Query 028506
Match_columns 208
No_of_seqs 254 out of 1489
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1au7_A Protein PIT-1, GHF-1; c 100.0 9.7E-30 3.3E-34 201.5 2.5 134 8-154 12-145 (146)
2 2xsd_C POU domain, class 3, tr 99.9 1.9E-29 6.6E-34 203.4 1.3 139 8-157 22-160 (164)
3 3l1p_A POU domain, class 5, tr 99.9 1.9E-29 6.5E-34 201.6 -0.5 136 8-154 19-154 (155)
4 3d1n_I POU domain, class 6, tr 99.9 3.1E-28 1.1E-32 193.6 1.6 138 8-153 13-150 (151)
5 1e3o_C Octamer-binding transcr 99.9 5.3E-28 1.8E-32 194.1 2.3 141 9-154 17-159 (160)
6 2dmt_A Homeobox protein BARH-l 99.8 7.1E-20 2.4E-24 130.6 6.1 64 88-156 14-77 (80)
7 1puf_A HOX-1.7, homeobox prote 99.8 1.5E-19 5E-24 128.1 6.5 71 82-157 4-74 (77)
8 2da3_A Alpha-fetoprotein enhan 99.8 8.6E-20 2.9E-24 129.8 5.3 65 87-156 13-77 (80)
9 2dms_A Homeobox protein OTX2; 99.8 1.5E-19 5.3E-24 128.8 6.4 66 89-159 5-70 (80)
10 2kt0_A Nanog, homeobox protein 99.8 1.3E-19 4.5E-24 130.1 5.9 66 87-157 18-83 (84)
11 2dmq_A LIM/homeobox protein LH 99.8 2.8E-19 9.6E-24 127.2 6.7 65 90-159 6-70 (80)
12 1nk2_P Homeobox protein VND; h 99.8 2E-19 6.7E-24 127.4 5.6 68 86-158 4-71 (77)
13 2vi6_A Homeobox protein nanog; 99.8 1.1E-19 3.7E-24 123.5 3.8 61 90-155 2-62 (62)
14 2da1_A Alpha-fetoprotein enhan 99.8 2.1E-19 7.2E-24 124.8 5.2 63 89-156 5-67 (70)
15 2dmu_A Homeobox protein goosec 99.8 3.8E-19 1.3E-23 123.6 6.0 62 90-156 6-67 (70)
16 2cra_A Homeobox protein HOX-B1 99.8 1.9E-19 6.5E-24 125.2 4.2 63 89-156 5-67 (70)
17 2l7z_A Homeobox protein HOX-A1 99.8 4.8E-19 1.6E-23 124.2 6.2 65 89-158 5-69 (73)
18 2h1k_A IPF-1, pancreatic and d 99.8 2.6E-19 8.8E-24 122.1 4.7 61 90-155 2-62 (63)
19 2da2_A Alpha-fetoprotein enhan 99.8 2.3E-19 8E-24 124.6 4.5 63 89-156 5-67 (70)
20 1wh5_A ZF-HD homeobox family p 99.8 2.7E-19 9.2E-24 127.9 4.6 61 88-153 14-78 (80)
21 3a01_A Homeodomain-containing 99.8 4.5E-19 1.5E-23 130.1 5.9 68 87-159 13-80 (93)
22 1zq3_P PRD-4, homeotic bicoid 99.8 4.7E-19 1.6E-23 122.6 5.6 64 91-159 2-65 (68)
23 1ahd_P Antennapedia protein mu 99.8 3.9E-19 1.3E-23 123.0 5.2 63 91-158 2-64 (68)
24 1fjl_A Paired protein; DNA-bin 99.8 3.8E-19 1.3E-23 127.0 5.2 64 88-156 15-78 (81)
25 2cue_A Paired box protein PAX6 99.8 3.8E-19 1.3E-23 126.8 5.1 64 90-158 6-69 (80)
26 2hdd_A Protein (engrailed home 99.8 3E-19 1E-23 121.0 4.3 58 91-153 3-60 (61)
27 2da4_A Hypothetical protein DK 99.8 3.2E-19 1.1E-23 127.1 4.6 67 87-158 4-74 (80)
28 1ftt_A TTF-1 HD, thyroid trans 99.8 5.8E-19 2E-23 122.1 5.5 63 91-158 2-64 (68)
29 1yz8_P Pituitary homeobox 2; D 99.8 2.7E-19 9.3E-24 123.7 3.6 64 90-158 2-65 (68)
30 1b8i_A Ultrabithorax, protein 99.8 4.9E-19 1.7E-23 126.6 4.9 64 88-156 17-80 (81)
31 1ig7_A Homeotic protein MSX-1; 99.8 4.5E-19 1.6E-23 118.7 4.4 57 92-153 1-57 (58)
32 1wh7_A ZF-HD homeobox family p 99.8 4.8E-19 1.6E-23 126.7 4.7 61 87-153 13-78 (80)
33 1jgg_A Segmentation protein EV 99.8 5.7E-19 1.9E-23 119.2 4.7 58 92-154 2-59 (60)
34 1bw5_A ISL-1HD, insulin gene e 99.8 4E-19 1.4E-23 122.1 3.9 62 90-156 2-63 (66)
35 2m0c_A Homeobox protein arista 99.8 7.3E-19 2.5E-23 123.3 5.3 64 89-157 7-70 (75)
36 2e1o_A Homeobox protein PRH; D 99.7 8.8E-19 3E-23 121.8 5.3 62 90-156 6-67 (70)
37 2djn_A Homeobox protein DLX-5; 99.7 4E-19 1.4E-23 123.5 3.2 62 90-156 6-67 (70)
38 1uhs_A HOP, homeodomain only p 99.7 2.1E-18 7.1E-23 120.5 6.3 62 92-158 2-64 (72)
39 2k40_A Homeobox expressed in E 99.7 1E-18 3.5E-23 120.4 4.5 62 91-157 1-62 (67)
40 2hi3_A Homeodomain-only protei 99.7 2.7E-18 9.1E-23 120.3 6.4 63 91-158 2-65 (73)
41 2r5y_A Homeotic protein sex co 99.7 7.7E-19 2.6E-23 127.3 3.6 63 88-155 25-87 (88)
42 3a02_A Homeobox protein arista 99.7 1E-18 3.5E-23 117.9 3.7 58 94-156 2-59 (60)
43 2cuf_A FLJ21616 protein; homeo 99.7 2.9E-18 9.8E-23 126.1 6.3 66 89-159 5-85 (95)
44 3rkq_A Homeobox protein NKX-2. 99.7 1.9E-18 6.6E-23 115.2 4.4 57 91-152 2-58 (58)
45 1b72_A Protein (homeobox prote 99.7 2.1E-18 7.2E-23 127.2 4.7 64 89-157 32-95 (97)
46 1akh_A Protein (mating-type pr 99.7 1.5E-18 5E-23 117.4 3.4 59 89-152 3-61 (61)
47 2da5_A Zinc fingers and homeob 99.7 7.4E-18 2.5E-22 118.8 6.6 61 93-158 9-69 (75)
48 2dn0_A Zinc fingers and homeob 99.7 4.4E-18 1.5E-22 120.1 5.2 64 90-158 7-70 (76)
49 3a03_A T-cell leukemia homeobo 99.7 3.1E-18 1.1E-22 114.1 4.1 54 96-154 2-55 (56)
50 3nar_A ZHX1, zinc fingers and 99.7 2.9E-18 1E-22 126.3 4.1 64 87-155 21-84 (96)
51 2ly9_A Zinc fingers and homeob 99.7 5.9E-18 2E-22 118.7 5.3 63 90-157 5-67 (74)
52 2ecc_A Homeobox and leucine zi 99.7 8.9E-18 3.1E-22 118.8 5.5 62 93-159 5-66 (76)
53 1x2n_A Homeobox protein pknox1 99.7 1.3E-17 4.5E-22 116.6 6.0 64 89-157 5-71 (73)
54 1puf_B PRE-B-cell leukemia tra 99.7 1.2E-17 4.1E-22 116.9 5.3 63 91-158 1-66 (73)
55 2da6_A Hepatocyte nuclear fact 99.7 1.7E-17 5.8E-22 123.4 5.2 70 89-159 4-90 (102)
56 2ecb_A Zinc fingers and homeob 99.7 3E-17 1E-21 119.6 6.3 57 97-158 17-73 (89)
57 2dmn_A Homeobox protein TGIF2L 99.7 4.7E-17 1.6E-21 116.9 6.9 65 90-159 6-73 (83)
58 1du6_A PBX1, homeobox protein 99.7 9.1E-18 3.1E-22 114.5 2.7 59 90-153 2-63 (64)
59 1b72_B Protein (PBX1); homeodo 99.7 3.2E-17 1.1E-21 118.3 4.7 62 91-157 1-65 (87)
60 2dmp_A Zinc fingers and homeob 99.7 1.1E-16 3.7E-21 116.5 7.5 59 96-159 18-76 (89)
61 1k61_A Mating-type protein alp 99.7 3.4E-17 1.2E-21 110.3 4.3 56 94-154 1-59 (60)
62 1lfb_A Liver transcription fac 99.7 1.2E-17 4.1E-22 124.0 2.1 66 88-158 6-92 (99)
63 1wi3_A DNA-binding protein SAT 99.7 3.4E-17 1.2E-21 112.8 4.0 59 88-151 4-63 (71)
64 1mnm_C Protein (MAT alpha-2 tr 99.6 1.1E-16 3.6E-21 115.8 4.8 59 90-153 26-87 (87)
65 2cqx_A LAG1 longevity assuranc 99.6 3.2E-17 1.1E-21 114.8 1.5 60 91-155 8-68 (72)
66 2l9r_A Homeobox protein NKX-3. 99.6 6.4E-17 2.2E-21 112.5 3.0 57 96-157 9-65 (69)
67 1le8_B Mating-type protein alp 99.6 1.4E-16 4.8E-21 114.3 4.2 58 93-155 4-64 (83)
68 3nau_A Zinc fingers and homeob 99.6 1.4E-16 4.9E-21 109.4 3.8 52 99-155 12-63 (66)
69 2e19_A Transcription factor 8; 99.6 1.1E-16 3.8E-21 109.6 2.9 55 95-154 7-61 (64)
70 1x2m_A LAG1 longevity assuranc 99.6 2.9E-16 9.8E-21 107.6 2.1 50 100-154 9-59 (64)
71 2d5v_A Hepatocyte nuclear fact 99.6 5.8E-16 2E-20 124.1 3.4 64 88-156 94-157 (164)
72 1ic8_A Hepatocyte nuclear fact 99.6 2.2E-16 7.7E-21 130.1 0.6 62 87-153 111-193 (194)
73 3k2a_A Homeobox protein MEIS2; 99.5 4.5E-15 1.5E-19 102.4 3.3 57 97-158 4-63 (67)
74 2h8r_A Hepatocyte nuclear fact 99.4 5.4E-14 1.8E-18 117.5 3.4 64 87-151 138-218 (221)
75 2da7_A Zinc finger homeobox pr 99.4 1.1E-13 3.6E-18 95.8 3.2 46 100-150 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.3 1.3E-12 4.6E-17 94.7 3.4 57 96-157 10-69 (89)
77 1mh3_A Maltose binding-A1 home 99.2 4.1E-12 1.4E-16 112.7 2.3 56 92-152 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 3.6E-09 1.2E-13 64.4 0.6 21 138-158 1-21 (37)
79 2ys9_A Homeobox and leucine zi 92.9 0.048 1.6E-06 37.2 2.0 38 103-145 18-55 (70)
80 2glo_A Brinker CG9653-PA; prot 63.2 5.6 0.00019 25.0 2.8 46 95-146 3-48 (59)
81 2elh_A CG11849-PA, LD40883P; s 57.4 9.9 0.00034 25.8 3.5 45 91-145 16-60 (87)
82 1hlv_A CENP-B, major centromer 57.3 11 0.00038 27.1 3.9 49 94-150 4-52 (131)
83 3hug_A RNA polymerase sigma fa 55.3 7.1 0.00024 26.6 2.4 47 98-154 38-84 (92)
84 1tc3_C Protein (TC3 transposas 52.1 14 0.00047 21.0 3.1 40 97-146 5-44 (51)
85 2o8x_A Probable RNA polymerase 48.1 9.3 0.00032 24.1 2.0 46 97-152 15-60 (70)
86 2qko_A Possible transcriptiona 47.7 7.6 0.00026 29.6 1.7 41 103-149 34-74 (215)
87 2rgt_A Fusion of LIM/homeobox 47.3 0.21 7.3E-06 38.9 -7.5 30 89-119 134-163 (169)
88 1jko_C HIN recombinase, DNA-in 40.2 13 0.00046 21.5 1.7 41 98-148 6-46 (52)
89 2jn6_A Protein CGL2762, transp 39.9 21 0.00072 24.3 2.9 42 95-145 3-45 (97)
90 1s7o_A Hypothetical UPF0122 pr 39.3 17 0.0006 26.1 2.4 47 98-154 23-69 (113)
91 3c57_A Two component transcrip 36.5 23 0.00077 24.3 2.6 46 96-152 26-71 (95)
92 3mzy_A RNA polymerase sigma-H 36.3 18 0.00062 26.1 2.2 47 97-154 109-155 (164)
93 3fiw_A Putative TETR-family tr 35.7 24 0.00081 27.4 2.9 52 92-149 19-71 (211)
94 1p4w_A RCSB; solution structur 31.4 47 0.0016 23.2 3.6 42 95-147 32-73 (99)
95 2hxo_A Putative TETR-family tr 30.7 56 0.0019 25.8 4.4 51 92-148 10-61 (237)
96 1xsv_A Hypothetical UPF0122 pr 29.8 23 0.00079 25.3 1.7 47 98-154 26-72 (113)
97 2iai_A Putative transcriptiona 29.5 29 0.00099 26.7 2.5 41 102-148 35-75 (230)
98 1fse_A GERE; helix-turn-helix 29.5 37 0.0013 21.3 2.6 44 95-149 9-52 (74)
99 1je8_A Nitrate/nitrite respons 29.4 28 0.00095 23.1 2.0 44 96-150 20-63 (82)
100 2p7v_B Sigma-70, RNA polymeras 29.2 22 0.00077 22.5 1.5 48 97-150 5-52 (68)
101 1ku3_A Sigma factor SIGA; heli 29.1 31 0.0011 22.1 2.2 50 97-152 10-59 (73)
102 2q24_A Putative TETR family tr 27.8 22 0.00076 26.4 1.4 41 101-148 19-59 (194)
103 2x7l_M HIV REV; nuclear export 27.2 25 0.00086 25.8 1.5 36 104-158 16-51 (115)
104 1or7_A Sigma-24, RNA polymeras 26.1 32 0.0011 25.7 2.1 47 98-154 141-187 (194)
105 2rnj_A Response regulator prot 24.6 35 0.0012 23.0 1.8 44 96-150 28-71 (91)
106 1tty_A Sigma-A, RNA polymerase 24.3 34 0.0012 22.9 1.7 48 97-150 18-65 (87)
107 2g7l_A TETR-family transcripti 24.1 45 0.0016 26.5 2.7 51 93-149 14-65 (243)
108 2i10_A Putative TETR transcrip 23.4 43 0.0015 25.1 2.4 45 100-150 14-58 (202)
109 3dcf_A Transcriptional regulat 23.1 31 0.0011 25.7 1.5 40 103-148 37-76 (218)
110 3on2_A Probable transcriptiona 23.0 45 0.0016 24.2 2.4 41 102-148 17-57 (199)
111 3q0w_A HTH-type transcriptiona 22.6 33 0.0011 26.4 1.6 40 103-148 50-89 (236)
112 1rp3_A RNA polymerase sigma fa 22.4 40 0.0014 26.0 2.0 48 97-154 187-234 (239)
113 2hxi_A Putative transcriptiona 22.3 37 0.0013 27.0 1.8 49 94-148 25-74 (241)
114 3iz6_M 40S ribosomal protein S 22.2 74 0.0025 24.4 3.4 30 116-148 58-87 (152)
115 3ulq_B Transcriptional regulat 22.0 61 0.0021 22.0 2.7 44 92-146 24-67 (90)
116 1u78_A TC3 transposase, transp 21.6 75 0.0026 22.4 3.3 41 96-146 5-45 (141)
117 1x3u_A Transcriptional regulat 20.9 30 0.001 22.2 0.8 42 98-150 17-58 (79)
118 2iu5_A DHAS, YCEG, HTH-type dh 20.8 72 0.0025 23.5 3.2 42 102-149 18-59 (195)
119 3ccy_A Putative TETR-family tr 20.7 61 0.0021 24.0 2.7 40 102-147 19-58 (203)
120 3kz9_A SMCR; transcriptional r 20.4 57 0.0019 23.8 2.5 40 103-148 23-62 (206)
121 2fq4_A Transcriptional regulat 20.2 48 0.0016 24.5 2.0 42 103-150 18-59 (192)
No 1
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.95 E-value=9.7e-30 Score=201.50 Aligned_cols=134 Identities=20% Similarity=0.268 Sum_probs=113.1
Q ss_pred CCcCchhhhhhhcccCCcccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccccccCCCCCCCCCCCccCCC
Q 028506 8 FQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASGS 87 (208)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~y~~ic~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 87 (208)
|++.++..++.|+|||.++|.+||.++++++||+|+++..++.++|+..+.+.+|+.+.+...+... ...+.
T Consensus 12 ~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~~~~--------~~~~~ 83 (146)
T 1au7_A 12 FKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGALYN--------EKVGA 83 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC-------------------
T ss_pred HHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhcccCccC--------cccCC
Confidence 4667788999999999999999999999999999999999999999999999999999875422111 11233
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 88 ~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
.+++||.|+.|+..|+..||..|..++ ||+..+|..||..| ||++.+|+|||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHS-KPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 456788999999999999999999997 99999999999999 999999999999999999985
No 2
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.95 E-value=1.9e-29 Score=203.39 Aligned_cols=139 Identities=19% Similarity=0.250 Sum_probs=110.0
Q ss_pred CCcCchhhhhhhcccCCcccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccccccCCCCCCCCCCCccCCC
Q 028506 8 FQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASGS 87 (208)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~y~~ic~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 87 (208)
|++.++..++.|+|||.++|.+||.++++++||+|++...++.++|+..+.+.+|+...+...+.... . .....
T Consensus 22 fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~~---~---~~~~~ 95 (164)
T 2xsd_C 22 FKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTN---L---DKIAA 95 (164)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccCCCcc---c---ccccc
Confidence 56778899999999999999999999999999999999999999999999999999988754322111 0 11123
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcC
Q 028506 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (208)
Q Consensus 88 ~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~ 157 (208)
..++||.|+.|+..|+.+||..|..++ ||+..+|..||..| ||++.+|+|||||||+|+||....
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCP-KPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhccCC
Confidence 456788999999999999999999997 99999999999999 999999999999999999997653
No 3
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.95 E-value=1.9e-29 Score=201.62 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=116.0
Q ss_pred CCcCchhhhhhhcccCCcccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccccccCCCCCCCCCCCccCCC
Q 028506 8 FQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASGS 87 (208)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~y~~ic~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 87 (208)
|++.++..++.|+|||.++|.+||.+|++++||+|++...+++++|+..+.+.+|+.+.+...... +...... .
T Consensus 19 fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~~-~~~~~~~-----~ 92 (155)
T 3l1p_A 19 LKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENLQ-EISKSET-----L 92 (155)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHHHH-HSSCC--------
T ss_pred HHhhhheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhhhcccCcc-ccccccc-----c
Confidence 567788999999999999999999999999999999999999999999999999998876421111 0001111 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 88 ~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
..+++|.|+.|+..|+..||..|..++ ||+..+|..||..| ||++.+|+|||||||+|+||.
T Consensus 93 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 93 VQARKRKRTSIENRVRWSLETMFLKSP-KPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCCSCCCCCCCCHHHHHHHHTTTTTCS-CCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC-
T ss_pred ccCCCCCCcccCHHHHHHHHHHHccCC-CCCHHHHHHHHHHc----CCChhheeeccccccccccCC
Confidence 136778899999999999999999997 99999999999999 999999999999999999974
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.94 E-value=3.1e-28 Score=193.64 Aligned_cols=138 Identities=18% Similarity=0.167 Sum_probs=117.6
Q ss_pred CCcCchhhhhhhcccCCcccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccccccCCCCCCCCCCCccCCC
Q 028506 8 FQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASGS 87 (208)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~y~~ic~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 87 (208)
|++.++..++.|+|||.++|.+||.++++++||+|++...++.++|+..+.+.+|+.+.+......... ......+.
T Consensus 13 f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~~---~~~~~~~~ 89 (151)
T 3d1n_I 13 FKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQN---LMEFVGGE 89 (151)
T ss_dssp HHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCSTT---HHHHHCSS
T ss_pred HHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCccc---ccccCCCC
Confidence 567788999999999999999999999999999999999999999999999999998776432111110 00111223
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHh
Q 028506 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (208)
Q Consensus 88 ~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr 153 (208)
..++||.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNP-LPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 346788999999999999999999997 99999999999999 99999999999999999987
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.94 E-value=5.3e-28 Score=194.08 Aligned_cols=141 Identities=15% Similarity=0.122 Sum_probs=109.6
Q ss_pred CcCchhhhhhhcccCCcccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccccccCCC--CCCCCCCCccCC
Q 028506 9 QQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRM--GNPYFDPFVASG 86 (208)
Q Consensus 9 ~~~~~~~~~~q~~~~~~~~~~~~~~~t~~q~~~lr~qi~~y~~ic~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~ 86 (208)
.+.+...+..|+++|.++|.+||.++++.+|++|+.+..++.++|+..+.|.+|+.+.....+... +.+.........
T Consensus 17 k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~~~~~~s~~~~~~~~~~ 96 (160)
T 1e3o_C 17 KQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLSSPSALNSPGIE 96 (160)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhHHHHHHhhhcccccCCCCCCCCCcCCCCCC
Confidence 445677889999999999999999999999999999999999999999999999998764322111 111111111112
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 87 ~~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
+..++||.|+.|+..|+.+||..|..++ ||+..+|..||..| ||++.+|+|||||||+|+||.
T Consensus 97 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 97 GLSRRRKKRTSIETNIRVALEKSFMENQ-KPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCcCccccCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 3346788999999999999999999997 99999999999999 999999999999999999985
No 6
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.1e-20 Score=130.58 Aligned_cols=64 Identities=30% Similarity=0.378 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 88 ~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
.++.+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+||...
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQK-YLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcccC
Confidence 446788999999999999999999997 99999999999999 99999999999999999998654
No 7
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.79 E-value=1.5e-19 Score=128.07 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=63.6
Q ss_pred CccCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcC
Q 028506 82 FVASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (208)
Q Consensus 82 ~~~~~~~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~ 157 (208)
.....+.+..++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+..+.
T Consensus 4 ~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 4 AANWLHARSTRKKRCPYTKHQTLELEKEFLFNM-YLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TTTSCCCCTTSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhhh
Confidence 333445567888999999999999999999997 99999999999999 999999999999999999997653
No 8
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=8.6e-20 Score=129.75 Aligned_cols=65 Identities=31% Similarity=0.454 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 87 ~~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
...+.+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDS-NPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhcc
Confidence 3456888999999999999999999997 99999999999999 99999999999999999998653
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.5e-19 Score=128.76 Aligned_cols=66 Identities=29% Similarity=0.472 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCCC
Q 028506 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (208)
Q Consensus 89 ~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~~ 159 (208)
++.+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+......
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTR-YPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 36788999999999999999999997 99999999999999 99999999999999999999876653
No 10
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=130.08 Aligned_cols=66 Identities=27% Similarity=0.372 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcC
Q 028506 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (208)
Q Consensus 87 ~~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~ 157 (208)
...+.+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+..+.
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQK-YLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHhhc
Confidence 3456888999999999999999999997 99999999999999 999999999999999999987653
No 11
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-19 Score=127.25 Aligned_cols=65 Identities=18% Similarity=0.335 Sum_probs=61.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCCC
Q 028506 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~~ 159 (208)
+.+|.|+.|+..|+.+||.+|..++ ||+..++..||..| ||++.+|+|||||||+|+|+......
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINH-NPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 5788999999999999999999997 99999999999999 99999999999999999999876653
No 12
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.77 E-value=2e-19 Score=127.41 Aligned_cols=68 Identities=25% Similarity=0.326 Sum_probs=62.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 86 ~~~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
+.+++.++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQR-YLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhccc
Confidence 34456788999999999999999999997 99999999999999 9999999999999999999876643
No 13
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.77 E-value=1.1e-19 Score=123.50 Aligned_cols=61 Identities=31% Similarity=0.416 Sum_probs=53.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhh
Q 028506 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~ 155 (208)
+.++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQK-YLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 4678899999999999999999997 99999999999999 9999999999999999999864
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=124.82 Aligned_cols=63 Identities=21% Similarity=0.411 Sum_probs=59.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 89 ~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
.+.++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+..+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINN-SPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhcc
Confidence 36788999999999999999999997 99999999999999 99999999999999999998754
No 15
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-19 Score=123.58 Aligned_cols=62 Identities=31% Similarity=0.505 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
..+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETK-YPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH----CCCHHHeehccccccccccccCC
Confidence 5778999999999999999999997 99999999999999 99999999999999999998654
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.9e-19 Score=125.19 Aligned_cols=63 Identities=30% Similarity=0.423 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 89 ~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
.+.++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANK-FITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccCC
Confidence 35788999999999999999999997 99999999999999 99999999999999999998653
No 17
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.77 E-value=4.8e-19 Score=124.23 Aligned_cols=65 Identities=32% Similarity=0.385 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 89 ~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
.+.++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNK-FITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTS-CCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCC-CcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHhccc
Confidence 36788999999999999999999997 99999999999999 9999999999999999999876543
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.77 E-value=2.6e-19 Score=122.07 Aligned_cols=61 Identities=30% Similarity=0.397 Sum_probs=55.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhh
Q 028506 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~ 155 (208)
..+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNK-YISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 3678899999999999999999997 99999999999999 9999999999999999999863
No 19
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-19 Score=124.58 Aligned_cols=63 Identities=21% Similarity=0.410 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 89 ~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
.+.++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANA-YPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhccc
Confidence 36788999999999999999999997 99999999999999 99999999999999999998654
No 20
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=2.7e-19 Score=127.90 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHh
Q 028506 88 QKLTARQRWTPTPAQLQILEHVYDE----CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (208)
Q Consensus 88 ~~~~rr~Rt~~s~~ql~~Le~~F~~----~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr 153 (208)
..+++|.||.|+..|+..||..|+. ++ ||+..+|++||..| ||++.+|+|||||||+|.|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~-yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQ-RQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCC-TTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCC-CcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 3467889999999999999999999 96 99999999999999 99999999999999999875
No 21
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.76 E-value=4.5e-19 Score=130.06 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCCC
Q 028506 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (208)
Q Consensus 87 ~~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~~ 159 (208)
.+++.++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+......
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQK-YLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHHHH
Confidence 3446788999999999999999999997 99999999999999 99999999999999999999877654
No 22
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=4.7e-19 Score=122.60 Aligned_cols=64 Identities=28% Similarity=0.402 Sum_probs=60.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCCC
Q 028506 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (208)
Q Consensus 91 ~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~~ 159 (208)
++|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGR-YLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 578899999999999999999997 99999999999999 99999999999999999999876653
No 23
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.76 E-value=3.9e-19 Score=123.04 Aligned_cols=63 Identities=25% Similarity=0.357 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 91 ~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
++|.|+.|+..|+..||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNR-YLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCC-CCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhcccc
Confidence 578899999999999999999997 99999999999999 9999999999999999999987654
No 24
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.76 E-value=3.8e-19 Score=127.00 Aligned_cols=64 Identities=28% Similarity=0.543 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 88 ~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
.++.+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQ-YPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhcc
Confidence 446788999999999999999999997 99999999999999 99999999999999999998754
No 25
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=3.8e-19 Score=126.81 Aligned_cols=64 Identities=25% Similarity=0.441 Sum_probs=60.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
..+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+..+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTH-YPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 5788999999999999999999997 99999999999999 9999999999999999999987654
No 26
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.76 E-value=3e-19 Score=120.95 Aligned_cols=58 Identities=28% Similarity=0.532 Sum_probs=52.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHh
Q 028506 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (208)
Q Consensus 91 ~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr 153 (208)
.+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENR-YLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 578899999999999999999997 99999999999999 99999999999999999987
No 27
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-19 Score=127.13 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhc----CCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 87 SQKLTARQRWTPTPAQLQILEHVYDEC----KGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 87 ~~~~~rr~Rt~~s~~ql~~Le~~F~~~----~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
...+.+|.|+.|+..|+.+||.+|..+ + ||+..++.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~-yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~~~~ 74 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLG-SVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMGIEV 74 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCS-HHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCC-CcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhccCCC
Confidence 344688899999999999999999999 8 99999999999999 9999999999999999999865443
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=5.8e-19 Score=122.12 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=59.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 91 ~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
+++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQK-YLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 568899999999999999999997 99999999999999 9999999999999999999987654
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.75 E-value=2.7e-19 Score=123.73 Aligned_cols=64 Identities=28% Similarity=0.455 Sum_probs=60.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
+.++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNR-YPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCS-SCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 4678999999999999999999997 99999999999999 9999999999999999999987755
No 30
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.75 E-value=4.9e-19 Score=126.61 Aligned_cols=64 Identities=30% Similarity=0.414 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 88 ~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
....+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+||..+
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNH-YLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhcc
Confidence 346788999999999999999999997 99999999999999 99999999999999999998754
No 31
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=4.5e-19 Score=118.70 Aligned_cols=57 Identities=35% Similarity=0.481 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHh
Q 028506 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (208)
Q Consensus 92 rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr 153 (208)
++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQ-YLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 57899999999999999999997 99999999999999 99999999999999999987
No 32
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.75 E-value=4.8e-19 Score=126.68 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHh
Q 028506 87 SQKLTARQRWTPTPAQLQILEHVYDE-----CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (208)
Q Consensus 87 ~~~~~rr~Rt~~s~~ql~~Le~~F~~-----~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr 153 (208)
...+++|.||.|+..|+..|| .|.. ++ ||+..+|++||..| ||++.+|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~-yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQ-KHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCC-SSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCC-CCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 344678899999999999999 7999 96 99999999999999 99999999999999999875
No 33
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=5.7e-19 Score=119.16 Aligned_cols=58 Identities=31% Similarity=0.438 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 92 rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
+|.|+.|+..|+..||..|..++ ||+..++..||..| ||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKEN-YVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 57899999999999999999997 99999999999999 999999999999999999985
No 34
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=4e-19 Score=122.12 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
+.+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|++||||||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANP-RPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHhh
Confidence 4678999999999999999999997 99999999999999 99999999999999999988653
No 35
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=7.3e-19 Score=123.35 Aligned_cols=64 Identities=30% Similarity=0.447 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcC
Q 028506 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (208)
Q Consensus 89 ~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~ 157 (208)
+++++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+..+.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTH-YPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHhh
Confidence 46788899999999999999999997 99999999999999 999999999999999999987654
No 36
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=8.8e-19 Score=121.81 Aligned_cols=62 Identities=27% Similarity=0.341 Sum_probs=58.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
..++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+...
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQK-YLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCCC
Confidence 5677899999999999999999997 99999999999999 99999999999999999998754
No 37
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4e-19 Score=123.55 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=58.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
+.++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+||...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQ-YLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccCC
Confidence 5788999999999999999999997 99999999999999 99999999999999999988643
No 38
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=2.1e-18 Score=120.54 Aligned_cols=62 Identities=26% Similarity=0.379 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 92 ARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 92 rr~Rt~~s~~ql~~Le~~F~~-~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
.+.|+.|+..|+.+||..|.. ++ ||+..++..||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhccCC
Confidence 467899999999999999996 96 99999999999999 9999999999999999999987554
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.74 E-value=1e-18 Score=120.42 Aligned_cols=62 Identities=32% Similarity=0.521 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcC
Q 028506 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (208)
Q Consensus 91 ~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~ 157 (208)
.+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|++||||||+|+|+....
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNC-YPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhchh
Confidence 367899999999999999999997 99999999999999 999999999999999999987654
No 40
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=2.7e-18 Score=120.35 Aligned_cols=63 Identities=27% Similarity=0.426 Sum_probs=58.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh-cCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 91 TARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 91 ~rr~Rt~~s~~ql~~Le~~F~~-~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
.++.|+.|+..|+.+||..|.. ++ ||+..++..||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhccCC
Confidence 3567899999999999999995 96 99999999999999 9999999999999999999987544
No 41
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.74 E-value=7.7e-19 Score=127.33 Aligned_cols=63 Identities=27% Similarity=0.382 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhh
Q 028506 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (208)
Q Consensus 88 ~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~ 155 (208)
....+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNR-YLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 346788999999999999999999997 99999999999999 9999999999999999999865
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.73 E-value=1e-18 Score=117.88 Aligned_cols=58 Identities=26% Similarity=0.497 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 94 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 94 ~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTH-YPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhcc
Confidence 589999999999999999997 99999999999999 99999999999999999998754
No 43
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=2.9e-18 Score=126.06 Aligned_cols=66 Identities=26% Similarity=0.494 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCC---------------CCccccccccccchhhHHh
Q 028506 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQ---------------ISETNVYNWFQNRRARLKR 153 (208)
Q Consensus 89 ~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~g---------------ls~~~V~vWFQNRR~k~Kr 153 (208)
.+.+|.|+.|++.|+.+||.+|..++ ||+..+|+.||..| + |++.+|+|||||||+|+|+
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~-yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQ-YPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999997 99999999999999 8 9999999999999999999
Q ss_pred hhcCCC
Q 028506 154 KQSGVV 159 (208)
Q Consensus 154 ~~~~~~ 159 (208)
+.....
T Consensus 80 ~~~~~~ 85 (95)
T 2cuf_A 80 RANIAA 85 (95)
T ss_dssp HHHCCC
T ss_pred HhhccC
Confidence 987643
No 44
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.73 E-value=1.9e-18 Score=115.25 Aligned_cols=57 Identities=26% Similarity=0.381 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHH
Q 028506 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (208)
Q Consensus 91 ~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~K 152 (208)
+++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQR-YLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999997 99999999999999 9999999999999999975
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=2.1e-18 Score=127.23 Aligned_cols=64 Identities=30% Similarity=0.392 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcC
Q 028506 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (208)
Q Consensus 89 ~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~ 157 (208)
...++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+..+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNK-YLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhcc
Confidence 46788999999999999999999997 99999999999999 999999999999999999998764
No 46
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.72 E-value=1.5e-18 Score=117.36 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHH
Q 028506 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (208)
Q Consensus 89 ~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~K 152 (208)
++.++.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~-yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQ-SLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCC-CcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 35778899999999999999999997 99999999999999 9999999999999999975
No 47
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.4e-18 Score=118.79 Aligned_cols=61 Identities=18% Similarity=0.457 Sum_probs=56.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 93 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 93 r~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
++|..||..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+.....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNP-LPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 4567799999999999999997 99999999999999 9999999999999999999976544
No 48
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.4e-18 Score=120.10 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
.+.+.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+.....
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRNQ-FPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSS-SCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCCccCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhcccC
Confidence 3455689999999999999999997 99999999999999 9999999999999999999876543
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=114.10 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 96 t~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
|.|+..|+..||..|..++ ||+..++..||..| ||++.+|+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQK-YLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcC-CcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 6799999999999999997 99999999999999 999999999999999999985
No 50
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.71 E-value=2.9e-18 Score=126.30 Aligned_cols=64 Identities=19% Similarity=0.388 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhh
Q 028506 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (208)
Q Consensus 87 ~~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~ 155 (208)
+....+|.|+.|+..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+..
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRTQ-WPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhc
Confidence 3345678899999999999999999997 99999999999999 9999999999999999999864
No 51
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=5.9e-18 Score=118.65 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=58.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcC
Q 028506 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~ 157 (208)
..++.|+.|+..|+.+||..|..++ ||+..++.+||..| ||++.+|+|||||||+|+|+....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQ-FPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCcC
Confidence 4677899999999999999999997 99999999999999 999999999999999999987654
No 52
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=8.9e-18 Score=118.82 Aligned_cols=62 Identities=23% Similarity=0.377 Sum_probs=56.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCCC
Q 028506 93 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (208)
Q Consensus 93 r~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~~ 159 (208)
..|..||..|+.+||..|..++ ||+..+|++||..| ||++.+|+|||||||+|+|+....-.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~-YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~l~w~ 66 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQ-WARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQLKWF 66 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCCSST
T ss_pred CCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHHHHHH
Confidence 3566799999999999999997 99999999999999 99999999999999999998766543
No 53
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.3e-17 Score=116.63 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcC
Q 028506 89 KLTARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (208)
Q Consensus 89 ~~~rr~Rt~~s~~ql~~Le~~F~~---~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~ 157 (208)
++.++.|+.|+..|+.+||.+|.. ++ ||+..++..||..| ||++.+|+|||||||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHP-YPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccccc
Confidence 357788999999999999999987 86 99999999999999 999999999999999999987643
No 54
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=1.2e-17 Score=116.88 Aligned_cols=63 Identities=22% Similarity=0.401 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 91 TARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 91 ~rr~Rt~~s~~ql~~Le~~F---~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
++|.|+.|+..|+.+||.+| ..++ ||+..++..||..| ||++.+|+|||||||+|+|+.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCC-CcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcccccccc
Confidence 36789999999999999999 8887 99999999999999 9999999999999999999876543
No 55
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=123.44 Aligned_cols=70 Identities=36% Similarity=0.574 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHH-------------HhC----CCCccccccccccchhhH
Q 028506 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELA-------------KHG----QISETNVYNWFQNRRARL 151 (208)
Q Consensus 89 ~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~-------------~~~----gls~~~V~vWFQNRR~k~ 151 (208)
++.||.|+.|++.|+.+||..|..++ ||+..+|++||..|. .|| +|++.+|+|||||||+++
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 46888999999999999999999997 999999999999993 234 799999999999999999
Q ss_pred HhhhcCCC
Q 028506 152 KRKQSGVV 159 (208)
Q Consensus 152 Kr~~~~~~ 159 (208)
|++++...
T Consensus 83 kr~~~~~~ 90 (102)
T 2da6_A 83 AFRQKLAM 90 (102)
T ss_dssp HHHHHHHH
T ss_pred HHhhHhhh
Confidence 99876653
No 56
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=3e-17 Score=119.57 Aligned_cols=57 Identities=14% Similarity=0.374 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 97 ~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
.|+..|+.+||..|..++ ||+..+|.+||..| ||++.+|+|||||||+|+|++....
T Consensus 17 ~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSS-VLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHHh
Confidence 789999999999999997 99999999999999 9999999999999999998866544
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.68 E-value=4.7e-17 Score=116.89 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=59.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCCC
Q 028506 90 LTARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~---~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~~ 159 (208)
+.++.|+.|+..|+.+|+.+|.. ++ ||+..++..||..+ ||++.+|+|||||||+|.|+......
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~p-YPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~~~~~ 73 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKA-YPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDMLQQR 73 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTC-CCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHHTCCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHHHHhc
Confidence 57788999999999999999987 57 99999999999999 99999999999999999999876654
No 58
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=9.1e-18 Score=114.53 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=55.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---hhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHh
Q 028506 90 LTARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F---~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr 153 (208)
..++.|+.|+..|+.+||.+| ..++ ||+..++..||..| ||++.+|++||||||+|+||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999 8887 99999999999999 99999999999999999886
No 59
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.67 E-value=3.2e-17 Score=118.31 Aligned_cols=62 Identities=23% Similarity=0.407 Sum_probs=56.7
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcC
Q 028506 91 TARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (208)
Q Consensus 91 ~rr~Rt~~s~~ql~~Le~~F---~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~ 157 (208)
.||.|+.|+..|+.+||.+| ..++ ||+..++..||..| ||++.+|+|||||||+|+|+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~-yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSC-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhcccc
Confidence 36789999999999999999 8887 99999999999999 999999999999999999997654
No 60
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=116.46 Aligned_cols=59 Identities=22% Similarity=0.433 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCCC
Q 028506 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (208)
Q Consensus 96 t~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~~ 159 (208)
..||..|+.+||..|..++ ||+..++..||..| ||++.+|+|||||||+|+|+......
T Consensus 18 k~~t~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSS-FPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred ccCCHHHHHHHHHHHccCC-CCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 3489999999999999997 99999999999999 99999999999999999988766553
No 61
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.67 E-value=3.4e-17 Score=110.28 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 94 QRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 94 ~Rt~~s~~ql~~Le~~F~~---~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
+|+.|+..|+.+||..|.. ++ ||+..++..||..+ ||++.+|++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCC-CcCHHHHHHHHHHH----CcCHHHHHHHHHHHHcccccC
Confidence 3688999999999999999 87 99999999999999 999999999999999999874
No 62
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.67 E-value=1.2e-17 Score=123.97 Aligned_cols=66 Identities=35% Similarity=0.552 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHH------------------HHHhCC---CCcccccccccc
Q 028506 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAE------------------LAKHGQ---ISETNVYNWFQN 146 (208)
Q Consensus 88 ~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~------------------L~~~~g---ls~~~V~vWFQN 146 (208)
.++.||.|+.|++.|+.+||..|..++ ||+..+|++||.. | | |++.+|+|||||
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~-yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~l----g~~~lse~qV~vWFqN 80 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGL----GSNLVTEVRVYNWFAN 80 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTT----GGGCCCHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhcccccccccccccccccc----CccccCcceeeeccHH
Confidence 346788999999999999999999997 9999999999999 6 8 999999999999
Q ss_pred chhhHHhhhcCC
Q 028506 147 RRARLKRKQSGV 158 (208)
Q Consensus 147 RR~k~Kr~~~~~ 158 (208)
||+++|+++...
T Consensus 81 RR~k~k~k~~~~ 92 (99)
T 1lfb_A 81 RRKEEAFRHKLA 92 (99)
T ss_dssp HHHTTSCCC---
T ss_pred HHHHHHHhchhh
Confidence 999998776544
No 63
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=3.4e-17 Score=112.77 Aligned_cols=59 Identities=22% Similarity=0.384 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhH
Q 028506 88 QKLTARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (208)
Q Consensus 88 ~~~~rr~Rt~~s~~ql~~Le~~F~~-~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~ 151 (208)
.+.++|.||.|+.+||.+|+..|.. +. ||+.+.|+.||..| ||++++|+|||||||--.
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~-yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGL-YPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh----CCCHHHHHHhhccceeee
Confidence 3468899999999999999999999 86 99999999999999 999999999999999754
No 64
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.64 E-value=1.1e-16 Score=115.77 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=55.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHh
Q 028506 90 LTARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (208)
Q Consensus 90 ~~rr~Rt~~s~~ql~~Le~~F~~---~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr 153 (208)
++++.|+.|+..|+.+||.+|.. ++ ||+..++..||..| ||++.+|++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSC-CCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccC
Confidence 46667999999999999999999 97 99999999999999 99999999999999999873
No 65
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=3.2e-17 Score=114.85 Aligned_cols=60 Identities=20% Similarity=0.364 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH-hhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhh
Q 028506 91 TARQRWTPTPAQLQILEHVY-DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (208)
Q Consensus 91 ~rr~Rt~~s~~ql~~Le~~F-~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~ 155 (208)
..+.|..++..|+.+||..| ..++ ||+..+|.+||..| ||++.+|+|||||||+|+|+..
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~-yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTK-YPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCCC
Confidence 33455667788999999999 9996 99999999999999 9999999999999999998753
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=6.4e-17 Score=112.50 Aligned_cols=57 Identities=32% Similarity=0.408 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcC
Q 028506 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (208)
Q Consensus 96 t~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~ 157 (208)
..++..|+..||..|..++ ||+..+|..||..| ||++++|+|||||||+|+||....
T Consensus 9 ~~~t~~ql~~LE~~F~~~~-yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQK-YLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhhh
Confidence 4679999999999999997 99999999999999 999999999999999999986643
No 67
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.63 E-value=1.4e-16 Score=114.25 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHhh---cCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhh
Q 028506 93 RQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (208)
Q Consensus 93 r~Rt~~s~~ql~~Le~~F~~---~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~ 155 (208)
+.|+.|+..|+.+||.+|.. ++ ||+..++..||..| ||++.+|+|||||||+|+|+..
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~-yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSC-CCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHHH----CCCHHHcccccHHHHccccccc
Confidence 45566999999999999999 97 99999999999999 9999999999999999998853
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.62 E-value=1.4e-16 Score=109.39 Aligned_cols=52 Identities=17% Similarity=0.386 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhh
Q 028506 99 TPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (208)
Q Consensus 99 s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~ 155 (208)
+..|+..||..|..++ ||+..++.+||..| ||++.+|++||||||+|+|+-.
T Consensus 12 ~~~Ql~~LE~~F~~~~-YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQ-FPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGG-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 6899999999999997 99999999999999 9999999999999999999753
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=109.63 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=50.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 95 Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
+..++..|+..||..|..++ ||+..+|..||..| ||++++|+|||||||+|.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNA-QPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCCC
Confidence 34567899999999999996 99999999999999 999999999999999998763
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=2.9e-16 Score=107.60 Aligned_cols=50 Identities=24% Similarity=0.517 Sum_probs=45.2
Q ss_pred HHHHHHHHHHH-hhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 100 PAQLQILEHVY-DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 100 ~~ql~~Le~~F-~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
+.++.+||..| ..+. ||+..+|.+||..| ||++++|+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~-yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITK-HPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCC-CcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCCC
Confidence 34799999999 5575 99999999999999 999999999999999999863
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.58 E-value=5.8e-16 Score=124.07 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhc
Q 028506 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (208)
Q Consensus 88 ~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~ 156 (208)
..+.||.|+.|+..|+.+||..|..++ ||+..+|..||..| ||++.+|+|||||||+|.|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENK-RPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccCC
Confidence 346788999999999999999999997 99999999999999 99999999999999999987544
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.57 E-value=2.2e-16 Score=130.07 Aligned_cols=62 Identities=35% Similarity=0.571 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCC---------------------CCccccccccc
Q 028506 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQ---------------------ISETNVYNWFQ 145 (208)
Q Consensus 87 ~~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~g---------------------ls~~~V~vWFQ 145 (208)
..++.||.|+.|++.|+.+||..|..++ ||+..+|++||..| + |++.+|+||||
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~-yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFq 185 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFA 185 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHC-CCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh----CchhhccccccccccccccccccCccccchhch
Confidence 3456789999999999999999999996 99999999999999 7 99999999999
Q ss_pred cchhhHHh
Q 028506 146 NRRARLKR 153 (208)
Q Consensus 146 NRR~k~Kr 153 (208)
|||++.|.
T Consensus 186 NRR~~~k~ 193 (194)
T 1ic8_A 186 NRRKEEAF 193 (194)
T ss_dssp HHHHHCC-
T ss_pred hhhhhhhc
Confidence 99999764
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=4.5e-15 Score=102.41 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 97 TPTPAQLQILEHVYD---ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 97 ~~s~~ql~~Le~~F~---~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
.|+..|+.+|+.+|. .++ ||+..++..||..+ ||++.+|++||||||+|.|+....+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~p-yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHP-YPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC---
T ss_pred cCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 689999999999999 997 99999999999999 9999999999999999999865543
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.42 E-value=5.4e-14 Score=117.52 Aligned_cols=64 Identities=36% Similarity=0.608 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHH----h-------------CCCCccccccccccchh
Q 028506 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAK----H-------------GQISETNVYNWFQNRRA 149 (208)
Q Consensus 87 ~~~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~----~-------------~gls~~~V~vWFQNRR~ 149 (208)
..++.||.|+.|++.|+.+||..|..++ ||+..+|++||..|.. + ..|++.+|+|||+|||+
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~-YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 4456889999999999999999999997 9999999999999821 0 12889999999999998
Q ss_pred hH
Q 028506 150 RL 151 (208)
Q Consensus 150 k~ 151 (208)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 74
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=95.84 Aligned_cols=46 Identities=15% Similarity=0.442 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhh
Q 028506 100 PAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (208)
Q Consensus 100 ~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k 150 (208)
..|+..|+.+|..++ +|+.+++..||..| ||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~-~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNM-EPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 578999999999997 99999999999999 99999999999999974
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=94.74 Aligned_cols=57 Identities=26% Similarity=0.323 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcC
Q 028506 96 WTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (208)
Q Consensus 96 t~~s~~ql~~Le~~F~~---~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~ 157 (208)
..|+..++.+|+.+|.. ++ ||+..++.+||..+ ||++.||++||+|+|.|.++....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~np-YPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNA-YPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGG-SCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHHHH
Confidence 56899999999999987 87 99999999999999 999999999999999999986543
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.19 E-value=4.1e-12 Score=112.69 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=52.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHH
Q 028506 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (208)
Q Consensus 92 rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~K 152 (208)
++.|+.++..|+..||+.|..++ ||+..+|.+||..| ||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~-yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQ-SLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCC-CcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 45678899999999999999996 99999999999999 9999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.66 E-value=3.6e-09 Score=64.40 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.6
Q ss_pred cccccccccchhhHHhhhcCC
Q 028506 138 TNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 138 ~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
++|+|||||||+|+|+.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999987763
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.88 E-value=0.048 Score=37.25 Aligned_cols=38 Identities=24% Similarity=0.524 Sum_probs=34.7
Q ss_pred HHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccc
Q 028506 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 145 (208)
Q Consensus 103 l~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQ 145 (208)
...|+.+|...+ .+...+...|+.+. +|+..+|+-||-
T Consensus 18 ~e~L~~Yy~~hk-~L~EeDl~~L~~ks----kms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAAHQ-QLRETDIPQLSQAS----RLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHHTC-CCCTTHHHHHHHHT----TCCHHHHHHHHH
T ss_pred chHHHHHHHHhc-ccchhhHHHHHHHh----CCCHHHHHHHHH
Confidence 358999999996 99999999999988 999999999995
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=63.16 E-value=5.6 Score=24.97 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCcccccccccc
Q 028506 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (208)
Q Consensus 95 Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQN 146 (208)
|..|+++....+..++... .+......++|..+ ||+...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g--~s~~~~~~~vA~~~----gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND--NDCKGNQRATARKY----NIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC--TTTTTCHHHHHHHT----TSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC--CCcchHHHHHHHHH----CcCHHHHHHHHHH
Confidence 4568888766665555443 33223356899999 9999999999753
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=57.39 E-value=9.9 Score=25.81 Aligned_cols=45 Identities=11% Similarity=0.204 Sum_probs=31.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccc
Q 028506 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 145 (208)
Q Consensus 91 ~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQ 145 (208)
.++.+..++.++....-..+... .+ ..+||+.+ ||+...|+.|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g--~s----~~~iA~~~----gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG--ES----KASVARDI----GVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT--CC----HHHHHHHH----TCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC--CC----HHHHHHHH----CcCHHHHHHHHH
Confidence 34456678888755544555432 32 45889999 999999999974
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=57.32 E-value=11 Score=27.06 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhh
Q 028506 94 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (208)
Q Consensus 94 ~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k 150 (208)
+|..+|.++...+-..+..+. .+.. .+||+.+ |++...|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g-~~~~---~~~A~~~----gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENP-DLRK---GEIARRF----NIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCT-TSCH---HHHHHHH----TCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCC-CCcH---HHHHHHh----CCCHHHHHHHHhchhhh
Confidence 567899998766666664443 4443 3688899 99999999999776653
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=55.26 E-value=7.1 Score=26.63 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 98 ~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
+++.+..+|...|-.+ +. ..+||..| |++...|+.+...-|.+.|+.
T Consensus 38 L~~~~r~vl~l~~~~g--~s----~~eIA~~l----gis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG--WS----TAQIATDL----GIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp SCHHHHHHHHHHHTSC--CC----HHHHHHHH----TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 4677778887766544 22 45899999 999999999887666665554
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=52.11 E-value=14 Score=21.04 Aligned_cols=40 Identities=8% Similarity=0.137 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCcccccccccc
Q 028506 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (208)
Q Consensus 97 ~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQN 146 (208)
.++..+...+...+..+ +. ..+||+.| |++...|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~g--~s----~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--VS----LHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--CC----HHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHhh
Confidence 45666664444555443 32 45889999 9999999999753
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=48.10 E-value=9.3 Score=24.08 Aligned_cols=46 Identities=15% Similarity=-0.043 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHH
Q 028506 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (208)
Q Consensus 97 ~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~K 152 (208)
.+++.+..+|...|-.+ ++ ..+||..| |++...|+.+...-+.+-+
T Consensus 15 ~L~~~~r~il~l~~~~g--~s----~~eIA~~l----gis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG--LS----YADAAAVC----GCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC--CC----HHHHHHHH----TSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHH
Confidence 36788888888776443 22 34899999 9999999998764444443
No 86
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=47.69 E-value=7.6 Score=29.62 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=31.1
Q ss_pred HHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchh
Q 028506 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (208)
Q Consensus 103 l~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~ 149 (208)
+......|.... | .......||+.. |++...|+..|.++-.
T Consensus 34 l~aa~~lf~~~G-~-~~~tv~~IA~~a----gvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 34 VNAAIEVLAREG-A-RGLTFRAVDVEA----NVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHHTC-T-TTCCHHHHHHHS----SSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHHhC-h-hhccHHHHHHHc----CCCcchHHHhCCCHHH
Confidence 445555687773 5 445677889898 9999999999999744
No 87
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=47.29 E-value=0.21 Score=38.86 Aligned_cols=30 Identities=3% Similarity=-0.214 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCH
Q 028506 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRK 119 (208)
Q Consensus 89 ~~~rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~ 119 (208)
.+.+|.||.|+..|+..|+..|+.++ ||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~-~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANP-VEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCC-CCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCC-Cccc
Confidence 35678999999999999999999997 8875
No 88
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=40.17 E-value=13 Score=21.50 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccch
Q 028506 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (208)
Q Consensus 98 ~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR 148 (208)
++..+...+...+... . ...+||..| |++...|+.|+....
T Consensus 6 ~~~~~~~~i~~l~~~g--~----s~~~ia~~l----gvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H----PRQQLAIIF----GIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C----CHHHHHHTT----SCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC--C----CHHHHHHHH----CCCHHHHHHHHHHcc
Confidence 3444444444445432 2 245788888 999999999986543
No 89
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=39.89 E-value=21 Score=24.27 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCCHhHHHHHHHHHHHhCCCCccccccccc
Q 028506 95 RWTPTPAQLQILEHVYDEC-KGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 145 (208)
Q Consensus 95 Rt~~s~~ql~~Le~~F~~~-~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQ 145 (208)
|..|+.++....-..+... . . ....+|..+ ||+...|+.|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g-~----s~~~ia~~~----gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG-A----SLQQIANDL----GINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG-S----CHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-C----hHHHHHHHH----CcCHHHHHHHHH
Confidence 3567887765444444322 2 2 245889999 999999999964
No 90
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=39.28 E-value=17 Score=26.11 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 98 ~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
+++.+..++...|..+ +. ..+||..| |++...|+.+...-|.+.++.
T Consensus 23 L~~~~r~vl~l~y~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 23 LTDKQMNYIELYYADD--YS----LAEIADEF----GVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp SCHHHHHHHHHHHHTC--CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 5778888888876554 22 34899999 999999999987666655543
No 91
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=36.49 E-value=23 Score=24.33 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHH
Q 028506 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (208)
Q Consensus 96 t~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~K 152 (208)
..+++.+..+|..++.. +. ..+||..| |++...|+.+..+-+.|.+
T Consensus 26 ~~Lt~~e~~vl~l~~~g---~s----~~eIA~~l----~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG---LT----NKQIADRM----FLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHHHTT---CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcC---CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHc
Confidence 35788999999886322 32 34899999 9999999987765444443
No 92
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=36.32 E-value=18 Score=26.13 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 97 ~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
.+++.+..+|. .|-.+ + ...+||..| |++...|+.+...-|.+-|+.
T Consensus 109 ~L~~~~r~v~~-~~~~g--~----s~~EIA~~l----gis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG--Y----SYREIATIL----SKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTTT--C----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC--C----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Confidence 46677777777 44333 3 235899999 999999999876555555543
No 93
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=35.69 E-value=24 Score=27.43 Aligned_cols=52 Identities=12% Similarity=0.200 Sum_probs=34.4
Q ss_pred CCCCCCCCHHH-HHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchh
Q 028506 92 ARQRWTPTPAQ-LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (208)
Q Consensus 92 rr~Rt~~s~~q-l~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~ 149 (208)
++.|...+... +......|.... | .......||+.+ |++...|+..|.++-.
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~G-~-~~~s~~~IA~~a----Gvs~~tlY~~F~~K~~ 71 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEVG-L-DGVSTRRLAKRL----GVEQPSLYWYFRTKRD 71 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHHC-G-GGCCHHHHHHHH----TSCTHHHHTTCSSHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcC-c-ccCCHHHHHHHh----CCChhHHHHHcCCHHH
Confidence 34444555544 555566677763 4 445677899999 9999999999998744
No 94
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=31.40 E-value=47 Score=23.17 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccc
Q 028506 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNR 147 (208)
Q Consensus 95 Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNR 147 (208)
...+++.+..+|..++ .+ +. ..+||..| |+++..|+.+..+-
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G--~s----~~EIA~~L----~iS~~TV~~~l~ri 73 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EG--FL----VTEIAKKL----NRSIKTISSQKKSA 73 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HT--CC----HHHHHHHH----TSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cC--CC----HHHHHHHH----CcCHHHHHHHHHHH
Confidence 4568999999998765 32 32 25899999 99999999876543
No 95
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=30.74 E-value=56 Score=25.75 Aligned_cols=51 Identities=10% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCCCCCCCHHH-HHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccch
Q 028506 92 ARQRWTPTPAQ-LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (208)
Q Consensus 92 rr~Rt~~s~~q-l~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR 148 (208)
++.+...+... +......|.... | .......||+.+ |++...|+..|.|+-
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~G-~-~~~s~~~IA~~a----Gvs~~tlY~hF~~K~ 61 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTVG-E-RGLTFRALAERL----ATGPGAIYWHITGKA 61 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHTT-T-TTCCHHHHHHHH----TSCGGGGGGTCCCHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhcC-c-ccCCHHHHHHHH----CCChHHHHHhcCCHH
Confidence 33444455543 455566677773 4 445677899999 999999999999974
No 96
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.76 E-value=23 Score=25.34 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 98 ~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
+++.+..+|...|-.+ +. ..+||..| |++...|+.+...-|.+.++.
T Consensus 26 L~~~~r~vl~l~~~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED--YS----LSEIADTF----NVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp SCHHHHHHHHHHHTSC--CC----HHHHHHHT----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 4677788887776554 22 34889999 999999999887666665543
No 97
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=29.52 E-value=29 Score=26.69 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccch
Q 028506 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (208)
Q Consensus 102 ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR 148 (208)
-+......|.... |- ......||+.. |++...|+..|.++-
T Consensus 35 Il~aA~~lf~~~G-~~-~~t~~~IA~~A----gvs~~t~Y~~F~sKe 75 (230)
T 2iai_A 35 LLSVAVQVFIERG-YD-GTSMEHLSKAA----GISKSSIYHHVTGKE 75 (230)
T ss_dssp HHHHHHHHHHHHC-TT-TCCHHHHHHHH----TSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHHcC-cc-ccCHHHHHHHH----CCChhHHHHhCCCHH
Confidence 3556667787774 54 44677899998 999999999999873
No 98
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=29.50 E-value=37 Score=21.33 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchh
Q 028506 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (208)
Q Consensus 95 Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~ 149 (208)
-..+++.+..+|..++ .+ + ...+||..| |++...|+.+...-+.
T Consensus 9 ~~~L~~~e~~il~~~~-~g--~----s~~eIA~~l----~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 9 KPLLTKREREVFELLV-QD--K----TTKEIASEL----FISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCCCHHHHHHHHHHT-TT--C----CHHHHHHHH----TSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-cC--C----CHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 3457899999998742 22 3 234899999 9999999987764333
No 99
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=29.45 E-value=28 Score=23.14 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhh
Q 028506 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (208)
Q Consensus 96 t~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k 150 (208)
..+++.+..+|..++ .+ +. ..+||..| |++...|+.+..+-+.|
T Consensus 20 ~~Lt~~e~~vl~l~~-~g--~s----~~eIA~~l----~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 20 NQLTPRERDILKLIA-QG--LP----NKMIARRL----DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GGSCHHHHHHHHHHT-TT--CC----HHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH-cC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 458899999998843 22 32 34899999 99999999876543333
No 100
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=29.20 E-value=22 Score=22.48 Aligned_cols=48 Identities=4% Similarity=0.109 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhh
Q 028506 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (208)
Q Consensus 97 ~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k 150 (208)
.+++.+..+|...|-... + ......+||..| |++...|+.+...-+.|
T Consensus 5 ~L~~~er~il~l~~~l~~-~-~g~s~~eIA~~l----gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDM-N-TDYTLEEVGKQF----DVTRERIRQIEAKALRK 52 (68)
T ss_dssp CCCHHHHHHHHHHTTTTS-S-SCCCHHHHHHHH----TCCHHHHHHHHHHHHHG
T ss_pred cCCHHHHHHHHHHHccCC-C-CCCCHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 467888889888873210 0 112245899999 99999999876533333
No 101
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=29.08 E-value=31 Score=22.12 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHH
Q 028506 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (208)
Q Consensus 97 ~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~K 152 (208)
.+++.+..+|...|-... . ......+||..| |++...|+.+...-+.+-+
T Consensus 10 ~L~~~er~il~l~~~l~~-~-~~~s~~eIA~~l----~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLID-G-REHTLEEVGAYF----GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTT-S-SCCCHHHHHHHH----TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhccc-C-CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 468888899988875110 0 011235899999 9999999998754444443
No 102
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=27.80 E-value=22 Score=26.38 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccch
Q 028506 101 AQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (208)
Q Consensus 101 ~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR 148 (208)
.-+..-...|.... | . .....||+.. |++...|+..|.|+-
T Consensus 19 ~Il~aA~~lf~~~G-~-~-~s~~~IA~~a----gvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 19 KILAAAVRVFSEEG-L-D-AHLERIAREA----GVGSGTLYRNFPTRE 59 (194)
T ss_dssp HHHHHHHHHHHHHC-T-T-CCHHHHHHHT----TCCHHHHHHHCCSHH
T ss_pred HHHHHHHHHHHhcC-c-C-CCHHHHHHHh----CCChHHHHHHcCCHH
Confidence 34555666788884 7 5 7889999998 999999999999873
No 103
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=27.22 E-value=25 Score=25.83 Aligned_cols=36 Identities=19% Similarity=0.463 Sum_probs=23.7
Q ss_pred HHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhhhcCC
Q 028506 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (208)
Q Consensus 104 ~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~~~~~ 158 (208)
.++.-.|+.|+ ||+.. |- ++- =.|||.+|+.++.+.
T Consensus 16 RiIkiLyQSNP-yP~pe-------------GT--Rqa---RRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 16 RLIKFLYQSNP-PPNPE-------------GT--RQA---RRNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHSSC-CCCCC-------------CC--TTT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-CCCCC-------------Cc--hhh---hHhHHHHHHHHHHHH
Confidence 45555689998 99763 21 111 158999999887764
No 104
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=26.14 E-value=32 Score=25.73 Aligned_cols=47 Identities=9% Similarity=0.004 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 98 ~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
+++.+..+|.-.|-.+ ++ ..+||..| |++...|+.+...-|.+.|+.
T Consensus 141 L~~~~r~vl~l~~~~g--~s----~~EIA~~l----gis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG--LS----YEEIAAIM----DCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC--CC----HHHHHHHT----TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC--CC----HHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Confidence 4555556665554333 22 34888899 999999999887666665554
No 105
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.63 E-value=35 Score=22.97 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhh
Q 028506 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (208)
Q Consensus 96 t~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k 150 (208)
..+++.+..+|.-++ .+ +... +||..| |++...|+.+..+-+.|
T Consensus 28 ~~Lt~~e~~vl~l~~-~g--~s~~----eIA~~l----~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 28 EMLTEREMEILLLIA-KG--YSNQ----EIASAS----HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GGCCSHHHHHHHHHH-TT--CCTT----HHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH-cC--CCHH----HHHHHH----CcCHHHHHHHHHHHHHH
Confidence 357888888888753 22 4433 899999 99999999876544333
No 106
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=24.35 E-value=34 Score=22.89 Aligned_cols=48 Identities=10% Similarity=0.241 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhh
Q 028506 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (208)
Q Consensus 97 ~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k 150 (208)
.+++.+..+|...|-.... ......+||..| |++...|+.+...-+.|
T Consensus 18 ~L~~~er~vl~l~~~l~~~--~~~s~~EIA~~l----gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG--KPKTLEEVGQYF----NVTRERIRQIEVKALRK 65 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS--SCCCHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCC--CCCCHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 4678888888887741100 012245889999 99999999876533333
No 107
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.15 E-value=45 Score=26.51 Aligned_cols=51 Identities=10% Similarity=0.127 Sum_probs=35.2
Q ss_pred CCCCCCCHHH-HHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchh
Q 028506 93 RQRWTPTPAQ-LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (208)
Q Consensus 93 r~Rt~~s~~q-l~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~ 149 (208)
+.|...+... +..-...|.... | .......||+.+ |++...|+..|.|+-.
T Consensus 14 ~~r~~~tr~~Il~AA~~l~~e~G-~-~~~S~~~IA~~a----Gvs~~tlY~hF~sK~~ 65 (243)
T 2g7l_A 14 PAKPALSRRWIVDTAVALMRAEG-L-EKVTMRRLAQEL----DTGPASLYVYVANTAE 65 (243)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHC-S-SSCCHHHHHHHT----TSCHHHHTTTCCSHHH
T ss_pred CCCcccCHHHHHHHHHHHHHhcC-c-hhcCHHHHHHHH----CCChhHHHHHcCCHHH
Confidence 3344455544 445566677773 5 445677899999 9999999999998743
No 108
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.38 E-value=43 Score=25.12 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhh
Q 028506 100 PAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (208)
Q Consensus 100 ~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k 150 (208)
..-+..-...|.... |- ......||+.. |++...|+..|.|+-.=
T Consensus 14 ~~Il~aA~~lF~~~G-y~-~ts~~~IA~~a----Gvsk~tlY~~F~sKe~L 58 (202)
T 2i10_A 14 QVALQTAMELFWRQG-YE-GTSITDLTKAL----GINPPSLYAAFGSKRDL 58 (202)
T ss_dssp HHHHHHHHHHHHHHT-TT-TCCHHHHHHHH----TCCHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHHHHHhC-cc-cCCHHHHHHHh----CCChHHHHHHhCCHHHH
Confidence 344555566788874 54 45678899998 99999999999987443
No 109
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=23.05 E-value=31 Score=25.66 Aligned_cols=40 Identities=10% Similarity=0.433 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccch
Q 028506 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (208)
Q Consensus 103 l~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR 148 (208)
+......|.... | .......||+.. |++...|+..|.++-
T Consensus 37 l~aa~~l~~~~G-~-~~~tv~~Ia~~a----gvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 37 IKVATELFREKG-Y-YATSLDDIADRI----GFTKPAIYYYFKSKE 76 (218)
T ss_dssp HHHHHHHHHHTC-T-TTCCHHHHHHHH----TCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcC-c-ccCcHHHHHHHh----CCCHHHHHHHcCCHH
Confidence 445556687774 5 345677899998 999999999999874
No 110
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=23.01 E-value=45 Score=24.23 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccch
Q 028506 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (208)
Q Consensus 102 ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR 148 (208)
-+..-...|.... | .......||+.. |++...|+..|.|+-
T Consensus 17 Il~aA~~lf~~~G-~-~~~t~~~IA~~a----gvs~~t~Y~~F~sK~ 57 (199)
T 3on2_A 17 LLARAESTLEKDG-V-DGLSLRQLAREA----GVSHAAPSKHFRDRQ 57 (199)
T ss_dssp HHHHHHHHHHHHC-G-GGCCHHHHHHHT----C-----CCCSSSSHH
T ss_pred HHHHHHHHHHhcC-h-hhhhHHHHHHHh----CCChHHHHHHhCCHH
Confidence 3445556677763 4 344677899998 999999999999874
No 111
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=22.56 E-value=33 Score=26.44 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccch
Q 028506 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (208)
Q Consensus 103 l~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR 148 (208)
+......|.... | .......||+.. |++...|+..|.|+-
T Consensus 50 l~aA~~lf~e~G-~-~~~t~~~IA~~a----Gvs~~tlY~~F~sK~ 89 (236)
T 3q0w_A 50 LATAENLLEDRP-L-ADISVDDLAKGA----GISRPTFYFYFPSKE 89 (236)
T ss_dssp HHHHHHHHHHSC-G-GGCCHHHHHHHH----TCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHcC-c-ccCCHHHHHHHh----CCcHHHHHHHCCCHH
Confidence 334445577763 4 445677899998 999999999999874
No 112
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=22.38 E-value=40 Score=25.96 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhhHHhh
Q 028506 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (208)
Q Consensus 97 ~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k~Kr~ 154 (208)
.+++.+..+|...|-.+ ++ ..+||..| |++...|+.+...-|.+.|+.
T Consensus 187 ~L~~~~r~vl~l~~~~g--~s----~~EIA~~l----gis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE--LP----AKEVAKIL----ETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTSC--CC----HHHHHHHT----TSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC--CC----HHHHHHHh----CCCHHHHHHHHHHHHHHHHHH
Confidence 36777788887776543 22 34888999 999999999887666665553
No 113
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=22.26 E-value=37 Score=26.96 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=33.4
Q ss_pred CCCCCCHHH-HHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccch
Q 028506 94 QRWTPTPAQ-LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (208)
Q Consensus 94 ~Rt~~s~~q-l~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR 148 (208)
.|...+... +..-...|.... | .......||+.+ |++...|+..|.|+-
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G-~-~~~s~~~IA~~a----Gvs~~tlY~hF~~K~ 74 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGD-A-ETFSVRKLAASL----GTDSSSLYRHFRNKT 74 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSS-C-CCCCHHHHHHHT----TSCHHHHHHHTSSHH
T ss_pred cchhhHHHHHHHHHHHHHHhcC-c-ccCCHHHHHHHh----CcCHHHHHHHcCCHH
Confidence 344555544 445556677763 4 445677899999 999999999999974
No 114
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.22 E-value=74 Score=24.44 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=21.3
Q ss_pred CCCHhHHHHHHHHHHHhCCCCccccccccccch
Q 028506 116 TPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (208)
Q Consensus 116 ~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR 148 (208)
..+..+++.|...+. ....-.|..||-||+
T Consensus 58 ~Lt~~ei~~l~~~i~---~~~~~~ip~w~lNr~ 87 (152)
T 3iz6_M 58 ELSAEEMDRLMAVVH---NPRQFKVPDWFLNRK 87 (152)
T ss_dssp TSCHHHHHHHHHHHH---SCSSCCCCCCSCSCC
T ss_pred cCCHHHHHHHHHHHH---hhcccCcchhhhhhh
Confidence 567788888887773 223345788999986
No 115
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.98 E-value=61 Score=22.03 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=30.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCcccccccccc
Q 028506 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (208)
Q Consensus 92 rr~Rt~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQN 146 (208)
......+++.+..+|.-.+ .+ +. ..+||..| |+++..|+....+
T Consensus 24 ~~~~~~Lt~rE~~Vl~l~~-~G--~s----~~eIA~~L----~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 24 QKEQDVLTPRECLILQEVE-KG--FT----NQEIADAL----HLSKRSIEYSLTS 67 (90)
T ss_dssp -----CCCHHHHHHHHHHH-TT--CC----HHHHHHHH----TCCHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHH-cC--CC----HHHHHHHH----CcCHHHHHHHHHH
Confidence 3445679999999998776 32 33 34899999 9999999876543
No 116
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=21.57 E-value=75 Score=22.36 Aligned_cols=41 Identities=7% Similarity=0.107 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCcccccccccc
Q 028506 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (208)
Q Consensus 96 t~~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQN 146 (208)
..++..+...+...+..+ +. ..+||..| |++...|+.|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G--~s----~~~ia~~l----gis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN--VS----LHEMSRKI----SRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT--CC----HHHHHHHH----TCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHc
Confidence 456777776666666543 32 45789999 9999999999864
No 117
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.91 E-value=30 Score=22.21 Aligned_cols=42 Identities=24% Similarity=0.213 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhh
Q 028506 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (208)
Q Consensus 98 ~s~~ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k 150 (208)
+++.+..+|.-++ .+ +. ..+||..| |++...|+.+...-+.|
T Consensus 17 L~~~e~~vl~l~~-~g--~s----~~eIA~~l----~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVLSAVV-AG--LP----NKSIAYDL----DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHHHHHT-TT--CC----HHHHHHHT----TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-cC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 5677777887642 22 32 34889999 99999999876543333
No 118
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=20.85 E-value=72 Score=23.48 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchh
Q 028506 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (208)
Q Consensus 102 ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~ 149 (208)
-+......|.... | .......||+.. |++...++..|.++-.
T Consensus 18 Il~aa~~lf~~~G-~-~~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~ 59 (195)
T 2iu5_A 18 IAKAFKDLMQSNA-Y-HQISVSDIMQTA----KIRRQTFYNYFQNQEE 59 (195)
T ss_dssp HHHHHHHHHHHSC-G-GGCCHHHHHHHH----TSCGGGGGGTCSSHHH
T ss_pred HHHHHHHHHHhCC-C-CeeCHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 3555566687774 4 345677899998 9999999999998743
No 119
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=20.75 E-value=61 Score=24.05 Aligned_cols=40 Identities=13% Similarity=0.353 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccc
Q 028506 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNR 147 (208)
Q Consensus 102 ql~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNR 147 (208)
-+......|.... |- ...+..||+.. |++...|+..|.++
T Consensus 19 Il~aA~~lf~~~G-~~-~~s~~~Ia~~a----gvs~~t~Y~yF~sK 58 (203)
T 3ccy_A 19 IIERAAAMFARQG-YS-ETSIGDIARAC----ECSKSRLYHYFDSK 58 (203)
T ss_dssp HHHHHHHHHHHTC-TT-TSCHHHHHHHT----TCCGGGGTTTCSCH
T ss_pred HHHHHHHHHHHcC-cc-cCCHHHHHHHh----CCCcCeeeeeeCCH
Confidence 3555566788874 54 45677899998 99999999999987
No 120
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=20.40 E-value=57 Score=23.83 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccch
Q 028506 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (208)
Q Consensus 103 l~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR 148 (208)
+......|.... | .......||+.. |++...|+..|.++-
T Consensus 23 l~aa~~l~~~~G-~-~~~s~~~Ia~~a----gvs~~t~Y~~F~sK~ 62 (206)
T 3kz9_A 23 MEIALEVFARRG-I-GRGGHADIAEIA----QVSVATVFNYFPTRE 62 (206)
T ss_dssp HHHHHHHHHHSC-C-SSCCHHHHHHHH----TSCHHHHHHHCCSHH
T ss_pred HHHHHHHHHhcC-c-ccccHHHHHHHh----CCCHHHHHHHcCCHH
Confidence 344445587773 4 345677899998 999999999999973
No 121
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=20.22 E-value=48 Score=24.50 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=31.3
Q ss_pred HHHHHHHHhhcCCCCCHhHHHHHHHHHHHhCCCCccccccccccchhh
Q 028506 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (208)
Q Consensus 103 l~~Le~~F~~~~~~Ps~~~r~~LA~~L~~~~gls~~~V~vWFQNRR~k 150 (208)
+......|.... |- ......||+.. |++...|+.+|.|+-.=
T Consensus 18 l~aA~~lf~e~G-~~-~~t~~~IA~~a----gvsk~tlY~~F~sKe~L 59 (192)
T 2fq4_A 18 LSASYELLLESG-FK-AVTVDKIAERA----KVSKATIYKWWPNKAAV 59 (192)
T ss_dssp HHHHHHHHHHHC-TT-TCCHHHHHHHH----TCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcC-cc-cccHHHHHHHc----CCCHHHHHHHCCCHHHH
Confidence 444455587773 53 45678899998 99999999999987443
Done!