
Q ss_pred cchhHHHHHHHHHHHHhhc
Q 028505 144 WDLWGPFFFIVFLGLTLSW 162 (208)
Q Consensus 144 WDLWGPLiFcL~LAl~LS~ 162 (208)
=|=|||.++|++|.+.+..
T Consensus 98 DD~~GP~lv~vvL~valiv 116 (126)
T COG5264 98 DDRLGPTLVCVVLLVALIV 116 (126)
T ss_pred ccccCCchhHHHHHHHHHH
Confidence 4889999999999887754
No 12
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=31.13 E-value=2.3e+02 Score=28.04 Aligned_cols=12 Identities=42% Similarity=0.277 Sum_probs=7.5
Q ss_pred HHHHHHHHhcce
Q 028505 115 RDLSRIVSNLKL 126 (208)
Q Consensus 115 RDL~~I~~KLk~ 126 (208)
|==++|.+|||.
T Consensus 235 RmR~RIA~RLKd 246 (457)
T KOG0559|consen 235 RMRLRIAERLKD 246 (457)
T ss_pred HHHHHHHHHHHh
Confidence 334677777765
No 13
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.60 E-value=3.4e+02 Score=26.37 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=8.1
Q ss_pred CCHHHHHHHhhhCC
Q 028505 17 SDIDEIENLINASP 30 (208)
Q Consensus 17 sd~deie~l~~~~p 30 (208)
.=+.||-..|++-|
T Consensus 126 ~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 126 GLIQELIAAFSEDP 139 (365)
T ss_pred HHHHHHHHHhcCCC
Confidence 33556666666655
No 14
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=28.02 E-value=56 Score=36.72 Aligned_cols=10 Identities=10% Similarity=-0.061 Sum_probs=5.6
Q ss_pred HhcceeeccC
Q 028505 122 SNLKLVVFPN 131 (208)
Q Consensus 122 ~KLk~VL~P~ 131 (208)
+|..+|+-+.
T Consensus 72 ak~~~v~t~k 81 (2365)
T COG5178 72 AKTLHVLTLK 81 (2365)
T ss_pred hhheeeeccC
Confidence 4556666553
No 15
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=25.27 E-value=60 Score=21.82 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHhhc
Q 028505 146 LWGPFFFIVFLGLTLSW 162 (208)
Q Consensus 146 LWGPLiFcL~LAl~LS~ 162 (208)
+|.|++++|.++.+++.
T Consensus 44 ~~~p~~~iL~~~a~is~ 60 (64)
T smart00831 44 FHNPLIYILLAAAVLSA 60 (64)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 58899999999888875
No 16
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.03 E-value=38 Score=26.31 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhccc
Q 028505 149 PFFFIVFLGLTLSWSA 164 (208)
Q Consensus 149 PLiFcL~LAl~LS~sA 164 (208)
-|+|+|+||++|.++.
T Consensus 6 ~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 6 FLLLGLLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3778888888887654
No 17
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=24.63 E-value=37 Score=34.75 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcceeeccCCCCCCCCCcccCcchhHHHHHHHHHHHHhh
Q 028505 114 KRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLS 161 (208)
Q Consensus 114 kRDL~~I~~KLk~VL~P~~~r~d~~k~LRDWDLWGPLiFcL~LAl~LS 161 (208)
.-|+.++|+|+-.+|-|.+.-.....-|| |-|=|+-.++.+++++
T Consensus 291 l~di~Dt~ERfaNaLSPTpPFp~~~~RlR---La~~l~p~~l~Sl~~s 335 (642)
T PF11696_consen 291 LGDITDTWERFANALSPTPPFPRHTPRLR---LAAILAPLLLASLFVS 335 (642)
T ss_pred HhhHHHHHHHHhhccCCCCCCCCccHHHH---HHHHHHHHHHHHHHhh
Confidence 45899999999999999764322222343 6776666666666665
No 18
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=23.91 E-value=17 Score=24.63 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhccccccccceeEecccceeeeehhhhhhccchh
Q 028505 149 PFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRLNQIDL 194 (208)
Q Consensus 149 PLiFcL~LAl~LS~sA~~~qs~~~FsGv~~F~~iW~~~~~~~~~~~ 194 (208)
||++-++++++- ..+.|+ |+..|.-+-|-||.++
T Consensus 4 plL~GiVlGli~----------vtl~Gl--fv~Ay~QY~Rg~ql~l 37 (37)
T PF02529_consen 4 PLLSGIVLGLIP----------VTLAGL--FVAAYLQYRRGNQLGL 37 (37)
T ss_dssp HHHHHHHHHHHH----------HHHHHH--HHHHHHHHCS--TTT-
T ss_pred hhhhhHHHHhHH----------HHHHHH--HHHHHHHHhcccccCC
Confidence 788888888763 224565 8889999999998875
No 19
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.23 E-value=54 Score=23.05 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=25.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhcceeecc
Q 028505 101 PPNTLTEPVWDTVKRDLSRIVSNLKLVVFP 130 (208)
Q Consensus 101 ~~~TLDEPV~eTLkRDL~~I~~KLk~VL~P 130 (208)
+-..|.|+++|-|-|.+++=|+|+-.+|..
T Consensus 12 G~~ql~ESLLdrItRklr~gwKRl~~iLnQ 41 (45)
T PF02061_consen 12 GCPQLSESLLDRITRKLRDGWKRLWDILNQ 41 (45)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 346789999999999999999998877654
No 20
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=21.95 E-value=2.4e+02 Score=29.31 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=25.4
Q ss_pred CCccCCCCCcCCHHHHHHHhhhCCCccCCCCCCCCCCCCCCCc
Q 028505 7 DTIPLHASSQSDIDEIENLINASPATVLPARPPSPPRPATIPV 49 (208)
Q Consensus 7 ~~ipl~~ssqsd~deie~l~~~~p~~v~~~~p~sppr~~sipv 49 (208)
.+-|+.-.-|+-|.|+..=-..+ .+|-+..|+.|+.|.-||.
T Consensus 200 ~~~P~~~~~~s~~~~~~~~~~R~-~~~~~~~P~~P~~P~~~P~ 241 (817)
T KOG1925|consen 200 ETAPAARTPQSPAPCVLLRAQRS-LAPEPKEPLIPASPKELPT 241 (817)
T ss_pred ccChHhhCcCCCchHHHHhhhhc-CCCCCCCCCCCCChhccCC
Confidence 35566666788888775433444 4455556666665566665
No 21
>PF15050 SCIMP: SCIMP protein
Probab=21.07 E-value=1.7e+02 Score=24.62 Aligned_cols=34 Identities=44% Similarity=0.803 Sum_probs=21.5
Q ss_pred cCCHHHH-HHHhhhCCCccCCCCCCCCCCCCCCCccCCC
Q 028505 16 QSDIDEI-ENLINASPATVLPARPPSPPRPATIPVSSAP 53 (208)
Q Consensus 16 qsd~dei-e~l~~~~p~~v~~~~p~sppr~~sipv~s~p 53 (208)
|-|++++ ||.++.+|. +-||.|||--..|--++|
T Consensus 51 ~rdeEkmYENv~n~~~~----~LPpLPPRg~~s~~~~sp 85 (133)
T PF15050_consen 51 QRDEEKMYENVLNQSPV----QLPPLPPRGSPSPEDSSP 85 (133)
T ss_pred cccHHHHHHHhhcCCcC----CCCCCCCCCCCCccccCc
Confidence 5577665 899998854 346778884444444444
No 22
>PHA01486 nonstructural protein
Probab=20.04 E-value=71 Score=20.87 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhcce
Q 028505 112 TVKRDLSRIVSNLKL 126 (208)
Q Consensus 112 TLkRDL~~I~~KLk~ 126 (208)
.++||++.|.-+++.
T Consensus 6 dirrdlrsiairlrk 20 (32)
T PHA01486 6 DIRRDLRSIAIRLRK 20 (32)
T ss_pred hHHHHHHHHHHHHHh
Confidence 479999999999887
Done!