BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028507
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1
SV=1
Length = 208
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/208 (92%), Positives = 201/208 (96%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNT+KWIDEVRTERGSDVI+VLV
Sbjct: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
GNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK LFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTK 180
Query: 181 QEEMVDVNLRSTTGNASQSQSQSSGCSC 208
QE+MVDVNL+S+ NAS +Q QS GCSC
Sbjct: 181 QEDMVDVNLKSSNANASLAQQQSGGCSC 208
>sp|Q9LFT9|RAH1E_ARATH Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2
SV=1
Length = 207
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/208 (86%), Positives = 196/208 (94%), Gaps = 1/208 (0%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVA+RQSFLNTSKWI++VRTERGSDVIIVLV
Sbjct: 61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
GNKTDLV+KRQVSIEEG+ K+R+ V+FIETSAKAGFNIKPLFRKIAAALPGMETLSSTK
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
Query: 181 QEEMVDVNLRSTTGNASQSQSQSSGCSC 208
QE+MVDVNL+ T+ N++Q + Q GC+C
Sbjct: 181 QEDMVDVNLK-TSSNSAQGEQQRGGCAC 207
>sp|Q9SID8|RAH1D_ARATH Ras-related protein RABH1d OS=Arabidopsis thaliana GN=RABH1D PE=3
SV=1
Length = 207
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/208 (85%), Positives = 188/208 (90%), Gaps = 1/208 (0%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA+R SFLNTSKWI+EVR ER DVIIVLV
Sbjct: 61 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTK 180
GNKTDLVEKRQVSIEEG++K RE VMFIETSAKAGFNIKPLFRKIAAALPGME+ S+TK
Sbjct: 121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIKPLFRKIAAALPGMESYSNTK 180
Query: 181 QEEMVDVNLRSTTGNASQSQSQSSGCSC 208
E+MVDVNL+ T+ N+SQ Q CSC
Sbjct: 181 NEDMVDVNLKPTS-NSSQGDQQGGACSC 207
>sp|Q9SMR4|RAH1C_ARATH Ras-related protein RABH1c OS=Arabidopsis thaliana GN=RABH1C PE=1
SV=1
Length = 214
Score = 323 bits (827), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 163/214 (76%), Positives = 183/214 (85%), Gaps = 6/214 (2%)
Query: 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
MA VS LAK+KLVFLGDQSVGKTSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRL
Sbjct: 1 MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60
Query: 61 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVL 119
QLWDTAGQERFRSLIPSYIRDSSVA+VVYDV++RQ+FLNTSKWI++V ERG S+VIIVL
Sbjct: 61 QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLS-S 178
VGNKTDLVEKRQVSI EGE K +E VMFIETSAK FNIK LFRKIAAALPG+++ S +
Sbjct: 121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPGVDSYSLA 180
Query: 179 TKQEEMVDVNLRSTTGNA----SQSQSQSSGCSC 208
TK ++MVDVNL++T+ ++ GCSC
Sbjct: 181 TKSDDMVDVNLKTTSNSSQGEQQGGAGGGGGCSC 214
>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3
Length = 208
Score = 316 bits (809), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 153/205 (74%), Positives = 175/205 (85%), Gaps = 6/205 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAVVVYD+ + SF T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEM 184
DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +E+M
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLRSTTGNASQSQSQS-SGCSC 208
+D+ L Q Q S GCSC
Sbjct: 189 IDIKLEK-----PQEQPVSEGGCSC 208
>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3
Length = 208
Score = 316 bits (809), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 153/205 (74%), Positives = 175/205 (85%), Gaps = 6/205 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAVVVYD+ + SF T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEM 184
DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +E+M
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLRSTTGNASQSQSQS-SGCSC 208
+D+ L Q Q S GCSC
Sbjct: 189 IDIKLEK-----PQEQPVSEGGCSC 208
>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2
Length = 208
Score = 315 bits (808), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 150/204 (73%), Positives = 173/204 (84%), Gaps = 4/204 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAVVVYD+ + SF T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEM 184
DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +E+M
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLRSTTGNASQSQSQSSGCSC 208
+D+ L + GCSC
Sbjct: 189 IDIKLE----KPQEQPVNEGGCSC 208
>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4
Length = 208
Score = 315 bits (808), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 150/204 (73%), Positives = 173/204 (84%), Gaps = 4/204 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAVVVYD+ + SF T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEM 184
DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +E+M
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDM 188
Query: 185 VDVNLRSTTGNASQSQSQSSGCSC 208
+D+ L + GCSC
Sbjct: 189 IDIKLE----KPQEQPVNEGGCSC 208
>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3
Length = 208
Score = 314 bits (804), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 151/205 (73%), Positives = 174/205 (84%), Gaps = 6/205 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+ AVVVYD+ + SF T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEM 184
DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K LFR++AAALPGME+ +E+M
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDKSREDM 188
Query: 185 VDVNLRSTTGNASQSQSQS-SGCSC 208
+D+ L Q Q S GCSC
Sbjct: 189 IDIKLEK-----PQEQPVSEGGCSC 208
>sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=1 SV=1
Length = 208
Score = 309 bits (792), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 145/204 (71%), Positives = 172/204 (84%), Gaps = 4/204 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAVVVYD+ + SF TSKWID+VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEM 184
DL +KRQ++IEEGE +++EL+VMFIETSAK G+N+K LFR++A+ALPGME + +E M
Sbjct: 129 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGM 188
Query: 185 VDVNLRSTTGNASQSQSQSSGCSC 208
+D+ L + + GCSC
Sbjct: 189 IDIKL----DKPQEPPASEGGCSC 208
>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1
Length = 208
Score = 309 bits (792), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 145/204 (71%), Positives = 172/204 (84%), Gaps = 4/204 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAVVVYD+ + SF TSKWID+VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEM 184
DL +KRQ++IEEGE +++EL+VMFIETSAK G+N+K LFR++A+ALPGME + +E M
Sbjct: 129 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGM 188
Query: 185 VDVNLRSTTGNASQSQSQSSGCSC 208
+D+ L + + GCSC
Sbjct: 189 IDIKL----DKPQEPPASEGGCSC 208
>sp|A6QR46|RAB6B_BOVIN Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1
Length = 208
Score = 309 bits (792), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 145/204 (71%), Positives = 172/204 (84%), Gaps = 4/204 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAVVVYD+ + SF TSKWID+VRTERGSDVII+LVGNKT
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEM 184
DL +KRQ++IEEGE +++EL+VMFIETSAK G+N+K LFR++A+ALPGME + +E M
Sbjct: 129 DLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEGM 188
Query: 185 VDVNLRSTTGNASQSQSQSSGCSC 208
+D+ L + + GCSC
Sbjct: 189 IDIKL----DKPQEPPASEGGCSC 208
>sp|Q9LV79|RAH1A_ARATH Ras-related protein RABH1a OS=Arabidopsis thaliana GN=RABH1A PE=2
SV=1
Length = 206
Score = 309 bits (792), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 150/199 (75%), Positives = 168/199 (84%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
YKLVFLGDQ VGKTSIIT FMY KFD +YQATIGIDFLSKT EDRT RLQLWDTAGQE
Sbjct: 8 YKLVFLGDQGVGKTSIITCFMYGKFDTSYQATIGIDFLSKTTRYEDRTFRLQLWDTAGQE 67
Query: 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RF+SL+PSYIRDSSVAV+VYDVAS+QSF+NTSKWI+EVR ERGS VIIVLVGNKTDLV K
Sbjct: 68 RFKSLVPSYIRDSSVAVIVYDVASKQSFINTSKWIEEVRAERGSYVIIVLVGNKTDLVNK 127
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 189
RQVSIEEGE K+RE +F+ETSAKAGFNIKPLF KI +AL G E +S TKQE++VDVNL
Sbjct: 128 RQVSIEEGENKAREFGALFMETSAKAGFNIKPLFCKITSALQGNEAVSWTKQEDLVDVNL 187
Query: 190 RSTTGNASQSQSQSSGCSC 208
+ ++ + Q S CSC
Sbjct: 188 KPLMFSSQANHQQESNCSC 206
>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1
PE=2 SV=1
Length = 205
Score = 302 bits (773), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/202 (72%), Positives = 169/202 (83%), Gaps = 3/202 (1%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+AL K+KLVFLG+QSVGKTSIITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 7 NALKKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 66
Query: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDSSVAVVVYD+ + SF T+KW+D+VR ERG DVIIVLVGNKT
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKT 126
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEM 184
DL +KRQVS E+GE K+R+LNVMFIETSAKAG+N+K LFRKIA ALPG+ + +Q +
Sbjct: 127 DLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQEETPEQPNI 186
Query: 185 VDVNLRSTTGNASQSQSQSSGC 206
V +N +A +SQ + C
Sbjct: 187 VIMN---PPKDAEESQGRQCPC 205
>sp|Q55FK2|RAB6_DICDI Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3
SV=1
Length = 208
Score = 300 bits (767), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 144/204 (70%), Positives = 171/204 (83%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
+ +L+KYKLVFLGDQSVGKTSIITRFMYD FD TYQATIGIDFLSKTMYLEDRTVRLQLW
Sbjct: 1 MESLSKYKLVFLGDQSVGKTSIITRFMYDTFDITYQATIGIDFLSKTMYLEDRTVRLQLW 60
Query: 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123
DTAGQERFRSLIPSYIRDSSVA+VVYD+ ++ SF NT KWI++VR ERG++V+I+LVGNK
Sbjct: 61 DTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVIMLVGNK 120
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEE 183
TDL +KRQVSIEEGEAK++E ++MF ETSAKAGFNIK LFRK+A+ALPG+++ S TK +
Sbjct: 121 TDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGIDSNSMTKNQH 180
Query: 184 MVDVNLRSTTGNASQSQSQSSGCS 207
+ + T G + CS
Sbjct: 181 EIISEVDITDGGKPALKEGDGFCS 204
>sp|P17608|RYH1_SCHPO GTP-binding protein ryh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ryh1 PE=1 SV=1
Length = 201
Score = 300 bits (767), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 142/203 (69%), Positives = 168/203 (82%), Gaps = 9/203 (4%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+L K+KLVFLG+QSVGKTS+ITRFMYD+FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT
Sbjct: 8 SLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 67
Query: 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
AGQERFRSLIPSYIRDSSVA++VYD+ + SF+NT KWI++VR ERG DVIIVLVGNKTD
Sbjct: 68 AGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTD 127
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMV 185
L +KRQV+ EEGE K++EL +M +ETSAKAG N+K LFRKIA LPGME + T+ +M+
Sbjct: 128 LADKRQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQMLPGMENV-ETQSTQMI 186
Query: 186 DVNLRSTTGNASQSQSQSSGCSC 208
DV++ Q S C+C
Sbjct: 187 DVSI--------QPNENESSCNC 201
>sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2
PE=2 SV=1
Length = 205
Score = 292 bits (748), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 138/169 (81%), Positives = 156/169 (92%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 6 NPLKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 65
Query: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQERFRSLIPSYIRDS+VAVVVYD+ + SF TSKWID+VRTERGSDVII+LVGNKT
Sbjct: 66 TAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 125
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM 173
DL +KRQV+ +EGE K++ELNVMFIETSAKAG+N+K LFR+IA ALPG+
Sbjct: 126 DLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALPGI 174
>sp|Q9H0N0|RAB6C_HUMAN Ras-related protein Rab-6C OS=Homo sapiens GN=RAB6C PE=1 SV=2
Length = 254
Score = 282 bits (722), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 138/205 (67%), Positives = 163/205 (79%), Gaps = 6/205 (2%)
Query: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
+ L K+KLVFLG+QSV KTS+ITRF YD FDNTYQA IGIDFLSKTMYLED T+ L+LWD
Sbjct: 9 NPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLWD 68
Query: 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
TAGQER RSLIP YIRDS+ AVVVYD+ + SF T+KWID+VRTERGSDVII LVGN+T
Sbjct: 69 TAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNRT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEM 184
DL +KRQVS+EEGE K++ LNV FIET AKAG+N+K LFR++AAALPGME+ +E+M
Sbjct: 129 DLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMESTQDGSREDM 188
Query: 185 VDVNLRSTTGNASQSQSQS-SGCSC 208
D+ L Q Q+ S GCSC
Sbjct: 189 SDIKLEK-----PQEQTVSEGGCSC 208
>sp|Q5JT25|RAB41_HUMAN Ras-related protein Rab-41 OS=Homo sapiens GN=RAB41 PE=2 SV=2
Length = 222
Score = 250 bits (639), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 124/194 (63%), Positives = 152/194 (78%), Gaps = 3/194 (1%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+L K KL+FLG+QSVGKTSII+RFMY+ F QAT+GIDFLSKTMYLED+ V+LQLWDT
Sbjct: 28 SLCKSKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDT 87
Query: 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
AGQERF SLIPSYIRDS++AVVVYD+ + SF T KW++ VR ERG DV+I+L+GNK D
Sbjct: 88 AGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKID 147
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMV 185
L KRQV+ E+GE KSR LNVMFIETSAK G+N+K LFR++A+AL T S +E V
Sbjct: 148 LDNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASALLSTRT-SPPPKEGTV 206
Query: 186 DVNLRS--TTGNAS 197
++ L S +GN S
Sbjct: 207 EIELESFEESGNRS 220
>sp|Q99260|YPT6_YEAST GTP-binding protein YPT6 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT6 PE=1 SV=1
Length = 215
Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/209 (56%), Positives = 156/209 (74%), Gaps = 6/209 (2%)
Query: 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
+L KYK+VFLG+Q VGKTS+ITRFMYD FD+ YQATIGIDFLSKTMYL+D+T+RLQLWDT
Sbjct: 7 SLTKYKIVFLGEQGVGKTSLITRFMYDTFDDHYQATIGIDFLSKTMYLDDKTIRLQLWDT 66
Query: 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKT 124
AGQERFRSLIPSYIRDS VA++VYD+ R+SF KWI++V+ ERG + VI+ +VGNK+
Sbjct: 67 AGQERFRSLIPSYIRDSRVAIIVYDITKRKSFEYIDKWIEDVKNERGDENVILCIVGNKS 126
Query: 125 DLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKPLFRKIAAALPGMETLSST---- 179
DL ++RQ+S EEGE K++ L +F+ETS KAG+N+K LF+KIA +LP + ST
Sbjct: 127 DLSDERQISTEEGEKKAKLLGAKIFMETSTKAGYNVKALFKKIAKSLPEFQNSESTPLDS 186
Query: 180 KQEEMVDVNLRSTTGNASQSQSQSSGCSC 208
+ + N ++ + + S C C
Sbjct: 187 ENANSANQNKPGVIDISTAEEQEQSACQC 215
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 115/176 (65%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 15 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 74
Query: 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123
DTAGQER+ SL P Y R + A+VVYD+ ++++F W+ E++ + ++I L GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSST 179
DL KR V EE +A + + +++F+ETSAK N+ LF IA LP E S++
Sbjct: 135 ADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQSTS 190
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 160 bits (405), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 123/204 (60%), Gaps = 8/204 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LG+ +VGK+SI+ RF+ + F + TIG FL++ + + + TV+ ++WDTAGQER
Sbjct: 9 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 68
Query: 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-- 128
F SL P Y R++ A+VVYDV QSF+ W+ E+ + D+II LVGNK D+++
Sbjct: 69 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 128
Query: 129 -KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP---GMETLSSTKQEEM 184
+R+V+ EEGE + E ++F ETSAK G N+ +F I +P E S++ + E
Sbjct: 129 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLKTAEEQNSASNERE- 187
Query: 185 VDVNLRSTTGNASQSQSQSSGCSC 208
N R A+ S +S CSC
Sbjct: 188 -SNNQRVDLNAANDGTSANSACSC 210
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 159 bits (403), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 112/171 (65%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 15 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 74
Query: 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123
DTAGQER+ SL P Y R + A+VVYD+ ++++F W+ E++ + ++I L GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
DL KR V EE +A + + +++F+ETSAK N+ LF IA LP E
Sbjct: 135 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 159 bits (403), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 112/171 (65%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 15 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 74
Query: 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123
DTAGQER+ SL P Y R + A+VVYD+ ++++F W+ E++ + ++I L GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
DL KR V EE +A + + +++F+ETSAK N+ LF IA LP E
Sbjct: 135 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 159 bits (403), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 112/171 (65%)
Query: 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
S + ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++++ L+D TV+ ++W
Sbjct: 15 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 74
Query: 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123
DTAGQER+ SL P Y R + A+VVYD+ ++++F W+ E++ + ++I L GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
DL KR V EE +A + + +++F+ETSAK N+ LF IA LP E
Sbjct: 135 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 185
>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1
SV=1
Length = 202
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 67
+ KLV LGD VGK+ I+ RF+ +FD T + T+G FLS+T+ L+D T V+ ++WDTAG
Sbjct: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
Query: 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
QER+ +L P Y R + VAV+VYD+ S +SF W+ E++ D+++ LVGNK DL
Sbjct: 93 QERYSALAPLYYRGAGVAVIVYDITSPESFKKAQYWVKELQKHGSPDIVMALVGNKADLH 152
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 171
EKR+V E+G + + + FIETSAK NI LF +I LP
Sbjct: 153 EKREVPTEDGMELAEKNGMFFIETSAKTADNINQLFEEIGKRLP 196
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 113/173 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A+VVYD+ + +F W+ E++ + +++I L GNK DL
Sbjct: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSST 179
KR V +E +A + + +++F+ETSAK N+ +F IA LP E ++T
Sbjct: 139 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAT 191
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 113/173 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A+VVYD+ + +F W+ E++ + +++I L GNK DL
Sbjct: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSST 179
KR V +E +A + + +++F+ETSAK N+ +F IA LP E ++T
Sbjct: 139 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAT 191
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 158 bits (399), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 110/168 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A+VVYD+ + +F W+ E++ + +++I L GNK DL
Sbjct: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
KR V +E +A + + +++F+ETSAK N+ +F IA LP E
Sbjct: 139 ASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 157 bits (397), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 110/168 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A+VVYD+ + +F W+ E++ + +++I L GNK DL
Sbjct: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
KR V +E +A + + +++F+ETSAK N+ +F IA LP E
Sbjct: 139 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 157 bits (397), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 110/168 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A+VVYD+ + +F W+ E++ + +++I L GNK DL
Sbjct: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
KR V +E +A + + +++F+ETSAK N+ +F IA LP E
Sbjct: 139 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 111/168 (66%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A+VVYD+ + +SF W+ E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
KR V +E ++ + + +++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 111/168 (66%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A+VVYD+ + +SF W+ E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
KR V +E ++ + + +++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 111/168 (66%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A+VVYD+ + +SF W+ E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
KR V +E ++ + + +++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 111/168 (66%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A+VVYD+ + +SF W+ E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
KR V +E ++ + + +++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 157 bits (396), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 111/168 (66%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A+VVYD+ + +SF W+ E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
KR V +E ++ + + +++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 157 bits (396), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 111/168 (66%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 18 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 77
Query: 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A+VVYD+ + +SF W+ E++ + +++I L GNK DL
Sbjct: 78 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 137
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
KR V +E ++ + + +++F+ETSAK N+ +F IA LP E
Sbjct: 138 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNE 185
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 157 bits (396), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 110/161 (68%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LGD GK+S++ RF+ D+F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
Query: 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
+ SL P Y R ++ A++V+D+ ++ SF KW+ E++ + ++++ L GNK DL++ R
Sbjct: 72 YHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDAR 131
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 171
+VS EE E ++E ++ F+ETSAK N+K +F +IA LP
Sbjct: 132 KVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLP 172
>sp|Q54DA7|RAB4_DICDI Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3
SV=1
Length = 205
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 127/199 (63%), Gaps = 3/199 (1%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
K + +G QSVGK+ ++ RF+ +KF + TIG+DF S+ + ++ + V+LQ+WDTAGQER
Sbjct: 9 KFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQER 68
Query: 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
FRS++ SY R S+ +VYDV +R+S+ + + W+ +V++ DV I+LVGNK DL E+R
Sbjct: 69 FRSVVISYYRGSAGVALVYDVTNRESYNHITNWLSDVKSLASPDVTIILVGNKADLTEQR 128
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQE-EMVDVNL 189
+V+ E ++E ++F+ETSA G ++ +F K + M + S + E + V +
Sbjct: 129 EVTFLEASRIAQENGLLFMETSALTGEGVEEMFLKCTRTI--MTKIDSGEVNLEHLGVQI 186
Query: 190 RSTTGNASQSQSQSSGCSC 208
S +GN ++ SS CSC
Sbjct: 187 SSDSGNVTKKPGDSSNCSC 205
>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Length = 216
Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 110/168 (65%)
Query: 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
+ ++KLV LG+ +VGK+S++ RF+ +F ++TIG FL++T+ L+D TV+ ++WDTA
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
GQER+ SL P Y R + A+VVYD+ + +F+ W+ E++ + +++I L GNK DL
Sbjct: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADL 138
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGME 174
KR V ++ + + + +++F+ETSAK N+ +F IA LP E
Sbjct: 139 ATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 154 bits (388), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 110/161 (68%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LGD GK+S++ RF+ D+F ++TIG F S+T+ + D TV+ ++WDTAGQER
Sbjct: 12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 71
Query: 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
+ SL P Y R ++ A++V+DV ++ SF KW+ E++ + ++++ L GNK+DL++ R
Sbjct: 72 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 131
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 171
+V+ E+ + ++E + F+ETSAK N+K +F +IA LP
Sbjct: 132 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 172
>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A
PE=3 SV=1
Length = 201
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 108/167 (64%)
Query: 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
++KLV LG+ +VGK+S++ RF+ F + ++TIG FL++T+ L D TV+ ++WDTAGQ
Sbjct: 9 QFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLNDTTVKFEIWDTAGQ 68
Query: 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
ER+ +L P Y R + A+VVYD+ S SF KW+ E++ + +++I L GNK DL
Sbjct: 69 ERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKLDLAA 128
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMET 175
KR+V E + + E ++F+ETSAK N+ LF +IA LP T
Sbjct: 129 KRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKTPT 175
>sp|Q86YS6|RAB43_HUMAN Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1
Length = 212
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD SVGKT ++ RF F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 19 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 78
Query: 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++ A++ YD+ R SFL+ WI++VR GS+++ +L+GNK+DL E
Sbjct: 79 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 138
Query: 130 RQVSIEEGEAKSRELNVMF-IETSAKAGFNIKPLFRKIAAALPGME--TLSSTKQEEMVD 186
R+VS+ E ++ + +++ IETSAK N++ F ++A L L S K + +
Sbjct: 139 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGPLFSEKSPDHIQ 198
Query: 187 VNLRSTTGNASQSQSQSSGCSC 208
+N S+ + GC C
Sbjct: 199 LN--------SKDIGEGWGCGC 212
>sp|P36586|YPT5_SCHPO GTP-binding protein ypt5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt5 PE=1 SV=1
Length = 211
Score = 151 bits (382), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 126/201 (62%), Gaps = 8/201 (3%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQE 69
KLV LGD +VGK+S++ RF+ D+FD+ ++TIG FL++T+ +++ T V+L++WDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-E 128
R++SL P Y R+++ A+VVYD+ S WI E++ + ++I L GNK DL E
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQE 135
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVN 188
+R V + EA + E N++F ETSAK N+ LF IA LP + L+ + VN
Sbjct: 136 RRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLPLEDKLNQARGAVNRGVN 195
Query: 189 LRSTTGNASQSQSQSSG-CSC 208
L + ++ +Q SG CSC
Sbjct: 196 L-----SEARPAAQPSGSCSC 211
>sp|Q40723|RLGP2_ORYSJ Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2
PE=2 SV=2
Length = 217
Score = 150 bits (378), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 113/164 (68%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD VGK++I++RF + F ++TIG++F +K++ +E +T++ Q+WDTAGQE
Sbjct: 13 FKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQE 72
Query: 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
R+R++ +Y R + A++VYD+ RQSF N +W+ E+R S ++I++VGNK+DL+
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHL 132
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM 173
R VS +EG+A + + + F+ETSA N++ F+ I + G+
Sbjct: 133 RAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGI 176
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 150 bits (378), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 103/161 (63%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
KLV LGD GK+S++ RF+ +F ++TIG F S T+ + + TV+ ++WDTAGQER
Sbjct: 12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQER 71
Query: 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
+ SL P Y R ++ A++VYD+ S SF KW+ E++ + ++++ L GNK DL ++R
Sbjct: 72 YHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRR 131
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 171
+V+ EE + E + F+ETSAK N+ +F +IA LP
Sbjct: 132 KVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLP 172
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 117/199 (58%), Gaps = 1/199 (0%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KL+ +GD SVGK+ + RF D + ++Y +TIG+DF +T+ +E +TV+LQ+WDTAGQE
Sbjct: 9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQE 68
Query: 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R + ++VYD+ +SF N +W+DE+ V +LVGNK DL E
Sbjct: 69 RFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAEN 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNL 189
R V +A ++E+ + F+ETSAK N++ F ++AA+ + S E N+
Sbjct: 129 RAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPS-NV 187
Query: 190 RSTTGNASQSQSQSSGCSC 208
G Q + Q S C
Sbjct: 188 VQMKGRPIQQEQQKSSRCC 206
>sp|Q53B90|RAB43_RAT Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1
Length = 210
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 125/202 (61%), Gaps = 11/202 (5%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD SVGKT ++ RF F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76
Query: 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++ A++ YD++ R +FL+ WI++VR GS+++ +L+GNK+DL +
Sbjct: 77 RFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADL 136
Query: 130 RQVSIEEGEAKSRELNVMF-IETSAKAGFNIKPLFRKIAAALPGME--TLSSTKQEEMVD 186
R+V + E ++ + +++ IETSAK N++ F ++A L + S K + +
Sbjct: 137 REVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELIMRHGGPMFSEKNTDHIQ 196
Query: 187 VNLRSTTGNASQSQSQSSGCSC 208
++ S+ ++S GC C
Sbjct: 197 LD--------SKDIAESWGCGC 210
>sp|Q8CG50|RAB43_MOUSE Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1
Length = 210
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 125/202 (61%), Gaps = 11/202 (5%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+KLV +GD SVGKT ++ RF F +TIG+DF KT+ ++ + V+LQ+WDTAGQE
Sbjct: 17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 76
Query: 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ SY R ++ A++ YD++ R +FL+ WI++VR GS+++ +L+GNK+DL +
Sbjct: 77 RFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADF 136
Query: 130 RQVSIEEGEAKSRELNVMF-IETSAKAGFNIKPLFRKIAAALPGME--TLSSTKQEEMVD 186
R+V + E ++ + +++ IETSAK N++ F ++A L + S K + +
Sbjct: 137 REVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATELIMRHGGPMFSEKNTDHIQ 196
Query: 187 VNLRSTTGNASQSQSQSSGCSC 208
++ S+ ++S GC C
Sbjct: 197 LD--------SKDIAESWGCGC 210
>sp|P19892|RAA5E_ARATH Ras-related protein RABA5e OS=Arabidopsis thaliana GN=RABA5E PE=2
SV=1
Length = 218
Score = 147 bits (371), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 127/202 (62%), Gaps = 3/202 (1%)
Query: 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
+K+V +GD +VGK+++++R+ ++F +ATIG++F +++M +E + V+ Q+WDTAGQE
Sbjct: 13 FKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQE 72
Query: 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
RFR++ +Y R + A+VVYD+ R +F + +W+DE++ + V +LVGNK DL
Sbjct: 73 RFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENI 132
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG---METLSSTKQEEMVD 186
R VS+EEG+A + E + F+ETSA N+K F + + + L+S ++ +
Sbjct: 133 RAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKDELT 192
Query: 187 VNLRSTTGNASQSQSQSSGCSC 208
VN S + + + QSSG SC
Sbjct: 193 VNRVSLVKDDNSASKQSSGFSC 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,581,476
Number of Sequences: 539616
Number of extensions: 2334765
Number of successful extensions: 10345
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 328
Number of HSP's that attempted gapping in prelim test: 8438
Number of HSP's gapped (non-prelim): 1295
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)