Query 028505
Match_columns 208
No_of_seqs 116 out of 195
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 20:56:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oef_A Apolipoprotein E; glyco 12.3 1.4E+02 0.0047 17.1 2.1 20 107-126 4-23 (26)
2 2lor_A Transmembrane protein 1 15.6 49 0.0017 25.9 0.0 30 168-197 27-59 (108)
3 1a93_B MAX protein, coiled coi 8.3 76 0.0026 20.2 -0.0 9 16-24 13-21 (34)
4 2lpy_A Matrix protein P10; GAG 8.2 3.5E+02 0.012 21.2 3.7 31 100-130 45-75 (124)
5 2p1l_B Beclin 1; apoptosis, au 8.0 94 0.0032 19.1 0.3 7 14-20 23-29 (31)
6 2fcg_F Cationic, antibacterial 7.7 37 0.0013 20.6 -1.7 13 115-127 3-15 (26)
7 3io5_A Recombination and repai 7.1 1.2E+02 0.0041 27.2 0.6 11 141-151 289-299 (333)
8 1q90_G Cytochrome B6F complex 6.3 71 0.0024 20.8 -0.9 33 149-193 4-36 (37)
9 1xn7_A Hypothetical protein YH 6.3 2.8E+02 0.0097 19.3 2.1 20 110-129 30-49 (78)
10 1vf5_G Protein PET G; photosyn 6.1 34 0.0012 22.3 -2.5 33 149-193 4-36 (37)
No 1
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=12.32 E-value=1.4e+02 Score=17.06 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHhcce
Q 028505 107 EPVWDTVKRDLSRIVSNLKL 126 (208)
Q Consensus 107 EPV~eTLkRDL~~I~~KLk~ 126 (208)
+|.-+.+++-+..|+.+++.
T Consensus 4 ~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 4 EPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHh
Confidence 57889999999999998764
No 2
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=15.60 E-value=49 Score=25.89 Aligned_cols=30 Identities=10% Similarity=-0.033 Sum_probs=21.4
Q ss_pred ccceeEecccceeeeehhhhhhccc---hhhhh
Q 028505 168 KFLKQSYGMKQSCMIWLFPLRLNQI---DLRYS 197 (208)
Q Consensus 168 qs~~~FsGv~~F~~iW~~~~~~~~~---~~~~~ 197 (208)
|+..+|-|+++|++.....+.+.++ .|+|.
T Consensus 27 qS~Af~~Gl~tF~lG~~~~f~~Q~~vqrklpYp 59 (108)
T 2lor_A 27 QSHAFMKGVFTFVTGTGMAFGLQMFIQRKFPYP 59 (108)
Confidence 4457799999999988777766554 44454
No 3
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=8.30 E-value=76 Score=20.22 Aligned_cols=9 Identities=44% Similarity=0.863 Sum_probs=7.4
Q ss_pred cCCHHHHHH
Q 028505 16 QSDIDEIEN 24 (208)
Q Consensus 16 qsd~deie~ 24 (208)
|.||||++.
T Consensus 13 qqDIddlkr 21 (34)
T 1a93_B 13 QQDIDDLKR 21 (34)
T ss_dssp HHHHHHHHH
T ss_pred HhhHHHHHH
Confidence 789999874
No 4
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=8.21 E-value=3.5e+02 Score=21.24 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=26.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhcceeecc
Q 028505 100 SPPNTLTEPVWDTVKRDLSRIVSNLKLVVFP 130 (208)
Q Consensus 100 ~~~~TLDEPV~eTLkRDL~~I~~KLk~VL~P 130 (208)
+..+|||.-.|+-+++|++..++...-.-+|
T Consensus 45 p~eGtLd~~~W~kVG~~L~~~~~~~~~~~iP 75 (124)
T 2lpy_A 45 PQEGTIDIKRWRRVGDCFQDYYNTFGPEKVP 75 (124)
T ss_dssp TTTCCCCSHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 4568899999999999999999887766666
No 5
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=8.04 E-value=94 Score=19.09 Aligned_cols=7 Identities=57% Similarity=0.919 Sum_probs=1.4
Q ss_pred CCcCCHH
Q 028505 14 SSQSDID 20 (208)
Q Consensus 14 ssqsd~d 20 (208)
|+++|||
T Consensus 23 S~~sdID 29 (31)
T 2p1l_B 23 SGQTDVD 29 (31)
T ss_dssp TC-----
T ss_pred hCCCcCC
Confidence 6788988
No 6
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=7.68 E-value=37 Score=20.65 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=9.6
Q ss_pred HHHHHHHHhccee
Q 028505 115 RDLSRIVSNLKLV 127 (208)
Q Consensus 115 RDL~~I~~KLk~V 127 (208)
++++.|++|+|-.
T Consensus 3 ~~~kkIgQkIkdF 15 (26)
T 2fcg_F 3 KEFKRIVQRIKDF 15 (26)
T ss_dssp CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678888888763
No 7
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=7.09 E-value=1.2e+02 Score=27.23 Aligned_cols=11 Identities=36% Similarity=0.960 Sum_probs=9.1
Q ss_pred ccCcchhHHHH
Q 028505 141 LRDWDLWGPFF 151 (208)
Q Consensus 141 LRDWDLWGPLi 151 (208)
...||+|+||+
T Consensus 289 ~~~~~f~~~~~ 299 (333)
T 3io5_A 289 TNCTTFWGPLF 299 (333)
T ss_dssp GSSHHHHHHHH
T ss_pred CchHHHHHHHh
Confidence 44689999998
No 8
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=6.28 E-value=71 Score=20.77 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhccccccccceeEecccceeeeehhhhhhccch
Q 028505 149 PFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRLNQID 193 (208)
Q Consensus 149 PLiFcL~LAl~LS~sA~~~qs~~~FsGv~~F~~iW~~~~~~~~~~ 193 (208)
||+|-++++++- ..+.|+ |+..|.=+-|-||.+
T Consensus 4 ~lL~GIVlGlip----------vtlaGL--fv~Ay~QyrRg~~l~ 36 (37)
T 1q90_G 4 PLLCGIVLGLVP----------VTIAGL--FVTAYLQYLRGDLAT 36 (37)
T ss_dssp HHHHHHHHHHHH----------HHHHHH--HHHHHHHHC------
T ss_pred hhhhhHHHhhHH----------HHHHHH--HHHHHHHHhhccccC
Confidence 778888888763 224455 888888777777653
No 9
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=6.27 E-value=2.8e+02 Score=19.29 Aligned_cols=20 Identities=20% Similarity=0.051 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhcceeec
Q 028505 110 WDTVKRDLSRIVSNLKLVVF 129 (208)
Q Consensus 110 ~eTLkRDL~~I~~KLk~VL~ 129 (208)
-+||.|||...-+|=+..=.
T Consensus 30 ~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 30 QPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEe
Confidence 36999999998887654433
No 10
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=6.12 E-value=34 Score=22.28 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccccccccceeEecccceeeeehhhhhhccch
Q 028505 149 PFFFIVFLGLTLSWSASVKKFLKQSYGMKQSCMIWLFPLRLNQID 193 (208)
Q Consensus 149 PLiFcL~LAl~LS~sA~~~qs~~~FsGv~~F~~iW~~~~~~~~~~ 193 (208)
||+|-++++++- ..+.|+ |+..|.=+-|-||.+
T Consensus 4 plL~GIVlGlip----------vtl~GL--fv~Ay~QyrRg~ql~ 36 (37)
T 1vf5_G 4 PLLDGLVLGLVF----------ATLGGL--FYAAYQQYKRPNELG 36 (37)
T ss_dssp -----CHHHHHH----------HHHHHH--THHHHHHTCC-----
T ss_pred hhhhhHHHhhHH----------HHHHHH--HHHHHHHHhhccccC
Done!