Query 028505
Match_columns 208
No_of_seqs 116 out of 195
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 20:56:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028505.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028505hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsfa2 d.106.1.2 (A:161-240) 29.3 18 0.0013 25.3 2.8 21 105-125 1-21 (80)
2 d2p5ka1 a.4.5.3 (A:2-64) Argin 11.8 42 0.003 21.7 1.4 12 110-121 37-48 (63)
3 d1aoya_ a.4.5.3 (A:) Arginine 9.5 55 0.004 21.9 1.4 13 110-122 43-55 (78)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 9.1 89 0.0065 18.7 2.1 17 144-161 16-32 (37)
5 d2d81a1 c.69.1.37 (A:21-338) P 8.0 48 0.0035 26.6 0.6 15 117-131 247-262 (318)
6 d1b4aa1 a.4.5.3 (A:4-78) Argin 8.0 56 0.004 21.7 0.9 13 110-122 35-47 (75)
7 d1z9da1 c.73.1.3 (A:4-241) Uri 6.2 2.2E+02 0.016 19.6 3.5 29 103-131 22-50 (238)
8 d1j5ya1 a.4.5.1 (A:3-67) Putat 6.0 1.5E+02 0.011 18.0 2.1 14 110-123 36-49 (65)
9 d2g7sa2 a.121.1.1 (A:77-192) P 5.7 1E+02 0.0073 19.8 1.2 28 101-128 34-61 (116)
10 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 5.7 1.3E+02 0.0092 22.0 1.9 28 95-123 19-46 (146)
No 1
>d2nsfa2 d.106.1.2 (A:161-240) Micothiol-dependent maleylpyruvate isomerase {Corynebacterium glutamicum [TaxId: 1718]}
Probab=29.29 E-value=18 Score=25.30 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=18.1
Q ss_pred CChhHHHHHHHHHHHHHHhcc
Q 028505 105 LTEPVWDTVKRDLSRIVSNLK 125 (208)
Q Consensus 105 LDEPV~eTLkRDL~~I~~KLk 125 (208)
+.|+|+++|.+|+...|+|=.
T Consensus 1 iP~~vL~~LladIt~~W~~rg 21 (80)
T d2nsfa2 1 IPEVILRTLAAEITQKWTSQG 21 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHhhcC
Confidence 358899999999999999843
No 2
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=11.84 E-value=42 Score=21.67 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHH
Q 028505 110 WDTVKRDLSRIV 121 (208)
Q Consensus 110 ~eTLkRDL~~I~ 121 (208)
-.||.||++.++
T Consensus 37 QaTlSRDL~eLg 48 (63)
T d2p5ka1 37 QATVSRDIKELH 48 (63)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 469999999885
No 3
>d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=9.55 E-value=55 Score=21.93 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q 028505 110 WDTVKRDLSRIVS 122 (208)
Q Consensus 110 ~eTLkRDL~~I~~ 122 (208)
-.||.||++.++.
T Consensus 43 QaTiSRDL~eLg~ 55 (78)
T d1aoya_ 43 QSKVSRMLTKFGA 55 (78)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCC
Confidence 4799999998863
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.12 E-value=89 Score=18.71 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=9.3
Q ss_pred cchhHHHHHHHHHHHHhh
Q 028505 144 WDLWGPFFFIVFLGLTLS 161 (208)
Q Consensus 144 WDLWGPLiFcL~LAl~LS 161 (208)
-=.||=|+ +.++|++.|
T Consensus 16 sLy~GlLl-ifvl~vLFs 32 (37)
T d2axtl1 16 SLYLGLLL-ILVLALLFS 32 (37)
T ss_dssp HHHHHHHH-HHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHH
Confidence 33577554 445566543
No 5
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]}
Probab=8.03 E-value=48 Score=26.56 Aligned_cols=15 Identities=7% Similarity=0.485 Sum_probs=9.0
Q ss_pred HHHHHHhcc-eeeccC
Q 028505 117 LSRIVSNLK-LVVFPN 131 (208)
Q Consensus 117 L~~I~~KLk-~VL~P~ 131 (208)
+.+++++-. .||||.
T Consensus 247 ~~~~ad~~~~ivlyPq 262 (318)
T d2d81a1 247 YNKWADTNNMIILYPQ 262 (318)
T ss_dssp HHHHHTTTTEEEEECC
T ss_pred HHHHHHhCCeEEEeCC
Confidence 555555544 567884
No 6
>d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.02 E-value=56 Score=21.70 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q 028505 110 WDTVKRDLSRIVS 122 (208)
Q Consensus 110 ~eTLkRDL~~I~~ 122 (208)
-.||.||++.++.
T Consensus 35 QaTlSRDL~eLg~ 47 (75)
T d1b4aa1 35 QATVSRDIKEMQL 47 (75)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC
Confidence 4699999998763
No 7
>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]}
Probab=6.23 E-value=2.2e+02 Score=19.56 Aligned_cols=29 Identities=3% Similarity=0.112 Sum_probs=24.4
Q ss_pred CCCChhHHHHHHHHHHHHHHhcceeeccC
Q 028505 103 NTLTEPVWDTVKRDLSRIVSNLKLVVFPN 131 (208)
Q Consensus 103 ~TLDEPV~eTLkRDL~~I~~KLk~VL~P~ 131 (208)
.++|+.+++.+.+.+.+..++-+.|+.=.
T Consensus 22 ~~l~~~~l~~ia~~I~~l~~~g~~Vv~v~ 50 (238)
T d1z9da1 22 VGIDIPTVQAIAKEIAEVHVSGVQIALVI 50 (238)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45999999999999999988877776543
No 8
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.04 E-value=1.5e+02 Score=18.01 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHh
Q 028505 110 WDTVKRDLSRIVSN 123 (208)
Q Consensus 110 ~eTLkRDL~~I~~K 123 (208)
..|+.||+..+-+.
T Consensus 36 ~~TI~rdi~~L~~~ 49 (65)
T d1j5ya1 36 RQVIVQDIAYLRSL 49 (65)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
Confidence 46999999987554
No 9
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=5.70 E-value=1e+02 Score=19.79 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=0.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHHhcceee
Q 028505 101 PPNTLTEPVWDTVKRDLSRIVSNLKLVV 128 (208)
Q Consensus 101 ~~~TLDEPV~eTLkRDL~~I~~KLk~VL 128 (208)
+.+++||+|.+.+++-+...-..+..++
T Consensus 34 E~~~~~~~v~~~~~~~~~~~~~~l~~~l 61 (116)
T d2g7sa2 34 EIPVLPETVVLEVRAHFRSLSDWLTAVL 61 (116)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHH
No 10
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=5.65 E-value=1.3e+02 Score=21.96 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHh
Q 028505 95 STGFGSPPNTLTEPVWDTVKRDLSRIVSN 123 (208)
Q Consensus 95 ~~~~~~~~~TLDEPV~eTLkRDL~~I~~K 123 (208)
..|.+.++- |.+|+.+|+||=+..|-.|
T Consensus 19 ~cg~~~~e~-l~~p~~~tik~~v~~i~~k 46 (146)
T d1k3ka_ 19 ACGLNEPEY-LYHPLLSPIKLYITGLMRD 46 (146)
T ss_dssp TSTTCCCSS-CCCSSCSHHHHHHHHHHHH
T ss_pred hccCCchHh-hcCchhHHHHHHHHHHHHH
Done!