Query 028507
Match_columns 208
No_of_seqs 131 out of 1747
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 2E-43 4.3E-48 245.8 20.3 172 6-177 6-178 (205)
2 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.5E-42 3.3E-47 240.6 20.6 201 6-208 19-221 (221)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 1E-40 2.2E-45 231.5 20.8 172 7-178 3-174 (200)
4 KOG0078 GTP-binding protein SE 100.0 1.1E-39 2.5E-44 230.2 21.2 172 1-172 4-175 (207)
5 KOG0080 GTPase Rab18, small G 100.0 1.2E-39 2.6E-44 219.3 18.9 178 1-178 1-181 (209)
6 KOG0098 GTPase Rab2, small G p 100.0 4.3E-39 9.2E-44 221.8 18.0 168 6-173 3-170 (216)
7 cd04120 Rab12 Rab12 subfamily. 100.0 5.2E-37 1.1E-41 224.2 23.9 163 10-172 1-164 (202)
8 KOG0079 GTP-binding protein H- 100.0 1.5E-38 3.3E-43 211.2 12.9 184 8-192 7-190 (198)
9 KOG0394 Ras-related GTPase [Ge 100.0 1.3E-37 2.7E-42 214.2 17.6 203 1-208 1-210 (210)
10 cd04121 Rab40 Rab40 subfamily. 100.0 1.9E-36 4E-41 219.4 22.4 167 8-175 5-171 (189)
11 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.9E-36 4.1E-41 222.4 22.2 165 10-174 1-171 (201)
12 PLN03110 Rab GTPase; Provision 100.0 9.5E-36 2.1E-40 220.6 24.2 167 7-173 10-176 (216)
13 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.8E-36 3.8E-41 213.2 17.6 169 5-173 10-178 (222)
14 cd04110 Rab35 Rab35 subfamily. 100.0 2.3E-35 5E-40 216.2 23.1 183 8-191 5-187 (199)
15 cd04126 Rab20 Rab20 subfamily. 100.0 2.6E-35 5.7E-40 217.5 20.6 165 10-179 1-198 (220)
16 cd04122 Rab14 Rab14 subfamily. 100.0 8.4E-35 1.8E-39 207.5 21.9 163 9-171 2-164 (166)
17 cd04112 Rab26 Rab26 subfamily. 100.0 1E-34 2.2E-39 211.5 22.5 165 10-174 1-166 (191)
18 KOG0086 GTPase Rab4, small G p 100.0 1.6E-35 3.4E-40 197.9 16.4 183 3-185 3-186 (214)
19 cd04111 Rab39 Rab39 subfamily. 100.0 1.6E-34 3.5E-39 213.2 23.1 165 9-173 2-168 (211)
20 cd04144 Ras2 Ras2 subfamily. 100.0 6.5E-35 1.4E-39 212.4 20.7 185 11-208 1-188 (190)
21 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.9E-34 4.1E-39 214.1 23.5 166 5-172 9-189 (232)
22 cd04109 Rab28 Rab28 subfamily. 100.0 2.6E-34 5.7E-39 213.0 23.3 164 10-173 1-168 (215)
23 KOG0095 GTPase Rab30, small G 100.0 1.5E-35 3.3E-40 197.3 14.6 163 9-171 7-169 (213)
24 cd04133 Rop_like Rop subfamily 100.0 1.7E-34 3.6E-39 207.0 20.8 160 10-171 2-173 (176)
25 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.4E-34 5.2E-39 207.4 21.1 162 7-170 3-179 (182)
26 cd04125 RabA_like RabA-like su 100.0 4.2E-34 9.1E-39 207.8 22.6 163 10-172 1-163 (188)
27 cd01865 Rab3 Rab3 subfamily. 100.0 3.7E-34 8.1E-39 203.9 21.9 162 10-171 2-163 (165)
28 cd04117 Rab15 Rab15 subfamily. 100.0 4.6E-34 9.9E-39 202.7 21.9 160 10-169 1-160 (161)
29 cd01875 RhoG RhoG subfamily. 100.0 4E-34 8.7E-39 208.2 22.1 163 7-171 1-177 (191)
30 cd01867 Rab8_Rab10_Rab13_like 100.0 4.9E-34 1.1E-38 203.7 21.9 164 8-171 2-165 (167)
31 KOG0093 GTPase Rab3, small G p 100.0 2.8E-35 6.2E-40 195.4 14.0 168 8-175 20-187 (193)
32 PLN03108 Rab family protein; P 100.0 1.3E-33 2.7E-38 208.4 24.2 165 8-172 5-169 (210)
33 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.9E-34 1.1E-38 204.5 21.0 163 9-172 2-165 (172)
34 PTZ00369 Ras-like protein; Pro 100.0 5E-34 1.1E-38 207.5 20.7 165 7-172 3-168 (189)
35 cd04131 Rnd Rnd subfamily. Th 100.0 6E-34 1.3E-38 204.9 20.7 160 9-170 1-175 (178)
36 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.2E-33 2.6E-38 201.5 21.7 163 9-171 2-164 (166)
37 PF00071 Ras: Ras family; Int 100.0 1.2E-33 2.7E-38 200.6 21.5 160 11-170 1-160 (162)
38 PLN03118 Rab family protein; P 100.0 3.5E-33 7.6E-38 206.5 23.9 168 7-175 12-181 (211)
39 cd04119 RJL RJL (RabJ-Like) su 100.0 2E-33 4.3E-38 200.4 21.7 162 10-171 1-167 (168)
40 cd01864 Rab19 Rab19 subfamily. 100.0 2.9E-33 6.4E-38 199.3 22.3 163 8-170 2-165 (165)
41 cd04127 Rab27A Rab27a subfamil 100.0 1.5E-33 3.3E-38 203.5 20.9 164 8-171 3-177 (180)
42 KOG0091 GTPase Rab39, small G 100.0 1.7E-34 3.7E-39 195.0 14.6 164 8-171 7-173 (213)
43 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.5E-33 3.3E-38 203.5 20.7 165 10-175 1-170 (182)
44 cd04113 Rab4 Rab4 subfamily. 100.0 3E-33 6.5E-38 198.4 21.7 161 10-170 1-161 (161)
45 cd01868 Rab11_like Rab11-like. 100.0 4.5E-33 9.8E-38 198.3 22.4 163 8-170 2-164 (165)
46 cd04136 Rap_like Rap-like subf 100.0 2.4E-33 5.3E-38 199.2 20.4 161 9-170 1-162 (163)
47 cd01866 Rab2 Rab2 subfamily. 100.0 4.8E-33 1E-37 198.8 22.0 163 9-171 4-166 (168)
48 cd04118 Rab24 Rab24 subfamily. 100.0 7.7E-33 1.7E-37 202.0 23.0 164 10-174 1-169 (193)
49 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 7.7E-33 1.7E-37 204.6 22.9 162 9-172 1-177 (222)
50 cd04175 Rap1 Rap1 subgroup. T 100.0 4.3E-33 9.4E-38 198.2 20.4 162 9-171 1-163 (164)
51 PLN03071 GTP-binding nuclear p 100.0 6.1E-33 1.3E-37 205.8 21.8 165 7-174 11-175 (219)
52 cd04106 Rab23_lke Rab23-like s 100.0 8.5E-33 1.8E-37 196.3 21.2 159 10-169 1-161 (162)
53 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.2E-32 2.5E-37 197.0 21.4 163 11-173 2-167 (170)
54 cd04132 Rho4_like Rho4-like su 100.0 8.4E-33 1.8E-37 200.8 20.9 166 10-177 1-173 (187)
55 smart00175 RAB Rab subfamily o 100.0 1.7E-32 3.6E-37 195.0 21.7 162 10-171 1-162 (164)
56 cd00877 Ran Ran (Ras-related n 100.0 1.2E-32 2.6E-37 196.3 20.9 161 10-173 1-161 (166)
57 cd01861 Rab6 Rab6 subfamily. 100.0 2E-32 4.4E-37 194.1 21.7 161 10-170 1-161 (161)
58 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.2E-32 2.6E-37 197.8 20.7 159 10-170 2-174 (175)
59 cd04176 Rap2 Rap2 subgroup. T 100.0 2.1E-32 4.5E-37 194.5 20.6 161 9-170 1-162 (163)
60 cd04140 ARHI_like ARHI subfami 100.0 2.6E-32 5.7E-37 194.4 20.5 160 9-169 1-163 (165)
61 cd01860 Rab5_related Rab5-rela 100.0 6.1E-32 1.3E-36 192.0 22.2 162 9-170 1-162 (163)
62 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.4E-32 9.5E-37 194.2 21.5 163 8-170 1-168 (170)
63 cd04116 Rab9 Rab9 subfamily. 100.0 6.8E-32 1.5E-36 193.1 22.3 163 7-170 3-170 (170)
64 cd01871 Rac1_like Rac1-like su 100.0 4.5E-32 9.7E-37 194.7 21.0 159 9-169 1-173 (174)
65 smart00173 RAS Ras subfamily o 100.0 3.3E-32 7.2E-37 193.6 20.2 161 10-171 1-162 (164)
66 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.6E-32 1.2E-36 192.3 21.1 162 8-170 1-163 (164)
67 KOG0097 GTPase Rab14, small G 100.0 2.7E-32 5.9E-37 180.4 17.5 202 7-208 9-215 (215)
68 cd04138 H_N_K_Ras_like H-Ras/N 100.0 7.3E-32 1.6E-36 191.2 20.8 160 9-170 1-161 (162)
69 KOG0088 GTPase Rab21, small G 100.0 3.3E-33 7.2E-38 187.8 12.0 164 7-170 11-174 (218)
70 cd04142 RRP22 RRP22 subfamily. 100.0 9.2E-32 2E-36 196.5 20.7 165 10-174 1-177 (198)
71 cd04134 Rho3 Rho3 subfamily. 100.0 1.1E-31 2.4E-36 195.2 21.0 160 10-171 1-174 (189)
72 cd04124 RabL2 RabL2 subfamily. 100.0 1.3E-31 2.9E-36 190.0 20.9 159 10-172 1-159 (161)
73 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.5E-31 5.3E-36 189.1 21.5 160 10-170 1-163 (164)
74 cd04123 Rab21 Rab21 subfamily. 100.0 4.1E-31 8.9E-36 187.4 22.0 161 10-170 1-161 (162)
75 smart00176 RAN Ran (Ras-relate 100.0 2.8E-31 6.2E-36 193.7 20.3 156 15-173 1-156 (200)
76 cd04143 Rhes_like Rhes_like su 100.0 4.6E-31 1E-35 198.5 22.0 161 10-171 1-171 (247)
77 cd01873 RhoBTB RhoBTB subfamil 100.0 3.2E-31 7E-36 193.0 20.1 158 9-169 2-194 (195)
78 KOG0081 GTPase Rab27, small G 100.0 2E-33 4.2E-38 189.1 7.7 174 1-174 1-184 (219)
79 cd04177 RSR1 RSR1 subgroup. R 100.0 8.1E-31 1.7E-35 187.3 20.8 161 9-170 1-163 (168)
80 cd01863 Rab18 Rab18 subfamily. 100.0 1.5E-30 3.3E-35 184.5 21.9 160 10-170 1-161 (161)
81 cd01862 Rab7 Rab7 subfamily. 100.0 1.3E-30 2.8E-35 186.7 21.6 164 10-173 1-169 (172)
82 cd04114 Rab30 Rab30 subfamily. 100.0 3.4E-30 7.3E-35 184.1 22.8 163 8-170 6-168 (169)
83 cd04103 Centaurin_gamma Centau 100.0 1.1E-30 2.4E-35 184.5 19.7 153 10-169 1-157 (158)
84 cd00154 Rab Rab family. Rab G 100.0 2E-30 4.4E-35 182.8 20.8 159 10-168 1-159 (159)
85 cd04146 RERG_RasL11_like RERG/ 100.0 7.3E-31 1.6E-35 186.9 18.7 160 11-171 1-164 (165)
86 smart00174 RHO Rho (Ras homolo 100.0 1.2E-30 2.6E-35 187.4 19.8 158 12-171 1-172 (174)
87 KOG0083 GTPase Rab26/Rab37, sm 100.0 4.6E-33 1E-37 182.1 6.4 170 13-182 1-171 (192)
88 cd04148 RGK RGK subfamily. Th 100.0 2.2E-30 4.7E-35 192.5 20.4 160 10-171 1-163 (221)
89 cd04135 Tc10 TC10 subfamily. 100.0 3.7E-30 8E-35 184.8 20.6 159 10-170 1-173 (174)
90 cd01892 Miro2 Miro2 subfamily. 100.0 1.4E-30 3E-35 186.2 18.1 162 8-171 3-166 (169)
91 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.8E-30 1E-34 184.1 20.7 157 10-168 1-171 (173)
92 cd00876 Ras Ras family. The R 100.0 1.4E-29 3E-34 179.1 20.2 159 11-170 1-160 (160)
93 cd04139 RalA_RalB RalA/RalB su 100.0 1.8E-29 4E-34 179.3 20.8 161 10-171 1-162 (164)
94 cd04147 Ras_dva Ras-dva subfam 100.0 2.1E-29 4.6E-34 184.5 20.9 164 11-175 1-167 (198)
95 KOG0395 Ras-related GTPase [Ge 100.0 1E-29 2.2E-34 184.2 18.0 164 8-172 2-166 (196)
96 cd04137 RheB Rheb (Ras Homolog 100.0 5.1E-29 1.1E-33 179.9 20.5 164 10-174 2-166 (180)
97 cd04149 Arf6 Arf6 subfamily. 100.0 1.7E-29 3.7E-34 180.3 17.4 155 7-168 7-167 (168)
98 PTZ00132 GTP-binding nuclear p 100.0 1.5E-28 3.3E-33 182.2 22.5 172 1-175 1-172 (215)
99 cd01870 RhoA_like RhoA-like su 100.0 1.2E-28 2.5E-33 177.1 21.0 159 10-170 2-174 (175)
100 cd04129 Rho2 Rho2 subfamily. 100.0 1.2E-28 2.7E-33 178.9 20.7 160 10-171 2-173 (187)
101 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 8E-30 1.7E-34 181.4 13.1 153 11-168 1-163 (164)
102 smart00177 ARF ARF-like small 100.0 2.3E-29 5.1E-34 180.8 15.1 157 7-170 11-173 (175)
103 PLN00223 ADP-ribosylation fact 100.0 1.3E-28 2.7E-33 177.8 18.9 159 7-172 15-179 (181)
104 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 5E-29 1.1E-33 180.4 16.4 161 8-171 2-170 (183)
105 cd04158 ARD1 ARD1 subfamily. 100.0 1.5E-28 3.3E-33 175.6 18.6 156 11-173 1-163 (169)
106 cd04102 RabL3 RabL3 (Rab-like3 100.0 3.2E-28 6.8E-33 177.6 20.3 148 10-157 1-176 (202)
107 cd00157 Rho Rho (Ras homology) 100.0 3.3E-28 7.1E-33 174.1 20.1 157 10-168 1-170 (171)
108 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4.1E-29 8.8E-34 176.9 14.1 152 10-168 1-158 (159)
109 cd04154 Arl2 Arl2 subfamily. 100.0 3.7E-28 8.1E-33 174.3 17.8 155 7-168 12-172 (173)
110 PTZ00099 rab6; Provisional 100.0 1.2E-27 2.5E-32 171.6 19.4 145 32-176 3-147 (176)
111 PTZ00133 ADP-ribosylation fact 100.0 6.7E-28 1.5E-32 174.2 18.2 159 7-172 15-179 (182)
112 cd01893 Miro1 Miro1 subfamily. 100.0 1.3E-27 2.8E-32 170.4 19.0 159 10-171 1-164 (166)
113 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 3.7E-27 8E-32 169.3 17.5 154 8-168 14-173 (174)
114 KOG0393 Ras-related small GTPa 100.0 6.1E-28 1.3E-32 171.5 12.8 167 7-175 2-183 (198)
115 KOG4252 GTP-binding protein [S 100.0 1E-29 2.2E-34 174.5 3.5 169 4-173 15-183 (246)
116 cd04157 Arl6 Arl6 subfamily. 100.0 1.6E-27 3.5E-32 169.1 14.8 152 11-168 1-161 (162)
117 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.6E-27 7.8E-32 168.2 15.9 151 11-168 1-166 (167)
118 cd00879 Sar1 Sar1 subfamily. 100.0 1.3E-26 2.9E-31 168.6 18.8 157 7-170 17-190 (190)
119 cd04156 ARLTS1 ARLTS1 subfamil 100.0 4.7E-27 1E-31 166.4 15.4 152 11-168 1-159 (160)
120 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.3E-26 2.8E-31 165.3 16.7 152 11-168 1-166 (167)
121 PLN00023 GTP-binding protein; 100.0 1.9E-26 4.1E-31 176.2 18.3 141 6-146 18-189 (334)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 9.4E-27 2E-31 164.6 14.8 151 11-168 1-157 (158)
123 cd04151 Arl1 Arl1 subfamily. 99.9 2.3E-26 5E-31 162.6 16.5 151 11-168 1-157 (158)
124 PF00025 Arf: ADP-ribosylation 99.9 1.2E-25 2.5E-30 161.4 18.0 157 7-170 12-175 (175)
125 smart00178 SAR Sar1p-like memb 99.9 1.6E-25 3.4E-30 162.2 18.4 156 7-169 15-183 (184)
126 cd01897 NOG NOG1 is a nucleola 99.9 1.7E-25 3.7E-30 159.6 16.3 156 10-170 1-167 (168)
127 PRK12299 obgE GTPase CgtA; Rev 99.9 1.7E-25 3.7E-30 174.5 17.5 162 10-172 159-329 (335)
128 cd04159 Arl10_like Arl10-like 99.9 3.1E-25 6.6E-30 156.4 16.9 152 11-168 1-158 (159)
129 cd01890 LepA LepA subfamily. 99.9 4.8E-25 1E-29 158.9 17.0 155 11-171 2-177 (179)
130 cd01898 Obg Obg subfamily. Th 99.9 3E-25 6.6E-30 158.6 15.7 158 11-170 2-170 (170)
131 TIGR00231 small_GTP small GTP- 99.9 1.3E-24 2.8E-29 152.9 18.3 158 9-167 1-160 (161)
132 cd01878 HflX HflX subfamily. 99.9 7E-25 1.5E-29 161.3 15.8 156 8-170 40-204 (204)
133 cd04155 Arl3 Arl3 subfamily. 99.9 4.8E-24 1E-28 152.9 18.3 155 7-168 12-172 (173)
134 cd04171 SelB SelB subfamily. 99.9 2.1E-24 4.5E-29 153.2 16.1 152 10-168 1-163 (164)
135 KOG3883 Ras family small GTPas 99.9 8.5E-24 1.8E-28 141.7 17.2 175 8-182 8-186 (198)
136 COG1100 GTPase SAR1 and relate 99.9 1.3E-23 2.9E-28 156.1 18.5 166 7-172 3-186 (219)
137 KOG0070 GTP-binding ADP-ribosy 99.9 2.3E-24 4.9E-29 149.7 13.1 160 6-172 14-179 (181)
138 KOG0073 GTP-binding ADP-ribosy 99.9 1.4E-23 3E-28 142.3 16.3 159 7-172 14-179 (185)
139 PRK04213 GTP-binding protein; 99.9 1.5E-24 3.4E-29 159.1 12.7 162 1-175 1-196 (201)
140 TIGR02528 EutP ethanolamine ut 99.9 1.9E-24 4.1E-29 150.2 12.3 134 11-167 2-141 (142)
141 TIGR02729 Obg_CgtA Obg family 99.9 1.2E-23 2.5E-28 164.1 17.3 159 10-170 158-328 (329)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 8.9E-24 1.9E-28 150.7 14.9 158 11-172 2-167 (168)
143 cd01879 FeoB Ferrous iron tran 99.9 1.8E-23 3.9E-28 147.6 16.0 148 14-170 1-156 (158)
144 cd00882 Ras_like_GTPase Ras-li 99.9 4.5E-23 9.7E-28 143.8 17.7 153 14-167 1-156 (157)
145 PF02421 FeoB_N: Ferrous iron 99.9 2.7E-24 5.8E-29 149.3 11.2 148 10-166 1-156 (156)
146 TIGR03156 GTP_HflX GTP-binding 99.9 3.9E-23 8.4E-28 162.5 17.6 153 9-169 189-350 (351)
147 PRK03003 GTP-binding protein D 99.9 5.4E-24 1.2E-28 174.2 12.8 185 8-198 210-409 (472)
148 cd01891 TypA_BipA TypA (tyrosi 99.9 2.3E-23 4.9E-28 152.1 14.0 146 10-159 3-170 (194)
149 cd01881 Obg_like The Obg-like 99.9 2.7E-23 5.8E-28 149.2 13.4 155 14-169 1-175 (176)
150 TIGR00436 era GTP-binding prot 99.9 1.4E-22 2.9E-27 155.0 17.1 160 11-178 2-171 (270)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.7E-22 3.7E-27 142.2 16.1 146 10-170 2-156 (157)
152 PRK15494 era GTPase Era; Provi 99.9 3E-22 6.5E-27 157.3 18.7 163 7-179 50-224 (339)
153 PF08477 Miro: Miro-like prote 99.9 8.6E-23 1.9E-27 137.6 13.4 114 11-125 1-119 (119)
154 PRK12297 obgE GTPase CgtA; Rev 99.9 4E-22 8.7E-27 159.3 18.7 160 11-175 160-331 (424)
155 PRK12296 obgE GTPase CgtA; Rev 99.9 3E-22 6.6E-27 162.0 17.0 164 10-176 160-345 (500)
156 PRK05291 trmE tRNA modificatio 99.9 2.4E-22 5.1E-27 163.1 15.2 149 8-172 214-371 (449)
157 TIGR00450 mnmE_trmE_thdF tRNA 99.9 5.7E-22 1.2E-26 160.1 17.1 152 8-173 202-362 (442)
158 cd01889 SelB_euk SelB subfamil 99.9 2.7E-22 5.8E-27 146.2 13.6 158 10-171 1-186 (192)
159 KOG0075 GTP-binding ADP-ribosy 99.9 1.5E-22 3.2E-27 134.9 10.7 157 8-170 19-181 (186)
160 PRK15467 ethanolamine utilizat 99.9 4.7E-22 1E-26 140.4 14.1 144 11-176 3-152 (158)
161 cd00881 GTP_translation_factor 99.9 1E-21 2.2E-26 142.5 16.2 155 11-171 1-187 (189)
162 TIGR03594 GTPase_EngA ribosome 99.9 3E-22 6.5E-27 162.8 14.7 169 8-183 171-356 (429)
163 KOG1673 Ras GTPases [General f 99.9 2.3E-22 5.1E-27 135.2 11.1 170 5-175 16-190 (205)
164 cd01894 EngA1 EngA1 subfamily. 99.9 6.3E-22 1.4E-26 139.4 14.1 147 13-170 1-157 (157)
165 PRK12298 obgE GTPase CgtA; Rev 99.9 1.5E-21 3.2E-26 155.3 17.5 163 11-175 161-337 (390)
166 PRK03003 GTP-binding protein D 99.9 1.8E-21 3.8E-26 159.5 18.4 152 10-172 39-200 (472)
167 TIGR01393 lepA GTP-binding pro 99.9 1.3E-21 2.9E-26 163.1 17.9 158 10-173 4-182 (595)
168 PRK11058 GTPase HflX; Provisio 99.9 9.2E-22 2E-26 158.1 16.1 156 10-171 198-362 (426)
169 cd01888 eIF2_gamma eIF2-gamma 99.9 1.1E-21 2.4E-26 144.0 14.7 161 10-172 1-200 (203)
170 KOG0071 GTP-binding ADP-ribosy 99.9 2.3E-21 5E-26 128.2 14.4 158 7-171 15-178 (180)
171 TIGR00487 IF-2 translation ini 99.9 2.6E-21 5.5E-26 160.8 17.6 154 7-168 85-247 (587)
172 PRK00454 engB GTP-binding prot 99.9 2.4E-21 5.3E-26 141.5 15.5 160 6-172 21-195 (196)
173 cd01895 EngA2 EngA2 subfamily. 99.9 7.3E-21 1.6E-25 136.0 16.6 155 9-169 2-173 (174)
174 TIGR00475 selB selenocysteine- 99.9 4.1E-21 8.9E-26 160.1 17.4 157 10-175 1-170 (581)
175 cd04163 Era Era subfamily. Er 99.9 9.5E-21 2.1E-25 134.4 15.3 157 8-170 2-168 (168)
176 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.4E-21 3E-26 135.7 10.5 169 3-174 4-172 (216)
177 PRK00089 era GTPase Era; Revie 99.9 1.3E-20 2.8E-25 145.9 17.2 164 7-176 3-176 (292)
178 PF00009 GTP_EFTU: Elongation 99.9 2.7E-21 5.9E-26 140.4 12.5 160 8-171 2-187 (188)
179 cd04105 SR_beta Signal recogni 99.9 1.5E-20 3.3E-25 137.9 16.0 118 11-129 2-124 (203)
180 PRK05306 infB translation init 99.9 1.5E-20 3.2E-25 159.8 17.6 151 7-169 288-450 (787)
181 COG1159 Era GTPase [General fu 99.9 1.9E-20 4.2E-25 139.8 15.7 168 6-179 3-180 (298)
182 CHL00189 infB translation init 99.9 1.6E-20 3.6E-25 158.3 17.2 156 8-170 243-409 (742)
183 PRK09518 bifunctional cytidyla 99.9 7.1E-21 1.5E-25 162.6 14.9 180 8-195 449-645 (712)
184 TIGR00437 feoB ferrous iron tr 99.9 1.3E-20 2.9E-25 157.2 15.6 146 16-170 1-154 (591)
185 KOG0076 GTP-binding ADP-ribosy 99.9 2.7E-21 5.9E-26 132.5 9.3 161 7-173 15-189 (197)
186 PRK09554 feoB ferrous iron tra 99.9 3.4E-20 7.3E-25 158.2 18.1 155 7-170 1-167 (772)
187 PRK00093 GTP-binding protein D 99.9 2.9E-20 6.2E-25 151.5 17.0 148 10-170 2-161 (435)
188 TIGR03598 GTPase_YsxC ribosome 99.9 2.2E-20 4.8E-25 134.7 14.5 147 7-160 16-179 (179)
189 PRK00093 GTP-binding protein D 99.9 6.9E-21 1.5E-25 155.1 13.0 167 8-182 172-355 (435)
190 PRK05433 GTP-binding protein L 99.9 3.6E-20 7.9E-25 154.7 17.5 158 10-173 8-186 (600)
191 TIGR03594 GTPase_EngA ribosome 99.9 4.1E-20 8.8E-25 150.4 17.0 152 11-173 1-162 (429)
192 COG1160 Predicted GTPases [Gen 99.8 4.1E-20 8.9E-25 145.3 14.8 151 10-171 4-165 (444)
193 cd00880 Era_like Era (E. coli 99.8 4.4E-20 9.6E-25 129.8 13.3 152 14-170 1-163 (163)
194 COG1160 Predicted GTPases [Gen 99.8 8.1E-20 1.7E-24 143.6 14.3 183 8-196 177-376 (444)
195 PRK12317 elongation factor 1-a 99.8 7.7E-20 1.7E-24 148.3 14.1 155 6-163 3-197 (425)
196 cd01896 DRG The developmentall 99.8 7.7E-19 1.7E-23 131.3 18.0 152 11-171 2-226 (233)
197 COG2229 Predicted GTPase [Gene 99.8 3.6E-19 7.8E-24 123.7 14.7 157 5-169 6-176 (187)
198 TIGR00483 EF-1_alpha translati 99.8 1.7E-19 3.6E-24 146.3 15.1 154 6-162 4-198 (426)
199 PRK09518 bifunctional cytidyla 99.8 5.8E-19 1.2E-23 151.0 19.0 153 8-172 274-437 (712)
200 COG0486 ThdF Predicted GTPase 99.8 3.2E-19 6.9E-24 140.7 15.2 154 8-173 216-378 (454)
201 cd01884 EF_Tu EF-Tu subfamily. 99.8 6.8E-19 1.5E-23 128.0 15.2 146 8-159 1-171 (195)
202 TIGR03680 eif2g_arch translati 99.8 3E-19 6.4E-24 143.7 14.5 163 7-171 2-196 (406)
203 TIGR01394 TypA_BipA GTP-bindin 99.8 3.2E-19 6.9E-24 148.7 14.7 158 10-173 2-193 (594)
204 TIGR00491 aIF-2 translation in 99.8 7.1E-19 1.5E-23 146.1 16.6 156 8-170 3-215 (590)
205 KOG4423 GTP-binding protein-li 99.8 8.1E-22 1.8E-26 136.5 -0.8 167 6-172 22-195 (229)
206 COG0370 FeoB Fe2+ transport sy 99.8 5E-19 1.1E-23 145.1 15.1 159 7-174 1-167 (653)
207 PRK10512 selenocysteinyl-tRNA- 99.8 9.4E-19 2E-23 146.5 16.7 158 11-173 2-168 (614)
208 PRK10218 GTP-binding protein; 99.8 1.4E-18 3.1E-23 144.7 17.2 161 9-173 5-197 (607)
209 cd04166 CysN_ATPS CysN_ATPS su 99.8 5.3E-19 1.1E-23 130.3 12.8 147 11-162 1-185 (208)
210 PRK04000 translation initiatio 99.8 1E-18 2.2E-23 140.6 15.6 165 6-172 6-202 (411)
211 PF10662 PduV-EutP: Ethanolami 99.8 8E-19 1.7E-23 119.3 12.0 135 11-167 3-142 (143)
212 KOG0074 GTP-binding ADP-ribosy 99.8 6.1E-19 1.3E-23 117.0 10.7 159 6-170 14-178 (185)
213 cd01876 YihA_EngB The YihA (En 99.8 2.1E-18 4.6E-23 122.5 14.1 151 11-170 1-170 (170)
214 cd04168 TetM_like Tet(M)-like 99.8 7E-18 1.5E-22 126.3 16.9 155 11-171 1-235 (237)
215 KOG1707 Predicted Ras related/ 99.8 4.4E-19 9.6E-24 142.2 10.5 168 1-170 1-174 (625)
216 KOG0072 GTP-binding ADP-ribosy 99.8 2.3E-19 5E-24 119.3 6.8 160 8-172 17-180 (182)
217 cd01883 EF1_alpha Eukaryotic e 99.8 1.6E-18 3.5E-23 128.7 12.1 146 11-160 1-194 (219)
218 PRK04004 translation initiatio 99.8 7.8E-18 1.7E-22 140.4 17.1 156 7-169 4-216 (586)
219 cd04167 Snu114p Snu114p subfam 99.8 3.5E-18 7.5E-23 126.5 12.9 113 11-127 2-136 (213)
220 KOG1489 Predicted GTP-binding 99.8 5.5E-18 1.2E-22 127.1 13.7 155 11-169 198-365 (366)
221 PRK12736 elongation factor Tu; 99.8 1.1E-17 2.4E-22 134.2 15.6 159 7-171 10-201 (394)
222 COG0218 Predicted GTPase [Gene 99.8 2E-17 4.2E-22 117.5 14.6 159 7-172 22-198 (200)
223 PRK12735 elongation factor Tu; 99.8 1.7E-17 3.7E-22 133.2 16.1 160 6-171 9-203 (396)
224 TIGR00485 EF-Tu translation el 99.8 2.1E-17 4.5E-22 132.8 15.5 146 6-157 9-179 (394)
225 COG1084 Predicted GTPase [Gene 99.8 3E-17 6.5E-22 124.0 15.2 161 6-172 165-337 (346)
226 KOG1423 Ras-like GTPase ERA [C 99.8 2.8E-17 6.1E-22 122.8 14.0 165 5-173 68-273 (379)
227 cd01885 EF2 EF2 (for archaea a 99.8 2.7E-17 5.8E-22 121.7 12.9 113 11-127 2-138 (222)
228 cd04165 GTPBP1_like GTPBP1-lik 99.7 5.1E-17 1.1E-21 120.7 13.9 154 11-168 1-220 (224)
229 CHL00071 tufA elongation facto 99.7 6.4E-17 1.4E-21 130.4 15.5 147 6-158 9-180 (409)
230 COG0536 Obg Predicted GTPase [ 99.7 2.7E-17 5.9E-22 124.8 11.7 162 12-174 162-336 (369)
231 COG2262 HflX GTPases [General 99.7 1.3E-16 2.9E-21 124.0 15.6 158 9-173 192-358 (411)
232 PLN00043 elongation factor 1-a 99.7 9.9E-17 2.1E-21 130.1 14.8 149 6-160 4-202 (447)
233 TIGR02034 CysN sulfate adenyly 99.7 8.1E-17 1.8E-21 129.6 13.1 147 10-161 1-187 (406)
234 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 7.8E-17 1.7E-21 119.2 11.9 159 11-171 1-176 (232)
235 cd04104 p47_IIGP_like p47 (47- 99.7 1.4E-16 3E-21 116.5 12.8 157 10-174 2-187 (197)
236 PRK05124 cysN sulfate adenylyl 99.7 1.2E-16 2.6E-21 130.7 13.6 152 6-162 24-216 (474)
237 PLN03126 Elongation factor Tu; 99.7 4.5E-16 9.7E-21 126.9 16.4 146 7-158 79-249 (478)
238 COG0532 InfB Translation initi 99.7 4.3E-16 9.2E-21 124.8 15.8 159 8-173 4-172 (509)
239 cd01899 Ygr210 Ygr210 subfamil 99.7 3.5E-16 7.6E-21 121.4 14.9 162 12-176 1-274 (318)
240 PRK00049 elongation factor Tu; 99.7 5.4E-16 1.2E-20 124.5 16.3 159 7-171 10-203 (396)
241 cd01850 CDC_Septin CDC/Septin. 99.7 2.5E-16 5.4E-21 120.5 13.3 143 9-156 4-187 (276)
242 PLN03127 Elongation factor Tu; 99.7 5.4E-16 1.2E-20 125.8 15.8 159 7-171 59-252 (447)
243 cd04169 RF3 RF3 subfamily. Pe 99.7 6.5E-16 1.4E-20 117.6 15.3 114 10-129 3-138 (267)
244 PTZ00327 eukaryotic translatio 99.7 3.6E-16 7.9E-21 126.6 14.4 165 7-173 32-235 (460)
245 PTZ00141 elongation factor 1- 99.7 4.3E-16 9.3E-21 126.5 14.8 150 7-161 5-203 (446)
246 KOG0462 Elongation factor-type 99.7 3.7E-16 8.1E-21 124.8 13.3 162 8-173 59-237 (650)
247 KOG0077 Vesicle coat complex C 99.7 1.4E-16 3.1E-21 108.6 9.3 156 8-170 19-192 (193)
248 COG0481 LepA Membrane GTPase L 99.7 5.7E-16 1.2E-20 122.0 13.8 173 8-187 8-201 (603)
249 cd01886 EF-G Elongation factor 99.7 7E-16 1.5E-20 117.6 13.9 112 11-128 1-130 (270)
250 PRK05506 bifunctional sulfate 99.7 6.4E-16 1.4E-20 131.0 14.5 153 4-161 19-211 (632)
251 PRK00741 prfC peptide chain re 99.7 1.7E-15 3.6E-20 125.0 15.5 116 7-128 8-145 (526)
252 cd04170 EF-G_bact Elongation f 99.7 4E-16 8.7E-21 119.4 11.1 153 11-171 1-173 (268)
253 PF01926 MMR_HSR1: 50S ribosom 99.7 2.6E-15 5.7E-20 100.5 13.2 106 11-123 1-116 (116)
254 PRK13351 elongation factor G; 99.7 1.6E-15 3.5E-20 129.7 14.5 116 7-128 6-139 (687)
255 PF09439 SRPRB: Signal recogni 99.7 1.4E-16 3.1E-21 113.0 6.6 118 9-130 3-128 (181)
256 COG5256 TEF1 Translation elong 99.7 1.3E-15 2.8E-20 118.5 12.2 153 6-161 4-201 (428)
257 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 3.6E-15 7.8E-20 109.0 13.7 159 10-172 1-185 (196)
258 TIGR00503 prfC peptide chain r 99.7 5.2E-15 1.1E-19 122.2 15.8 116 7-127 9-145 (527)
259 COG1217 TypA Predicted membran 99.7 1.2E-15 2.5E-20 120.0 11.1 182 9-194 5-219 (603)
260 KOG1191 Mitochondrial GTPase [ 99.7 9.6E-16 2.1E-20 121.2 10.4 163 8-173 267-452 (531)
261 KOG1145 Mitochondrial translat 99.7 6.7E-15 1.5E-19 117.8 15.1 178 7-194 151-340 (683)
262 COG1163 DRG Predicted GTPase [ 99.7 7.9E-15 1.7E-19 110.8 14.6 154 9-171 63-289 (365)
263 COG3596 Predicted GTPase [Gene 99.6 1.3E-15 2.8E-20 112.8 10.0 162 6-172 36-223 (296)
264 KOG0090 Signal recognition par 99.6 6.2E-15 1.3E-19 104.9 12.4 155 10-170 39-238 (238)
265 PRK09602 translation-associate 99.6 2.7E-14 5.9E-19 114.1 16.7 165 10-178 2-278 (396)
266 PRK12739 elongation factor G; 99.6 3.4E-14 7.3E-19 121.6 17.8 116 7-128 6-139 (691)
267 TIGR00484 EF-G translation elo 99.6 2.1E-14 4.6E-19 122.8 15.9 122 2-129 3-142 (689)
268 PRK00007 elongation factor G; 99.6 1.1E-13 2.4E-18 118.3 15.9 119 6-130 7-143 (693)
269 PRK09866 hypothetical protein; 99.6 3.2E-13 7E-18 111.2 17.0 108 59-168 231-350 (741)
270 COG2895 CysN GTPases - Sulfate 99.5 1.3E-13 2.9E-18 105.2 12.3 151 7-160 4-192 (431)
271 PRK12740 elongation factor G; 99.5 1.9E-13 4.1E-18 116.9 13.8 108 15-128 1-126 (668)
272 TIGR00991 3a0901s02IAP34 GTP-b 99.5 4.9E-13 1.1E-17 102.3 14.4 126 5-133 34-172 (313)
273 KOG3905 Dynein light intermedi 99.5 5.2E-13 1.1E-17 101.0 14.3 164 8-174 51-293 (473)
274 COG4917 EutP Ethanolamine util 99.5 9.4E-14 2E-18 90.7 7.8 137 11-169 3-144 (148)
275 PF05783 DLIC: Dynein light in 99.5 1.8E-12 3.9E-17 105.1 16.3 166 7-175 23-268 (472)
276 PF04548 AIG1: AIG1 family; I 99.5 2.7E-13 5.9E-18 100.2 10.5 161 10-174 1-189 (212)
277 PTZ00258 GTP-binding protein; 99.5 1E-12 2.2E-17 104.1 14.2 85 8-92 20-126 (390)
278 cd01853 Toc34_like Toc34-like 99.5 1.5E-12 3.2E-17 98.1 13.9 121 7-130 29-165 (249)
279 PRK14845 translation initiatio 99.5 1.5E-12 3.2E-17 114.0 15.4 145 20-171 472-673 (1049)
280 TIGR00490 aEF-2 translation el 99.5 2.8E-13 6.1E-18 116.3 10.0 117 8-128 18-152 (720)
281 KOG1490 GTP-binding protein CR 99.5 6.5E-13 1.4E-17 105.6 10.5 162 6-170 165-340 (620)
282 TIGR00157 ribosome small subun 99.4 4.1E-13 8.9E-18 101.1 8.6 98 69-170 24-122 (245)
283 smart00010 small_GTPase Small 99.4 2.3E-12 5E-17 87.0 11.4 114 10-160 1-115 (124)
284 PRK09601 GTP-binding protein Y 99.4 8E-12 1.7E-16 98.1 15.6 83 10-92 3-107 (364)
285 COG5257 GCD11 Translation init 99.4 1.6E-12 3.4E-17 98.3 11.0 169 7-177 8-208 (415)
286 KOG0461 Selenocysteine-specifi 99.4 5.5E-12 1.2E-16 96.3 14.0 162 8-173 6-195 (522)
287 TIGR00101 ureG urease accessor 99.4 6.3E-12 1.4E-16 91.8 13.5 100 58-170 92-195 (199)
288 PRK07560 elongation factor EF- 99.4 2.2E-12 4.8E-17 111.0 12.9 115 9-127 20-152 (731)
289 PLN00116 translation elongatio 99.4 1.1E-12 2.3E-17 114.3 10.5 116 8-127 18-163 (843)
290 PRK13768 GTPase; Provisional 99.4 2.8E-12 6.2E-17 97.1 11.0 115 59-173 98-249 (253)
291 PTZ00416 elongation factor 2; 99.4 1.5E-12 3.2E-17 113.3 10.4 116 8-127 18-157 (836)
292 PF03029 ATP_bind_1: Conserved 99.4 5.9E-13 1.3E-17 99.6 6.2 112 59-170 92-236 (238)
293 KOG1707 Predicted Ras related/ 99.4 1.2E-11 2.5E-16 100.1 13.8 162 8-174 424-586 (625)
294 cd01900 YchF YchF subfamily. 99.4 1.2E-11 2.6E-16 94.0 11.6 81 12-92 1-103 (274)
295 KOG0458 Elongation factor 1 al 99.4 1.1E-11 2.4E-16 100.3 11.6 153 8-161 176-372 (603)
296 PF05049 IIGP: Interferon-indu 99.3 1.3E-11 2.7E-16 97.0 11.3 159 8-174 34-221 (376)
297 cd01882 BMS1 Bms1. Bms1 is an 99.3 3.2E-11 7E-16 89.9 12.6 139 7-157 37-182 (225)
298 TIGR00073 hypB hydrogenase acc 99.3 2.7E-11 5.9E-16 89.2 12.0 151 9-170 22-206 (207)
299 cd00066 G-alpha G protein alph 99.3 8E-11 1.7E-15 92.0 14.4 115 57-171 160-311 (317)
300 KOG3886 GTP-binding protein [S 99.3 6.9E-12 1.5E-16 90.7 7.4 147 9-157 4-165 (295)
301 PF00735 Septin: Septin; Inte 99.3 4E-11 8.6E-16 91.9 11.2 142 9-155 4-185 (281)
302 COG3276 SelB Selenocysteine-sp 99.3 5.5E-11 1.2E-15 93.7 11.8 155 11-171 2-162 (447)
303 COG0050 TufB GTPases - transla 99.3 4.7E-11 1E-15 89.4 10.8 161 7-173 10-203 (394)
304 smart00275 G_alpha G protein a 99.3 1.8E-10 3.9E-15 90.8 14.7 115 58-172 184-335 (342)
305 PF00350 Dynamin_N: Dynamin fa 99.3 7.9E-11 1.7E-15 83.8 11.6 63 59-124 102-168 (168)
306 PRK09435 membrane ATPase/prote 99.3 6.4E-11 1.4E-15 92.4 11.1 106 57-173 148-262 (332)
307 KOG1532 GTPase XAB1, interacts 99.3 1.1E-11 2.4E-16 91.9 6.2 114 58-173 116-266 (366)
308 COG0480 FusA Translation elong 99.3 2.7E-11 5.8E-16 102.5 9.1 117 7-128 8-142 (697)
309 COG0012 Predicted GTPase, prob 99.2 7E-10 1.5E-14 86.2 15.3 84 9-92 2-108 (372)
310 TIGR00993 3a0901s04IAP86 chlor 99.2 3.6E-10 7.8E-15 93.9 14.2 119 8-129 117-251 (763)
311 KOG1144 Translation initiation 99.2 6.1E-11 1.3E-15 98.3 9.0 161 7-171 473-687 (1064)
312 smart00053 DYNc Dynamin, GTPas 99.2 4.9E-10 1.1E-14 83.7 12.3 69 58-129 125-207 (240)
313 COG0378 HypB Ni2+-binding GTPa 99.2 8.5E-11 1.8E-15 83.3 7.5 80 83-170 119-200 (202)
314 TIGR00750 lao LAO/AO transport 99.2 2.7E-10 5.8E-15 88.5 10.6 104 57-171 126-238 (300)
315 TIGR02836 spore_IV_A stage IV 99.2 2.3E-09 4.9E-14 84.8 15.4 157 9-170 17-236 (492)
316 COG4108 PrfC Peptide chain rel 99.2 3.3E-10 7.2E-15 89.2 9.9 132 7-146 10-163 (528)
317 KOG0705 GTPase-activating prot 99.2 1.3E-10 2.7E-15 93.6 7.7 159 6-171 27-189 (749)
318 KOG1486 GTP-binding protein DR 99.1 3.6E-09 7.9E-14 77.8 13.9 154 9-171 62-288 (364)
319 KOG0410 Predicted GTP binding 99.1 1.2E-10 2.6E-15 88.4 5.8 151 9-171 178-341 (410)
320 COG5019 CDC3 Septin family pro 99.1 2.8E-09 6E-14 82.5 12.2 137 9-150 23-200 (373)
321 KOG0468 U5 snRNP-specific prot 99.1 9.1E-10 2E-14 90.7 9.5 116 8-127 127-262 (971)
322 KOG1547 Septin CDC10 and relat 99.1 2.3E-09 5E-14 78.3 10.0 145 9-158 46-230 (336)
323 PRK10463 hydrogenase nickel in 99.0 8.9E-10 1.9E-14 84.0 7.5 55 115-169 231-287 (290)
324 KOG0460 Mitochondrial translat 99.0 3E-09 6.6E-14 81.4 9.3 162 7-172 52-246 (449)
325 KOG2655 Septin family protein 99.0 1.1E-08 2.4E-13 79.7 12.5 143 9-156 21-202 (366)
326 cd01855 YqeH YqeH. YqeH is an 99.0 4E-09 8.6E-14 76.7 9.3 94 71-171 24-125 (190)
327 KOG0082 G-protein alpha subuni 99.0 6.4E-09 1.4E-13 81.0 10.6 123 47-171 186-344 (354)
328 KOG0463 GTP-binding protein GP 99.0 5E-09 1.1E-13 81.4 9.4 165 6-176 130-362 (641)
329 KOG1143 Predicted translation 98.9 8E-09 1.7E-13 80.1 9.4 171 7-182 165-398 (591)
330 COG5258 GTPBP1 GTPase [General 98.9 3.1E-08 6.8E-13 77.1 12.5 163 6-173 114-340 (527)
331 PRK12289 GTPase RsgA; Reviewed 98.9 6.2E-09 1.4E-13 82.2 9.0 95 71-170 79-174 (352)
332 cd01859 MJ1464 MJ1464. This f 98.9 3.7E-09 8E-14 74.4 6.8 94 72-171 3-96 (156)
333 COG5192 BMS1 GTP-binding prote 98.9 2.8E-08 6.2E-13 80.9 11.8 140 2-155 62-210 (1077)
334 PF03308 ArgK: ArgK protein; 98.9 4.5E-09 9.7E-14 78.2 6.6 152 8-171 28-230 (266)
335 KOG3887 Predicted small GTPase 98.9 1.9E-08 4.2E-13 73.7 9.4 159 9-170 27-201 (347)
336 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.2E-08 2.6E-13 78.8 8.8 86 78-168 75-161 (287)
337 PRK00098 GTPase RsgA; Reviewed 98.8 1.5E-08 3.3E-13 78.7 8.3 87 79-169 78-165 (298)
338 COG1703 ArgK Putative periplas 98.8 4.2E-08 9.1E-13 74.2 10.2 104 58-173 144-256 (323)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 9.7E-09 2.1E-13 71.0 6.3 54 11-68 85-138 (141)
340 PRK12288 GTPase RsgA; Reviewed 98.8 3.1E-08 6.7E-13 78.2 9.5 89 79-170 118-207 (347)
341 TIGR00092 GTP-binding protein 98.8 4.4E-08 9.4E-13 77.3 10.0 83 10-92 3-108 (368)
342 KOG1954 Endocytosis/signaling 98.8 2.8E-08 6.1E-13 77.0 8.2 121 8-131 57-228 (532)
343 KOG0448 Mitofusin 1 GTPase, in 98.8 1.7E-07 3.6E-12 77.9 12.9 146 7-156 107-311 (749)
344 TIGR03597 GTPase_YqeH ribosome 98.8 5.3E-08 1.2E-12 77.6 9.1 95 68-169 50-151 (360)
345 KOG1491 Predicted GTP-binding 98.8 5.7E-09 1.2E-13 79.9 3.3 85 8-92 19-125 (391)
346 KOG2486 Predicted GTPase [Gene 98.8 2.7E-08 5.9E-13 74.3 6.7 155 7-169 134-314 (320)
347 cd01858 NGP_1 NGP-1. Autoanti 98.8 3.4E-08 7.3E-13 69.6 7.0 56 8-68 101-157 (157)
348 KOG0467 Translation elongation 98.7 4.1E-08 9E-13 82.1 8.2 120 3-126 3-136 (887)
349 KOG0466 Translation initiation 98.7 2.1E-08 4.6E-13 75.8 4.5 164 8-177 37-247 (466)
350 cd04178 Nucleostemin_like Nucl 98.7 6.7E-08 1.5E-12 69.0 6.7 55 9-68 117-172 (172)
351 cd01856 YlqF YlqF. Proteins o 98.7 9.4E-08 2E-12 68.3 7.1 56 8-68 114-170 (171)
352 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.6E-07 3.5E-12 66.1 7.4 88 78-170 5-94 (157)
353 cd01855 YqeH YqeH. YqeH is an 98.6 7.9E-08 1.7E-12 69.9 6.0 55 9-68 127-190 (190)
354 TIGR03596 GTPase_YlqF ribosome 98.6 1.8E-07 3.9E-12 72.0 7.2 56 8-68 117-173 (276)
355 cd01859 MJ1464 MJ1464. This f 98.6 2.1E-07 4.6E-12 65.4 7.1 57 8-68 100-156 (156)
356 KOG1487 GTP-binding protein DR 98.6 7.2E-07 1.6E-11 66.2 9.8 86 9-96 59-151 (358)
357 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.4E-07 5.1E-12 71.7 7.8 57 8-69 120-177 (287)
358 PF03193 DUF258: Protein of un 98.6 7.2E-08 1.6E-12 67.4 4.4 60 10-72 36-101 (161)
359 cd01849 YlqF_related_GTPase Yl 98.6 3.9E-07 8.4E-12 64.0 8.2 84 83-170 1-84 (155)
360 cd01849 YlqF_related_GTPase Yl 98.6 1.9E-07 4.1E-12 65.6 6.2 57 7-68 98-155 (155)
361 TIGR03348 VI_IcmF type VI secr 98.6 2.9E-07 6.2E-12 83.5 8.8 113 12-129 114-258 (1169)
362 COG1618 Predicted nucleotide k 98.5 9.6E-06 2.1E-10 56.2 13.5 147 9-172 5-177 (179)
363 KOG0464 Elongation factor G [T 98.5 1.4E-07 3.1E-12 74.3 5.1 118 8-129 36-169 (753)
364 cd01851 GBP Guanylate-binding 98.5 8.3E-07 1.8E-11 66.1 8.6 83 9-93 7-103 (224)
365 cd01856 YlqF YlqF. Proteins o 98.5 4.1E-07 8.8E-12 65.0 6.6 91 73-171 11-101 (171)
366 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 6.2E-07 1.3E-11 62.0 6.9 77 76-158 6-84 (141)
367 COG1161 Predicted GTPases [Gen 98.5 4.4E-07 9.6E-12 71.2 6.3 57 8-69 131-188 (322)
368 PRK10416 signal recognition pa 98.4 1.9E-06 4.2E-11 67.4 9.7 95 57-163 196-302 (318)
369 KOG0465 Mitochondrial elongati 98.4 4.1E-07 8.9E-12 74.7 6.1 117 8-130 38-172 (721)
370 PRK12288 GTPase RsgA; Reviewed 98.4 5E-07 1.1E-11 71.5 6.4 59 11-72 207-271 (347)
371 KOG4273 Uncharacterized conser 98.4 5.9E-06 1.3E-10 61.2 10.9 156 10-169 5-220 (418)
372 PRK14722 flhF flagellar biosyn 98.4 3.5E-06 7.5E-11 67.0 10.1 144 9-160 137-321 (374)
373 COG1162 Predicted GTPases [Gen 98.4 5.6E-07 1.2E-11 68.7 5.4 59 11-72 166-230 (301)
374 TIGR00064 ftsY signal recognit 98.4 1.8E-06 3.8E-11 66.2 8.1 94 58-163 155-260 (272)
375 TIGR03596 GTPase_YlqF ribosome 98.4 1.6E-06 3.4E-11 66.8 7.8 100 66-173 5-105 (276)
376 KOG0447 Dynamin-like GTP bindi 98.4 2.5E-05 5.5E-10 64.0 14.3 83 58-143 412-508 (980)
377 cd03112 CobW_like The function 98.3 5.1E-06 1.1E-10 58.5 9.0 63 58-126 87-158 (158)
378 PRK13796 GTPase YqeH; Provisio 98.3 6E-06 1.3E-10 66.0 10.1 93 70-170 58-158 (365)
379 TIGR00157 ribosome small subun 98.3 1.4E-06 3E-11 65.9 5.9 57 9-71 120-184 (245)
380 PF09547 Spore_IV_A: Stage IV 98.3 2.4E-05 5.2E-10 62.4 12.8 156 9-169 17-235 (492)
381 PRK12289 GTPase RsgA; Reviewed 98.3 1.4E-06 3.1E-11 68.9 5.9 57 11-70 174-236 (352)
382 TIGR01425 SRP54_euk signal rec 98.3 1.3E-05 2.8E-10 64.8 11.4 93 57-161 182-280 (429)
383 PRK12727 flagellar biosynthesi 98.3 1.2E-05 2.7E-10 66.2 11.2 139 9-159 350-523 (559)
384 PRK01889 GTPase RsgA; Reviewed 98.3 5E-06 1.1E-10 66.2 8.4 83 79-167 110-193 (356)
385 PRK09563 rbgA GTPase YlqF; Rev 98.2 4.1E-06 8.9E-11 64.8 6.9 100 65-172 7-107 (287)
386 PRK14974 cell division protein 98.2 8.1E-06 1.8E-10 64.2 8.6 94 58-163 223-322 (336)
387 PRK13695 putative NTPase; Prov 98.2 5.9E-05 1.3E-09 54.0 12.0 78 79-170 94-172 (174)
388 KOG3859 Septins (P-loop GTPase 98.2 6.1E-06 1.3E-10 62.0 7.0 117 9-130 42-192 (406)
389 PF03266 NTPase_1: NTPase; In 98.2 7.6E-06 1.7E-10 58.2 7.3 136 11-159 1-163 (168)
390 PF00448 SRP54: SRP54-type pro 98.2 2.6E-05 5.7E-10 56.8 10.2 91 58-160 84-180 (196)
391 COG0523 Putative GTPases (G3E 98.2 3.7E-05 8E-10 60.2 11.5 88 58-153 85-184 (323)
392 KOG0099 G protein subunit Galp 98.2 7.2E-06 1.6E-10 61.1 6.8 118 57-174 201-372 (379)
393 PRK13796 GTPase YqeH; Provisio 98.2 3.7E-06 7.9E-11 67.2 5.5 56 9-69 160-221 (365)
394 COG1162 Predicted GTPases [Gen 98.2 2E-05 4.3E-10 60.4 9.1 97 71-170 69-166 (301)
395 TIGR03597 GTPase_YqeH ribosome 98.1 5.6E-06 1.2E-10 66.1 6.3 56 10-70 155-216 (360)
396 cd01854 YjeQ_engC YjeQ/EngC. 98.1 7.2E-06 1.6E-10 63.5 6.2 60 9-71 161-226 (287)
397 KOG1534 Putative transcription 98.1 8.9E-06 1.9E-10 58.7 5.7 111 59-171 99-251 (273)
398 PRK14721 flhF flagellar biosyn 98.1 6.5E-05 1.4E-09 60.8 11.3 152 8-172 190-383 (420)
399 PRK05703 flhF flagellar biosyn 98.1 5.2E-05 1.1E-09 61.8 10.8 90 58-159 300-396 (424)
400 KOG0459 Polypeptide release fa 98.1 5.5E-06 1.2E-10 65.2 4.9 155 7-164 77-279 (501)
401 KOG0085 G protein subunit Galp 98.1 8.5E-06 1.8E-10 59.7 5.3 116 57-172 198-350 (359)
402 COG1419 FlhF Flagellar GTP-bin 98.1 9.2E-05 2E-09 59.0 11.4 155 9-175 203-398 (407)
403 PRK00098 GTPase RsgA; Reviewed 98.1 9.7E-06 2.1E-10 63.1 5.9 59 9-70 164-228 (298)
404 cd03110 Fer4_NifH_child This p 98.1 0.00023 4.9E-09 51.1 12.6 85 56-149 91-175 (179)
405 cd03115 SRP The signal recogni 98.0 0.00011 2.3E-09 52.6 10.5 83 58-150 83-171 (173)
406 PF02492 cobW: CobW/HypB/UreG, 98.0 2.6E-05 5.6E-10 56.1 7.0 81 58-144 85-170 (178)
407 PF00503 G-alpha: G-protein al 98.0 8E-05 1.7E-09 60.3 10.5 119 49-169 228-388 (389)
408 PRK11537 putative GTP-binding 98.0 0.0002 4.4E-09 56.2 12.1 85 58-152 91-186 (318)
409 PRK11889 flhF flagellar biosyn 98.0 0.00012 2.5E-09 58.6 10.6 140 9-160 241-417 (436)
410 PRK12726 flagellar biosynthesi 98.0 7E-05 1.5E-09 59.6 8.9 92 58-161 286-383 (407)
411 PRK14723 flhF flagellar biosyn 97.9 0.00021 4.6E-09 61.7 12.0 106 58-172 264-380 (767)
412 PRK06995 flhF flagellar biosyn 97.9 0.00012 2.7E-09 60.2 10.1 103 59-173 336-449 (484)
413 KOG0469 Elongation factor 2 [T 97.9 2.3E-05 5.1E-10 63.5 5.4 125 10-138 20-175 (842)
414 COG3523 IcmF Type VI protein s 97.9 7E-05 1.5E-09 67.2 8.6 112 12-129 128-271 (1188)
415 PRK12723 flagellar biosynthesi 97.9 0.00021 4.6E-09 57.4 10.3 106 58-175 255-372 (388)
416 PRK12724 flagellar biosynthesi 97.8 0.00013 2.9E-09 58.8 8.5 134 9-152 223-393 (432)
417 PRK00771 signal recognition pa 97.8 5E-05 1.1E-09 61.9 5.9 90 59-160 177-272 (437)
418 PF06858 NOG1: Nucleolar GTP-b 97.8 0.00014 2.9E-09 41.4 5.8 45 80-125 12-58 (58)
419 cd03114 ArgK-like The function 97.8 0.00011 2.3E-09 51.3 6.6 58 57-125 91-148 (148)
420 KOG1424 Predicted GTP-binding 97.8 3.2E-05 6.9E-10 62.8 4.3 56 9-69 314-370 (562)
421 COG3640 CooC CO dehydrogenase 97.7 0.00058 1.2E-08 50.5 10.0 61 60-126 136-197 (255)
422 PRK10867 signal recognition pa 97.7 0.00069 1.5E-08 55.3 11.4 85 58-152 184-274 (433)
423 TIGR00959 ffh signal recogniti 97.7 0.00062 1.3E-08 55.5 10.9 86 58-153 183-274 (428)
424 cd02038 FleN-like FleN is a me 97.7 0.00018 4E-09 49.5 6.7 66 58-127 45-110 (139)
425 PRK06731 flhF flagellar biosyn 97.7 0.00033 7.1E-09 53.6 8.4 139 10-160 76-251 (270)
426 PF11111 CENP-M: Centromere pr 97.6 0.0041 8.9E-08 43.9 12.8 142 5-170 11-152 (176)
427 cd00009 AAA The AAA+ (ATPases 97.6 0.00046 1E-08 47.1 8.3 26 9-34 19-44 (151)
428 KOG2485 Conserved ATP/GTP bind 97.6 5.8E-05 1.3E-09 57.7 3.8 59 7-68 141-206 (335)
429 cd02042 ParA ParA and ParB of 97.6 0.00052 1.1E-08 44.5 7.7 82 12-105 2-84 (104)
430 KOG1533 Predicted GTPase [Gene 97.6 7.7E-05 1.7E-09 54.9 3.5 68 58-128 97-177 (290)
431 TIGR02475 CobW cobalamin biosy 97.6 0.0018 3.9E-08 51.5 11.4 98 58-164 93-223 (341)
432 PF05621 TniB: Bacterial TniB 97.6 0.0006 1.3E-08 52.5 8.3 104 7-124 59-190 (302)
433 cd01983 Fer4_NifH The Fer4_Nif 97.5 0.00087 1.9E-08 42.5 8.0 76 12-102 2-78 (99)
434 KOG2484 GTPase [General functi 97.5 8.2E-05 1.8E-09 58.7 3.4 58 7-68 250-307 (435)
435 PF13207 AAA_17: AAA domain; P 97.5 9.8E-05 2.1E-09 49.4 3.0 22 11-32 1-22 (121)
436 PRK07261 topology modulation p 97.5 0.0001 2.2E-09 52.7 3.0 22 10-31 1-22 (171)
437 COG0563 Adk Adenylate kinase a 97.4 0.00011 2.5E-09 52.7 3.0 23 10-32 1-23 (178)
438 cd03111 CpaE_like This protein 97.4 0.0012 2.5E-08 43.2 7.6 62 59-123 44-106 (106)
439 PF13555 AAA_29: P-loop contai 97.4 0.00016 3.5E-09 42.1 2.9 22 11-32 25-46 (62)
440 PRK08118 topology modulation p 97.4 0.00013 2.9E-09 51.8 3.0 23 10-32 2-24 (167)
441 PF13671 AAA_33: AAA domain; P 97.4 0.00014 3E-09 50.1 2.8 20 12-31 2-21 (143)
442 COG1136 SalX ABC-type antimicr 97.4 0.00014 3E-09 53.8 2.9 23 11-33 33-55 (226)
443 KOG0780 Signal recognition par 97.4 0.0008 1.7E-08 53.2 7.0 45 56-100 182-232 (483)
444 COG1126 GlnQ ABC-type polar am 97.3 0.00025 5.5E-09 51.7 3.6 25 10-34 29-53 (240)
445 cd03222 ABC_RNaseL_inhibitor T 97.3 0.0032 6.9E-08 45.2 9.0 26 9-34 25-50 (177)
446 COG1116 TauB ABC-type nitrate/ 97.3 0.00028 6.1E-09 52.6 3.5 23 11-33 31-53 (248)
447 PF13521 AAA_28: AAA domain; P 97.3 0.00016 3.5E-09 51.1 2.1 22 11-32 1-22 (163)
448 PRK14530 adenylate kinase; Pro 97.2 0.0003 6.4E-09 52.2 3.4 22 9-30 3-24 (215)
449 PRK14738 gmk guanylate kinase; 97.2 0.00043 9.2E-09 51.0 4.1 25 8-32 12-36 (206)
450 cd02019 NK Nucleoside/nucleoti 97.2 0.00035 7.5E-09 41.9 3.0 21 12-32 2-22 (69)
451 KOG2423 Nucleolar GTPase [Gene 97.2 0.00013 2.8E-09 57.7 1.3 85 4-96 302-389 (572)
452 cd01131 PilT Pilus retraction 97.2 0.0019 4.2E-08 47.2 7.0 23 11-33 3-25 (198)
453 TIGR00150 HI0065_YjeE ATPase, 97.2 0.0019 4.2E-08 43.9 6.5 24 10-33 23-46 (133)
454 PF00005 ABC_tran: ABC transpo 97.2 0.00036 7.8E-09 47.7 3.0 24 10-33 12-35 (137)
455 COG0194 Gmk Guanylate kinase [ 97.2 0.00025 5.4E-09 50.5 2.1 25 9-33 4-28 (191)
456 PRK01889 GTPase RsgA; Reviewed 97.2 0.00047 1E-08 55.1 3.8 24 10-33 196-219 (356)
457 PRK06217 hypothetical protein; 97.1 0.00041 8.8E-09 50.1 3.1 23 10-32 2-24 (183)
458 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00042 9E-09 45.2 2.8 21 10-30 16-36 (107)
459 PRK03839 putative kinase; Prov 97.1 0.00043 9.3E-09 49.8 3.1 23 10-32 1-23 (180)
460 PRK10078 ribose 1,5-bisphospho 97.1 0.00045 9.8E-09 50.0 3.2 22 11-32 4-25 (186)
461 PRK04195 replication factor C 97.1 0.011 2.4E-07 49.3 11.7 24 10-33 40-63 (482)
462 cd00071 GMPK Guanosine monopho 97.1 0.00049 1.1E-08 47.2 2.9 21 12-32 2-22 (137)
463 smart00382 AAA ATPases associa 97.1 0.00054 1.2E-08 46.4 3.2 26 10-35 3-28 (148)
464 COG3840 ThiQ ABC-type thiamine 97.1 0.00051 1.1E-08 48.9 2.9 25 9-33 25-49 (231)
465 TIGR02322 phosphon_PhnN phosph 97.0 0.00053 1.1E-08 49.2 2.9 22 11-32 3-24 (179)
466 PF00004 AAA: ATPase family as 97.0 0.0006 1.3E-08 46.0 3.0 21 12-32 1-21 (132)
467 PRK08233 hypothetical protein; 97.0 0.0007 1.5E-08 48.6 3.5 25 8-32 2-26 (182)
468 PF03205 MobB: Molybdopterin g 97.0 0.0006 1.3E-08 47.0 3.0 22 11-32 2-23 (140)
469 COG3638 ABC-type phosphate/pho 97.0 0.00056 1.2E-08 50.6 2.9 21 11-31 32-52 (258)
470 PRK10751 molybdopterin-guanine 97.0 0.00085 1.8E-08 47.8 3.7 24 9-32 6-29 (173)
471 cd03238 ABC_UvrA The excision 97.0 0.00067 1.4E-08 48.6 3.1 22 9-30 21-42 (176)
472 COG3839 MalK ABC-type sugar tr 97.0 0.00073 1.6E-08 53.1 3.6 23 12-34 32-54 (338)
473 PRK05416 glmZ(sRNA)-inactivati 97.0 0.011 2.3E-07 45.9 9.9 20 11-30 8-27 (288)
474 PRK05480 uridine/cytidine kina 97.0 0.00088 1.9E-08 49.4 3.9 26 7-32 4-29 (209)
475 PF13238 AAA_18: AAA domain; P 97.0 0.00062 1.3E-08 45.7 2.8 21 12-32 1-21 (129)
476 TIGR00235 udk uridine kinase. 97.0 0.00093 2E-08 49.2 3.8 25 8-32 5-29 (207)
477 TIGR03263 guanyl_kin guanylate 97.0 0.00071 1.5E-08 48.5 3.0 22 11-32 3-24 (180)
478 cd02036 MinD Bacterial cell di 96.9 0.04 8.6E-07 39.2 12.0 84 59-149 64-147 (179)
479 PRK14532 adenylate kinase; Pro 96.9 0.00078 1.7E-08 48.8 3.1 22 10-31 1-22 (188)
480 PRK00625 shikimate kinase; Pro 96.9 0.00078 1.7E-08 48.1 3.0 22 10-31 1-22 (173)
481 COG1936 Predicted nucleotide k 96.9 0.00075 1.6E-08 47.5 2.8 21 10-30 1-21 (180)
482 PF03215 Rad17: Rad17 cell cyc 96.9 0.0094 2E-07 50.0 9.7 21 12-32 48-68 (519)
483 PRK10646 ADP-binding protein; 96.9 0.0073 1.6E-07 42.1 7.6 22 11-32 30-51 (153)
484 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00075 1.6E-08 48.7 2.9 21 10-30 4-24 (188)
485 PF02367 UPF0079: Uncharacteri 96.9 0.0032 7E-08 42.2 5.6 22 11-32 17-38 (123)
486 cd01130 VirB11-like_ATPase Typ 96.9 0.00092 2E-08 48.4 3.1 25 9-33 25-49 (186)
487 PRK14737 gmk guanylate kinase; 96.9 0.00085 1.8E-08 48.6 2.9 23 10-32 5-27 (186)
488 PF04665 Pox_A32: Poxvirus A32 96.9 0.00099 2.2E-08 49.9 3.3 24 9-32 13-36 (241)
489 PRK02496 adk adenylate kinase; 96.9 0.001 2.2E-08 48.0 3.2 22 10-31 2-23 (184)
490 PRK08727 hypothetical protein; 96.9 0.012 2.5E-07 44.3 9.1 21 12-32 44-64 (233)
491 PRK14531 adenylate kinase; Pro 96.9 0.001 2.2E-08 48.1 3.2 22 10-31 3-24 (183)
492 cd02023 UMPK Uridine monophosp 96.9 0.00089 1.9E-08 48.9 2.9 21 12-32 2-22 (198)
493 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00099 2.2E-08 49.4 3.1 24 10-33 31-54 (218)
494 PRK13949 shikimate kinase; Pro 96.9 0.001 2.2E-08 47.4 3.0 21 11-31 3-23 (169)
495 COG1117 PstB ABC-type phosphat 96.9 0.00091 2E-08 48.9 2.7 21 10-30 34-54 (253)
496 PRK13851 type IV secretion sys 96.8 0.0059 1.3E-07 48.5 7.5 25 9-33 162-186 (344)
497 TIGR00960 3a0501s02 Type II (G 96.8 0.001 2.3E-08 49.2 3.1 24 10-33 30-53 (216)
498 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0011 2.3E-08 49.0 3.2 24 10-33 28-51 (211)
499 TIGR03420 DnaA_homol_Hda DnaA 96.8 0.0028 6E-08 47.2 5.4 24 9-32 38-61 (226)
500 PTZ00088 adenylate kinase 1; P 96.8 0.0011 2.4E-08 49.6 3.1 23 9-31 6-28 (229)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-43 Score=245.82 Aligned_cols=172 Identities=42% Similarity=0.696 Sum_probs=164.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
-.+.+||+|+|++|||||+|+.||..+.|.+.+..|+++++....+.++++.++++||||+|+++|+++...+++++|++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCe-EEEeecCCCCChHHHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKPLFR 164 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~~~ 164 (208)
|+|||+++.+||..+..|+.+++.+..+++|.++|+||+|+.+.+.++.++++.++.+++++ ++++||+++.++++.|.
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~ 165 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFL 165 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHcCCCcccc
Q 028507 165 KIAAALPGMETLS 177 (208)
Q Consensus 165 ~l~~~~~~~~~~~ 177 (208)
.|+..+.......
T Consensus 166 ~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 166 TLAKELKQRKGLH 178 (205)
T ss_pred HHHHHHHHhcccC
Confidence 9998886554443
No 2
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-42 Score=240.63 Aligned_cols=201 Identities=78% Similarity=1.162 Sum_probs=178.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+|++++|..+||||+||+++..+.|+..+.+|+++++....+.+.+..+++++|||+|+++|+.+.+.|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
|+|||+++..+|+....|++.++...+. ++.|++|+||.||.+.++++.++.+..++++++.|+++||+.|.||+++|.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 9999999999999999999999999886 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcccccccccc-ccccccccccCCCCCCCCCCCCCCC
Q 028507 165 KIAAALPGMETLSSTKQEE-MVDVNLRSTTGNASQSQSQSSGCSC 208 (208)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~c~~ 208 (208)
.|+..+++.+......+.+ ...++.+...++ +.....+.|||
T Consensus 179 rIaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~--~~~s~~~~~~C 221 (221)
T KOG0094|consen 179 RIAAALPGMEVLEILSKQESMVDINLKGSPNE--QQASKPGLCSC 221 (221)
T ss_pred HHHHhccCccccccccccccceeEEccCCCCc--ccccCCCCCCC
Confidence 9999999887755433333 444444433221 12222566888
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-40 Score=231.48 Aligned_cols=172 Identities=41% Similarity=0.791 Sum_probs=164.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
..++||+++|..+||||||+-|+..+.|.....+|++--+....+.+.+..+++.||||+|+++|.++-+-|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 46799999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||+++.+||..++.|+.++.....+++.+.++|||.|+.+.+++..+++..++...++.++++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCccccc
Q 028507 167 AAALPGMETLSS 178 (208)
Q Consensus 167 ~~~~~~~~~~~~ 178 (208)
.+.+++......
T Consensus 163 a~~lp~~~~~~~ 174 (200)
T KOG0092|consen 163 AEKLPCSDPQER 174 (200)
T ss_pred HHhccCcccccc
Confidence 999987766544
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-39 Score=230.21 Aligned_cols=172 Identities=45% Similarity=0.740 Sum_probs=164.8
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhcc
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|+..+....+||+++|.+|||||+|+.++..+.|...+..+.++++....+..++..+++++|||+|+++|..+...|++
T Consensus 4 ~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr 83 (207)
T KOG0078|consen 4 MAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR 83 (207)
T ss_pred cccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh
Confidence 33445577899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
+++++++|||+++..+|+++..|+..|..+..+++|+++|+||+|+.+.+++..++.+.+|.++|+.++|+||++|.||.
T Consensus 84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred hcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028507 161 PLFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
+.|-.|++.+.+
T Consensus 164 eaF~~La~~i~~ 175 (207)
T KOG0078|consen 164 EAFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=219.29 Aligned_cols=178 Identities=38% Similarity=0.652 Sum_probs=165.1
Q ss_pred CCCCCC--CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhh
Q 028507 1 MAPVSA--LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 78 (208)
Q Consensus 1 m~~~~~--~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 78 (208)
|...++ ...+||+++|.+|+|||+|+-+|..+.|+.....+++.++..+.+.+++..+++.||||+|+++|+.+.+.+
T Consensus 1 M~~~ss~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSy 80 (209)
T KOG0080|consen 1 MGDSSSGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSY 80 (209)
T ss_pred CCCCccCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhH
Confidence 444433 456999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCC
Q 028507 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 157 (208)
++++.++|+|||++.+++|..+..|++++..++. +++..++|+||+|...++.++.++...|++++++.++++||++.+
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRE 160 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhc
Confidence 9999999999999999999999999999998875 778889999999988889999999999999999999999999999
Q ss_pred ChHHHHHHHHHHcCCCccccc
Q 028507 158 NIKPLFRKIAAALPGMETLSS 178 (208)
Q Consensus 158 ~i~~~~~~l~~~~~~~~~~~~ 178 (208)
++...|+.++..+.+.+.-..
T Consensus 161 ~V~~~FeelveKIi~tp~l~~ 181 (209)
T KOG0080|consen 161 NVQCCFEELVEKIIETPSLWE 181 (209)
T ss_pred cHHHHHHHHHHHHhcCcchhh
Confidence 999999999999987766554
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-39 Score=221.83 Aligned_cols=168 Identities=38% Similarity=0.689 Sum_probs=160.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
....+|++++|+.|||||+|+.+++.+.|...+..|.++++-...+.++++.++++||||.|++.|++..+.+++++.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
|+|||+++.++|..+..|+..++++..+++.+++++||+|+...+.++.++.++||+++|+.++++||++++++++.|..
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999998
Q ss_pred HHHHcCCC
Q 028507 166 IAAALPGM 173 (208)
Q Consensus 166 l~~~~~~~ 173 (208)
....+.+.
T Consensus 163 ta~~Iy~~ 170 (216)
T KOG0098|consen 163 TAKEIYRK 170 (216)
T ss_pred HHHHHHHH
Confidence 88777543
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=5.2e-37 Score=224.23 Aligned_cols=163 Identities=35% Similarity=0.671 Sum_probs=151.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+.|+++|..|||||||+++|..+.|...+.++.+.++....+.+++..+.+.|||++|+++|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46999999999999999999999998888899888888888889998899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhc-CCeEEEeecCCCCChHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
|++++++|+.+..|+..+......++|+++|+||+|+.+.+++...+++.++.++ ++.++++||++|.|++++|++|++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999888776678999999999999888888888888888875 789999999999999999999998
Q ss_pred HcCC
Q 028507 169 ALPG 172 (208)
Q Consensus 169 ~~~~ 172 (208)
.+.+
T Consensus 161 ~~~~ 164 (202)
T cd04120 161 DILK 164 (202)
T ss_pred HHHH
Confidence 8754
No 8
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=211.17 Aligned_cols=184 Identities=38% Similarity=0.646 Sum_probs=170.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+-++.+|+|.+|+|||+|+.++..+.|..+|..+++.++....+.+++..+++.|||++|++.|+.+...++++.+++|+
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
|||+++.++|.++.+|+++++..+. .+|-++|+||.|..+.+.+..++++.|+...|+.+|++|+++.+|++..|..|.
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence 9999999999999999999998885 699999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCccccccccccccccccccc
Q 028507 168 AALPGMETLSSTKQEEMVDVNLRST 192 (208)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (208)
+.+.....+.+.++.+...+..+++
T Consensus 166 ~qvl~~k~r~~~~~~r~~~~~l~~n 190 (198)
T KOG0079|consen 166 KQVLQAKLRESVEQQRADAVSLKDN 190 (198)
T ss_pred HHHHHHHHhhcHHHHhhcceEeccC
Confidence 9988777666666666555555554
No 9
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=214.15 Aligned_cols=203 Identities=36% Similarity=0.589 Sum_probs=171.8
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhcc
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|++...-.-+||+++|.+|+|||+|++++.+.+|...+-.+++.++..+.+.+++..+.++||||+|+++|.++--.+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 55544445699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCcc--cCCCHHHHHHHHHhcC-CeEEEeec
Q 028507 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRELN-VMFIETSA 153 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa 153 (208)
++|..++|||++++++|+.+..|.+++..... ..-|.+|++||+|+... ++++..+++.|+...| ++|||+||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999999988775 44679999999998653 7899999999999776 69999999
Q ss_pred CCCCChHHHHHHHHHHcCCCccccccccccccccccccccCCCCCCCCCCCCCCC
Q 028507 154 KAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNLRSTTGNASQSQSQSSGCSC 208 (208)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 208 (208)
++..|+.+.|+.+.+.+...+.. ................+...++++|.|
T Consensus 161 K~~~NV~~AFe~ia~~aL~~E~~-----~~~~~~~~~d~i~~~~~~~~~~~~c~c 210 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALANEDR-----EIAELADYSDQIVLSTKANNQSSGCEC 210 (210)
T ss_pred cccccHHHHHHHHHHHHHhccch-----hhhhhhhcCcccccccccccCCCCCCC
Confidence 99999999999999988766554 111122233333333344555667877
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.9e-36 Score=219.38 Aligned_cols=167 Identities=34% Similarity=0.578 Sum_probs=153.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+||+++|..|+|||||+.+|..+.+...+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 46999999999999999999999998888877888888877778888888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
|||++++++|+.+..|+..+.... +++|++||+||.|+.+.+.++.++++.++...+++++++||++|.|++++|++|+
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999999997665 5799999999999988788889999999999999999999999999999999999
Q ss_pred HHcCCCcc
Q 028507 168 AALPGMET 175 (208)
Q Consensus 168 ~~~~~~~~ 175 (208)
+.+.....
T Consensus 164 ~~i~~~~~ 171 (189)
T cd04121 164 RIVLMRHG 171 (189)
T ss_pred HHHHHhcC
Confidence 87754333
No 11
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.9e-36 Score=222.35 Aligned_cols=165 Identities=36% Similarity=0.591 Sum_probs=148.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC-CEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988888998888877777777 7788999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC-CeEEEeecCCCCChHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~----~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~ 163 (208)
||++++++++.+..|+..+.... ..++|+++|+||.|+.+.+....+++..++...+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999999886542 3568999999999997667778889999999998 599999999999999999
Q ss_pred HHHHHHcCCCc
Q 028507 164 RKIAAALPGME 174 (208)
Q Consensus 164 ~~l~~~~~~~~ 174 (208)
++|.+.+.+..
T Consensus 161 ~~l~~~l~~~~ 171 (201)
T cd04107 161 RFLVKNILAND 171 (201)
T ss_pred HHHHHHHHHhc
Confidence 99999886543
No 12
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=9.5e-36 Score=220.60 Aligned_cols=167 Identities=37% Similarity=0.690 Sum_probs=154.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.|||++|++++..++..+++.++++|
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 46799999999999999999999999988888889888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l 169 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998777888888888888889999999999999999999999
Q ss_pred HHHcCCC
Q 028507 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
+..+.+.
T Consensus 170 ~~~i~~~ 176 (216)
T PLN03110 170 LLEIYHI 176 (216)
T ss_pred HHHHHHH
Confidence 9888654
No 13
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-36 Score=213.21 Aligned_cols=169 Identities=36% Similarity=0.702 Sum_probs=161.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
+-.+.+||+++|++++|||-|+.++..+.|.....+|+++++....+.++++.++.+||||+|+++|+.....+++++.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
.++|||++...+|+.+.+|+.+++.+..+++++++|+||+|+...+.+..++++.++...+..++++||.+..|+++.|+
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q 028507 165 KIAAALPGM 173 (208)
Q Consensus 165 ~l~~~~~~~ 173 (208)
.++..+.+.
T Consensus 170 ~~l~~I~~~ 178 (222)
T KOG0087|consen 170 RVLTEIYKI 178 (222)
T ss_pred HHHHHHHHH
Confidence 888877544
No 14
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=2.3e-35 Score=216.15 Aligned_cols=183 Identities=36% Similarity=0.630 Sum_probs=159.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.|||+||++.+..++..++++++++|+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 46899999999999999999999999988888888888877888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
|||+++++++..+..|+..+.... +..|+++|+||+|+.+...+...+...++...+++++++|+++|.|+.++|++|.
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 999999999999999999987654 5689999999999987777778888888888899999999999999999999999
Q ss_pred HHcCCCcccccccccccccccccc
Q 028507 168 AALPGMETLSSTKQEEMVDVNLRS 191 (208)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~ 191 (208)
..+..........+....+.....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~ 187 (199)
T cd04110 164 ELVLRAKKDNLAKQQQQQQNDVVK 187 (199)
T ss_pred HHHHHhhhccCcccccCCccccCc
Confidence 999776655555554444444333
No 15
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.6e-35 Score=217.53 Aligned_cols=165 Identities=34% Similarity=0.561 Sum_probs=141.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+|+|.+|+|||||+++|..+.+.. ..++.+.++..... ..+.+.|||++|++.+..+...+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999999864 46666655443322 3578999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc-------------------ccCCCHHHHHHHHHhcC-----
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVSIEEGEAKSRELN----- 145 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 145 (208)
|++++++|+.+..|+..+......++|+++|+||+|+.+ .+.+..+++..++.+.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988888776667799999999999975 57788899999998876
Q ss_pred ---------CeEEEeecCCCCChHHHHHHHHHHcCCCcccccc
Q 028507 146 ---------VMFIETSAKAGFNIKPLFRKIAAALPGMETLSST 179 (208)
Q Consensus 146 ---------~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~ 179 (208)
++|+++||++|.|++++|..+++.+.+.......
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~ 198 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRA 198 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 6899999999999999999999988765554443
No 16
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=8.4e-35 Score=207.49 Aligned_cols=163 Identities=35% Similarity=0.661 Sum_probs=150.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+++|++|+|||||+++|..+.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999888888888787777788888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
||++++++++.+..|+..+.....++.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+.++|.+++.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988776677999999999999888888888999999999999999999999999999999987
Q ss_pred HcC
Q 028507 169 ALP 171 (208)
Q Consensus 169 ~~~ 171 (208)
.+.
T Consensus 162 ~~~ 164 (166)
T cd04122 162 KIY 164 (166)
T ss_pred HHh
Confidence 663
No 17
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1e-34 Score=211.52 Aligned_cols=165 Identities=42% Similarity=0.742 Sum_probs=148.1
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCC-CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+||+++|++|+|||||+++|..+.+.. .+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988853 5677777777777778888889999999999999998888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
||++++++++.+..|+..+......++|+++|+||.|+...+.+...+...++..++++++++||++|.|++++|.+|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876667999999999999777777778888888888999999999999999999999999
Q ss_pred HcCCCc
Q 028507 169 ALPGME 174 (208)
Q Consensus 169 ~~~~~~ 174 (208)
.+.+..
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 886554
No 18
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-35 Score=197.94 Aligned_cols=183 Identities=34% Similarity=0.588 Sum_probs=164.4
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCC
Q 028507 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (208)
+-+.+.-+|++++|+.|+|||+|++++..+++......++++++....+.+.++.++++||||+|+++|++..+.+++++
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 33445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 028507 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPL 162 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 162 (208)
.+.++|||+++.++|+.+..|+..++....+++-+++++||.|+.++++++..++..|+.+..+.++++|+++|+|+++.
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 162 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC-CCcccccccccccc
Q 028507 163 FRKIAAALP-GMETLSSTKQEEMV 185 (208)
Q Consensus 163 ~~~l~~~~~-~~~~~~~~~~~~~~ 185 (208)
|-.....+. +++...-.++...+
T Consensus 163 Fl~c~~tIl~kIE~GElDPer~gs 186 (214)
T KOG0086|consen 163 FLKCARTILNKIESGELDPERMGS 186 (214)
T ss_pred HHHHHHHHHHHHhhcCCCHHHccc
Confidence 876666553 44444433333333
No 19
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.6e-34 Score=213.23 Aligned_cols=165 Identities=38% Similarity=0.714 Sum_probs=148.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEE-CCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999988877888888877777766 4557899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
|||++++++++.+..|+..+..... ...|+++|+||.|+.+.+.+...+...++..++++++++||++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999977654 457789999999998877888888999999999999999999999999999999
Q ss_pred HHHcCCC
Q 028507 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
++.+.+.
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9877544
No 20
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=6.5e-35 Score=212.39 Aligned_cols=185 Identities=32% Similarity=0.531 Sum_probs=152.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|.+|+|||||+++|..+.+...+.++.+..+ ......++..+.+.||||+|++++..++..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999988777777776443 3455677888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 91 VASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999998876543 5689999999999987777888888888888899999999999999999999999
Q ss_pred HHcCCCccccccccccccccccccccCCCCCCCCCCCCCCC
Q 028507 168 AALPGMETLSSTKQEEMVDVNLRSTTGNASQSQSQSSGCSC 208 (208)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 208 (208)
+.+.+...... ...+.+..+++++.+|||
T Consensus 160 ~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 160 RALRQQRQGGQ------------GPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHhhcccC------------CCcCCCCCcccccccCce
Confidence 87753333321 112333344566677775
No 21
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.9e-34 Score=214.15 Aligned_cols=166 Identities=27% Similarity=0.475 Sum_probs=147.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
.....+||+++|++|||||+|+.+|..+.|...+.++.+.++ ...+.+++..+.+.||||+|++.|..+...+++++|+
T Consensus 9 ~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~ 87 (232)
T cd04174 9 PLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 87 (232)
T ss_pred CceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcE
Confidence 335679999999999999999999999999988888887665 4457788899999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHhcCC-eEEE
Q 028507 85 AVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIE 150 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 150 (208)
+|+|||++++++|+. +..|+..+.... ++.|+++|+||+|+.+ .+.++.++++.++..+++ .|++
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~E 166 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLE 166 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999998 589999998765 5689999999999864 256888999999999998 7999
Q ss_pred eecCCCC-ChHHHHHHHHHHcCC
Q 028507 151 TSAKAGF-NIKPLFRKIAAALPG 172 (208)
Q Consensus 151 ~sa~~~~-~i~~~~~~l~~~~~~ 172 (208)
|||++|. +++++|..++..+.+
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHH
Confidence 9999998 899999999887653
No 22
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=2.6e-34 Score=212.96 Aligned_cols=164 Identities=38% Similarity=0.597 Sum_probs=148.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECC-EEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+++ ..+.+.|||++|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888899999888877777754 468999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
||++++++++.+..|+..+..... .+.|+++|+||.|+.+.+.+...+...++..++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999987653 35789999999999877788888889999999999999999999999999999
Q ss_pred HHHHcCCC
Q 028507 166 IAAALPGM 173 (208)
Q Consensus 166 l~~~~~~~ 173 (208)
|+..+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988653
No 23
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-35 Score=197.33 Aligned_cols=163 Identities=40% Similarity=0.691 Sum_probs=156.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
-+||++||+.|+|||+|+++++.+-|++....+++.++..+.+.+++.++++.||||+|+++|++....+++.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
||++...+|+-+-+|+.+|..+....+.-|+|+||+|+.+.+++.....++|+......++++||++..|++.+|..++.
T Consensus 87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence 99999999999999999999999888999999999999999999999999999998889999999999999999998877
Q ss_pred HcC
Q 028507 169 ALP 171 (208)
Q Consensus 169 ~~~ 171 (208)
.+-
T Consensus 167 rli 169 (213)
T KOG0095|consen 167 RLI 169 (213)
T ss_pred HHH
Confidence 663
No 24
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.7e-34 Score=207.00 Aligned_cols=160 Identities=35% Similarity=0.583 Sum_probs=143.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|+|||+|+.++..+.|...+.++.+..+ ...+.+++..+++.||||+|+++|..+...+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888889887655 455677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCccc----------CCCHHHHHHHHHhcCC-eEEEeecCCCC
Q 028507 90 DVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR----------QVSIEEGEAKSRELNV-MFIETSAKAGF 157 (208)
Q Consensus 90 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 157 (208)
|++++++|+.+ ..|+..+.... +++|+++|+||+|+.+.+ .++.+++..++...++ .++++||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999997665 479999999999996543 4788899999999998 69999999999
Q ss_pred ChHHHHHHHHHHcC
Q 028507 158 NIKPLFRKIAAALP 171 (208)
Q Consensus 158 ~i~~~~~~l~~~~~ 171 (208)
|++++|+.+++.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
No 25
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.4e-34 Score=207.36 Aligned_cols=162 Identities=26% Similarity=0.503 Sum_probs=145.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+++|.+|+|||||++++..+.+...+.|+.+..+ ...+.+++..+.+.||||+|++.|..+...+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 3568999999999999999999999999888888887554 456778888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHhcCC-eEEEee
Q 028507 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 152 (208)
+|||++++++|+.+ ..|+..+.... ++.|+++|+||.|+.+ .+.++.++++.++..+++ +|+++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 79999998765 5799999999999864 245889999999999996 999999
Q ss_pred cCCCCC-hHHHHHHHHHHc
Q 028507 153 AKAGFN-IKPLFRKIAAAL 170 (208)
Q Consensus 153 a~~~~~-i~~~~~~l~~~~ 170 (208)
|++|.| ++++|..++..+
T Consensus 161 Ak~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 161 ALQSENSVRDIFHVATLAC 179 (182)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 999998 999999998754
No 26
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.2e-34 Score=207.85 Aligned_cols=163 Identities=41% Similarity=0.696 Sum_probs=149.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998778888887777777888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
|+++++++..+..|+..+.......+|+++|+||.|+.+...+...++..++...+++++++||+++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776679999999999998777778888888888889999999999999999999999998
Q ss_pred cCC
Q 028507 170 LPG 172 (208)
Q Consensus 170 ~~~ 172 (208)
+.+
T Consensus 161 ~~~ 163 (188)
T cd04125 161 IIK 163 (188)
T ss_pred HHH
Confidence 853
No 27
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.7e-34 Score=203.95 Aligned_cols=162 Identities=37% Similarity=0.708 Sum_probs=147.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++|.++++...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888887777777777777889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
|++++++++.+..|+..+........|+++|+||+|+.+.+....++...++..++++++++||+++.|+.++|++|...
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999987766679999999999998777777788888888889999999999999999999999887
Q ss_pred cC
Q 028507 170 LP 171 (208)
Q Consensus 170 ~~ 171 (208)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
No 28
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.6e-34 Score=202.69 Aligned_cols=160 Identities=38% Similarity=0.664 Sum_probs=147.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888888888887788888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
|++++++++.+..|+..+......++|+++|+||.|+.+.+.+...++..+++.++++++++||++|.|++++|.+|++.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999999987765679999999999998888888889999999999999999999999999999999865
No 29
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=4e-34 Score=208.25 Aligned_cols=163 Identities=31% Similarity=0.513 Sum_probs=142.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
|..+||+++|..|+|||||+.++..+.|...+.++.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i 79 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI 79 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence 4569999999999999999999999999888888887544 445667888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHhcC-CeEEEee
Q 028507 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELN-VMFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s 152 (208)
+|||++++++|+.+. .|+..+.... +++|+++|+||.|+.+.. .+..++++.++..++ ++++++|
T Consensus 80 lvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 158 (191)
T cd01875 80 ICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS 158 (191)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 999999999999996 6888787654 579999999999996542 356778889999888 5999999
Q ss_pred cCCCCChHHHHHHHHHHcC
Q 028507 153 AKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 153 a~~~~~i~~~~~~l~~~~~ 171 (208)
|++|.|++++|+++++.+.
T Consensus 159 Ak~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 159 ALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998774
No 30
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=4.9e-34 Score=203.73 Aligned_cols=164 Identities=42% Similarity=0.739 Sum_probs=150.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+......+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999999999988888998888877788888888999999999999999888899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
|||+++++++..+..|+..+......++|+++|+||.|+.+.+....++...++..++++++++||+++.|++++|+++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999887667799999999999987777778888888888899999999999999999999999
Q ss_pred HHcC
Q 028507 168 AALP 171 (208)
Q Consensus 168 ~~~~ 171 (208)
+.+.
T Consensus 162 ~~~~ 165 (167)
T cd01867 162 KDIK 165 (167)
T ss_pred HHHH
Confidence 8764
No 31
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-35 Score=195.36 Aligned_cols=168 Identities=36% Similarity=0.685 Sum_probs=159.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+|+.++|++.+|||+|+.++.+..|.....++.++++..+.+.-..+.++++||||.|++.|+.+...++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 35799999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
+||+++.++|..++.|...|..++-.+.|+|+++||+|+.+++.++.++.+.++.++|+.+|++||+.+.|++.+|+.+.
T Consensus 100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV 179 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcc
Q 028507 168 AALPGMET 175 (208)
Q Consensus 168 ~~~~~~~~ 175 (208)
..+.+...
T Consensus 180 ~~Ic~kms 187 (193)
T KOG0093|consen 180 DIICDKMS 187 (193)
T ss_pred HHHHHHhh
Confidence 98875543
No 32
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=208.45 Aligned_cols=165 Identities=36% Similarity=0.704 Sum_probs=150.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+||+|+|++|+|||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 46999999999999999999999999888888888888877788888888899999999999999888999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
|||+++++++..+..|+..+.......+|+++|+||.|+.+.+.+...+.++++..++++++++||+++.|++++|++++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999988777667899999999999988777888899999999999999999999999999999998
Q ss_pred HHcCC
Q 028507 168 AALPG 172 (208)
Q Consensus 168 ~~~~~ 172 (208)
+.+.+
T Consensus 165 ~~~~~ 169 (210)
T PLN03108 165 AKIYK 169 (210)
T ss_pred HHHHH
Confidence 87753
No 33
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=4.9e-34 Score=204.53 Aligned_cols=163 Identities=33% Similarity=0.534 Sum_probs=146.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 58999999999999999999999999887788876444 44567788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.++.++...++..++++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999988887654 36799999999999987778888899999999999999999999999999999999
Q ss_pred HHcCC
Q 028507 168 AALPG 172 (208)
Q Consensus 168 ~~~~~ 172 (208)
..+.+
T Consensus 161 ~~~~~ 165 (172)
T cd04141 161 REIRR 165 (172)
T ss_pred HHHHH
Confidence 87653
No 34
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5e-34 Score=207.55 Aligned_cols=165 Identities=32% Similarity=0.552 Sum_probs=146.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+.++||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 5679999999999999999999999998877777776544 556677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
+|||++++++++.+..|+..+..... .++|+++|+||.|+.+.+.+...++..++..++++++++||+++.|+.++|++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999998876543 57899999999998776777777888888888899999999999999999999
Q ss_pred HHHHcCC
Q 028507 166 IAAALPG 172 (208)
Q Consensus 166 l~~~~~~ 172 (208)
|++.+.+
T Consensus 162 l~~~l~~ 168 (189)
T PTZ00369 162 LVREIRK 168 (189)
T ss_pred HHHHHHH
Confidence 9988753
No 35
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=6e-34 Score=204.85 Aligned_cols=160 Identities=27% Similarity=0.522 Sum_probs=142.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+++|++|+|||+|++++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999999888888887554 45677888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHhcCC-eEEEeecC
Q 028507 89 YDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAK 154 (208)
Q Consensus 89 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~ 154 (208)
||++++++|+.+ ..|+..+.... ++.|+++|+||.|+.+ .+.++.+++++++..+++ .++++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999995 79999998765 5799999999999854 245788999999999997 89999999
Q ss_pred CCCC-hHHHHHHHHHHc
Q 028507 155 AGFN-IKPLFRKIAAAL 170 (208)
Q Consensus 155 ~~~~-i~~~~~~l~~~~ 170 (208)
+|.+ ++++|..+++..
T Consensus 159 ~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 159 TSEKSVRDIFHVATMAC 175 (178)
T ss_pred cCCcCHHHHHHHHHHHH
Confidence 9995 999999998853
No 36
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.2e-33 Score=201.46 Aligned_cols=163 Identities=40% Similarity=0.734 Sum_probs=149.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999998888888888777777888888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
||+++++++..+..|+..+.....++.|+++|+||.|+.+.+.+...++..++...+++++++||++|.|+.++|++|.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 161 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR 161 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence 99999999999999999998776667999999999999877778888889999999999999999999999999999998
Q ss_pred HcC
Q 028507 169 ALP 171 (208)
Q Consensus 169 ~~~ 171 (208)
.+.
T Consensus 162 ~~~ 164 (166)
T cd01869 162 EIK 164 (166)
T ss_pred HHH
Confidence 763
No 37
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.2e-33 Score=200.58 Aligned_cols=160 Identities=42% Similarity=0.763 Sum_probs=152.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.+..+...++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999899999999999999999999999999999988999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHHc
Q 028507 91 VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
++++++++.+..|+..+......++|+++++||.|+.+.+.+..++++.++..++.+|+++|++++.++.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988876799999999999988889999999999999999999999999999999999998876
No 38
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=3.5e-33 Score=206.45 Aligned_cols=168 Identities=38% Similarity=0.650 Sum_probs=144.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+|+|++|+|||||+++|.++.+. .+.++.+.+.....+.+++..+.+.||||||++.+..++..+++.+|++|
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 45799999999999999999999988773 55677777777777778888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHH-HHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 87 VVYDVASRQSFLNTSK-WIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
+|||+++++++..+.. |...+.... ..+.|+++|+||.|+.....+...+...++..+++.++++||+++.|++++|+
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999876 555554433 24589999999999987777777888888888899999999999999999999
Q ss_pred HHHHHcCCCcc
Q 028507 165 KIAAALPGMET 175 (208)
Q Consensus 165 ~l~~~~~~~~~ 175 (208)
+|...+.+.+.
T Consensus 171 ~l~~~~~~~~~ 181 (211)
T PLN03118 171 ELALKIMEVPS 181 (211)
T ss_pred HHHHHHHhhhh
Confidence 99999876543
No 39
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2e-33 Score=200.38 Aligned_cols=162 Identities=30% Similarity=0.595 Sum_probs=148.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+++||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888999988888888888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERG-----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
|++++.+++.+..|+..+..... .+.|+++|+||.|+.+.......+...++...+++++++||+++.|+.++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999987654 4689999999999976666778888888888899999999999999999999
Q ss_pred HHHHHcC
Q 028507 165 KIAAALP 171 (208)
Q Consensus 165 ~l~~~~~ 171 (208)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9988763
No 40
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.9e-33 Score=199.31 Aligned_cols=163 Identities=40% Similarity=0.706 Sum_probs=147.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.+||+++|++|+|||||++++.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999999888888888877777788888887899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l 166 (208)
|||++++.++..+..|+..+......++|+++|+||+|+.+.+.....++..++...+. .++++||++|.|++++|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999876667799999999999988777788888888888886 78999999999999999999
Q ss_pred HHHc
Q 028507 167 AAAL 170 (208)
Q Consensus 167 ~~~~ 170 (208)
.+.+
T Consensus 162 ~~~l 165 (165)
T cd01864 162 ATEL 165 (165)
T ss_pred HHhC
Confidence 8753
No 41
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.5e-33 Score=203.50 Aligned_cols=164 Identities=38% Similarity=0.649 Sum_probs=147.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC----------CEEEEEEEEEcCCchhhhhchhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQERFRSLIPS 77 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~G~~~~~~~~~~ 77 (208)
+.+||+++|++|+|||||++++..+.+...+.++.+.++....+.+. +..+.+.|||++|++.+..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999988888888877766655553 35688999999999999999999
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCC
Q 028507 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 156 (208)
+++++|++|+|||+++++++..+..|+..+.... .++.|+++|+||+|+.+.+.+...++..++...+++++++||+++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 9999999999999999999999999999987654 357899999999999887888888899999999999999999999
Q ss_pred CChHHHHHHHHHHcC
Q 028507 157 FNIKPLFRKIAAALP 171 (208)
Q Consensus 157 ~~i~~~~~~l~~~~~ 171 (208)
.|++++|++|.+.+.
T Consensus 163 ~~v~~l~~~l~~~~~ 177 (180)
T cd04127 163 TNVEKAVERLLDLVM 177 (180)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988663
No 42
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=194.96 Aligned_cols=164 Identities=39% Similarity=0.703 Sum_probs=151.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEE-CCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
..++++++|++-+|||+|++.++.+++.+-..|+.+.+++...+.. ++..+++++|||+|+++|++....++++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 5689999999999999999999999999999999999988766655 456789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC-CCCc-EEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p-iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
+|||+++.++|+.+..|+.+...+.. +..+ ..+|++|.|+...++++.++++.++..+|..++++|+++|.|+++.|.
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD 166 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence 99999999999999999999887776 5555 467889999999999999999999999999999999999999999999
Q ss_pred HHHHHcC
Q 028507 165 KIAAALP 171 (208)
Q Consensus 165 ~l~~~~~ 171 (208)
.|.+.+.
T Consensus 167 mlaqeIf 173 (213)
T KOG0091|consen 167 MLAQEIF 173 (213)
T ss_pred HHHHHHH
Confidence 9988774
No 43
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.5e-33 Score=203.50 Aligned_cols=165 Identities=22% Similarity=0.513 Sum_probs=144.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999988887788888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc-----cCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-----RQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
|++++++++.+..|+..+........| ++|+||+|+... ......+.+.++...+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999876555567 678999998531 11224566778888899999999999999999999
Q ss_pred HHHHHcCCCcc
Q 028507 165 KIAAALPGMET 175 (208)
Q Consensus 165 ~l~~~~~~~~~ 175 (208)
++.+.+.+.+.
T Consensus 160 ~l~~~l~~~~~ 170 (182)
T cd04128 160 IVLAKAFDLPL 170 (182)
T ss_pred HHHHHHHhcCC
Confidence 99988865433
No 44
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=3e-33 Score=198.43 Aligned_cols=161 Identities=39% Similarity=0.723 Sum_probs=148.1
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+|+|++|+|||||+++|+++.+.....++.+.++....+.+++..+.+.+||+||++.+..+...+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 68999999999999999999999988888888887777777888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
|++++.++..+..|+..+.....+++|+++++||.|+.+.+.....++..++...++.++++|++++.|+.++|+++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999999887777889999999999998877788888999999999999999999999999999999875
Q ss_pred c
Q 028507 170 L 170 (208)
Q Consensus 170 ~ 170 (208)
+
T Consensus 161 ~ 161 (161)
T cd04113 161 I 161 (161)
T ss_pred C
Confidence 3
No 45
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=4.5e-33 Score=198.30 Aligned_cols=163 Identities=37% Similarity=0.743 Sum_probs=149.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+||+++|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..+...+++.++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 35899999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
|||++++.++..+..|+..+......++|+++|+||.|+...+....++...++...++.++++||++|.|++++|+++.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887766799999999999987777778888888888889999999999999999999998
Q ss_pred HHc
Q 028507 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 46
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.4e-33 Score=199.18 Aligned_cols=161 Identities=34% Similarity=0.563 Sum_probs=142.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.|||++|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 47999999999999999999999988777777765 44456677788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.....+...++..++.+++++||+++.|+.++|+++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999999877543 5799999999999977666777777778888889999999999999999999998
Q ss_pred HHc
Q 028507 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 765
No 47
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=4.8e-33 Score=198.81 Aligned_cols=163 Identities=37% Similarity=0.717 Sum_probs=149.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+|+|.+|+|||||++++.++.+...+.++.+.+.....+..++....+.+||++|++.+..+...+++.+|++|+|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999998888888888888778888888888999999999999999889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
||+++++++..+..|+..+.....+++|+++|+||.|+.+......++...++...++.++++|++++.|++++|.++.+
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~ 163 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK 163 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876678999999999999877777888888888889999999999999999999999988
Q ss_pred HcC
Q 028507 169 ALP 171 (208)
Q Consensus 169 ~~~ 171 (208)
.+.
T Consensus 164 ~~~ 166 (168)
T cd01866 164 EIY 166 (168)
T ss_pred HHH
Confidence 764
No 48
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=7.7e-33 Score=202.00 Aligned_cols=164 Identities=37% Similarity=0.653 Sum_probs=143.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCC-CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+||+|+|.+|+|||||+++|.++.+.. .+.++.+.++....+.+++..+.+.+||++|.+++..+...++.++|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998864 5777877777777788888889999999999999998888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc----cCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
||++++++++.+..|+..+.... +++|+++|+||.|+.+. ..+...++..++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999887653 46999999999998643 34555677788888889999999999999999999
Q ss_pred HHHHHcCCCc
Q 028507 165 KIAAALPGME 174 (208)
Q Consensus 165 ~l~~~~~~~~ 174 (208)
+|.+.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999886543
No 49
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=7.7e-33 Score=204.55 Aligned_cols=162 Identities=23% Similarity=0.503 Sum_probs=140.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+|+|.+|+|||+|+++|..+.++..+.|+.+..+ ...+.+++..+.+.||||+|++.|..+...+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 37999999999999999999999999988889887555 35677888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcCC-eEEEeecC
Q 028507 89 YDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK 154 (208)
Q Consensus 89 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~ 154 (208)
||++++++|+.+ ..|...+... .+++|+++|+||+|+.+. ..++.++.+.++.+.++ .|+|+||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999999998 4676666543 467999999999999652 13677889999999996 99999999
Q ss_pred CCCC-hHHHHHHHHHHcCC
Q 028507 155 AGFN-IKPLFRKIAAALPG 172 (208)
Q Consensus 155 ~~~~-i~~~~~~l~~~~~~ 172 (208)
++.+ ++++|.........
T Consensus 159 ~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 159 SSERSVRDVFHVATVASLG 177 (222)
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 9985 99999998886543
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=4.3e-33 Score=198.23 Aligned_cols=162 Identities=31% Similarity=0.557 Sum_probs=142.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++++|++|+|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 58999999999999999999998888777777776443 45677788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.......+...++..++++++++||+++.|++++|+++.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999987654 36799999999999987777777777888888889999999999999999999999
Q ss_pred HHcC
Q 028507 168 AALP 171 (208)
Q Consensus 168 ~~~~ 171 (208)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8764
No 51
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=6.1e-33 Score=205.83 Aligned_cols=165 Identities=32% Similarity=0.579 Sum_probs=146.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+..+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 77899999999999999999999999998888999988888777777777899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||+++++++..+..|+..+.... +++|+++|+||+|+.. +.....+. .++...++.++++||++|.|++++|++|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999998764 5799999999999854 33344444 6677778899999999999999999999
Q ss_pred HHHcCCCc
Q 028507 167 AAALPGME 174 (208)
Q Consensus 167 ~~~~~~~~ 174 (208)
++.+.+..
T Consensus 168 ~~~~~~~~ 175 (219)
T PLN03071 168 ARKLAGDP 175 (219)
T ss_pred HHHHHcCc
Confidence 99886543
No 52
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=8.5e-33 Score=196.25 Aligned_cols=159 Identities=38% Similarity=0.711 Sum_probs=143.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC--CEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+||+++|.+|+|||||++++.++.+...+.++.+.++....+.+. +..+.+.+||+||++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999888888888888766666666 667899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
|||++++++++.+..|+..+.... .++|+++|+||.|+.....+..+++..++..++++++++|++++.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999987654 5699999999999988777888888899999999999999999999999999997
Q ss_pred HH
Q 028507 168 AA 169 (208)
Q Consensus 168 ~~ 169 (208)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 64
No 53
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.2e-32 Score=197.04 Aligned_cols=163 Identities=36% Similarity=0.625 Sum_probs=144.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|.+|+|||||++++.++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998999999888887888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccC--CCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
+++++++..+..|+..+..... ...|+++|+||.|+.+... ....+...++.+++.+++++||++|.|++++|+.|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999866543 4578999999999865443 345566777888889999999999999999999999
Q ss_pred HHcCCC
Q 028507 168 AALPGM 173 (208)
Q Consensus 168 ~~~~~~ 173 (208)
..+.+.
T Consensus 162 ~~~~~~ 167 (170)
T cd04108 162 ALTFEL 167 (170)
T ss_pred HHHHHc
Confidence 887543
No 54
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=8.4e-33 Score=200.83 Aligned_cols=166 Identities=30% Similarity=0.460 Sum_probs=140.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC-CEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+||+|+|++|+|||||+++|.++.+...+.++.+.++... +... +..+.+.||||+|++.+..+...++.++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999888878776655443 4443 6678999999999999999988899999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCccc----CCCHHHHHHHHHhcCC-eEEEeecCCCCChHHH
Q 028507 89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR----QVSIEEGEAKSRELNV-MFIETSAKAGFNIKPL 162 (208)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~----~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~ 162 (208)
||++++++++.+. .|+..+... .+++|+++|+||.|+.... .+...++..++..+++ +++++||++|.|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999985 588777654 3579999999999986532 4667888889999998 9999999999999999
Q ss_pred HHHHHHHcCCCcccc
Q 028507 163 FRKIAAALPGMETLS 177 (208)
Q Consensus 163 ~~~l~~~~~~~~~~~ 177 (208)
|+.+.+.+.......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999886544433
No 55
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.7e-32 Score=195.00 Aligned_cols=162 Identities=46% Similarity=0.801 Sum_probs=148.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+......+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
|++++++++.+..|+..+.....+++|+++++||+|+...+....+.+..++...+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776789999999999997767777888888888889999999999999999999999987
Q ss_pred cC
Q 028507 170 LP 171 (208)
Q Consensus 170 ~~ 171 (208)
+.
T Consensus 161 ~~ 162 (164)
T smart00175 161 IL 162 (164)
T ss_pred Hh
Confidence 64
No 56
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.2e-32 Score=196.28 Aligned_cols=161 Identities=32% Similarity=0.601 Sum_probs=141.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+|||+|++.+..+...++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999999888888888888877777777888899999999999999888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
|+++++++..+..|+..+..... ++|+++|+||+|+.+. ... .+...++...++.++++||++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987764 7999999999998633 333 33455666777899999999999999999999988
Q ss_pred cCCC
Q 028507 170 LPGM 173 (208)
Q Consensus 170 ~~~~ 173 (208)
+.+.
T Consensus 158 ~~~~ 161 (166)
T cd00877 158 LLGN 161 (166)
T ss_pred HHhc
Confidence 8653
No 57
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2e-32 Score=194.10 Aligned_cols=161 Identities=86% Similarity=1.238 Sum_probs=147.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||+..+..++..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
|+++++++..+..|+..+......+.|+++++||+|+.+.......+....+...++.++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999999877665579999999999997777777888888888889999999999999999999999875
Q ss_pred c
Q 028507 170 L 170 (208)
Q Consensus 170 ~ 170 (208)
+
T Consensus 161 l 161 (161)
T cd01861 161 L 161 (161)
T ss_pred C
Confidence 3
No 58
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.2e-32 Score=197.84 Aligned_cols=159 Identities=31% Similarity=0.509 Sum_probs=138.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|+|||||+++|..+.+...+.|+.+..+. ..+.+++..+.+.|||++|++++..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999998888888875553 34567788899999999999999998988999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcC-CeEEEeecCC
Q 028507 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSAKA 155 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~sa~~ 155 (208)
|++++++++.+. .|+..+.... +++|+++|+||.|+.+. +.+..++++.++...+ +.++++||++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999986 5888887654 56999999999998653 4567788888888887 6999999999
Q ss_pred CCChHHHHHHHHHHc
Q 028507 156 GFNIKPLFRKIAAAL 170 (208)
Q Consensus 156 ~~~i~~~~~~l~~~~ 170 (208)
|.|++++|+.++..+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998743
No 59
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.1e-32 Score=194.51 Aligned_cols=161 Identities=36% Similarity=0.585 Sum_probs=141.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|.+|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.|||++|++++..++..+++++|++|+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 48999999999999999999999998777777664 45556777788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
||++++.++..+..|+..+..... .++|+++|+||+|+.+...+...+...++...+.+++++||+++.|+.++|.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998877543 6799999999999977666666777888888888999999999999999999998
Q ss_pred HHc
Q 028507 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 765
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.6e-32 Score=194.43 Aligned_cols=160 Identities=33% Similarity=0.515 Sum_probs=139.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+++|.+|+|||||+++++++.+...+.++.+..+ ......+...+.+.+||++|++++..+...++..+|++|+|
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence 37999999999999999999999998777777765333 44555667778999999999999998888889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
||++++++++.+..|+..+..... +++|+++|+||+|+.+.+.+...++..++...++.++++||++|.|++++|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 999999999999999888876543 56999999999999776777777888888888899999999999999999999
Q ss_pred HHHH
Q 028507 166 IAAA 169 (208)
Q Consensus 166 l~~~ 169 (208)
|+.+
T Consensus 160 l~~~ 163 (165)
T cd04140 160 LLNL 163 (165)
T ss_pred HHhc
Confidence 9864
No 61
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=6.1e-32 Score=192.03 Aligned_cols=162 Identities=48% Similarity=0.837 Sum_probs=147.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|++|+|||||+++|.++.+.....++.+..+....+.+++..+.+.+||+||++++...+..+++++|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999998777778887777777888888889999999999999988888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
||+++++++.....|+..+.....+.+|+++++||+|+.+.......+...++...++.++++|+++|.|+.++|++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998877677999999999998766677778888888888999999999999999999999998
Q ss_pred Hc
Q 028507 169 AL 170 (208)
Q Consensus 169 ~~ 170 (208)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 76
No 62
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=4.4e-32 Score=194.19 Aligned_cols=163 Identities=37% Similarity=0.641 Sum_probs=146.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh-hchhhhccCCcEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAV 86 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i 86 (208)
+.+||+++|++|+|||||+++++.+.+...+.++.+.+.....+.+++..+.+.+||++|++++. .++..+++++|++|
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 35899999999999999999999999888888888888888888888888999999999999886 56788899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCC---CCChHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA---GFNIKPL 162 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~---~~~i~~~ 162 (208)
+|||++++.++..+..|+..+.... ..++|+++|+||.|+...+++...+...++...+++++++||++ +.+++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 9999999999999999999987764 35799999999999988888888888889988889999999999 8899999
Q ss_pred HHHHHHHc
Q 028507 163 FRKIAAAL 170 (208)
Q Consensus 163 ~~~l~~~~ 170 (208)
|..+.+.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99998765
No 63
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=6.8e-32 Score=193.14 Aligned_cols=163 Identities=39% Similarity=0.623 Sum_probs=144.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+..+||+++|++|+|||||++++.++.+...+.++.+.+.....+.+++..+.+.|||+||++++..++..+++.+|++|
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 45699999999999999999999999998877788887777777888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCChHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKP 161 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~ 161 (208)
+|||++++++++.+..|+..+..... .++|+++|+||.|+. .+.....+++.++..++. +++++||++|.|+.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 99999999999999999998876542 568999999999986 556677888889888885 899999999999999
Q ss_pred HHHHHHHHc
Q 028507 162 LFRKIAAAL 170 (208)
Q Consensus 162 ~~~~l~~~~ 170 (208)
+|+++++.+
T Consensus 162 ~~~~~~~~~ 170 (170)
T cd04116 162 AFEEAVRRV 170 (170)
T ss_pred HHHHHHhhC
Confidence 999998653
No 64
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4.5e-32 Score=194.68 Aligned_cols=159 Identities=32% Similarity=0.535 Sum_probs=138.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|.+|+|||||+.++..+.+...+.++.+ ......+.+++..+.+.||||+|++.+..++..+++++|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 47999999999999999999999999888888875 44455667788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcCC-eEEEeecC
Q 028507 89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK 154 (208)
Q Consensus 89 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~ 154 (208)
||++++++|+.+. .|+..+.... +++|+++|+||.|+.+. +.+...++..++.+++. .++++||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999985 6888776654 57999999999998542 24778888999999885 99999999
Q ss_pred CCCChHHHHHHHHHH
Q 028507 155 AGFNIKPLFRKIAAA 169 (208)
Q Consensus 155 ~~~~i~~~~~~l~~~ 169 (208)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 65
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=3.3e-32 Score=193.60 Aligned_cols=161 Identities=37% Similarity=0.587 Sum_probs=141.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+|+|++|+|||||+++|.++.+...+.++.+ +.......+++..+.+.+||+||++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888777666665 334556667787889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
|++++++++.+..|+..+..... .++|+++|+||+|+...+.....++..++...+.+++++||+++.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888866543 46899999999999776777778888888888999999999999999999999998
Q ss_pred HcC
Q 028507 169 ALP 171 (208)
Q Consensus 169 ~~~ 171 (208)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 664
No 66
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=5.6e-32 Score=192.35 Aligned_cols=162 Identities=33% Similarity=0.552 Sum_probs=141.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.+||+++|++|+|||||++++.++.+...+.++.+.. ......+++..+.+.+||+||++++..++..+++++|++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 35899999999999999999999988877766666533 34456677878899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
|||++++.+++.+..|+..+.... ..++|+++++||+|+.........+...++..++++++++||++|.|++++|++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999999887653 3579999999999997766677778888888888999999999999999999999
Q ss_pred HHHc
Q 028507 167 AAAL 170 (208)
Q Consensus 167 ~~~~ 170 (208)
+..+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8765
No 67
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-32 Score=180.41 Aligned_cols=202 Identities=32% Similarity=0.594 Sum_probs=170.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
..-+|.+++|.-|+|||+|+.++...+|-.+-..++++++....+.+.+..+++.||||.|+++|+...+.+++++.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 45689999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++.+.++..+..|+...+....++.-+++++||.|+...+.+..++++.|+.+.|+.++++|+++|.++++.|-.-
T Consensus 89 mvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~ 168 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLET 168 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999988666
Q ss_pred HHHc-CCCccccccccccccccccccccCC----CCCCCCCCCCCCC
Q 028507 167 AAAL-PGMETLSSTKQEEMVDVNLRSTTGN----ASQSQSQSSGCSC 208 (208)
Q Consensus 167 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~c~~ 208 (208)
++.+ .+++..+..-.....-+..+...|. .+-...++.+|.|
T Consensus 169 akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 169 AKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred HHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 5555 3445444333222222223332222 2223456678988
No 68
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=7.3e-32 Score=191.19 Aligned_cols=160 Identities=31% Similarity=0.548 Sum_probs=139.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|++|+|||||+++|.++.+...+.++.+.. ....+.+++..+.+.+||++|++++..++..++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 4799999999999999999999998877777776643 355567777778899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
||++++.++..+..|+..+..... .++|+++|+||+|+.+ +.....+...++...+++++++||++|.|++++|++|+
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999998877653 5799999999999865 44556777788888899999999999999999999998
Q ss_pred HHc
Q 028507 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 764
No 69
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=187.84 Aligned_cols=164 Identities=41% Similarity=0.703 Sum_probs=150.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.-++|++++|..=+|||+|+-++..++|.-....+.--.+..+.+.+.+....++||||+|+++|-.+-+-++++.++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 34799999999999999999999999997776666655666677778888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++|.++|..++.|..+++...+..+-+++|+||+|+.+++.++..+++.++...|+.|+++||+++.||.++|+.|
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L 170 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL 170 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999987
Q ss_pred HHHc
Q 028507 167 AAAL 170 (208)
Q Consensus 167 ~~~~ 170 (208)
...+
T Consensus 171 t~~M 174 (218)
T KOG0088|consen 171 TAKM 174 (218)
T ss_pred HHHH
Confidence 6544
No 70
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=9.2e-32 Score=196.51 Aligned_cols=165 Identities=25% Similarity=0.358 Sum_probs=137.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh--------chhhhccC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD 81 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~ 81 (208)
+||+|+|.+|||||||+++|.++.+...+.++.+.+.....+.+++..+.+.||||||...+.. .....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 6899999999999999999999999888888887666666677788888999999999654321 12334789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-hcCCeEEEeecCCCC
Q 028507 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGF 157 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~ 157 (208)
+|++|+|||++++++++.+..|+..+.... ..++|+++|+||+|+...+....++.+.++. .++++++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999999887764 3679999999999997766666666666654 568899999999999
Q ss_pred ChHHHHHHHHHHcCCCc
Q 028507 158 NIKPLFRKIAAALPGME 174 (208)
Q Consensus 158 ~i~~~~~~l~~~~~~~~ 174 (208)
|++++|+.++..+....
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999998776443
No 71
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.1e-31 Score=195.19 Aligned_cols=160 Identities=34% Similarity=0.554 Sum_probs=137.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
.||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.|||++|++.+..++..++..+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3899999999999999999999999888778776554 345566777889999999999999988888999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHhcC-CeEEEeecCC
Q 028507 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELN-VMFIETSAKA 155 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~sa~~ 155 (208)
|++++++|+.+. .|+..+.... ++.|+++|+||.|+.+.+ .+..++...++...+ +.++++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986 5888887654 579999999999996543 245666777887777 6899999999
Q ss_pred CCChHHHHHHHHHHcC
Q 028507 156 GFNIKPLFRKIAAALP 171 (208)
Q Consensus 156 ~~~i~~~~~~l~~~~~ 171 (208)
|.|++++|.+|++.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998885
No 72
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.3e-31 Score=190.01 Aligned_cols=159 Identities=29% Similarity=0.541 Sum_probs=137.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988777777776766667777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
|++++.+++.+..|+..+.... +++|+++|+||+|+... ...+...++...+++++++||++|.|++++|+.+++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999997653 46999999999998432 1334455666778899999999999999999999987
Q ss_pred cCC
Q 028507 170 LPG 172 (208)
Q Consensus 170 ~~~ 172 (208)
+.+
T Consensus 157 ~~~ 159 (161)
T cd04124 157 AVS 159 (161)
T ss_pred HHh
Confidence 654
No 73
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=2.5e-31 Score=189.13 Aligned_cols=160 Identities=36% Similarity=0.601 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC--cCCCCCCCccceeeEEEEEEEC-CEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+||+++|++|+|||||+++|..+ .+...+.++.+.++......++ +..+.+.+||++|++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6777888888877766666664 56789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||+++++++..+..|+..+.... .++|+++|+||.|+.+..++...+.+.++...+++++++|++++.|++++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999987765 569999999999997777777777777777888999999999999999999999
Q ss_pred HHHc
Q 028507 167 AAAL 170 (208)
Q Consensus 167 ~~~~ 170 (208)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8875
No 74
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=4.1e-31 Score=187.36 Aligned_cols=161 Identities=40% Similarity=0.713 Sum_probs=143.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++|.++.+.....++.+.+.....+...+..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 68999999999999999999999887766667666666666777777789999999999999999998999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
|+++++++..+..|+..+......++|+++++||+|+...+.....+....+...+..++++|++++.|+.++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988776679999999999998777777788888888889999999999999999999999876
Q ss_pred c
Q 028507 170 L 170 (208)
Q Consensus 170 ~ 170 (208)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.8e-31 Score=193.72 Aligned_cols=156 Identities=30% Similarity=0.567 Sum_probs=139.0
Q ss_pred EcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCCh
Q 028507 15 LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR 94 (208)
Q Consensus 15 vG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 94 (208)
+|.+|||||||+++++.+.+...+.++.+.+.....+.+++..+.+.|||++|++.|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999998888889988888888888888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 95 QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 95 ~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
.+++.+..|+..+.... .++|+++|+||+|+.. +.+.... ..++...++.++++||++|.|+.++|++|+..+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 5799999999999854 3344443 467777889999999999999999999999988554
No 76
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=4.6e-31 Score=198.47 Aligned_cols=161 Identities=29% Similarity=0.476 Sum_probs=140.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|+|||||+++|+++.+...+.++.+ +.....+.+++..+.+.||||+|++.|..+...++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999877777775 555667788888899999999999999888888889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-cCCeEEEeecCCCCCh
Q 028507 90 DVASRQSFLNTSKWIDEVRTE---------RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~---------~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i 159 (208)
|++++++|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++.. .++.++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999999888654 225799999999999977677777887777654 4678999999999999
Q ss_pred HHHHHHHHHHcC
Q 028507 160 KPLFRKIAAALP 171 (208)
Q Consensus 160 ~~~~~~l~~~~~ 171 (208)
+++|++|...+.
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 77
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.2e-31 Score=193.00 Aligned_cols=158 Identities=30% Similarity=0.399 Sum_probs=129.2
Q ss_pred ceeEEEEcCCCCCHHHHHH-HhhcCc-----CCCCCCCccce-eeEEEE--------EEECCEEEEEEEEEcCCchhhhh
Q 028507 9 KYKLVFLGDQSVGKTSIIT-RFMYDK-----FDNTYQATIGI-DFLSKT--------MYLEDRTVRLQLWDTAGQERFRS 73 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~G~~~~~~ 73 (208)
.+||+++|..|||||+|+. ++..+. +...+.||.+. +.+... ..+++..+.+.||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4899999999999999995 555443 34556677642 322222 25678889999999999875 2
Q ss_pred chhhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCc-------------------ccCCC
Q 028507 74 LIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVS 133 (208)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~-------------------~~~~~ 133 (208)
+...+++++|++|+|||++++++|+.+. .|+..+.... +++|+++|+||+|+.+ .+.++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556789999999999999999999996 5988887665 5789999999999864 36788
Q ss_pred HHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 134 IEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
.++++.++++++++|++|||++|.|++++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999864
No 78
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-33 Score=189.08 Aligned_cols=174 Identities=36% Similarity=0.563 Sum_probs=156.4
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC---------CEEEEEEEEEcCCchhh
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE---------DRTVRLQLWDTAGQERF 71 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~ 71 (208)
|.......-+|.+.+|.+|+|||+|+.+++.++|......+.++++..+.+.++ +..+.+++|||+|+++|
T Consensus 1 m~~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF 80 (219)
T KOG0081|consen 1 MGDGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF 80 (219)
T ss_pred CCCccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHH
Confidence 444555566789999999999999999999999999999999999888877664 34678999999999999
Q ss_pred hhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEE
Q 028507 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE 150 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (208)
+++...+++.+.+++++||+++..+|.++..|+..+..+.- ++..|++++||.|+.+.++++.+++.+++.++|+|||+
T Consensus 81 RSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 81 RSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred HHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 99999999999999999999999999999999999977653 66779999999999999999999999999999999999
Q ss_pred eecCCCCChHHHHHHHHHHcCCCc
Q 028507 151 TSAKAGFNIKPLFRKIAAALPGME 174 (208)
Q Consensus 151 ~sa~~~~~i~~~~~~l~~~~~~~~ 174 (208)
+||-+|.|+++..+.|...+.+..
T Consensus 161 TSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred eccccCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999988876443
No 79
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=8.1e-31 Score=187.29 Aligned_cols=161 Identities=34% Similarity=0.527 Sum_probs=141.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
++||+++|++|+|||||++++.++.+...+.++.+. .....+..++..+.+.+||+||++.|..+++.+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 479999999999999999999999887777777663 3456667788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC-CeEEEeecCCCCChHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~l 166 (208)
||++++++++.+..|+..+.... ..+.|+++++||.|+.+.+....++...++..++ ++++++||+++.|++++|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999887643 3579999999999998777777778888888887 799999999999999999999
Q ss_pred HHHc
Q 028507 167 AAAL 170 (208)
Q Consensus 167 ~~~~ 170 (208)
...+
T Consensus 160 ~~~~ 163 (168)
T cd04177 160 VRQI 163 (168)
T ss_pred HHHH
Confidence 8755
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=1.5e-30 Score=184.49 Aligned_cols=160 Identities=43% Similarity=0.745 Sum_probs=141.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++|.+..+.....++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777788877777777777787889999999999999988899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
|++++.++..+..|+..+..... .++|+++|+||+|+. ......++...++...+++++++|+++|.|++++++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999999887753 679999999999986 3445567788888888999999999999999999999987
Q ss_pred Hc
Q 028507 169 AL 170 (208)
Q Consensus 169 ~~ 170 (208)
.+
T Consensus 160 ~~ 161 (161)
T cd01863 160 KI 161 (161)
T ss_pred hC
Confidence 53
No 81
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1.3e-30 Score=186.70 Aligned_cols=164 Identities=41% Similarity=0.682 Sum_probs=144.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988777788777777777888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC-CeEEEeecCCCCChHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~ 164 (208)
|++++.+++.+..|+..+..... .++|+++|+||+|+..+.....++...++...+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999999888887765543 369999999999998666667788888888887 6999999999999999999
Q ss_pred HHHHHcCCC
Q 028507 165 KIAAALPGM 173 (208)
Q Consensus 165 ~l~~~~~~~ 173 (208)
++.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999876543
No 82
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.4e-30 Score=184.14 Aligned_cols=163 Identities=40% Similarity=0.695 Sum_probs=145.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..++|+++|++|+|||||++++..+.+.....++.+.+.....+.+.+..+.+.+||++|+..+......++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45999999999999999999999888877777888777777788888888899999999999999888899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
|||++++.+++.+..|+..+.......+|+++|+||+|+.+.+++.......+.......++++|+++|.|++++|+++.
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999988877666799999999999987777776666777777778999999999999999999998
Q ss_pred HHc
Q 028507 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 754
No 83
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.98 E-value=1.1e-30 Score=184.49 Aligned_cols=153 Identities=18% Similarity=0.363 Sum_probs=129.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+.++..+.+...+.++. ..+ ...+.+++..+.+.+||++|.+. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 589999999999999999999988876654442 233 46678888888999999999864 24567899999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCc--ccCCCHHHHHHHHHhc-CCeEEEeecCCCCChHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE--KRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~~ 165 (208)
|++++++|+.+..|+..+..... .++|+++|+||.|+.. .+.+..++++.+++.. ++.+++|||+++.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999987754 5689999999999853 5677888888888776 489999999999999999999
Q ss_pred HHHH
Q 028507 166 IAAA 169 (208)
Q Consensus 166 l~~~ 169 (208)
+++.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9865
No 84
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=2e-30 Score=182.82 Aligned_cols=159 Identities=50% Similarity=0.869 Sum_probs=145.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||+||+..+......+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888888888888888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
|+++++++..+..|+..+........|+++++||+|+..+......+...++...+.+++++|++++.|++++|++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9999999999999999998877677999999999999756667788888888888999999999999999999999863
No 85
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=7.3e-31 Score=186.95 Aligned_cols=160 Identities=31% Similarity=0.518 Sum_probs=136.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-hhhchhhhccCCcEEEEEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~ 89 (208)
||+++|++|+|||||+++++.+.+...+.++.... ......+++..+.+.+||+||+.. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999999999999988876666665433 345566788888999999999885 3445667889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCC-CChHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG-FNIKPLFRKI 166 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~-~~i~~~~~~l 166 (208)
|++++++++.+..|+..+.... ..++|+++|+||+|+.+.+.+...++..++...+++++++|++++ .|++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999999887754 357999999999999777777888888899999999999999999 5999999999
Q ss_pred HHHcC
Q 028507 167 AAALP 171 (208)
Q Consensus 167 ~~~~~ 171 (208)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 87653
No 86
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=1.2e-30 Score=187.38 Aligned_cols=158 Identities=34% Similarity=0.549 Sum_probs=136.6
Q ss_pred EEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeC
Q 028507 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV 91 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 91 (208)
|+|+|++|+|||||+++|.++.+...+.++.... ....+..++..+.+.+|||+|++.+..+...++.++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999999999999999988777776543 345667788888999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHhcCC-eEEEeecCCCC
Q 028507 92 ASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETSAKAGF 157 (208)
Q Consensus 92 ~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 157 (208)
+++++++.+. .|+..+.... +++|+++|+||.|+.+.. .+...++..++...+. .++++||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999985 5888887654 579999999999986532 3667788889999987 99999999999
Q ss_pred ChHHHHHHHHHHcC
Q 028507 158 NIKPLFRKIAAALP 171 (208)
Q Consensus 158 ~i~~~~~~l~~~~~ 171 (208)
|++++|+.+++.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998763
No 87
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=4.6e-33 Score=182.14 Aligned_cols=170 Identities=39% Similarity=0.702 Sum_probs=156.8
Q ss_pred EEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeC
Q 028507 13 VFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV 91 (208)
Q Consensus 13 ~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 91 (208)
+++|.+++|||+|+-++..+.| .....++.++++.-+.+..++..+++++|||.|+++|++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 3789999999999999887776 456678899999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 92 ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 92 ~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
++..+|++.+.|+.+|..+....+.+.+++||+|+..++.+..++.+.++..+++|++++|+++|.|++-.|-.|++.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998888999999999999998999999999999999999999999999999999999999888
Q ss_pred CCccccccccc
Q 028507 172 GMETLSSTKQE 182 (208)
Q Consensus 172 ~~~~~~~~~~~ 182 (208)
...-+.++...
T Consensus 161 k~~~~~~~~~~ 171 (192)
T KOG0083|consen 161 KLKMGAPPEGE 171 (192)
T ss_pred HhccCCCCCCc
Confidence 77766655544
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.98 E-value=2.2e-30 Score=192.46 Aligned_cols=160 Identities=34% Similarity=0.482 Sum_probs=137.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhcc-CCcEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVV 87 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i~ 87 (208)
+||+++|++|+|||||+++|..+.+. ..+.++.+.+.....+.+++..+.+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 55666665566677778888888999999999872 23344556 8999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999999887654 2579999999999998777777788888888889999999999999999999999
Q ss_pred HHHcC
Q 028507 167 AAALP 171 (208)
Q Consensus 167 ~~~~~ 171 (208)
+..+.
T Consensus 159 ~~~~~ 163 (221)
T cd04148 159 VRQIR 163 (221)
T ss_pred HHHHH
Confidence 98885
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.98 E-value=3.7e-30 Score=184.80 Aligned_cols=159 Identities=29% Similarity=0.518 Sum_probs=136.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++|..+.+...+.++.. +.....+.+++..+.+.+||++|++.+..+...++..+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988776666654 344456777888888999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcCC-eEEEeecCC
Q 028507 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA 155 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 155 (208)
|++++.+++.+. .|+..+... .+++|+++|+||+|+.+. ..++.+++..++...++ .++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999985 677777655 577999999999998543 25667788888888886 899999999
Q ss_pred CCChHHHHHHHHHHc
Q 028507 156 GFNIKPLFRKIAAAL 170 (208)
Q Consensus 156 ~~~i~~~~~~l~~~~ 170 (208)
|.|++++|+.++..+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 90
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.4e-30 Score=186.21 Aligned_cols=162 Identities=23% Similarity=0.289 Sum_probs=138.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+-+||+++|.+|+|||||+++|+++.+. ..+.++.+..+....+.+++..+.+.+||++|.+.+..+...++.++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4589999999999999999999999997 788888887777677778888888999999999999888888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~ 165 (208)
+|||++++++++.+..|+..+... .++|+++|+||+|+.+.......+...++..+++ .++++||+++.|++++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999998888766332 3699999999999966554444455667777777 5799999999999999999
Q ss_pred HHHHcC
Q 028507 166 IAAALP 171 (208)
Q Consensus 166 l~~~~~ 171 (208)
|.+.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 998765
No 91
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=4.8e-30 Score=184.13 Aligned_cols=157 Identities=35% Similarity=0.558 Sum_probs=136.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+|++++|++|+|||||++++.++.+...+.++. .+.....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999998887777765 3555566778888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCc------------ccCCCHHHHHHHHHhcCC-eEEEeecCC
Q 028507 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAKA 155 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 155 (208)
|++++.+++.+. .|+..+.... +++|+++++||.|+.+ .+.+..+++..++...+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999974 6887777543 4699999999999864 346677888999999888 999999999
Q ss_pred CCChHHHHHHHHH
Q 028507 156 GFNIKPLFRKIAA 168 (208)
Q Consensus 156 ~~~i~~~~~~l~~ 168 (208)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998764
No 92
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.4e-29 Score=179.13 Aligned_cols=159 Identities=39% Similarity=0.608 Sum_probs=141.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|++|+|||||++++++..+...+.++.. +.........+..+.+.+||+||+..+......++..+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777777766 5556667777777899999999999999989999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
+++++++..+..|+..+..... ..+|+++|+||+|+...+.....++..++..++++++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999998877665 679999999999998767777888888888888999999999999999999999875
Q ss_pred c
Q 028507 170 L 170 (208)
Q Consensus 170 ~ 170 (208)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 3
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.8e-29 Score=179.26 Aligned_cols=161 Identities=33% Similarity=0.560 Sum_probs=140.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||++++....+...+.++... ........++..+.+.+||+||+..+......+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999999887777776653 33455667778889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
|++++.++..+..|+..+..... .++|+++|+||+|+.+.......+....+..++++++++|++++.|++++|+++.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999998877643 57999999999999775556677777888888899999999999999999999988
Q ss_pred HcC
Q 028507 169 ALP 171 (208)
Q Consensus 169 ~~~ 171 (208)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 94
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2.1e-29 Score=184.49 Aligned_cols=164 Identities=31% Similarity=0.489 Sum_probs=136.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|.+|+|||||+++|+++.+...+.++.. +.....+.+.+..+.+.+||++|+..+..+...++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776666654 4445567777777899999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCc-ccCCCHHHHHHHHH-hcCCeEEEeecCCCCChHHHHHHHH
Q 028507 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
++++.+++.+..|+..+..... .++|+++|+||+|+.. .+.+...+...... ..+..++++||++|.|++++|++|+
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999998877654 5799999999999865 34454544444433 4467899999999999999999999
Q ss_pred HHcCCCcc
Q 028507 168 AALPGMET 175 (208)
Q Consensus 168 ~~~~~~~~ 175 (208)
+.+.....
T Consensus 160 ~~~~~~~~ 167 (198)
T cd04147 160 RQANLPYN 167 (198)
T ss_pred HHhhcccc
Confidence 98764433
No 95
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1e-29 Score=184.22 Aligned_cols=164 Identities=37% Similarity=0.600 Sum_probs=153.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+||+++|.+|+|||+|..++.++.|...+.|+.+ +.+...+.+++..+.+.|+||+|++++..+...++..+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 579999999999999999999999999999999998 7778888889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
||+++++.||+.+..+++.|....+ ..+|+++|+||+|+...+.+..++.+.++..++++++|+||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999955444 668999999999999889999999999999999999999999999999999999
Q ss_pred HHHcCC
Q 028507 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
...+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 998765
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=5.1e-29 Score=179.85 Aligned_cols=164 Identities=35% Similarity=0.505 Sum_probs=140.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
.||+|+|++|+|||||+++|....+.....++..... ......++..+.+.+||+||++++...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999888776667665433 455566777788999999999999988888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
|+++..+++.+..|+..+..... .+.|+++++||+|+...+.....+...++..++.+++++|++++.|+.++|+++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999888876543 56899999999999766666666777778888899999999999999999999998
Q ss_pred HcCCCc
Q 028507 169 ALPGME 174 (208)
Q Consensus 169 ~~~~~~ 174 (208)
.+....
T Consensus 161 ~~~~~~ 166 (180)
T cd04137 161 EIEKVE 166 (180)
T ss_pred HHHHhc
Confidence 885443
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.7e-29 Score=180.33 Aligned_cols=155 Identities=21% Similarity=0.340 Sum_probs=123.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+++|++|+|||||+++|..+.+.. +.++.+.+.. .+.. ..+.+.+||++|++.+..++..++.++|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 467999999999999999999999877643 4566665543 2233 3478999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-----cCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----LNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~ 160 (208)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+. ...+++..++.. ..+.++++||++|.|+.
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 9999999999999888777765432 256899999999998542 345666555432 23478999999999999
Q ss_pred HHHHHHHH
Q 028507 161 PLFRKIAA 168 (208)
Q Consensus 161 ~~~~~l~~ 168 (208)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 98
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.5e-28 Score=182.19 Aligned_cols=172 Identities=30% Similarity=0.565 Sum_probs=148.9
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhcc
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|.....+..+||+++|++|+|||||++++..+.+...+.++.+.++....+..+++.+.+.+||++|++.+..++..++.
T Consensus 1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~ 80 (215)
T PTZ00132 1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI 80 (215)
T ss_pred CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence 56677788899999999999999999999988888888899988888888878888899999999999999888888899
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
.++++|+|||+++..++..+..|+..+.... .++|+++++||+|+.+. .... +...++...++.++++|++++.|++
T Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~ 157 (215)
T PTZ00132 81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFE 157 (215)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 9999999999999999999999999987664 56999999999998543 3333 3345667778899999999999999
Q ss_pred HHHHHHHHHcCCCcc
Q 028507 161 PLFRKIAAALPGMET 175 (208)
Q Consensus 161 ~~~~~l~~~~~~~~~ 175 (208)
+.|.+|++.+...+.
T Consensus 158 ~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 158 KPFLWLARRLTNDPN 172 (215)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999998865433
No 99
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.2e-28 Score=177.14 Aligned_cols=159 Identities=33% Similarity=0.546 Sum_probs=133.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
.||+|+|++|+|||||+++|..+.+...+.++.+... ...+.+++..+.+.+|||+|++.+..+...++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 6899999999999999999999998877777776443 345677788889999999999999888888899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcCC-eEEEeecCC
Q 028507 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA 155 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa~~ 155 (208)
|++++++++.+. .|+..+.... .++|+++|+||.|+.+. ..+...+.+.++...+. .++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998885 5777776543 56999999999998643 23445667777777775 899999999
Q ss_pred CCChHHHHHHHHHHc
Q 028507 156 GFNIKPLFRKIAAAL 170 (208)
Q Consensus 156 ~~~i~~~~~~l~~~~ 170 (208)
|.|++++|+++.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 100
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.2e-28 Score=178.88 Aligned_cols=160 Identities=33% Similarity=0.572 Sum_probs=134.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
.||+|+|++|+|||||+++|..+.+...+.++....+ ...+..++..+.+.+||++|++.+......++..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 6999999999999999999998888776666654333 345666777788999999999888777777789999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCc----------ccCCCHHHHHHHHHhcCC-eEEEeecCCCC
Q 028507 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE----------KRQVSIEEGEAKSRELNV-MFIETSAKAGF 157 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 157 (208)
|++++++++.+. .|+..+.... +++|+++|+||+|+.+ .+....++...++...+. .++++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 6888887654 4699999999999854 234556778888888885 89999999999
Q ss_pred ChHHHHHHHHHHcC
Q 028507 158 NIKPLFRKIAAALP 171 (208)
Q Consensus 158 ~i~~~~~~l~~~~~ 171 (208)
|++++|+++.+.+.
T Consensus 160 ~v~~~f~~l~~~~~ 173 (187)
T cd04129 160 GVDDVFEAATRAAL 173 (187)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998773
No 101
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=8e-30 Score=181.36 Aligned_cols=153 Identities=20% Similarity=0.277 Sum_probs=125.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
.|+++|++|+|||||+++|.++.+...+.++.+... . .++...+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~--~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--V--AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--E--EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999999888777778776543 2 233445789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCH----HHHHHHHHhcCCeEEEeecCC------CCChH
Q 028507 91 VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI----EEGEAKSRELNVMFIETSAKA------GFNIK 160 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~sa~~------~~~i~ 160 (208)
++++.++.....|+..+.... .++|+++|+||.|+...+.... .+...++.+.++.++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999999888888886443 5799999999999866554321 223445566678899999998 99999
Q ss_pred HHHHHHHH
Q 028507 161 PLFRKIAA 168 (208)
Q Consensus 161 ~~~~~l~~ 168 (208)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998864
No 102
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.3e-29 Score=180.80 Aligned_cols=157 Identities=22% Similarity=0.326 Sum_probs=123.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+++||+++|.+|+|||||++++..+.+. .+.++.+.+.. ..... .+.+.+||++|++.+..++..+++++|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 45799999999999999999999877764 45666665543 23333 478999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 160 (208)
+|||++++++++....++..+.... ..++|++||+||.|+.+.. ...+...... ...+.++++||++|.|+.
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999999888888775432 2568999999999986432 2333332221 123357789999999999
Q ss_pred HHHHHHHHHc
Q 028507 161 PLFRKIAAAL 170 (208)
Q Consensus 161 ~~~~~l~~~~ 170 (208)
++|++|.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 103
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.3e-28 Score=177.77 Aligned_cols=159 Identities=19% Similarity=0.327 Sum_probs=123.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+++||+++|.+|||||||++++..+.+. .+.|+.+.+.. .+... .+.+++||+||++.+..++..+++++|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999987775 35677665543 33343 478999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC-----CeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-----VMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~ 160 (208)
+|||+++++++.....++..+... ..+++|++|++||+|+.... ..++......... +.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999998887777766432 22569999999999986543 3344333332211 246689999999999
Q ss_pred HHHHHHHHHcCC
Q 028507 161 PLFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
++|++|.+.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999887643
No 104
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=5e-29 Score=180.36 Aligned_cols=161 Identities=24% Similarity=0.360 Sum_probs=127.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEE-CCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
..+||+++|.+|+|||||++++..+.+... .++.+.+.....+.. ++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998887644 566655554444443 335688999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH--h----cCCeEEEeecCCCCCh
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR--E----LNVMFIETSAKAGFNI 159 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~--~----~~~~~~~~sa~~~~~i 159 (208)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ....+...+.. . .+++++++||+++.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 9999999999988888887776543 256999999999998542 33344443332 1 1246899999999999
Q ss_pred HHHHHHHHHHcC
Q 028507 160 KPLFRKIAAALP 171 (208)
Q Consensus 160 ~~~~~~l~~~~~ 171 (208)
+++|++|.+.+.
T Consensus 159 ~~l~~~l~~~l~ 170 (183)
T cd04152 159 QEGLEKLYEMIL 170 (183)
T ss_pred HHHHHHHHHHHH
Confidence 999999998885
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1.5e-28 Score=175.64 Aligned_cols=156 Identities=22% Similarity=0.369 Sum_probs=125.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|.+|+|||||+++|.+..+.. +.+|.+.... .+... .+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999887643 5666654443 33333 4789999999999999899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC------CeEEEeecCCCCChHHHH
Q 028507 91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN------VMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~ 163 (208)
++++++++.+..|+..+.... ..+.|+++++||.|+.+ ....++++.++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999999888886543 24589999999999854 345566666554322 368899999999999999
Q ss_pred HHHHHHcCCC
Q 028507 164 RKIAAALPGM 173 (208)
Q Consensus 164 ~~l~~~~~~~ 173 (208)
++|.+.+.+.
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9999877544
No 106
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.97 E-value=3.2e-28 Score=177.63 Aligned_cols=148 Identities=21% Similarity=0.345 Sum_probs=126.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC-----CEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
+||+++|.+|+|||||++++..+.+...+.++.+.+.....+.++ +..+.+.|||++|++.|..+...+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888888877766666553 467899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCcccCCCHH----HHHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTER-------------------GSDVIIVLVGNKTDLVEKRQVSIE----EGEAKS 141 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-------------------~~~~piivv~nK~D~~~~~~~~~~----~~~~~~ 141 (208)
+|+|||++++++++.+..|+..+.... ..++|+++|+||.|+.+++..... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999997632 246999999999999776554443 345668
Q ss_pred HhcCCeEEEeecCCCC
Q 028507 142 RELNVMFIETSAKAGF 157 (208)
Q Consensus 142 ~~~~~~~~~~sa~~~~ 157 (208)
.+.+++.++.++.+..
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8899999999988655
No 107
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=3.3e-28 Score=174.07 Aligned_cols=157 Identities=36% Similarity=0.584 Sum_probs=131.1
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++|.++.+...+.++.. +........++..+.+.+||+||++.+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999998666666654 334455667788889999999999988888888889999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcccC-----------CCHHHHHHHHHhcCC-eEEEeecCCC
Q 028507 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-----------VSIEEGEAKSRELNV-MFIETSAKAG 156 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~sa~~~ 156 (208)
|++++.++.... .|+..+.... .++|+++|+||+|+.+... +...+...++..+++ .++++|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999988864 5666666544 4799999999999976542 346677778888887 9999999999
Q ss_pred CChHHHHHHHHH
Q 028507 157 FNIKPLFRKIAA 168 (208)
Q Consensus 157 ~~i~~~~~~l~~ 168 (208)
.|+.++|++|.+
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 108
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=4.1e-29 Score=176.89 Aligned_cols=152 Identities=22% Similarity=0.348 Sum_probs=118.1
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|+|||||++++..+.+. .+.|+.+.+.. .+... .+.+.+||++|++++..++..+++++|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999887775 45666665442 23333 478999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCCCChHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 163 (208)
|++++.+++....++..+... ...+.|+++++||+|+.+.. ...+...... ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988877776433 22468999999999985432 2223222221 123467899999999999999
Q ss_pred HHHHH
Q 028507 164 RKIAA 168 (208)
Q Consensus 164 ~~l~~ 168 (208)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 109
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=3.7e-28 Score=174.30 Aligned_cols=155 Identities=23% Similarity=0.346 Sum_probs=123.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+..++|+++|++|+|||||+++|.+..+ ....++.+.. ...+.+++ +.+.+||+||++.+..++..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ--IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 5679999999999999999999997754 3445555433 33344443 77999999999998888899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 160 (208)
+|||++++.++.....|+..+... ...++|+++|+||+|+.+.. ..+++..++. ..+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 999999999999888888877543 23579999999999986533 3445554443 235689999999999999
Q ss_pred HHHHHHHH
Q 028507 161 PLFRKIAA 168 (208)
Q Consensus 161 ~~~~~l~~ 168 (208)
++|+++..
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 110
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=1.2e-27 Score=171.59 Aligned_cols=145 Identities=69% Similarity=1.066 Sum_probs=130.9
Q ss_pred CcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc
Q 028507 32 DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER 111 (208)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 111 (208)
+.|...+.+|.+.++....+.++++.+.+.||||+|++.+..++..+++++|++|+|||++++++|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45677888999989988888889999999999999999999999999999999999999999999999999999997766
Q ss_pred CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHHcCCCccc
Q 028507 112 GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176 (208)
Q Consensus 112 ~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 176 (208)
..++|+++|+||+|+.+.+.+...++..++..+++.++++||++|.|+.++|++|++.+++....
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 66799999999999977777788888888888899999999999999999999999999765543
No 111
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=6.7e-28 Score=174.18 Aligned_cols=159 Identities=19% Similarity=0.318 Sum_probs=122.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+++||+++|++|+|||||++++..+.+.. +.++.+.+.. .+... .+.+.+||++|++.+..++..+++++|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346999999999999999999998877754 5566665443 33333 478999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-----cCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----LNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~ 160 (208)
+|||+++++++.....++..+... ...++|++||+||.|+.+.. ...+....... ..+.++++||++|.|+.
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999888777776432 22458999999999985432 22333222211 12357799999999999
Q ss_pred HHHHHHHHHcCC
Q 028507 161 PLFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
++|++|.+.+.+
T Consensus 168 e~~~~l~~~i~~ 179 (182)
T PTZ00133 168 EGLDWLSANIKK 179 (182)
T ss_pred HHHHHHHHHHHH
Confidence 999999987643
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.3e-27 Score=170.39 Aligned_cols=159 Identities=26% Similarity=0.378 Sum_probs=123.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|.+|+|||||+++|..+.+...+..+. +.......+++..+.+.+||++|...+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999999999999998865533322 122333445667789999999999888777777789999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC--HHHHHHHHHhcC--CeEEEeecCCCCChHHHHH
Q 028507 90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRELN--VMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 90 d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~ 164 (208)
|++++++++.+. .|+..+.... .++|+++|+||+|+.+..... ..+....+..++ ..++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 6777776654 479999999999997655421 233333333332 3899999999999999999
Q ss_pred HHHHHcC
Q 028507 165 KIAAALP 171 (208)
Q Consensus 165 ~l~~~~~ 171 (208)
.+...+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9988764
No 113
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=3.7e-27 Score=169.27 Aligned_cols=154 Identities=22% Similarity=0.386 Sum_probs=120.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.++|+++|++|+|||||++++..+.+.. ..++.+.+. .....+. +.+.+||+||++.+...+..++.++|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999887764 455555443 2334443 789999999999999989999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HhcCCeEEEeecCCCCChHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~ 161 (208)
|+|+++++++.....++..+..... .++|+++++||+|+.+. ...++..... ...+++++++||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 9999999888887777777654432 46999999999998542 2333332222 23456799999999999999
Q ss_pred HHHHHHH
Q 028507 162 LFRKIAA 168 (208)
Q Consensus 162 ~~~~l~~ 168 (208)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999975
No 114
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=6.1e-28 Score=171.48 Aligned_cols=167 Identities=32% Similarity=0.522 Sum_probs=149.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC-CEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
+..+|++|||..++|||+|+..+..+.|+..+.|+.- +-+...+.++ ++.+.+.+|||+|+++|..++...++++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3568999999999999999999999999999999987 6667777884 9999999999999999999888889999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcCC-eEEEe
Q 028507 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIET 151 (208)
Q Consensus 86 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (208)
+++|++++|++++++ ..|+.++..++ +++|+++||+|.|+.+. ..+..++....+++.|+ .|+++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999995 78999998777 78999999999999742 35778899999999995 89999
Q ss_pred ecCCCCChHHHHHHHHHHcCCCcc
Q 028507 152 SAKAGFNIKPLFRKIAAALPGMET 175 (208)
Q Consensus 152 sa~~~~~i~~~~~~l~~~~~~~~~ 175 (208)
||++..|++++|+..+........
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999998888765544
No 115
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=1e-29 Score=174.46 Aligned_cols=169 Identities=36% Similarity=0.567 Sum_probs=156.7
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCc
Q 028507 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
..-..-+|++|+|..++||||+|++++.+-|-..+..+++.++......+.+..++..+||++|+++|......+++++.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcccc
Confidence 33456799999999999999999999999998899999999888888888777788999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 028507 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 163 (208)
+-++||+-+|..+|+.+..|++.+....+ .+|.++|-||+|+.+...+...+++..++.+.+.++.+|++...|+..+|
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence 99999999999999999999999988775 59999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 028507 164 RKIAAALPGM 173 (208)
Q Consensus 164 ~~l~~~~~~~ 173 (208)
.+|++.+...
T Consensus 174 ~YLaeK~~q~ 183 (246)
T KOG4252|consen 174 AYLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHHH
Confidence 9999988544
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=1.6e-27 Score=169.05 Aligned_cols=152 Identities=17% Similarity=0.247 Sum_probs=117.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+|+++|++|+|||||+++|.+..+ ...+.++.+.... .+.. ..+.+.+||+||+..+..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998763 4455666654332 2333 3478999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCCCChHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~ 161 (208)
|++++.++.....|+..+.... ..++|+++|+||+|+.+... ..+...... ...+.++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999888888887775532 25799999999999865332 222222221 1234689999999999999
Q ss_pred HHHHHHH
Q 028507 162 LFRKIAA 168 (208)
Q Consensus 162 ~~~~l~~ 168 (208)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 117
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=3.6e-27 Score=168.22 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=119.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
+|+++|++|||||||+++|.++ +...+.++.+... ..+...+ +.+.+||+||+..+..++..+++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 6566677766542 3444443 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHH------HHHHhc--CCeEEEeecCCC-----
Q 028507 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGE------AKSREL--NVMFIETSAKAG----- 156 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~------~~~~~~--~~~~~~~sa~~~----- 156 (208)
++++.++..+..|+..+..... .++|+++|+||.|+...+. ..+.. .++.+. .+.++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999999988876532 5699999999999865442 22221 222222 357888999998
Q ss_pred -CChHHHHHHHHH
Q 028507 157 -FNIKPLFRKIAA 168 (208)
Q Consensus 157 -~~i~~~~~~l~~ 168 (208)
.|+.+.|+||..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999964
No 118
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=1.3e-26 Score=168.64 Aligned_cols=157 Identities=22% Similarity=0.321 Sum_probs=124.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|++|+|||||++++.++.+. .+.++.+.. ...+.+.+ +.+.+||+||+..+...+..+++.+|+++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~ii 91 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIV 91 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999987764 344554432 23444554 67999999999998888888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHh----------------cCCeEE
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE----------------LNVMFI 149 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 149 (208)
+|+|+++++++.....++..+..... .+.|+++++||+|+.. .....+.+..+.. ....++
T Consensus 92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 99999999888888888887765432 5699999999999854 4455666655542 124689
Q ss_pred EeecCCCCChHHHHHHHHHHc
Q 028507 150 ETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~ 170 (208)
++||++|+|+.++|++|.+.+
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EeEecCCCChHHHHHHHHhhC
Confidence 999999999999999998753
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=4.7e-27 Score=166.39 Aligned_cols=152 Identities=25% Similarity=0.424 Sum_probs=117.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
+|+++|++|+|||||+++|.++.+... .++.+.+. ..+... ..+.+.+||++|+..+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999998887543 45555443 223332 34789999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHH------HHhcCCeEEEeecCCCCChHHHH
Q 028507 91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK------SRELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~sa~~~~~i~~~~ 163 (208)
++++.++.....|+..+..... .+.|+++|+||+|+.... ...+.... +...+++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999988988888887755432 569999999999985422 22333222 11234579999999999999999
Q ss_pred HHHHH
Q 028507 164 RKIAA 168 (208)
Q Consensus 164 ~~l~~ 168 (208)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1.3e-26 Score=165.28 Aligned_cols=152 Identities=23% Similarity=0.397 Sum_probs=117.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
+|+++|++|+|||||+++|.+... ...+.++.+... ..+.+++ ..+.+||+||++.+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999986432 223344444443 3344443 689999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-------cCCeEEEeecCCC
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-------LNVMFIETSAKAG 156 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~ 156 (208)
+++|+|+++++++.....++..+.... ..++|+++++||+|+.+. ....+...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999888888888887775543 256999999999998553 333444444332 2458999999999
Q ss_pred CChHHHHHHHHH
Q 028507 157 FNIKPLFRKIAA 168 (208)
Q Consensus 157 ~~i~~~~~~l~~ 168 (208)
.|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999865
No 121
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.9e-26 Score=176.21 Aligned_cols=141 Identities=21% Similarity=0.373 Sum_probs=122.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC-------------CEEEEEEEEEcCCchhhh
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-------------DRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~~~~ 72 (208)
....+||+|+|..|||||||+++|..+.+...+.++.+.++....+.++ +..+.+.|||++|++.|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 4578999999999999999999999999988888998888776666654 246889999999999999
Q ss_pred hchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCccc---C---CCH
Q 028507 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG------------SDVIIVLVGNKTDLVEKR---Q---VSI 134 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~piivv~nK~D~~~~~---~---~~~ 134 (208)
.++..++++++++|+|||++++.+++.+..|+..+..... .++|++||+||+|+.+.+ . ...
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 9999999999999999999999999999999999987632 358999999999996543 2 357
Q ss_pred HHHHHHHHhcCC
Q 028507 135 EEGEAKSRELNV 146 (208)
Q Consensus 135 ~~~~~~~~~~~~ 146 (208)
++++.++...++
T Consensus 178 e~a~~~A~~~g~ 189 (334)
T PLN00023 178 DAARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHHcCC
Confidence 899999999875
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=9.4e-27 Score=164.55 Aligned_cols=151 Identities=23% Similarity=0.333 Sum_probs=119.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|.+|+|||||++++.+..+ ....++.+... ..+.+.. +.+.+||+||+..+...+..++..+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998874 34445554433 3333443 679999999999999899999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCCCChHHHHH
Q 028507 91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
+++++++.....++..+.... ..+.|+++++||+|+.... ..++...... ...++++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999999888888776543 3579999999999986543 2333333332 2345899999999999999999
Q ss_pred HHHH
Q 028507 165 KIAA 168 (208)
Q Consensus 165 ~l~~ 168 (208)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=2.3e-26 Score=162.61 Aligned_cols=151 Identities=21% Similarity=0.319 Sum_probs=113.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
||+++|++++|||||+++|..+.+.. ..++.+.+.. .+... .+.+.+||+||+..+..++..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998777643 3455444432 33333 3689999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCCCChHHHHH
Q 028507 91 VASRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~-~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
++++.++.....++..+.. ....++|+++|+||+|+.+.. ...+...... ..+++++++||+++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998887776666655433 222469999999999986433 2223222211 1234799999999999999999
Q ss_pred HHHH
Q 028507 165 KIAA 168 (208)
Q Consensus 165 ~l~~ 168 (208)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9975
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=1.2e-25 Score=161.39 Aligned_cols=157 Identities=24% Similarity=0.360 Sum_probs=125.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.++++|+++|+.|+|||||++++..+.... ..||.+.. ...+...+ +.+.+||.+|+..++..|+.++.++|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 678999999999999999999998765433 55665544 34455565 67999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh------cCCeEEEeecCCCCCh
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------LNVMFIETSAKAGFNI 159 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i 159 (208)
||+|+++++.+......+..+.... ..++|++|++||.|+.+. ...+++...... ..+.++.+|+.+|+|+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 9999999988888877777765532 257999999999998653 344555544332 2357999999999999
Q ss_pred HHHHHHHHHHc
Q 028507 160 KPLFRKIAAAL 170 (208)
Q Consensus 160 ~~~~~~l~~~~ 170 (208)
.+.++||.+.+
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999998763
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=1.6e-25 Score=162.17 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=120.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|.+|+|||||++++.++.+.. +.++.+.+ ...+.+.+ +++.+||+||+..+...+..++.++|++|
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 456999999999999999999999877643 34444332 23334444 67999999999999989999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh------------cCCeEEEeec
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA 153 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa 153 (208)
+|+|+++++++.....++..+.... ..++|+++|+||+|+.. ..+.+++...... ....++++||
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 9999999998888877777765432 25689999999999853 3445555444321 1236999999
Q ss_pred CCCCChHHHHHHHHHH
Q 028507 154 KAGFNIKPLFRKIAAA 169 (208)
Q Consensus 154 ~~~~~i~~~~~~l~~~ 169 (208)
+++.|++++++||...
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999865
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=1.7e-25 Score=159.60 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=109.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh---------hchhhhcc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYIR 80 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~~ 80 (208)
.+|+++|.+|+|||||+++|.+..+.....+..+.+........+ .+++.||||||+.... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 379999999999999999999887754333333333333333333 3789999999974211 00111123
Q ss_pred CCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 81 DSSVAVVVYDVASRQS--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
..|++|+|+|++++.+ ++....|+..+.... .+.|+++|+||+|+.+...... ...+....+.+++++||++|.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 3689999999997654 355567777776543 3699999999999976544322 4445555567899999999999
Q ss_pred hHHHHHHHHHHc
Q 028507 159 IKPLFRKIAAAL 170 (208)
Q Consensus 159 i~~~~~~l~~~~ 170 (208)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 127
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=1.7e-25 Score=174.52 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=124.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-------hhhchhhhccCC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS 82 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 82 (208)
-.|+|||.||||||||+++|+..+......+.++.......+.+.+ ...+.+||+||..+ +...+..++..+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 3589999999999999999998765444445555565555555532 24699999999642 222334456789
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
+++|+|+|++++++++.+..|..++..+.. .++|+++|+||+|+.+.........+.++...+++++++||+++.|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999988788999999998877643 468999999999997655444444555556667899999999999999
Q ss_pred HHHHHHHHHcCC
Q 028507 161 PLFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
+++++|.+.+.+
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=3.1e-25 Score=156.37 Aligned_cols=152 Identities=24% Similarity=0.376 Sum_probs=120.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
.|+++|++|+|||||+++|.+..+...+.++.+..... +...+ +.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37999999999999999999999888888877765543 33333 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HhcCCeEEEeecCCCCChHHHHH
Q 028507 91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
+++++++.....++..+.... ..++|+++|+||.|+.+... ..+..... ....++++++|++++.|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 999988888877777765432 25689999999999865432 22222121 12235889999999999999999
Q ss_pred HHHH
Q 028507 165 KIAA 168 (208)
Q Consensus 165 ~l~~ 168 (208)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9975
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=4.8e-25 Score=158.90 Aligned_cols=155 Identities=18% Similarity=0.254 Sum_probs=111.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc-------CCCCCCC------ccceeeEEE--EEEE---CCEEEEEEEEEcCCchhhh
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK-------FDNTYQA------TIGIDFLSK--TMYL---EDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~-------~~~~~~~------~~~~~~~~~--~~~~---~~~~~~~~i~D~~G~~~~~ 72 (208)
+|+++|++++|||||+++|++.. +...+.+ ..+.+.... .+.+ ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999998642 1111111 112222222 2222 5567889999999999999
Q ss_pred hchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC---eEE
Q 028507 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---MFI 149 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 149 (208)
..+..++..+|++|+|||+++..+......|.... ..++|+++|+||+|+.+.. .......++..+++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999876666555554322 2358999999999985422 12223444555555 489
Q ss_pred EeecCCCCChHHHHHHHHHHcC
Q 028507 150 ETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
++||++|.|++++|++|...++
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhCC
Confidence 9999999999999999998763
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=3e-25 Score=158.58 Aligned_cols=158 Identities=17% Similarity=0.154 Sum_probs=113.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh----hhhchhh---hccCCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPS---YIRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~---~~~~~d 83 (208)
+|+++|.+|+|||||+++|.+........+..+.+.....+.+.+. ..+.+|||||+.. ...+... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976543222222233332333333332 4799999999642 1122222 245699
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-cCCeEEEeecCCCCCh
Q 028507 84 VAVVVYDVASR-QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159 (208)
Q Consensus 84 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i 159 (208)
++++|+|++++ ++++.+..|++.+..... ...|+++|+||+|+.+.... ......+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888899888876542 36899999999998765543 3334444444 3678999999999999
Q ss_pred HHHHHHHHHHc
Q 028507 160 KPLFRKIAAAL 170 (208)
Q Consensus 160 ~~~~~~l~~~~ 170 (208)
+++|++|.+.+
T Consensus 160 ~~l~~~i~~~~ 170 (170)
T cd01898 160 DELLRKLAELL 170 (170)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=1.3e-24 Score=152.89 Aligned_cols=158 Identities=27% Similarity=0.427 Sum_probs=127.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+...++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999999888778888888888777777777668899999999999988888888999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 89 YDVASR-QSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 89 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|.... .++.... .++..+......+.|+++++||.|+.... ........+......+++++||.++.|+.++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999866 5666544 66666665554478999999999997644 23333333334445689999999999999999987
Q ss_pred H
Q 028507 167 A 167 (208)
Q Consensus 167 ~ 167 (208)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=7e-25 Score=161.34 Aligned_cols=156 Identities=20% Similarity=0.231 Sum_probs=114.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh---------hhhchhhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~ 78 (208)
..++|+|+|++|+|||||++++++..+.....+..+.+.....+.+.+. ..+.+|||||... +.... ..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 4589999999999999999999988754333333333444444444443 3799999999732 22222 23
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
+..+|++++|+|++++.++.....|...+......++|+++|+||+|+.+..... ......+.+++++||+++.|
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~g 192 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGEG 192 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCCC
Confidence 5689999999999998888877777777765554568999999999986644321 33445567899999999999
Q ss_pred hHHHHHHHHHHc
Q 028507 159 IKPLFRKIAAAL 170 (208)
Q Consensus 159 i~~~~~~l~~~~ 170 (208)
+++++++|...+
T Consensus 193 i~~l~~~L~~~~ 204 (204)
T cd01878 193 LDELLEAIEELL 204 (204)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=4.8e-24 Score=152.87 Aligned_cols=155 Identities=21% Similarity=0.334 Sum_probs=116.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|++|+|||||++++.+..+. ...++.+.+. ..+...+ ..+.+||++|+..+...+..++..+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999987653 2344544333 2334444 67999999999988888888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC-----CeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-----VMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~ 160 (208)
+|+|++++.++.....++..+... ...++|+++++||.|+.+... ..+......... ..++++||++|+|++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 999999988888877776666443 235699999999999865332 222222221111 247899999999999
Q ss_pred HHHHHHHH
Q 028507 161 PLFRKIAA 168 (208)
Q Consensus 161 ~~~~~l~~ 168 (208)
++|+||.+
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999975
No 134
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=2.1e-24 Score=153.23 Aligned_cols=152 Identities=20% Similarity=0.148 Sum_probs=105.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc---CCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+.|+++|.+|+|||||+++|.+.. +.....++.+.+.....+.+.. ...+.+|||||++++......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 478999999999999999999643 3333334444444444455542 357999999999988776777788999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHh---cCCeEEEeecCCCCC
Q 028507 87 VVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRE---LNVMFIETSAKAGFN 158 (208)
Q Consensus 87 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~sa~~~~~ 158 (208)
+|+|+++ +++.+.+ ..+.. .+ ..|+++++||+|+.+... ....+....... .+.+++++|++++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~-~~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILEL-LG-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHH-hC-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999986 3333222 22221 11 248999999999865421 112333333333 357999999999999
Q ss_pred hHHHHHHHHH
Q 028507 159 IKPLFRKIAA 168 (208)
Q Consensus 159 i~~~~~~l~~ 168 (208)
++++++.+..
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 135
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.93 E-value=8.5e-24 Score=141.74 Aligned_cols=175 Identities=24% Similarity=0.313 Sum_probs=145.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC--CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh-hhchhhhccCCcE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSLIPSYIRDSSV 84 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~d~ 84 (208)
+-.|++++|..++|||+++.+|+.+.. ...+.+|....+....-...+..-.+.++||.|.... ..+-+.++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 457999999999999999999986554 3455666653333333333444557999999998877 5567788999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 163 (208)
+++||+..+++||..+.-+-..|.+... ..+||++++||.|+.+++++..+.++.|+..-.+.++++++.+...+-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 9999999999999998887777777654 669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCccccccccc
Q 028507 164 RKIAAALPGMETLSSTKQE 182 (208)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~ 182 (208)
..+...+...+.++.....
T Consensus 168 ~~l~~rl~~pqskS~Fpl~ 186 (198)
T KOG3883|consen 168 TYLASRLHQPQSKSTFPLS 186 (198)
T ss_pred HHHHHhccCCcccccCcch
Confidence 9999999877777665554
No 136
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=156.11 Aligned_cols=166 Identities=40% Similarity=0.610 Sum_probs=135.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+..+||+++|++|+|||||+++|.++.+...+.++.+..............+++.+|||+|++++..++..++.++++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 34599999999999999999999999999999988887777777766665789999999999999999999999999999
Q ss_pred EEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHhc---CCeEEE
Q 028507 87 VVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSREL---NVMFIE 150 (208)
Q Consensus 87 ~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~ 150 (208)
++||.++. ...+....|+..+........|+++++||+|+.... .............. ...+++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 99999984 455557888888887776679999999999997653 22222222222222 234899
Q ss_pred eecC--CCCChHHHHHHHHHHcCC
Q 028507 151 TSAK--AGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 151 ~sa~--~~~~i~~~~~~l~~~~~~ 172 (208)
+|++ ++.++.++|..+...+..
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHH
Confidence 9999 999999999998888753
No 137
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.3e-24 Score=149.67 Aligned_cols=160 Identities=21% Similarity=0.325 Sum_probs=131.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..++++|+++|..++||||++++|..+.+... .||.+... ..+.+.+ +.+++||.+|+++++..|..++.+.+++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV--E~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV--ETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce--eEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence 45789999999999999999999998887665 77776544 4444444 7899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-----cCCeEEEeecCCCCCh
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----LNVMFIETSAKAGFNI 159 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i 159 (208)
|||+|.+|++.+......+..+..+.. .+.|+++.+||.|+..+.. ..++...... ....+..++|.+|+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 999999999999998888888766654 6799999999999866443 3444333332 2457899999999999
Q ss_pred HHHHHHHHHHcCC
Q 028507 160 KPLFRKIAAALPG 172 (208)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (208)
.+.++|+...+..
T Consensus 167 ~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 167 YEGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 138
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.92 E-value=1.4e-23 Score=142.32 Aligned_cols=159 Identities=23% Similarity=0.362 Sum_probs=124.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.++++|.++|..|+||||++++|.+... ....|+.+ +....+.+++ +.+++||.+|+..++..|+.|+..+|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 3589999999999999999999997763 33445554 3344444544 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHH------HHHHHHhcCCeEEEeecCCCCCh
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEE------GEAKSRELNVMFIETSAKAGFNI 159 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~------~~~~~~~~~~~~~~~sa~~~~~i 159 (208)
+|+|.+|+..++.....++.+..... -+.|+++++||.|+..+- +.++ ....++...++++.||+.+|+++
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l--~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGAL--SLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcccc--CHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 99999999888887666666544322 458999999999986432 2222 23334556789999999999999
Q ss_pred HHHHHHHHHHcCC
Q 028507 160 KPLFRKIAAALPG 172 (208)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (208)
.+-+.|+...+.+
T Consensus 167 ~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 167 LEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887754
No 139
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=159.15 Aligned_cols=162 Identities=23% Similarity=0.251 Sum_probs=108.6
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCC-----------ch
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QE 69 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~ 69 (208)
|..+.....++|+++|.+|+|||||+++|.+..+.....++.+.. ...+.+. .+.+||||| .+
T Consensus 1 ~~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~ 74 (201)
T PRK04213 1 MFETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQE 74 (201)
T ss_pred CCcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHH
Confidence 444455567999999999999999999999887765555544332 3333332 589999999 34
Q ss_pred hhhhchhhhc----cCCcEEEEEEeCCChhhH-H---------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHH
Q 028507 70 RFRSLIPSYI----RDSSVAVVVYDVASRQSF-L---------NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (208)
Q Consensus 70 ~~~~~~~~~~----~~~d~~i~v~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~ 135 (208)
.+...+..++ ..++++++|+|.++...+ + .-...+..+. ..++|+++|+||+|+.+.. ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~ 148 (201)
T PRK04213 75 KIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DE 148 (201)
T ss_pred HHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HH
Confidence 5555544444 346788889988643211 0 0011122222 2469999999999986543 23
Q ss_pred HHHHHHHhcCC---------eEEEeecCCCCChHHHHHHHHHHcCCCcc
Q 028507 136 EGEAKSRELNV---------MFIETSAKAGFNIKPLFRKIAAALPGMET 175 (208)
Q Consensus 136 ~~~~~~~~~~~---------~~~~~sa~~~~~i~~~~~~l~~~~~~~~~ 175 (208)
....++..+++ +++++||++| |+++++++|.+.+.+..+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 149 VLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred HHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 34445555554 5899999999 999999999998865544
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.9e-24 Score=150.17 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=99.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch-----hhhhchhhhccCCcEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----RFRSLIPSYIRDSSVA 85 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~~ 85 (208)
||+++|++|+|||||+++|.+..+. +.++.+. .+. -.+|||||.. .+..+.. .++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence 8999999999999999999987652 2222221 111 2689999972 3333333 47899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~ 164 (208)
|+|||++++.++.. ..|... . ..|+++|+||+|+.+ .....++...++...+. +++++||+++.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~----~--~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASI----F--VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHh----c--cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999888755 233322 1 249999999999864 33445666777777776 899999999999999999
Q ss_pred HHH
Q 028507 165 KIA 167 (208)
Q Consensus 165 ~l~ 167 (208)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 141
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=1.2e-23 Score=164.10 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=118.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-------hhhchhhhccCC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS 82 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 82 (208)
-.|+|+|.+++|||||+++|...+......+.++.......+.+.+ ...+.|||+||..+ ....+...+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4689999999999999999998765444444444555555555543 25799999999742 122233346689
Q ss_pred cEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCC
Q 028507 83 SVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (208)
Q Consensus 83 d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 157 (208)
+++|+|+|+++. ++++.+..|.+++..+.. .+.|+++|+||+|+.+... .....+.+...++.+++++||+++.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999976 678888888887766532 4689999999999976533 2334455555667899999999999
Q ss_pred ChHHHHHHHHHHc
Q 028507 158 NIKPLFRKIAAAL 170 (208)
Q Consensus 158 ~i~~~~~~l~~~~ 170 (208)
++++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=8.9e-24 Score=150.66 Aligned_cols=158 Identities=18% Similarity=0.163 Sum_probs=109.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC-CEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
.|+|+|.+|+|||||+++|....+.....++.+.+.....+... .....+.+|||||+..+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999888766544444434333333333 13467999999999998888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCH-HHHHHHHH------hcCCeEEEeecCCCCChHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI-EEGEAKSR------ELNVMFIETSAKAGFNIKPL 162 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~sa~~~~~i~~~ 162 (208)
|+++...... ...+..+.. .++|+++|+||+|+.+...... ........ ...++++++|++++.|+.++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 9987432111 112222222 3589999999999864321111 11111111 11358999999999999999
Q ss_pred HHHHHHHcCC
Q 028507 163 FRKIAAALPG 172 (208)
Q Consensus 163 ~~~l~~~~~~ 172 (208)
+++|.+...+
T Consensus 158 ~~~l~~~~~~ 167 (168)
T cd01887 158 LEAILLLAEK 167 (168)
T ss_pred HHHHHHhhhc
Confidence 9999887643
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=1.8e-23 Score=147.56 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=111.6
Q ss_pred EEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc------hhhhc--cCCcEE
Q 028507 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVA 85 (208)
Q Consensus 14 vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~ 85 (208)
|+|.+|+|||||++++.+..+.....++++.+.....+.+++ ..+.+|||||+..+... ...++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998875555556666666666666665 57999999998776542 34445 499999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
|+|+|+++++... .+...+.. .++|+++|+||+|+.+...... ....++..++.+++++|+.++.|+.+++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998764432 33333332 3589999999999976554433 345666777889999999999999999999
Q ss_pred HHHHc
Q 028507 166 IAAAL 170 (208)
Q Consensus 166 l~~~~ 170 (208)
|....
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 98764
No 144
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=4.5e-23 Score=143.78 Aligned_cols=153 Identities=48% Similarity=0.780 Sum_probs=122.1
Q ss_pred EEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCC
Q 028507 14 FLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA 92 (208)
Q Consensus 14 vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||+..+.......++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 44555555 6777777777777789999999999988887788899999999999999
Q ss_pred ChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCcccCCCHHH-HHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 93 SRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 93 ~~~s~~~~~~~~-~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
++.+...+..|+ ..........+|+++++||+|+.......... ........+.+++++|+.++.++.+++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 998888887763 33333445679999999999987655433322 3344455567999999999999999999885
No 145
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=2.7e-24 Score=149.27 Aligned_cols=148 Identities=23% Similarity=0.295 Sum_probs=110.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh------chhhh--ccC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSY--IRD 81 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~--~~~ 81 (208)
++|+++|.||+|||||+|+|++.+......|.++.+.....+...+ ..+.++|+||...+.. ....+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999987767778888888777888877 5699999999543322 22223 368
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 028507 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 161 (208)
.|++|+|+|+++.+.-. +....+.. .++|+++++||+|..+.+.... ....+...++++++.+||++++|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999998653322 33333333 3499999999999987766543 35677778899999999999999999
Q ss_pred HHHHH
Q 028507 162 LFRKI 166 (208)
Q Consensus 162 ~~~~l 166 (208)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98875
No 146
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=3.9e-23 Score=162.54 Aligned_cols=153 Identities=21% Similarity=0.201 Sum_probs=113.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch---------hhhhchhhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSYI 79 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~~ 79 (208)
.++|+++|.+|+|||||+|+|++..+.....+.++.++....+.+.++ ..+.+|||+|.. .|.... ..+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 389999999999999999999988754444455556666666666432 479999999972 233322 247
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 028507 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 159 (208)
.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.+... ..... ....+++++||++|.|+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCCCH
Confidence 8999999999999988877776666666554445689999999999864322 11111 12346899999999999
Q ss_pred HHHHHHHHHH
Q 028507 160 KPLFRKIAAA 169 (208)
Q Consensus 160 ~~~~~~l~~~ 169 (208)
++++++|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 147
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=5.4e-24 Score=174.22 Aligned_cols=185 Identities=22% Similarity=0.209 Sum_probs=131.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch----------hhhhch-
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLI- 75 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~- 75 (208)
..++|+++|.+|+|||||+++|++... .....++++.+.....+..++. .+.+|||||.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 458999999999999999999998765 3445566666666666667764 47899999952 222222
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC--HHHHHHH-HHhcCCeEEEee
Q 028507 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAK-SRELNVMFIETS 152 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~-~~~~~~~~~~~s 152 (208)
..+++.+|++|+|+|++++.++..+. ++..+. ..++|+++|+||+|+.+..... ..+.... .....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23578999999999999877766653 333332 2468999999999996532111 1112211 222346899999
Q ss_pred cCCCCChHHHHHHHHHHcCCCccccccccccccccccccccCCCCC
Q 028507 153 AKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNLRSTTGNASQ 198 (208)
Q Consensus 153 a~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (208)
|++|.|++++|+.+.+.+.....+.++.++...-.+.-..++++..
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~~~~~~~p~~ 409 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGELVAATPPPVR 409 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999998888888887777666665555555433
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2.3e-23 Score=152.11 Aligned_cols=146 Identities=17% Similarity=0.244 Sum_probs=100.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc--CcCCCCC------------CCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhch
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY--DKFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 75 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 75 (208)
.+|+++|.+++|||||+++|+. +.+.... ..+.+.+.......+..+.+.+.+|||||+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 4443322 1223333333333344445789999999999999999
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHH-------hcCCe
Q 028507 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-VSIEEGEAKSR-------ELNVM 147 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 147 (208)
..+++++|++++|+|+++. .......++..+.. .++|+++++||+|+.+.+. ....+...+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 9999999999999999863 22223333333322 3589999999999864322 11233333332 23678
Q ss_pred EEEeecCCCCCh
Q 028507 148 FIETSAKAGFNI 159 (208)
Q Consensus 148 ~~~~sa~~~~~i 159 (208)
++++||++|.|+
T Consensus 159 iv~~Sa~~g~~~ 170 (194)
T cd01891 159 VLYASAKNGWAS 170 (194)
T ss_pred EEEeehhccccc
Confidence 999999999765
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=2.7e-23 Score=149.23 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=109.1
Q ss_pred EEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh----hhc---hhhhccCCcEEE
Q 028507 14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSL---IPSYIRDSSVAV 86 (208)
Q Consensus 14 vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~---~~~~~~~~d~~i 86 (208)
++|++|||||||+++|.+........+.++.+.....+.+.+ ...+.+||+||.... ..+ ....+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998875222223333333334444441 256899999996431 112 223467899999
Q ss_pred EEEeCCCh------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeec
Q 028507 87 VVYDVASR------QSFLNTSKWIDEVRTERG-------SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA 153 (208)
Q Consensus 87 ~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 153 (208)
+|+|++++ .++..+..|...+..... .+.|+++|+||+|+..................+..++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 477777777777765432 36999999999999765543333223344445678999999
Q ss_pred CCCCChHHHHHHHHHH
Q 028507 154 KAGFNIKPLFRKIAAA 169 (208)
Q Consensus 154 ~~~~~i~~~~~~l~~~ 169 (208)
+++.|++++++++...
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999998765
No 150
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=1.4e-22 Score=155.04 Aligned_cols=160 Identities=18% Similarity=0.107 Sum_probs=109.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCC-CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh--------hchhhhccC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSYIRD 81 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~ 81 (208)
+|+++|.+|+|||||+|+|++.++.. +..+.++...........+ ..+.+|||||..... ......+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987632 2333333333222222233 469999999965321 112345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCChH
Q 028507 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK 160 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 160 (208)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.+.... ......+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999765553 333443433 35899999999998643222 2333344444444 89999999999999
Q ss_pred HHHHHHHHHcCCCccccc
Q 028507 161 PLFRKIAAALPGMETLSS 178 (208)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~ 178 (208)
+++++|.+.+++.+...+
T Consensus 154 ~L~~~l~~~l~~~~~~~~ 171 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRYP 171 (270)
T ss_pred HHHHHHHHhCCCCCCCCC
Confidence 999999999876654443
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.90 E-value=1.7e-22 Score=142.21 Aligned_cols=146 Identities=21% Similarity=0.222 Sum_probs=108.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc--------hhhhcc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIR 80 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~~ 80 (208)
++|+++|++|+|||||++++.+.... ....+.++.+.....+...+ ..+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 68999999999999999999987642 23334444444445555554 57899999997654321 224567
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
.+|++++|+|++++.+......+.. ....|+++|+||+|+.+.... .....+.+++++|++++.|+.
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998776666544332 345999999999998765443 234446789999999999999
Q ss_pred HHHHHHHHHc
Q 028507 161 PLFRKIAAAL 170 (208)
Q Consensus 161 ~~~~~l~~~~ 170 (208)
+++++|...+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 152
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=3e-22 Score=157.25 Aligned_cols=163 Identities=21% Similarity=0.289 Sum_probs=112.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCC-CCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-hhhch-------hh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLI-------PS 77 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~-------~~ 77 (208)
.+.++|+++|.+|+|||||+|+|++.++.. ...+.++.+.....+..++ ..+.||||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 355799999999999999999999887642 2223333344444455555 4689999999743 22111 12
Q ss_pred hccCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC--CeEEEeecC
Q 028507 78 YIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAK 154 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~ 154 (208)
.+..+|++++|+|..+ ++.... .++..+... +.|+++|+||+|+.+. ...+...++...+ ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 3679999999999874 444443 344444332 3677889999998643 2345555555444 589999999
Q ss_pred CCCChHHHHHHHHHHcCCCcccccc
Q 028507 155 AGFNIKPLFRKIAAALPGMETLSST 179 (208)
Q Consensus 155 ~~~~i~~~~~~l~~~~~~~~~~~~~ 179 (208)
+|.|++++|++|...+++-+-..+.
T Consensus 200 tg~gv~eL~~~L~~~l~~~~~~~~~ 224 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKISPWLYAE 224 (339)
T ss_pred CccCHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999876554443
No 153
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=8.6e-23 Score=137.57 Aligned_cols=114 Identities=32% Similarity=0.561 Sum_probs=88.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCC--CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
||+|+|++|+|||||+++|.+..+. ....+..+.+..............+.+||++|.+.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988876 23334444455555666677766799999999998888877789999999999
Q ss_pred EeCCChhhHHHHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 028507 89 YDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~---~~~i~~~~~~~~piivv~nK~D 125 (208)
||++++++++.+..+ +..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999997555 4444443 35599999999998
No 154
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=4e-22 Score=159.34 Aligned_cols=160 Identities=19% Similarity=0.146 Sum_probs=118.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-------hhhchhhhccCCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d 83 (208)
.|+|+|.||||||||+++|++.+......+.++.......+.+.. ...+.+||+||... +...+...+..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 799999999999999999998775444445555555444444441 25699999999642 1122233466799
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 84 VAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 84 ~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
++|+|+|+++. ++++....|..++..+.. .++|++||+||+|+.+. .+..+.+...++.+++++||+++.|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999864 677777888888876543 46899999999998321 2344555666668899999999999
Q ss_pred hHHHHHHHHHHcCCCcc
Q 028507 159 IKPLFRKIAAALPGMET 175 (208)
Q Consensus 159 i~~~~~~l~~~~~~~~~ 175 (208)
+++++++|.+.+.+.+.
T Consensus 315 I~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 315 LDELLYAVAELLEETPE 331 (424)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999998865543
No 155
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=3e-22 Score=161.99 Aligned_cols=164 Identities=18% Similarity=0.093 Sum_probs=117.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-------hhhchhhhccCC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDS 82 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 82 (208)
..|+|||.||+|||||+++|++.+......+.++.......+.+.+ ..+.+||+||... .......++..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 4799999999999999999998766544455565665555566655 5799999999532 111223356889
Q ss_pred cEEEEEEeCCCh----hhHHHHHHHHHHHHHhc-----------CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCe
Q 028507 83 SVAVVVYDVASR----QSFLNTSKWIDEVRTER-----------GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (208)
Q Consensus 83 d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (208)
|++|+|+|+++. +.+..+..+..++..+. ....|++||+||+|+.+.... .+.........+++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence 999999999852 35555555555554432 135899999999998654432 22223333455789
Q ss_pred EEEeecCCCCChHHHHHHHHHHcCCCccc
Q 028507 148 FIETSAKAGFNIKPLFRKIAAALPGMETL 176 (208)
Q Consensus 148 ~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 176 (208)
++++||+++.|+++++.+|.+.+......
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~~ 345 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEARAA 345 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999998766543
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.89 E-value=2.4e-22 Score=163.12 Aligned_cols=149 Identities=24% Similarity=0.262 Sum_probs=113.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc--------hhhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 78 (208)
..++|+++|.+|+|||||+|+|++... .....+.++.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 358999999999999999999998764 234455666666666777766 56899999998654332 2235
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
+..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+..... ...+.+++++|+++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999998877665443332 3458999999999996543321 33456899999999999
Q ss_pred hHHHHHHHHHHcCC
Q 028507 159 IKPLFRKIAAALPG 172 (208)
Q Consensus 159 i~~~~~~l~~~~~~ 172 (208)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998754
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=5.7e-22 Score=160.11 Aligned_cols=152 Identities=21% Similarity=0.227 Sum_probs=114.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc--------hhhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 78 (208)
..++|+++|++|+|||||+|+|++... .....++++.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 458999999999999999999998753 234456666777777777776 56899999998654332 2346
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
++.+|++++|||++++.+++.. |+..+.. .++|+++|+||+|+.+. +...++..++.+++++|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999988776654 5554432 45899999999998543 12334556677899999998 59
Q ss_pred hHHHHHHHHHHcCCC
Q 028507 159 IKPLFRKIAAALPGM 173 (208)
Q Consensus 159 i~~~~~~l~~~~~~~ 173 (208)
++++|+.|.+.+.+.
T Consensus 348 I~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 348 IKALVDLLTQKINAF 362 (442)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888877543
No 158
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.7e-22 Score=146.21 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=102.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC----cCCC---CCCCccceeeEEEEEEEC------------CEEEEEEEEEcCCchh
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD----KFDN---TYQATIGIDFLSKTMYLE------------DRTVRLQLWDTAGQER 70 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~----~~~~---~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~~ 70 (208)
++|+++|++|+|||||+++|+.. .+.. +..+..+.+.....+.+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 1211 112233333333223332 2357899999999877
Q ss_pred hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHH------
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR------ 142 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~------ 142 (208)
+..........+|++++|+|+++.........+. +.... ++|+++++||+|+...... ..++......
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 6544444567889999999998643222222221 22222 4799999999998643221 1222222111
Q ss_pred -hcCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 143 -ELNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 143 -~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
..+++++++||+++.|+++++++|...+.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13568999999999999999999998875
No 159
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.89 E-value=1.5e-22 Score=134.92 Aligned_cols=157 Identities=23% Similarity=0.328 Sum_probs=125.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
.++.+.++|..++|||||+|....+.+.....|+.+... .+++.+.+.+.+||.||++.|..+|+.|.++++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 368899999999999999999999999888888887543 3455566889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-----VMFIETSAKAGFNIKP 161 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 161 (208)
|+|+++++.+......+..+... .-.++|+++++||.|+..+ +............. +-.|.+|+++..+++.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 99999998877766655555332 2367999999999998553 22333322222222 2468899999999999
Q ss_pred HHHHHHHHc
Q 028507 162 LFRKIAAAL 170 (208)
Q Consensus 162 ~~~~l~~~~ 170 (208)
+.+||+++.
T Consensus 173 ~~~Wli~hs 181 (186)
T KOG0075|consen 173 TLDWLIEHS 181 (186)
T ss_pred HHHHHHHHh
Confidence 999999875
No 160
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.89 E-value=4.7e-22 Score=140.35 Aligned_cols=144 Identities=17% Similarity=0.208 Sum_probs=101.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch----hhhhchhhhccCCcEEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----~~~~~~~~~~~~~d~~i 86 (208)
+|+++|.+|+|||||+++|.+.... . ..+. .+.+... .+||+||.. ++.......+.++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~-~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-A-RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-C-ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998764321 1 1111 1122221 269999962 22222223478999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC--eEEEeecCCCCChHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--MFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~sa~~~~~i~~~~~ 164 (208)
+|+|+++.+++.. .|+..+ ..+.|+++++||+|+.+ ...+....++.+.++ +++++|++++.|++++|+
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 9999998765532 333332 23578999999999854 235566677777775 899999999999999999
Q ss_pred HHHHHcCCCccc
Q 028507 165 KIAAALPGMETL 176 (208)
Q Consensus 165 ~l~~~~~~~~~~ 176 (208)
++.+.+.+...+
T Consensus 141 ~l~~~~~~~~~~ 152 (158)
T PRK15467 141 YLASLTKQEEAG 152 (158)
T ss_pred HHHHhchhhhcc
Confidence 999988655443
No 161
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=1e-21 Score=142.52 Aligned_cols=155 Identities=24% Similarity=0.260 Sum_probs=110.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCC----------------CccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQ----------------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 74 (208)
+|+|+|.+|+|||||+++|.+........ ...+........... ...+.+||+||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 58999999999999999999776644321 112223323333333 367999999999988888
Q ss_pred hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC--HHHHHHHHHh---------
Q 028507 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE--------- 143 (208)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~~~--------- 143 (208)
+..++..+|++++|+|++++..... ..++..+.. .+.|+++++||+|+..+.... ..+.......
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8888999999999999987544332 233333332 469999999999987532211 2223333322
Q ss_pred -----cCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 144 -----LNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 144 -----~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
...+++++|++++.|+++++.+|...++
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3468999999999999999999998874
No 162
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=3e-22 Score=162.84 Aligned_cols=169 Identities=20% Similarity=0.186 Sum_probs=116.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc-----------h
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------I 75 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 75 (208)
..++|+++|.+|+|||||+++|++... .....+.++.+.....+..++ ..+.+|||||+.++... .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence 458999999999999999999997653 234445555555555555555 36899999997543322 1
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-h----cCCeEEE
Q 028507 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-E----LNVMFIE 150 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 150 (208)
..+++.+|++|+|+|++++.+..... ++..+. ..++|+++|+||+|+.+.. ....+...... . .++++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~---~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLIL---EAGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH---HcCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEE
Confidence 23578999999999999776555432 222222 2358999999999997211 11122222211 1 2468999
Q ss_pred eecCCCCChHHHHHHHHHHcCCCcccccccccc
Q 028507 151 TSAKAGFNIKPLFRKIAAALPGMETLSSTKQEE 183 (208)
Q Consensus 151 ~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~ 183 (208)
+||++|.|+.++|+++...+.....+.++.+..
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln 356 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYENANRRISTSKLN 356 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHH
Confidence 999999999999999999887766666555443
No 163
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=2.3e-22 Score=135.20 Aligned_cols=170 Identities=24% Similarity=0.516 Sum_probs=147.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
++.-.+||.++|++..|||||+-.+.++.+++++..+.++....+.+.+.+-.+.+.|||.+|++++..+.+-....+-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 34568999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc-----CCCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR-----QVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 159 (208)
++|+||.+.+.++..+.+||...+......+| ++|++|.|..-.- ..-..+++.+++..++.++.+|+....|+
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv 174 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINV 174 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccH
Confidence 99999999999999999999999887776677 5678999963211 11123456677778899999999999999
Q ss_pred HHHHHHHHHHcCCCcc
Q 028507 160 KPLFRKIAAALPGMET 175 (208)
Q Consensus 160 ~~~~~~l~~~~~~~~~ 175 (208)
.++|..+...+.+.+-
T Consensus 175 ~KIFK~vlAklFnL~~ 190 (205)
T KOG1673|consen 175 QKIFKIVLAKLFNLPW 190 (205)
T ss_pred HHHHHHHHHHHhCCce
Confidence 9999998888765543
No 164
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=6.3e-22 Score=139.37 Aligned_cols=147 Identities=22% Similarity=0.194 Sum_probs=101.9
Q ss_pred EEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh--------chhhhccCCc
Q 028507 13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRDSS 83 (208)
Q Consensus 13 ~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~d 83 (208)
+++|.+|+|||||+++|.+.... ....+.++.+........++ ..+.+|||||+..+.. .....+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999976521 22233333444444555555 5799999999877433 3345678899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCChHHH
Q 028507 84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKPL 162 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~ 162 (208)
++++|+|..++.+.... .....+.. .+.|+++|+||+|+.+.... .......+. .++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999865433322 12222222 24999999999998654322 222334565 7899999999999999
Q ss_pred HHHHHHHc
Q 028507 163 FRKIAAAL 170 (208)
Q Consensus 163 ~~~l~~~~ 170 (208)
|+++.+.+
T Consensus 150 ~~~l~~~~ 157 (157)
T cd01894 150 LDAILELL 157 (157)
T ss_pred HHHHHhhC
Confidence 99998753
No 165
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.5e-21 Score=155.30 Aligned_cols=163 Identities=18% Similarity=0.143 Sum_probs=119.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-------hhhchhhhccCCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d 83 (208)
.|+|||.||||||||+|+|++.+......+.++.....-.+...+ ...+.|+|+||... .......++..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 699999999999999999998776555556666555555555543 23599999999643 1122234578999
Q ss_pred EEEEEEeCC---ChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC--CeEEEeecCCC
Q 028507 84 VAVVVYDVA---SRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAG 156 (208)
Q Consensus 84 ~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~ 156 (208)
++++|+|++ +.+.++....|+..+..+.. ...|+++|+||+|+.....+ ......+....+ .+++.+||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 45567777777777766532 35899999999998654332 233344444444 37899999999
Q ss_pred CChHHHHHHHHHHcCCCcc
Q 028507 157 FNIKPLFRKIAAALPGMET 175 (208)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~~ 175 (208)
.++++++++|.+.+++.+.
T Consensus 319 ~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 319 LGVKELCWDLMTFIEENPR 337 (390)
T ss_pred cCHHHHHHHHHHHhhhCcc
Confidence 9999999999998876543
No 166
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.8e-21 Score=159.47 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=109.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh--------hhhchhhhcc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR 80 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 80 (208)
.+|+|+|.+|||||||+|+|++.... ....++.+.+.......+.+ ..+.+|||||.+. +......++.
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999987642 34455555565555666666 4589999999752 3334556788
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCCh
Q 028507 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNI 159 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i 159 (208)
.+|++|+|+|+++..++.. ..+...+.. .++|+++|+||+|+.... .+..+.+ ..++ ..+++||++|.|+
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~gi 187 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRGV 187 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCCc
Confidence 9999999999997655432 233333332 359999999999985422 1122222 2343 4579999999999
Q ss_pred HHHHHHHHHHcCC
Q 028507 160 KPLFRKIAAALPG 172 (208)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (208)
+++|++|...+.+
T Consensus 188 ~eL~~~i~~~l~~ 200 (472)
T PRK03003 188 GDLLDAVLAALPE 200 (472)
T ss_pred HHHHHHHHhhccc
Confidence 9999999998865
No 167
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=1.3e-21 Score=163.12 Aligned_cols=158 Identities=19% Similarity=0.226 Sum_probs=114.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc-------CCCCCC------CccceeeEE--EEEEE---CCEEEEEEEEEcCCchhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQ------ATIGIDFLS--KTMYL---EDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~-------~~~~~~------~~~~~~~~~--~~~~~---~~~~~~~~i~D~~G~~~~ 71 (208)
-+|+++|+.++|||||+++|+... +...+. ...+++... ..+.+ ++..+.++||||||+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 589999999999999999998542 111111 112333332 33333 455689999999999999
Q ss_pred hhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC---eE
Q 028507 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---MF 148 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~ 148 (208)
...+..++..+|++|+|+|+++..+......|+..+. .++|+++|+||+|+.+.. .......+...+++ .+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~v 157 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEA 157 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceE
Confidence 9999999999999999999998655666555554432 358999999999985432 12222344444555 48
Q ss_pred EEeecCCCCChHHHHHHHHHHcCCC
Q 028507 149 IETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 149 ~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
+++||++|.|+.++|++|.+.++.-
T Consensus 158 i~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 158 ILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred EEeeccCCCCHHHHHHHHHHhCCCC
Confidence 9999999999999999999988643
No 168
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=9.2e-22 Score=158.11 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=112.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh--hhch------hhhccC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI------PSYIRD 81 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--~~~~------~~~~~~ 81 (208)
.+|+|+|.+|+|||||+|+|++..+.....++++.+.....+.+.+. ..+.+|||+|..+. ...+ ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987765444555566666555655542 26889999997331 1111 223688
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCe-EEEeecCCCCChH
Q 028507 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIK 160 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~ 160 (208)
+|++|+|+|++++.+++.+..|...+......++|+++|+||+|+.+... .... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999988777776555555444445699999999999864321 1111 1123444 5889999999999
Q ss_pred HHHHHHHHHcC
Q 028507 161 PLFRKIAAALP 171 (208)
Q Consensus 161 ~~~~~l~~~~~ 171 (208)
+++++|.+.+.
T Consensus 352 eL~e~I~~~l~ 362 (426)
T PRK11058 352 LLFQALTERLS 362 (426)
T ss_pred HHHHHHHHHhh
Confidence 99999999874
No 169
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=1.1e-21 Score=144.00 Aligned_cols=161 Identities=19% Similarity=0.196 Sum_probs=103.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcC---CCCCCCccceeeEEEEEEEC---------------------------C----
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYLE---------------------------D---- 55 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 55 (208)
++|+++|+.|+|||||+..+.+... ........++........+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975421 11111111111111111110 1
Q ss_pred EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC--C
Q 028507 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S 133 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~--~ 133 (208)
....+.||||||++.+...+...+..+|++++|+|++++.........+..+.. .+ ..|+++++||+|+.+.... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~-~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MG-LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cC-CCcEEEEEEchhccCHHHHHHH
Confidence 125799999999999888777778899999999999864211111222222222 21 2478999999998653221 1
Q ss_pred HHHHHHHHHhc---CCeEEEeecCCCCChHHHHHHHHHHcCC
Q 028507 134 IEEGEAKSREL---NVMFIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 134 ~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
.++.+.++... +++++++||++|.|++++|++|.+.+++
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 12333333332 5689999999999999999999988765
No 170
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.3e-21 Score=128.25 Aligned_cols=158 Identities=23% Similarity=0.362 Sum_probs=124.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.++++|+.+|..++||||++..|..+... ...||++. ....+.+.+ +++++||.+|++..+.+|+.++.+..++|
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGF--nvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGF--NVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-ccccccce--eEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 47899999999999999999999877643 33455554 344444444 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-----cCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----LNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~ 160 (208)
||+|..+.+.+++....+..+..+.. ...|++|.+||.|+..+.. ..++..+... ..+-+.++++.+|+++.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999988777777666665544433 5688999999999977654 4555544432 23578999999999999
Q ss_pred HHHHHHHHHcC
Q 028507 161 PLFRKIAAALP 171 (208)
Q Consensus 161 ~~~~~l~~~~~ 171 (208)
+-|.||.+.+.
T Consensus 168 eglswlsnn~~ 178 (180)
T KOG0071|consen 168 EGLSWLSNNLK 178 (180)
T ss_pred HHHHHHHhhcc
Confidence 99999987654
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2.6e-21 Score=160.77 Aligned_cols=154 Identities=20% Similarity=0.214 Sum_probs=112.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+..+|+++|++++|||||+++|.+..+.....++.+.+.....+.+++. ..+.|||||||+.|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 35689999999999999999999988876655555555554455555443 26999999999999999988899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC---------CeEEEeecCCCC
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGF 157 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~~~ 157 (208)
+|+|+++......... +......++|+++++||+|+.+. ..++....+...+ .+++++||++|.
T Consensus 164 LVVda~dgv~~qT~e~----i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQTIEA----ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhHHHH----HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 9999986321111111 22222245999999999998542 2333333333322 479999999999
Q ss_pred ChHHHHHHHHH
Q 028507 158 NIKPLFRKIAA 168 (208)
Q Consensus 158 ~i~~~~~~l~~ 168 (208)
|+.++|++|..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999875
No 172
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=2.4e-21 Score=141.54 Aligned_cols=160 Identities=23% Similarity=0.230 Sum_probs=105.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCc----------hhhhhch
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI 75 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 75 (208)
....++|+++|.+|+|||||+++|++..+.....++.+.+........ ...+.||||||. +.+..+.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 345689999999999999999999987654443444433333222222 257999999994 2333344
Q ss_pred hhhcc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC--HHHHHHHHHhcCCeEEE
Q 028507 76 PSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRELNVMFIE 150 (208)
Q Consensus 76 ~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~ 150 (208)
..++. ..+++++|+|.+++.+.... .+...+. . .++|+++++||+|+.+..+.. ..++.........++++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-E--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL 173 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-H--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 44444 34688889998865333221 1112222 2 358899999999986543221 22233444444678999
Q ss_pred eecCCCCChHHHHHHHHHHcCC
Q 028507 151 TSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 151 ~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
+|++++.|++++++.|...+.+
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999887754
No 173
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=7.3e-21 Score=135.98 Aligned_cols=155 Identities=23% Similarity=0.251 Sum_probs=104.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh-----------chh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP 76 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~~~ 76 (208)
.++|+++|.+|+|||||+++|++.... ....+.++..........++ ..+.+||+||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999987642 22333333334334444554 4588999999643211 112
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH-Hhc----CCeEEEe
Q 028507 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-REL----NVMFIET 151 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~~~ 151 (208)
..+..+|++++|+|++++.+..... ++..+. ..+.|+++++||+|+.+.......+..... ..+ ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL---EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3467899999999999876654432 222222 235899999999998765422222222222 222 3589999
Q ss_pred ecCCCCChHHHHHHHHHH
Q 028507 152 SAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 152 sa~~~~~i~~~~~~l~~~ 169 (208)
|++++.|+.++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 174
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.88 E-value=4.1e-21 Score=160.08 Aligned_cols=157 Identities=20% Similarity=0.196 Sum_probs=118.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC---cCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+.|+++|++++|||||+++|++. .++.+..++.+++.....+..++ ..+.|||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999963 34445556666676666666666 68999999999999888888889999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCcccCC--CHHHHHHHHHhc----CCeEEEeecCCC
Q 028507 87 VVYDVAS---RQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV--SIEEGEAKSREL----NVMFIETSAKAG 156 (208)
Q Consensus 87 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~sa~~~ 156 (208)
+|+|+++ +++.+.+ ..+ .. .++| +++++||+|+.+...+ ...++..++... +++++++|+++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il-~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVL-DL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHH-HH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999997 4444333 222 22 2477 9999999999764422 123444444443 468999999999
Q ss_pred CChHHHHHHHHHHcCCCcc
Q 028507 157 FNIKPLFRKIAAALPGMET 175 (208)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~~ 175 (208)
.|+++++++|...+.....
T Consensus 152 ~GI~eL~~~L~~l~~~~~~ 170 (581)
T TIGR00475 152 QGIGELKKELKNLLESLDI 170 (581)
T ss_pred CCchhHHHHHHHHHHhCCC
Confidence 9999999999887765543
No 175
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=9.5e-21 Score=134.38 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=103.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCC-CCccceeeEEEEEEECCEEEEEEEEEcCCchhhh--------hchhhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~ 78 (208)
...+|+++|++|+|||||++++.+....... .+.......... .......+.+|||||..... ......
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 4589999999999999999999987653221 111111111112 22223679999999965322 223445
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC-CeEEEeecCCCC
Q 028507 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGF 157 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~ 157 (208)
+..+|++++|+|++++.. .....+...+... +.|+++|+||+|+..................+ .+++++|++++.
T Consensus 80 ~~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 80 LKDVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGE 155 (168)
T ss_pred HHhCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCC
Confidence 789999999999997621 1122223333322 48999999999987433322333344444443 589999999999
Q ss_pred ChHHHHHHHHHHc
Q 028507 158 NIKPLFRKIAAAL 170 (208)
Q Consensus 158 ~i~~~~~~l~~~~ 170 (208)
++++++++|.+.+
T Consensus 156 ~~~~l~~~l~~~~ 168 (168)
T cd04163 156 NVDELLEEIVKYL 168 (168)
T ss_pred ChHHHHHHHHhhC
Confidence 9999999997753
No 176
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.4e-21 Score=135.74 Aligned_cols=169 Identities=31% Similarity=0.545 Sum_probs=146.6
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCC
Q 028507 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (208)
|......++++++|..|.||||++.+.+.+.|...+.++.+.......+..+.+.+++..|||.|++.+......++-+.
T Consensus 4 p~~~~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~ 83 (216)
T KOG0096|consen 4 PPQQGLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQG 83 (216)
T ss_pred CccccceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEec
Confidence 34445689999999999999999999999999999999999998888877777789999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 028507 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPL 162 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 162 (208)
...|++||++..-++.++.+|...+.+.++ ++||++++||.|..... ...+...+-...++.+++.|++++-|.+.-
T Consensus 84 qcAiimFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 84 QCAIIMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred ceeEEEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccc
Confidence 999999999999999999999999988775 49999999999975433 223334445556789999999999999999
Q ss_pred HHHHHHHcCCCc
Q 028507 163 FRKIAAALPGME 174 (208)
Q Consensus 163 ~~~l~~~~~~~~ 174 (208)
|-|++..+...+
T Consensus 161 Fl~LarKl~G~p 172 (216)
T KOG0096|consen 161 FLWLARKLTGDP 172 (216)
T ss_pred hHHHhhhhcCCC
Confidence 999999886543
No 177
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=1.3e-20 Score=145.89 Aligned_cols=164 Identities=18% Similarity=0.229 Sum_probs=108.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCC-CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh--------hchhh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPS 77 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~ 77 (208)
++--.|+|+|.+|+|||||+|+|++.++.. ...+.++........... ...+.+|||||..... .....
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~ 80 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWS 80 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHH
Confidence 355679999999999999999999887632 222322222222222222 2679999999964322 22334
Q ss_pred hccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC-CeEEEeecCCC
Q 028507 78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAG 156 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~ 156 (208)
.+..+|++++|+|++++.+. .....+..+. ..+.|+++|+||+|+.............+....+ ..++++||+++
T Consensus 81 ~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~ 156 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKG 156 (292)
T ss_pred HHhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence 57899999999999873221 1222223332 2358999999999997432222334444444444 58999999999
Q ss_pred CChHHHHHHHHHHcCCCccc
Q 028507 157 FNIKPLFRKIAAALPGMETL 176 (208)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~~~ 176 (208)
.|+++++++|.+.+++.+..
T Consensus 157 ~gv~~L~~~L~~~l~~~~~~ 176 (292)
T PRK00089 157 DNVDELLDVIAKYLPEGPPY 176 (292)
T ss_pred CCHHHHHHHHHHhCCCCCCC
Confidence 99999999999998765433
No 178
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=2.7e-21 Score=140.43 Aligned_cols=160 Identities=25% Similarity=0.306 Sum_probs=107.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCC------------------CCCCccceeeEEEEEEECCEEEEEEEEEcCCch
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
+.++|+++|+.++|||||+++|+...... +.....+.......+........++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 35799999999999999999998543211 111223333344444411333679999999999
Q ss_pred hhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC-CCHHHHH-HHHHhc---
Q 028507 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-VSIEEGE-AKSREL--- 144 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~-~~~~~~--- 144 (208)
+|.......+..+|++|+|+|+.+.-.. ...+.+..+.. .++|+++++||+|+...+- ....+.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 9988888889999999999999854221 12222333322 3488999999999973221 0111222 222222
Q ss_pred ---CCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 145 ---NVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 145 ---~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
.++++++||++|.|+.++++.|.+.++
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 247999999999999999999999875
No 179
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=1.5e-20 Score=137.87 Aligned_cols=118 Identities=19% Similarity=0.363 Sum_probs=88.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCC-cEEEEEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS-SVAVVVY 89 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 89 (208)
+|+++|++|+|||+|+++|..+.+.....++ ............+....+.+||+||+.++...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998776554433 2222222222113346799999999999988888888998 9999999
Q ss_pred eCCCh-hhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCcc
Q 028507 90 DVASR-QSFLNTSKWIDEVRTE---RGSDVIIVLVGNKTDLVEK 129 (208)
Q Consensus 90 d~~~~-~s~~~~~~~~~~i~~~---~~~~~piivv~nK~D~~~~ 129 (208)
|+++. .++..+..++..+... ....+|+++++||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99987 6677766666554332 2257999999999998653
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=1.5e-20 Score=159.80 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=111.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+...|+|+|+.++|||||+++|....+.....++.+.+.....+.+++ ..++||||||+..|..++...+..+|++|
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 4678999999999999999999998777555444444444444555555 57999999999999999998899999999
Q ss_pred EEEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHH-------HHHhcC--CeEEEeecC
Q 028507 87 VVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-------KSRELN--VMFIETSAK 154 (208)
Q Consensus 87 ~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~sa~ 154 (208)
+|||+++. ++.+. +......++|++|++||+|+.... ..+... ++..++ ++++++||+
T Consensus 366 LVVdAddGv~~qT~e~-------i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 366 LVVAADDGVMPQTIEA-------INHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEEECCCCCCHhHHHH-------HHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence 99999863 33322 222222459999999999985432 222211 122233 689999999
Q ss_pred CCCChHHHHHHHHHH
Q 028507 155 AGFNIKPLFRKIAAA 169 (208)
Q Consensus 155 ~~~~i~~~~~~l~~~ 169 (208)
+|.|+.++|++|...
T Consensus 436 tG~GI~eLle~I~~~ 450 (787)
T PRK05306 436 TGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCchHHHHhhhhh
Confidence 999999999998764
No 181
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=139.82 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=116.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh--------hhchh
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--------RSLIP 76 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~ 76 (208)
.++--.|+++|.||+|||||+|++.+.+.. .+.-+.++.......+..+ ...+.|+||||...- .....
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~ 80 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAAR 80 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence 356678999999999999999999999874 3334444444444444444 367999999995432 22233
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCC
Q 028507 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKA 155 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 155 (208)
..+..+|+++||+|+++...- .-...++.+.. .+.|+++++||+|....................+ .++++||+.
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~ 156 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK 156 (298)
T ss_pred HHhccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence 447899999999999964332 12233344443 3489999999999877655322333333333333 899999999
Q ss_pred CCChHHHHHHHHHHcCCCcccccc
Q 028507 156 GFNIKPLFRKIAAALPGMETLSST 179 (208)
Q Consensus 156 ~~~i~~~~~~l~~~~~~~~~~~~~ 179 (208)
|.+++.+.+.+...+++-+--.+.
T Consensus 157 g~n~~~L~~~i~~~Lpeg~~~yp~ 180 (298)
T COG1159 157 GDNVDTLLEIIKEYLPEGPWYYPE 180 (298)
T ss_pred cCCHHHHHHHHHHhCCCCCCcCCh
Confidence 999999999999999877665543
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.86 E-value=1.6e-20 Score=158.27 Aligned_cols=156 Identities=19% Similarity=0.236 Sum_probs=111.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCcccee--eEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID--FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
+..+|+|+|+.++|||||+++|....+.....++.+.+ .+...+..++....++||||||++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 56799999999999999999999877654433333322 2223333334457899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH-------HhcC--CeEEEeecCCC
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-------RELN--VMFIETSAKAG 156 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~sa~~~ 156 (208)
|+|+|+++......... +..+ ...++|+++++||+|+.... ..++.... ..++ ++++++||++|
T Consensus 323 ILVVDA~dGv~~QT~E~-I~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 323 ILIIAADDGVKPQTIEA-INYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEECcCCCChhhHHH-HHHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 99999986322221111 1112 22459999999999986532 22222222 2233 58999999999
Q ss_pred CChHHHHHHHHHHc
Q 028507 157 FNIKPLFRKIAAAL 170 (208)
Q Consensus 157 ~~i~~~~~~l~~~~ 170 (208)
.|+.+++++|....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999998764
No 183
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=7.1e-21 Score=162.61 Aligned_cols=180 Identities=20% Similarity=0.223 Sum_probs=122.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh----------hhhc-h
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSL-I 75 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~-~ 75 (208)
..++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++. .+.+|||||..+ +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999988742 334455556666666666664 477999999532 2211 1
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-h----cCCeEEE
Q 028507 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-E----LNVMFIE 150 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 150 (208)
...++.+|++++|+|+++..+...+. ++..+.. .++|+++|+||+|+.+... ......... . ...++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 23468999999999999876666543 2333322 3589999999999965322 111111111 1 1347899
Q ss_pred eecCCCCChHHHHHHHHHHcCCCccccccccccccccccccccCC
Q 028507 151 TSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNLRSTTGN 195 (208)
Q Consensus 151 ~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (208)
+||++|.|++++++.+.+.+.+...+.++.+.+......-..+++
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~~~~~ 645 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPH 645 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhhCCC
Confidence 999999999999999999998777766665554443333333343
No 184
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=1.3e-20 Score=157.23 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=111.4
Q ss_pred cCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc------hhhhc--cCCcEEEE
Q 028507 16 GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVAVV 87 (208)
Q Consensus 16 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i~ 87 (208)
|++|+|||||+|+|++..+.....++++.+.....+.+++ ..+++|||||+.++... .+.++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998877666667777776666666666 45899999998876543 23232 47899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
|+|+++.+.. .++...+. ..++|+++++||+|+.+.+... .+.+.+.+.++++++++||++|.|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999875322 22222232 2469999999999987665554 345777888899999999999999999999998
Q ss_pred HHc
Q 028507 168 AAL 170 (208)
Q Consensus 168 ~~~ 170 (208)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 764
No 185
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.7e-21 Score=132.45 Aligned_cols=161 Identities=22% Similarity=0.306 Sum_probs=123.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC-------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI 79 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 79 (208)
-..|.++|+|+.++|||||+.++..... +..-.++.+.......+. ...+.+||.+|++..+++|..++
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC----NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec----cceeEEEEcCChHHHHHHHHHHH
Confidence 3568999999999999999988764321 223344555444433333 35799999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH------hcCCeEEEee
Q 028507 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR------ELNVMFIETS 152 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s 152 (208)
..+|++|+++|+++++.++......+.+.. ..-.++|+++.+||.|+.+..+ .+++..... +...++.++|
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPVS 168 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccch
Confidence 999999999999999999987766666543 4447899999999999865433 233322222 2246899999
Q ss_pred cCCCCChHHHHHHHHHHcCCC
Q 028507 153 AKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 153 a~~~~~i~~~~~~l~~~~~~~ 173 (208)
|.+|+|+++-.+|+...+++.
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999998766
No 186
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=3.4e-20 Score=158.24 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=115.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc----------hh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IP 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~ 76 (208)
++.++|+++|++|+|||||+|+|++.+......+.++.+.....+.. ...++.+||+||..++... ..
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHH
Confidence 35689999999999999999999987664444555555544444444 3467999999998766432 11
Q ss_pred hh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecC
Q 028507 77 SY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154 (208)
Q Consensus 77 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 154 (208)
.+ ...+|++++|+|+++.+... ++...+.+ .++|+++++||+|+.+.+.. ....+.+.+.++++++++|++
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~ 151 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVST 151 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEee
Confidence 22 24799999999998754422 33334433 35999999999998765555 345677778899999999999
Q ss_pred CCCChHHHHHHHHHHc
Q 028507 155 AGFNIKPLFRKIAAAL 170 (208)
Q Consensus 155 ~~~~i~~~~~~l~~~~ 170 (208)
+++|++++++.+.+..
T Consensus 152 ~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 152 RGRGIEALKLAIDRHQ 167 (772)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999998765
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=2.9e-20 Score=151.46 Aligned_cols=148 Identities=21% Similarity=0.188 Sum_probs=106.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh--------hhhchhhhcc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR 80 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 80 (208)
++|+|+|.+|||||||+++|.+.... ....+..+.+.......+++ ..+.+|||||+.. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 23345555566666666666 6799999999876 2233445678
Q ss_pred CCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCC
Q 028507 81 DSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGF 157 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 157 (208)
.+|++|+|+|++++.+.. .+..|+. . .+.|+++|+||+|..+. ...... +..+++ .++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~-~~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYE-FYSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHH-HHhcCCCCCEEEEeeCCC
Confidence 999999999998643322 2233332 2 25899999999996431 122222 235566 48999999999
Q ss_pred ChHHHHHHHHHHc
Q 028507 158 NIKPLFRKIAAAL 170 (208)
Q Consensus 158 ~i~~~~~~l~~~~ 170 (208)
|+.++++.+....
T Consensus 149 gv~~l~~~I~~~~ 161 (435)
T PRK00093 149 GIGDLLDAILEEL 161 (435)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998844
No 188
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=2.2e-20 Score=134.66 Aligned_cols=147 Identities=19% Similarity=0.230 Sum_probs=95.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch----------hhhhchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLIP 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~ 76 (208)
.+.++|+|+|.+|+|||||+++|.+..+.....++.+.+........++ .+.+|||||.. .+..+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 4678999999999999999999998764333333333333333333332 58999999942 2333334
Q ss_pred hhcc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHhcC--CeEE
Q 028507 77 SYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELN--VMFI 149 (208)
Q Consensus 77 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~~~ 149 (208)
.+++ .++++++|+|++++-+.... .++..+.. .++|+++++||+|+.++.. ....+++..+...+ ..++
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~ 168 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQ 168 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceE
Confidence 4444 46899999999875443333 22233322 3589999999999865322 22344445555544 4899
Q ss_pred EeecCCCCChH
Q 028507 150 ETSAKAGFNIK 160 (208)
Q Consensus 150 ~~sa~~~~~i~ 160 (208)
++||++|+|++
T Consensus 169 ~~Sa~~g~gi~ 179 (179)
T TIGR03598 169 LFSSLKKTGID 179 (179)
T ss_pred EEECCCCCCCC
Confidence 99999999973
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=6.9e-21 Score=155.07 Aligned_cols=167 Identities=22% Similarity=0.219 Sum_probs=113.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc-CCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc-----------h
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------I 75 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----------~ 75 (208)
..++|+++|.+|+|||||+++|++.. ......++++.+.....+..++ ..+.+|||||..+.... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 46999999999999999999999765 3344455555555555555555 45889999996432111 1
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHH-HHHHh----cCCeEEE
Q 028507 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-AKSRE----LNVMFIE 150 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~-~~~~~----~~~~~~~ 150 (208)
..++..+|++|+|+|++++.+..... +...+.. .++|+++++||+|+.+... ..+.. ..... ..+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence 23578999999999999765544432 2222222 3589999999999874322 11111 11111 2469999
Q ss_pred eecCCCCChHHHHHHHHHHcCCCccccccccc
Q 028507 151 TSAKAGFNIKPLFRKIAAALPGMETLSSTKQE 182 (208)
Q Consensus 151 ~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 182 (208)
+||+++.|+.++++.+.+.+.+...+.++...
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~l 355 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYENANRRISTSVL 355 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHcCcCChHHH
Confidence 99999999999999998877665555544443
No 190
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=3.6e-20 Score=154.71 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=111.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC--cCCC-------------CCCCccceeeEEEEEEE---CCEEEEEEEEEcCCchhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD--KFDN-------------TYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~ 71 (208)
.+|+|+|+.++|||||+.+|+.. .+.. +.....++......+.+ ++..+.+++|||||+.+|
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 58999999999999999999853 1110 11112222222222322 455688999999999999
Q ss_pred hhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC---eE
Q 028507 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---MF 148 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~ 148 (208)
...+..++..+|++|+|+|+++.........|+... ..++|+++|+||+|+..... ......+...+++ .+
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~~v 161 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDASDA 161 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcceE
Confidence 998999999999999999999764444444444332 23589999999999854321 1222333344455 48
Q ss_pred EEeecCCCCChHHHHHHHHHHcCCC
Q 028507 149 IETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 149 ~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
+++||++|.|+.+++++|.+.++.-
T Consensus 162 i~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 162 VLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred EEEecCCCCCHHHHHHHHHHhCccc
Confidence 9999999999999999999988643
No 191
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=4.1e-20 Score=150.37 Aligned_cols=152 Identities=22% Similarity=0.212 Sum_probs=109.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCc--------hhhhhchhhhccC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLIPSYIRD 81 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~~ 81 (208)
+|+++|.+|||||||+|+|++.... ....+..+.+.......+.+ ..+.+|||||. ..+......++..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987642 23345555555566666666 46999999996 3344455667889
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCChH
Q 028507 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK 160 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 160 (208)
+|++++|+|+.+..+... ..+...++. .++|+++|+||+|+.+.... . ..+..+++ .++++||.+|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~-~~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----A-AEFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----H-HHHHhcCCCCeEEEeCCcCCChH
Confidence 999999999986433222 122222322 25899999999998654321 1 22345676 79999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028507 161 PLFRKIAAALPGM 173 (208)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (208)
++++++...+.+.
T Consensus 150 ~ll~~i~~~l~~~ 162 (429)
T TIGR03594 150 DLLDAILELLPEE 162 (429)
T ss_pred HHHHHHHHhcCcc
Confidence 9999999988653
No 192
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=4.1e-20 Score=145.28 Aligned_cols=151 Identities=21% Similarity=0.198 Sum_probs=113.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh---------hchhhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYI 79 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~~~ 79 (208)
..|+|||.||||||||+|+|++.+. ..+..|.++.+.......+.+. .|.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 6799999999999999999998876 3456778888888888888774 59999999976422 2334457
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCC
Q 028507 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN 158 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~ 158 (208)
..+|++|||+|.... .....+.+..+.. ..++|+++|+||+|-. ..+........+|+ ..+.+||..|.|
T Consensus 82 ~eADvilfvVD~~~G--it~~D~~ia~~Lr--~~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREG--ITPADEEIAKILR--RSKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCC--CCHHHHHHHHHHH--hcCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccC
Confidence 899999999999742 2222222222222 2359999999999964 12333333445676 899999999999
Q ss_pred hHHHHHHHHHHcC
Q 028507 159 IKPLFRKIAAALP 171 (208)
Q Consensus 159 i~~~~~~l~~~~~ 171 (208)
+.++++.+...++
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999985
No 193
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=4.4e-20 Score=129.81 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=103.8
Q ss_pred EEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh-------chhhhccCCcEE
Q 028507 14 FLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDSSVA 85 (208)
Q Consensus 14 vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d~~ 85 (208)
++|++|+|||||++++.+.... .......+............ ...+.+||+||...+.. ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999976554 23333333333333333321 35799999999766543 333467899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHH---HHHHHHHhcCCeEEEeecCCCCChHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELNVMFIETSAKAGFNIKPL 162 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~sa~~~~~i~~~ 162 (208)
++|+|++++....... +.... ...+.|+++|+||+|+......... .........+.+++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~---~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELL---RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHH---HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876655544 22222 2246999999999998765433222 112223334579999999999999999
Q ss_pred HHHHHHHc
Q 028507 163 FRKIAAAL 170 (208)
Q Consensus 163 ~~~l~~~~ 170 (208)
++++.+.+
T Consensus 156 ~~~l~~~~ 163 (163)
T cd00880 156 REALIEAL 163 (163)
T ss_pred HHHHHhhC
Confidence 99998753
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=8.1e-20 Score=143.64 Aligned_cols=183 Identities=25% Similarity=0.213 Sum_probs=134.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhch-----------
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI----------- 75 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 75 (208)
..+||+|+|.|++|||||+|+|++..- ..+..+.++.+.....+.+++. ++.++||+|..+-....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 459999999999999999999997653 5566778888888888888884 59999999965432222
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH----hc-CCeEEE
Q 028507 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR----EL-NVMFIE 150 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~----~~-~~~~~~ 150 (208)
...+..+|++++|+|++.+- ......+..+... .+.++++++||+|+.+......++.+.... .. .++++.
T Consensus 255 ~~aI~~a~vvllviDa~~~~--~~qD~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGI--SEQDLRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCc--hHHHHHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 23477899999999999653 3333333333323 348899999999998764444444433322 22 349999
Q ss_pred eecCCCCChHHHHHHHHHHcCCCccccccccccccccccccccCCC
Q 028507 151 TSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNLRSTTGNA 196 (208)
Q Consensus 151 ~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (208)
+||+++.++.++|+.+...+.....+-++......-......++++
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~pP~ 376 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKHPPP 376 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999988888887777766655555555433
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.83 E-value=7.7e-20 Score=148.27 Aligned_cols=155 Identities=18% Similarity=0.212 Sum_probs=103.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcC-------------------------------CCCCCCccceeeEEEEEEEC
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYLE 54 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (208)
..+.++|+++|++++|||||+++|++..- ..+..+.++++.....+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 35679999999999999999999983211 11123444455544444444
Q ss_pred CEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC---
Q 028507 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--- 131 (208)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~--- 131 (208)
.+.+.||||||+++|.......+..+|++++|+|++++.++.....+...+....+ ..|+++++||+|+.+...
T Consensus 83 --~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 83 --KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred --CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccccccHHHH
Confidence 47899999999998876655667899999999999863233222222222323332 246899999999865221
Q ss_pred -CCHHHHHHHHHhcC-----CeEEEeecCCCCChHHHH
Q 028507 132 -VSIEEGEAKSRELN-----VMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 132 -~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 163 (208)
....++..++...+ ++++++||++|.|+.+.+
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11234445554444 479999999999998743
No 196
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.83 E-value=7.7e-19 Score=131.34 Aligned_cols=152 Identities=20% Similarity=0.250 Sum_probs=104.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh-------hchhhhccCCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~d 83 (208)
+|+++|++|+|||||+++|++........+.++.+.....+.+++ ..+++||+||..+.. ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998764333334444455555555665 579999999975322 22345688999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHHH----------------------------------------HHh------------
Q 028507 84 VAVVVYDVASRQ-SFLNTSKWIDEV----------------------------------------RTE------------ 110 (208)
Q Consensus 84 ~~i~v~d~~~~~-s~~~~~~~~~~i----------------------------------------~~~------------ 110 (208)
++++|+|+++++ ....+...+... ...
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 232222222111 000
Q ss_pred -----------c--CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 111 -----------R--GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 111 -----------~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
. ...+|+++|+||+|+.. ..+...++.. ..++++||+++.|++++|+.|.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0 12368999999999853 3344444443 46899999999999999999988663
No 197
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=3.6e-19 Score=123.67 Aligned_cols=157 Identities=22% Similarity=0.301 Sum_probs=117.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCC--------C----CCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDN--------T----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~--------~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
..+...||+|.|+.++||||+++++....... + ...|...++...... + ...++++|||||++|.
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~--~-~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD--E-DTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc--C-cceEEEecCCCcHHHH
Confidence 34678999999999999999999998766411 1 112233333332222 2 2579999999999999
Q ss_pred hchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhc--CCeEEE
Q 028507 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFIE 150 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~ 150 (208)
-+|..+.+++.++|+++|.+.+..+ .....+..+.... .+|++|.+||.|+..... .++++...... ..++++
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~p--pe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDALP--PEKIREALKLELLSVPVIE 157 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCCC--HHHHHHHHHhccCCCceee
Confidence 9999999999999999999998887 4444444444332 299999999999976554 45555554433 789999
Q ss_pred eecCCCCChHHHHHHHHHH
Q 028507 151 TSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 151 ~sa~~~~~i~~~~~~l~~~ 169 (208)
.++.++++..+.++.+...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 9999999999998888776
No 198
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=1.7e-19 Score=146.31 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=104.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhc--CcCC-----------------------------CCCCCccceeeEEEEEEEC
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMY--DKFD-----------------------------NTYQATIGIDFLSKTMYLE 54 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (208)
..+.++|+++|+.++|||||+.+|+. +... .+...+.+++.....+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45679999999999999999999985 2211 1122344455554444444
Q ss_pred CEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCcccC--
Q 028507 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-- 131 (208)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~~~-- 131 (208)
.+.+.|||+||+++|.......+..+|++|+|+|+++.++.... ..+...+....+ ..++++++||+|+.+...
T Consensus 84 --~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 --KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred --CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHH
Confidence 47899999999999877666678899999999999976432111 111112222332 357899999999964221
Q ss_pred --CCHHHHHHHHHhcC-----CeEEEeecCCCCChHHH
Q 028507 132 --VSIEEGEAKSRELN-----VMFIETSAKAGFNIKPL 162 (208)
Q Consensus 132 --~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~ 162 (208)
....+...++...+ ++++++||++|.|+.+.
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 11344555666555 57999999999999863
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=5.8e-19 Score=150.96 Aligned_cols=153 Identities=20% Similarity=0.165 Sum_probs=106.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh--------hhhchhhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 78 (208)
...+|+|+|.+|||||||+|+|++... .....++.+.+.......+.+ ..+.+|||||... +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 347899999999999999999998764 223345555555554555555 4699999999653 23344556
Q ss_pred ccCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCC
Q 028507 79 IRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAG 156 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~ 156 (208)
+..+|++|+|+|+++. +.... .|...++. .++|+++|+||+|+.... .....+ ..++. ..+++||++|
T Consensus 352 ~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSA~~g 421 (712)
T PRK09518 352 VSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEPYPISAMHG 421 (712)
T ss_pred HHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHH-HHcCCCCeEEEECCCC
Confidence 7899999999999853 22222 33344432 469999999999985422 111222 12333 4678999999
Q ss_pred CChHHHHHHHHHHcCC
Q 028507 157 FNIKPLFRKIAAALPG 172 (208)
Q Consensus 157 ~~i~~~~~~l~~~~~~ 172 (208)
.|+.++|++|.+.+.+
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999998865
No 200
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=3.2e-19 Score=140.68 Aligned_cols=154 Identities=23% Similarity=0.260 Sum_probs=118.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchh--------hh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP--------SY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~ 78 (208)
..++++++|.||+|||||+|.|++... ..+..+.++.+.....+.++| +.+.++||+|..+.....+ ..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 358999999999999999999997654 456778889999999999998 7899999999776444333 24
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
+..+|.+++|+|.+.+.+-..... +. ....+.|+++|.||.|+......... ....+.+++.+|+++++|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccC
Confidence 789999999999997622222111 11 33456899999999999765542211 122345799999999999
Q ss_pred hHHHHHHHHHHcCCC
Q 028507 159 IKPLFRKIAAALPGM 173 (208)
Q Consensus 159 i~~~~~~l~~~~~~~ 173 (208)
++.+.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999888655
No 201
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=6.8e-19 Score=128.02 Aligned_cols=146 Identities=16% Similarity=0.111 Sum_probs=95.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC----------------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
++++|+++|+.++|||||+++|++... ..+..+..+++..... +......+.++||||+..|
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~--~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVE--YETANRHYAHVDCPGHADY 78 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeE--ecCCCeEEEEEECcCHHHH
Confidence 358999999999999999999985310 0111233333333333 3334467899999999988
Q ss_pred hhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCcccCC---CHHHHHHHHHhcC--
Q 028507 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN-- 145 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 145 (208)
.......+..+|++++|+|++..-. ......+..+.. .++| +++++||+|+....+. ...++.......+
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~ 154 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD 154 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 8877778899999999999985311 112222333322 2366 7788999998632221 1223444444443
Q ss_pred ---CeEEEeecCCCCCh
Q 028507 146 ---VMFIETSAKAGFNI 159 (208)
Q Consensus 146 ---~~~~~~sa~~~~~i 159 (208)
++++++||.+|.++
T Consensus 155 ~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 155 GDNTPIVRGSALKALEG 171 (195)
T ss_pred ccCCeEEEeeCccccCC
Confidence 58999999999985
No 202
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=3e-19 Score=143.74 Aligned_cols=163 Identities=22% Similarity=0.189 Sum_probs=106.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCC---CCCCCccceeeEEEEE--------------EE----CC------EEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTM--------------YL----ED------RTVR 59 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~--------------~~----~~------~~~~ 59 (208)
+++++|+++|++++|||||+++|.+.... .+.....++....... .. +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 46799999999999999999999754221 1111111111110000 00 11 1357
Q ss_pred EEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC--CHHHH
Q 028507 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEG 137 (208)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~--~~~~~ 137 (208)
+++||+||+++|...+......+|++++|+|+++........+.+..+ ...+ ..|+++++||+|+.+.... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 999999999999888888888999999999999642112222223323 2222 2468899999998753321 12333
Q ss_pred HHHHHhc---CCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 138 EAKSREL---NVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 138 ~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
..+.... +++++++||++|+|+++++++|...++
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 3333332 568999999999999999999998775
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=3.2e-19 Score=148.69 Aligned_cols=158 Identities=18% Similarity=0.265 Sum_probs=111.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc--CcCCCC--------------CCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY--DKFDNT--------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 73 (208)
-+|+|+|+.++|||||+++|+. +.+... .....++......+.+.+ ++++||||||+.+|..
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~ 79 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGG 79 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHH
Confidence 3799999999999999999985 333211 112233333334445544 7899999999999999
Q ss_pred chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC-CHHHHHHHHH-------hcC
Q 028507 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELN 145 (208)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~ 145 (208)
.+..++..+|++++|+|+++. .......++..+.. .++|+++++||+|+...+.. ...+...+.. ...
T Consensus 80 ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~ 155 (594)
T TIGR01394 80 EVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLD 155 (594)
T ss_pred HHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccccc
Confidence 899999999999999999853 23334455554443 35899999999998643311 1223333332 235
Q ss_pred CeEEEeecCCCC----------ChHHHHHHHHHHcCCC
Q 028507 146 VMFIETSAKAGF----------NIKPLFRKIAAALPGM 173 (208)
Q Consensus 146 ~~~~~~sa~~~~----------~i~~~~~~l~~~~~~~ 173 (208)
++++++||++|. ++..+|+.|.+.++.-
T Consensus 156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 689999999996 7999999999988744
No 204
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=7.1e-19 Score=146.10 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=102.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCcc----ceeeEEEEE------------EECCEEEEEEEEEcCCchhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI----GIDFLSKTM------------YLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~----~~~~~~~~~------------~~~~~~~~~~i~D~~G~~~~ 71 (208)
+..-|+++|++++|||||+++|.+..+......+. +........ .++.....+.||||||++.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 44579999999999999999999877643322211 211111110 00001123899999999999
Q ss_pred hhchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC----C--------CHHH
Q 028507 72 RSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ----V--------SIEE 136 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~----~--------~~~~ 136 (208)
..++..++..+|++++|+|+++ +++++.+.. +. ..++|+++++||+|+.+... . ....
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 9999889999999999999986 444444322 22 13589999999999864210 0 0000
Q ss_pred HH-----------HHHHh-------------c--CCeEEEeecCCCCChHHHHHHHHHHc
Q 028507 137 GE-----------AKSRE-------------L--NVMFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 137 ~~-----------~~~~~-------------~--~~~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
.. ....+ + ..+++++||++|+|+++++.+|....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00 00111 1 25899999999999999999887544
No 205
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=8.1e-22 Score=136.48 Aligned_cols=167 Identities=35% Similarity=0.542 Sum_probs=144.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCE-EEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
...-+++.|+|.-|+|||+++.+++...+...+..+++.++......++.. .+++.+||..|++++..+..-+++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 345689999999999999999999999999999999999988888777664 4579999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCccc-CCCHHHHHHHHHhcCC-eEEEeecCCCCC
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKR-QVSIEEGEAKSRELNV-MFIETSAKAGFN 158 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piivv~nK~D~~~~~-~~~~~~~~~~~~~~~~-~~~~~sa~~~~~ 158 (208)
.++|||+++..+|+.+..|.+.+.... +.++|++++.||+|..... .........+.+++|+ ..+++|++.+.+
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 999999999999999999999986543 3568899999999974322 2234677888999998 899999999999
Q ss_pred hHHHHHHHHHHcCC
Q 028507 159 IKPLFRKIAAALPG 172 (208)
Q Consensus 159 i~~~~~~l~~~~~~ 172 (208)
+.|+-..|.+++.-
T Consensus 182 i~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 182 IPEAQRELVEKILV 195 (229)
T ss_pred hhHHHHHHHHHHHh
Confidence 99999999887753
No 206
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.82 E-value=5e-19 Score=145.05 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=125.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc------hhhh-c
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSY-I 79 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~-~ 79 (208)
+++++++++|+||+|||||+|+|++.+......|..+.+.....+...++ .++++|+||.-.+... .+.+ +
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 45678999999999999999999998887888899888888888888775 4999999995543332 1222 3
Q ss_pred -cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 80 -RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 80 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
...|++|-|+|+++.+.-..+.-.+.+ -+.|++++.|++|..+.+.+. .+.++..+.+|+++++++|+.|.|
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G 151 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLYLTLQLLE------LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEG 151 (653)
T ss_pred cCCCCEEEEEcccchHHHHHHHHHHHHH------cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCC
Confidence 467999999999977654443322222 358999999999998776653 455778889999999999999999
Q ss_pred hHHHHHHHHHHcCCCc
Q 028507 159 IKPLFRKIAAALPGME 174 (208)
Q Consensus 159 i~~~~~~l~~~~~~~~ 174 (208)
+++++..+.+......
T Consensus 152 ~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 152 LEELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHHHhccccc
Confidence 9999999988765443
No 207
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=9.4e-19 Score=146.52 Aligned_cols=158 Identities=17% Similarity=0.156 Sum_probs=108.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC---cCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
-|+++|+.++|||||+++|++. .+..+.....+++.....+...++ ..+.|||+||+++|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4789999999999999999863 334444445555544444433222 358999999999997777777899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCcccCCC--HHHHHHHHHhcC---CeEEEeecCCCCChHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS--IEEGEAKSRELN---VMFIETSAKAGFNIKP 161 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 161 (208)
|+|+++.-. ....+.+. +.... ++| +++|+||+|+.+..... ..+...+....+ .+++++|+++|.|+++
T Consensus 81 VVda~eg~~-~qT~ehl~-il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVM-AQTREHLA-ILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCc-HHHHHHHH-HHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 999986211 11112222 22222 255 57899999997533211 233444444444 5899999999999999
Q ss_pred HHHHHHHHcCCC
Q 028507 162 LFRKIAAALPGM 173 (208)
Q Consensus 162 ~~~~l~~~~~~~ 173 (208)
+++.|.......
T Consensus 157 L~~~L~~~~~~~ 168 (614)
T PRK10512 157 LREHLLQLPERE 168 (614)
T ss_pred HHHHHHHhhccc
Confidence 999998876544
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=1.4e-18 Score=144.71 Aligned_cols=161 Identities=19% Similarity=0.266 Sum_probs=113.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc--CcCCCC------------CCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY--DKFDNT------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 74 (208)
-.+|+|+|+.++|||||+++|+. +.+... .....+++.......+..+.+++++|||||+.+|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 36899999999999999999996 333221 1233445555555555555588999999999999999
Q ss_pred hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC-CCHHHHHHHHHh-------cCC
Q 028507 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-VSIEEGEAKSRE-------LNV 146 (208)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~~ 146 (208)
+..+++.+|++|+|+|+++.... ....++..+.. .++|+++++||+|+...+. ....++...... ..+
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 99999999999999999863221 22233333222 3588899999999864332 112233333211 346
Q ss_pred eEEEeecCCCC----------ChHHHHHHHHHHcCCC
Q 028507 147 MFIETSAKAGF----------NIKPLFRKIAAALPGM 173 (208)
Q Consensus 147 ~~~~~sa~~~~----------~i~~~~~~l~~~~~~~ 173 (208)
+++.+||.+|. ++..+++.|.+.++.-
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 89999999998 5889999999988744
No 209
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=5.3e-19 Score=130.33 Aligned_cols=147 Identities=22% Similarity=0.257 Sum_probs=94.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC--C-----------------------------CCCCCccceeeEEEEEEECCEEEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF--D-----------------------------NTYQATIGIDFLSKTMYLEDRTVR 59 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 59 (208)
+|+|+|++|+|||||+++|+...- . .+..+..+++.....+...+ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 689999999999999999974321 1 01113334444444444444 56
Q ss_pred EEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC----CHH
Q 028507 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV----SIE 135 (208)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~----~~~ 135 (208)
+.+|||||+.+|.......+..+|++|+|+|++++..-. ... ...+....+ ..++++|+||+|+.+.... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~-~~~~~~~~~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRR-HSYILSLLG-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHH-HHHHHHHcC-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 899999999988766666789999999999998642211 111 112222222 1357788999998642211 123
Q ss_pred HHHHHHHhcCC---eEEEeecCCCCChHHH
Q 028507 136 EGEAKSRELNV---MFIETSAKAGFNIKPL 162 (208)
Q Consensus 136 ~~~~~~~~~~~---~~~~~sa~~~~~i~~~ 162 (208)
+...++..+++ +++++||+++.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 34444555553 5899999999998753
No 210
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=1e-18 Score=140.58 Aligned_cols=165 Identities=21% Similarity=0.180 Sum_probs=105.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcC---CCCCCCccceeeEEEEEE------------------EC--C----EEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMY------------------LE--D----RTV 58 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~------------------~~--~----~~~ 58 (208)
..++++|+++|+.++|||||+.+|.+... ..+.....++........ .+ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 35679999999999999999999965322 111122222221111000 00 0 135
Q ss_pred EEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC--CHHH
Q 028507 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEE 136 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~--~~~~ 136 (208)
.++|||+||+++|..........+|++++|+|++++.........+..+. ..+ ..|+++|+||+|+.+.... ..++
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~~-i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALD-IIG-IKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHH-HcC-CCcEEEEEEeeccccchhHHHHHHH
Confidence 79999999999887766666778899999999995421111111222222 221 2468899999999754332 1233
Q ss_pred HHHHHHhc---CCeEEEeecCCCCChHHHHHHHHHHcCC
Q 028507 137 GEAKSREL---NVMFIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 137 ~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
...++... +.+++++||+++.|+++++++|...++.
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 34444332 4689999999999999999999988754
No 211
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.81 E-value=8e-19 Score=119.30 Aligned_cols=135 Identities=21% Similarity=0.287 Sum_probs=98.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCC----chhhhhchhhhccCCcEEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~~i 86 (208)
||+++|+.|+|||||+++|.+... .+..|..+. +.-.++|||| +..+..-.......+|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~------------~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE------------YYDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE------------ecccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998665 333333221 1225599999 3334444444456999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~ 165 (208)
+|.|++++.+.-. ..+... -+.|+|=|+||+|+.. .....+.++.+....|+ .+|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999997643221 112222 2489999999999973 23356778888888888 7899999999999999998
Q ss_pred HH
Q 028507 166 IA 167 (208)
Q Consensus 166 l~ 167 (208)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 75
No 212
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.80 E-value=6.1e-19 Score=117.02 Aligned_cols=159 Identities=21% Similarity=0.263 Sum_probs=119.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.-+++||.++|..++|||||+..|.+... ....|+.+... +.+... +.+++++||.+|+...+..|..|+.+.|++
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~--k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNT--KKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcce--EEEeec-CcEEEEEEecCCccccchhhhhhhhccceE
Confidence 36789999999999999999999986653 33445555433 333333 347899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhc-----CCeEEEeecCCCCCh
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFIETSAKAGFNI 159 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~sa~~~~~i 159 (208)
|+|+|.+|...|+++...+-++... ....+|+.+..||.|+..+.... +....++.. -+.+-++|+.+++++
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e--eia~klnl~~lrdRswhIq~csals~eg~ 167 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE--EIALKLNLAGLRDRSWHIQECSALSLEGS 167 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH--HHHHhcchhhhhhceEEeeeCccccccCc
Confidence 9999999998899876666665443 33669999999999986544322 222222222 247889999999999
Q ss_pred HHHHHHHHHHc
Q 028507 160 KPLFRKIAAAL 170 (208)
Q Consensus 160 ~~~~~~l~~~~ 170 (208)
..-.+|+....
T Consensus 168 ~dg~~wv~sn~ 178 (185)
T KOG0074|consen 168 TDGSDWVQSNP 178 (185)
T ss_pred cCcchhhhcCC
Confidence 98888887544
No 213
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=2.1e-18 Score=122.54 Aligned_cols=151 Identities=23% Similarity=0.322 Sum_probs=97.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh----------hhhchhhhcc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIPSYIR 80 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~~~ 80 (208)
.|+++|.+|+|||||++.+.++.+.....++.+.+........++ .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996655444444444444443444433 799999999432 3333333333
Q ss_pred ---CCcEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC--HHHHHHHHH--hcCCeEEEe
Q 028507 81 ---DSSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSR--ELNVMFIET 151 (208)
Q Consensus 81 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~ 151 (208)
..+++++++|.++..+. ..+..|+. . ...|+++++||+|+....... ......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLE---E---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHH---H---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 46789999999765221 12223332 2 238999999999986433211 122222222 234589999
Q ss_pred ecCCCCChHHHHHHHHHHc
Q 028507 152 SAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 152 sa~~~~~i~~~~~~l~~~~ 170 (208)
|++++.++.+++++|.+.+
T Consensus 152 Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 152 SSLKGQGIDELRALIEKWL 170 (170)
T ss_pred ecCCCCCHHHHHHHHHHhC
Confidence 9999999999999998753
No 214
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=7e-18 Score=126.34 Aligned_cols=155 Identities=20% Similarity=0.219 Sum_probs=105.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC--------CC----------CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF--------DN----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
+|+++|+.|+|||||+++|+...- .. ......++......+.+.+ +++++|||||+.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 589999999999999999985311 00 0111222333334444444 689999999999998
Q ss_pred hchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc-----------------------
Q 028507 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK----------------------- 129 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~----------------------- 129 (208)
..+..+++.+|++++|+|+++.... ....++..+.. .++|+++++||+|+...
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p 154 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKV 154 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECC
Confidence 8888899999999999999865332 23344444433 35899999999998631
Q ss_pred ----------------------------------cCCCHHHHHHHHHh---cC--CeEEEeecCCCCChHHHHHHHHHHc
Q 028507 130 ----------------------------------RQVSIEEGEAKSRE---LN--VMFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 130 ----------------------------------~~~~~~~~~~~~~~---~~--~~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
.+++.++.....+. .+ +|++..||.++.|+..+++.|.+.+
T Consensus 155 ~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~ 234 (237)
T cd04168 155 GLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLF 234 (237)
T ss_pred cEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhc
Confidence 01111221111111 01 4888899999999999999999887
Q ss_pred C
Q 028507 171 P 171 (208)
Q Consensus 171 ~ 171 (208)
+
T Consensus 235 p 235 (237)
T cd04168 235 P 235 (237)
T ss_pred C
Confidence 5
No 215
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.80 E-value=4.4e-19 Score=142.21 Aligned_cols=168 Identities=25% Similarity=0.311 Sum_probs=126.4
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhcc
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|+..+..+.+||+++|..|+||||||-+|+...++..-.+-...- .....+....+..+|+|++..+.-.......++
T Consensus 1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i--~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI--LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc--ccCCccCcCcCceEEEecccccchhHHHHHHHh
Confidence 677788899999999999999999999999998865544332211 111233334467999999865554455566789
Q ss_pred CCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCCHHH-HHHHHHhcCC--eEEEeecC
Q 028507 81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNV--MFIETSAK 154 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~~~~-~~~~~~~~~~--~~~~~sa~ 154 (208)
.+|++++||+++++.+++.+ ..|+..+++..+ .++|||+|+||.|..+....+.+. ......++.- .-++|||+
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~ 158 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL 158 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence 99999999999999999996 678888887764 679999999999997765543333 3333333332 56899999
Q ss_pred CCCChHHHHHHHHHHc
Q 028507 155 AGFNIKPLFRKIAAAL 170 (208)
Q Consensus 155 ~~~~i~~~~~~l~~~~ 170 (208)
+..++.++|..-.+.+
T Consensus 159 ~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 159 TLANVSELFYYAQKAV 174 (625)
T ss_pred hhhhhHhhhhhhhhee
Confidence 9999999998766654
No 216
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.3e-19 Score=119.33 Aligned_cols=160 Identities=23% Similarity=0.341 Sum_probs=116.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
++++|.++|..|+||||++.++.-+..... .|+.+... ..+.. ++.++.+||..|+-..+..|+.++.+.|++|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnv--e~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNV--ETVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCc--ccccc--ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 789999999999999999998886665333 34444332 33333 45889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCcccCCCHH---HHHHHHHhcCCeEEEeecCCCCChHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i-~~~~~~~~piivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 163 (208)
|+|.+|.+.+......+..+ ......+..+++++||.|.......++. ......+..-+.++++||..|+|+++.+
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 99999988776654433333 3333344778889999998543221111 1111122223689999999999999999
Q ss_pred HHHHHHcCC
Q 028507 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
+||.+.+..
T Consensus 172 DWL~~~l~~ 180 (182)
T KOG0072|consen 172 DWLQRPLKS 180 (182)
T ss_pred HHHHHHHhc
Confidence 999988754
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.79 E-value=1.6e-18 Score=128.71 Aligned_cols=146 Identities=21% Similarity=0.205 Sum_probs=93.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc--C-----------------------------CCCCCCccceeeEEEEEEECCEEEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK--F-----------------------------DNTYQATIGIDFLSKTMYLEDRTVR 59 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (208)
+|+++|+.++|||||+.+|+... . ..+..+.++++.....+.+.+ .+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 58999999999999999986321 0 011123334444445555544 67
Q ss_pred EEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhh-----H-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc--C
Q 028507 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS-----F-LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--Q 131 (208)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-----~-~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~--~ 131 (208)
+.+|||||+..|.......+..+|++|+|+|+++... . ......+... ... ...|+++++||+|+.... .
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL-GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc-CCCeEEEEEEccccccccccH
Confidence 9999999998887766677889999999999987421 1 1112222222 222 226789999999987321 1
Q ss_pred CC----HHHHHHHHHhcC-----CeEEEeecCCCCChH
Q 028507 132 VS----IEEGEAKSRELN-----VMFIETSAKAGFNIK 160 (208)
Q Consensus 132 ~~----~~~~~~~~~~~~-----~~~~~~sa~~~~~i~ 160 (208)
.. ..++.......+ ++++++||++|.|+.
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11 122222333433 579999999999986
No 218
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=7.8e-18 Score=140.36 Aligned_cols=156 Identities=22% Similarity=0.268 Sum_probs=101.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCC----ccceeeEEEEEE--ECCEE-----E-----EEEEEEcCCchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA----TIGIDFLSKTMY--LEDRT-----V-----RLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~G~~~ 70 (208)
.+...|+++|++++|||||+++|.+..+...... +.+.+....... ..+.. . .++||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 5667899999999999999999986554322221 222111111100 00111 1 278999999999
Q ss_pred hhhchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC----C--------HH
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV----S--------IE 135 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~----~--------~~ 135 (208)
|..++...+..+|++++|+|+++ +++++.+.. +.. .++|+++++||+|+...... . ..
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99988888899999999999986 555554432 221 35899999999998521100 0 00
Q ss_pred -----------HHHHHHHhc---------------CCeEEEeecCCCCChHHHHHHHHHH
Q 028507 136 -----------EGEAKSREL---------------NVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 136 -----------~~~~~~~~~---------------~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
+........ ..+++++||++|.|+.++++.+...
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 011111111 2478999999999999999887653
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=3.5e-18 Score=126.49 Aligned_cols=113 Identities=25% Similarity=0.295 Sum_probs=78.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCC-------------------CCCccceeeEEEEEEE---CCEEEEEEEEEcCCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNT-------------------YQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ 68 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~ 68 (208)
+|+|+|+.|+|||||+++|+....... .....++......+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986543211 0011111111122211 345688999999999
Q ss_pred hhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 028507 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~ 127 (208)
.+|......++..+|++|+|+|+++..+... ..++..... .++|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888888999999999999986554432 233333322 348999999999985
No 220
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.78 E-value=5.5e-18 Score=127.15 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=118.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh-------chhhhccCCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d 83 (208)
.+.+||.|++|||||++.|...+......++++.....-.+.+++.. .+.+-|.||.-+-.. .+..++..++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 46799999999999999999888766666666666666666666543 499999999554222 2344578999
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCC
Q 028507 84 VAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGF 157 (208)
Q Consensus 84 ~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~ 157 (208)
.++||+|++.+ +.++.++.+..++..+.. .+.|.++|+||+|+.+.. ......++..+.- .++++||++++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecccc
Confidence 99999999988 788888887777766553 568899999999985322 1223455555554 49999999999
Q ss_pred ChHHHHHHHHHH
Q 028507 158 NIKPLFRKIAAA 169 (208)
Q Consensus 158 ~i~~~~~~l~~~ 169 (208)
++.++++.|.+.
T Consensus 354 gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 354 GLEELLNGLREL 365 (366)
T ss_pred chHHHHHHHhhc
Confidence 999999988764
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=1.1e-17 Score=134.18 Aligned_cols=159 Identities=18% Similarity=0.163 Sum_probs=105.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC----------------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.++++|+++|+.++|||||+++|++... ..+.....+++. ....+......+.+|||||+.+
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHH
Confidence 4679999999999999999999985211 111123333333 3333433446789999999999
Q ss_pred hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCcccCCC---HHHHHHHHHhcC-
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSRELN- 145 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~~~~---~~~~~~~~~~~~- 145 (208)
|.......+..+|++++|+|+++.-.. ...+.+..+.. .++| +++++||+|+.+..+.. ..+...++...+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 877777677899999999999853111 11222222222 2477 67889999986433221 224445544444
Q ss_pred ----CeEEEeecCCCC--------ChHHHHHHHHHHcC
Q 028507 146 ----VMFIETSAKAGF--------NIKPLFRKIAAALP 171 (208)
Q Consensus 146 ----~~~~~~sa~~~~--------~i~~~~~~l~~~~~ 171 (208)
++++++|+++|. ++.++++.+...++
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 489999999983 57788888888775
No 222
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=2e-17 Score=117.53 Aligned_cols=159 Identities=21% Similarity=0.220 Sum_probs=108.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCC----------chhhhhchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLIP 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~ 76 (208)
.....|+++|.+|||||||||+|++++-......+.|.+.....+.+++. +.++|.|| .+.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 45679999999999999999999998854445556666777777777764 89999999 333455555
Q ss_pred hhcc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCH--HHHH-HHHHhcCCe--E
Q 028507 77 SYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--EEGE-AKSRELNVM--F 148 (208)
Q Consensus 77 ~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~--~~~~-~~~~~~~~~--~ 148 (208)
.|+. +..++++++|+-.+- ......+-.+.... ++|+++++||+|.....+... .... .+....... +
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPP--KDLDREMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred HHHhhchhheEEEEEEECCCCC--cHHHHHHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence 5554 356888999997543 22222222333333 499999999999876544321 1111 111122222 8
Q ss_pred EEeecCCCCChHHHHHHHHHHcCC
Q 028507 149 IETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 149 ~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
+.+|+..+.|++++...|.+.+.+
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhhc
Confidence 889999999999999999887654
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=1.7e-17 Score=133.17 Aligned_cols=160 Identities=17% Similarity=0.160 Sum_probs=105.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcC-------cC---------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYD-------KF---------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
..++++|+++|++++|||||+++|++. .+ ..+.....+++. ....+......+.|+||||+.
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHH
Confidence 356899999999999999999999852 10 011122333333 333333334578999999999
Q ss_pred hhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCcccCC---CHHHHHHHHHhcC
Q 028507 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQV---SIEEGEAKSRELN 145 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~D~~~~~~~---~~~~~~~~~~~~~ 145 (208)
+|.......+..+|++++|+|+.+... ....+.+..+. . .++|.+ +++||+|+.+..+. ...++..++..++
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~-~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR-Q--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHH-H--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 887777777889999999999986321 12222233222 2 347755 57899999743221 1124444555443
Q ss_pred -----CeEEEeecCCCC----------ChHHHHHHHHHHcC
Q 028507 146 -----VMFIETSAKAGF----------NIKPLFRKIAAALP 171 (208)
Q Consensus 146 -----~~~~~~sa~~~~----------~i~~~~~~l~~~~~ 171 (208)
++++++|+.++. ++..+++.|...++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 689999999984 57788888887765
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=2.1e-17 Score=132.75 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=96.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcC----------------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
..++++|+++|+.++|||||+++|++... ..+..+..+++. ....+......+.||||||++
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence 45789999999999999999999974200 111223334443 334444444679999999999
Q ss_pred hhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCcccCCC---HHHHHHHHHhcC
Q 028507 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQVS---IEEGEAKSRELN 145 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~D~~~~~~~~---~~~~~~~~~~~~ 145 (208)
+|..........+|++++|+|+++.-... ..+.+..+.. .++|.+ +++||+|+.+..+.. ..+...++..++
T Consensus 87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 87 DYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 98776666678899999999998631111 1222222322 246754 679999987533211 234555666554
Q ss_pred -----CeEEEeecCCCC
Q 028507 146 -----VMFIETSAKAGF 157 (208)
Q Consensus 146 -----~~~~~~sa~~~~ 157 (208)
++++++|+.++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999875
No 225
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=3e-17 Score=124.01 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=118.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-----hhhch----h
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-----FRSLI----P 76 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----~~~~~----~ 76 (208)
+.....|+|.|.||||||||++.+++.+......|+++.......+.... .+++++||||.-+ .+..- .
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 34567899999999999999999999988777777777666666666555 5799999999322 11111 1
Q ss_pred hhccCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeec
Q 028507 77 SYIRDSSVAVVVYDVAS--RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSA 153 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa 153 (208)
..-.-.++++|+||.+. ..+.+.+..++.++..... .|+++|+||+|+.+...+ +++.......+. ....+++
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~ 318 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISA 318 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHH--HHHHHHHHhhccccccceee
Confidence 12235678999999984 3578888889999988875 899999999998765544 333333444444 4677888
Q ss_pred CCCCChHHHHHHHHHHcCC
Q 028507 154 KAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~~ 172 (208)
..+.+++.+-..+.....+
T Consensus 319 ~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 319 TKGCGLDKLREEVRKTALE 337 (346)
T ss_pred eehhhHHHHHHHHHHHhhc
Confidence 8899988888777777543
No 226
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.76 E-value=2.8e-17 Score=122.81 Aligned_cols=165 Identities=18% Similarity=0.197 Sum_probs=107.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh------------hh
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------------FR 72 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------------~~ 72 (208)
++.+-+.|+|+|.||+|||||.|.+++.+.........+.... ..-.+..+...+.|+||||.-. +.
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~-ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR-ILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeee-eeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 3567899999999999999999999999885544433332222 2222334457899999999321 11
Q ss_pred hchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC-------------CC--HHHH
Q 028507 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-------------VS--IEEG 137 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~-------------~~--~~~~ 137 (208)
......+..+|.+++|+|++++-.... -..+..+..+. .+|-++++||+|....+. +. ..+.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 122345779999999999996322111 12233333343 489999999999764321 11 1111
Q ss_pred HHHHHhc----------CC----eEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 138 EAKSREL----------NV----MFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 138 ~~~~~~~----------~~----~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
++..... |+ .+|.+||++|+|++++.++|...++.-
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 1111111 12 589999999999999999999988643
No 227
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=2.7e-17 Score=121.69 Aligned_cols=113 Identities=20% Similarity=0.250 Sum_probs=77.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC--CC--------------CCCCccceeeEEEEEEEC--------CEEEEEEEEEcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF--DN--------------TYQATIGIDFLSKTMYLE--------DRTVRLQLWDTA 66 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 66 (208)
+|+++|+.++|||||+.+|+...- .. +.....++......+.+. +..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999984321 10 111122222222223332 336789999999
Q ss_pred CchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 028507 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~ 127 (208)
|+.+|......+++.+|++++|+|+++....... ..+... ...++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~---~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQA---LKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHH---HHcCCCEEEEEECCCcc
Confidence 9999999999999999999999999865433332 222222 22358999999999975
No 228
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.75 E-value=5.1e-17 Score=120.65 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=94.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCC----------------Ccc-------ceeeEEEE-------------EEEC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQ----------------ATI-------GIDFLSKT-------------MYLE 54 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~----------------~~~-------~~~~~~~~-------------~~~~ 54 (208)
||+++|+.++|||||+++|..+.+..... .+. +.+..... -.+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999765532111 010 00100000 0011
Q ss_pred CEEEEEEEEEcCCchhhhhchhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC
Q 028507 55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (208)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~ 132 (208)
.....++++|+||+.+|.......+. .+|++++|+|++.... .....++..+. . .++|+++|+||+|+.++...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~-~--~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLAL-A--LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHH-H--cCCCEEEEEECccccCHHHH
Confidence 12357999999999998765554453 7899999999975422 12223333332 2 34889999999998654322
Q ss_pred C--HHHHHHHHHh--------------------------cCCeEEEeecCCCCChHHHHHHHHH
Q 028507 133 S--IEEGEAKSRE--------------------------LNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 133 ~--~~~~~~~~~~--------------------------~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
. ..+...+... ...+++.+|+.+|.|++++.+.|..
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 1 1122222211 1238999999999999998877643
No 229
>CHL00071 tufA elongation factor Tu
Probab=99.75 E-value=6.4e-17 Score=130.40 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=96.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcC----------------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
..+.++|+++|++++|||||+++|++... ..+..+..+++.... .+......+.++||||+.
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~--~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHV--EYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEE--EEccCCeEEEEEECCChH
Confidence 35679999999999999999999986411 111223333333333 333334578999999999
Q ss_pred hhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCcccCC---CHHHHHHHHHhcC
Q 028507 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN 145 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 145 (208)
+|.......+..+|++++|+|+...-. ....+.+..+. . .++| +++++||+|+.+..+. ...++..+....+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~-~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAK-Q--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHH-H--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 887777777889999999999985321 12222222222 2 2478 6788999999753321 1234444554443
Q ss_pred -----CeEEEeecCCCCC
Q 028507 146 -----VMFIETSAKAGFN 158 (208)
Q Consensus 146 -----~~~~~~sa~~~~~ 158 (208)
++++++|+.+|.+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 163 FPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCCcceEEEcchhhccc
Confidence 5899999998874
No 230
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.74 E-value=2.7e-17 Score=124.80 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=118.7
Q ss_pred EEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-------hhhchhhhccCCcE
Q 028507 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRDSSV 84 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~d~ 84 (208)
|.+||.|++|||||++.+...+......+.++....--.+... ....|.+-|.||.-+ +......++.++.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 5789999999999999999888776666776666666555552 234699999999543 22234556789999
Q ss_pred EEEEEeCCChh---hHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeE-EEeecCCCCC
Q 028507 85 AVVVYDVASRQ---SFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMF-IETSAKAGFN 158 (208)
Q Consensus 85 ~i~v~d~~~~~---s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~~sa~~~~~ 158 (208)
+++|+|++..+ ..++......++..+.. .+.|.+||+||+|+....+........+....+... +++|+.++++
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g 320 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREG 320 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccC
Confidence 99999998543 36666666666666543 568999999999976555444455555555555532 2299999999
Q ss_pred hHHHHHHHHHHcCCCc
Q 028507 159 IKPLFRKIAAALPGME 174 (208)
Q Consensus 159 i~~~~~~l~~~~~~~~ 174 (208)
++++...+.+.+....
T Consensus 321 ~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 321 LDELLRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999988887665
No 231
>COG2262 HflX GTPases [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=123.97 Aligned_cols=158 Identities=23% Similarity=0.280 Sum_probs=116.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh---------hhhchhhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI 79 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 79 (208)
-..|.++|-.|+|||||+|+|++........-+.+.+.....+.+.++ ..+.+.||.|.-+ |.++... .
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKSTLEE-V 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHHHHHH-h
Confidence 468999999999999999999977766555666667777777777652 4699999999332 3333332 5
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 028507 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 159 (208)
..+|++++|+|+++|+....+..-...+....-..+|+++|.||+|+...... ..... .... ..+.+||+++.|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~-~~~~~---~~~~-~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI-LAELE---RGSP-NPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh-hhhhh---hcCC-CeEEEEeccCcCH
Confidence 78999999999999976666666555555544456999999999998654431 11111 1112 5899999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028507 160 KPLFRKIAAALPGM 173 (208)
Q Consensus 160 ~~~~~~l~~~~~~~ 173 (208)
+.+++.|...+...
T Consensus 345 ~~L~~~i~~~l~~~ 358 (411)
T COG2262 345 DLLRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988643
No 232
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.73 E-value=9.9e-17 Score=130.13 Aligned_cols=149 Identities=17% Similarity=0.240 Sum_probs=100.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCc--C-----------------------------CCCCCCccceeeEEEEEEEC
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK--F-----------------------------DNTYQATIGIDFLSKTMYLE 54 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (208)
.-++++|+++|+.++|||||+.+|+... . ..+.....+++..... +.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~--~~ 81 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWK--FE 81 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEE--ec
Confidence 3567999999999999999999887311 0 1111223333333333 33
Q ss_pred CEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHH-------HHHHHHHHHHHhcCCCCc-EEEEEeCCCC
Q 028507 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFL-------NTSKWIDEVRTERGSDVI-IVLVGNKTDL 126 (208)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~p-iivv~nK~D~ 126 (208)
...+.++++|+|||++|.......+..+|++|+|+|+++ ..++ ...+.+. +... .++| +++++||+|+
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~-~~~~--~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHAL-LAFT--LGVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHH-HHHH--cCCCcEEEEEEcccC
Confidence 445789999999999999988888999999999999986 2232 2222222 2222 3464 6888999997
Q ss_pred Cccc--C----CCHHHHHHHHHhcC-----CeEEEeecCCCCChH
Q 028507 127 VEKR--Q----VSIEEGEAKSRELN-----VMFIETSAKAGFNIK 160 (208)
Q Consensus 127 ~~~~--~----~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~ 160 (208)
.+.. + ...+++..++...+ ++++++|+.+|+|+.
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 5211 1 11345566666665 579999999999985
No 233
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.73 E-value=8.1e-17 Score=129.62 Aligned_cols=147 Identities=23% Similarity=0.297 Sum_probs=94.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc--CC-------------------------------CCCCCccceeeEEEEEEECCE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK--FD-------------------------------NTYQATIGIDFLSKTMYLEDR 56 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~--~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 56 (208)
++|+++|+.++|||||+.+|+... .. .+.....+++.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 589999999999999999997321 10 11112233444444444444
Q ss_pred EEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCH--
Q 028507 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI-- 134 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~-- 134 (208)
.++.||||||+++|.......+..+|++++|+|+...- .........+....+ ..++++++||+|+.+......
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~--~~qt~~~~~~~~~~~-~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGV--LEQTRRHSYIASLLG-IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCC--ccccHHHHHHHHHcC-CCcEEEEEEecccccchHHHHHH
Confidence 57999999999999776667789999999999998532 221111122222322 245888999999865332111
Q ss_pred --HHHHHHHHhcC---CeEEEeecCCCCChHH
Q 028507 135 --EEGEAKSRELN---VMFIETSAKAGFNIKP 161 (208)
Q Consensus 135 --~~~~~~~~~~~---~~~~~~sa~~~~~i~~ 161 (208)
++...+....+ ++++++||++|+|+.+
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22222333334 4799999999999875
No 234
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.72 E-value=7.8e-17 Score=119.22 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=99.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCC-CccceeeEEEEEEECCEEEEEEEEEcCCchhhhh-----chhhhccCCcE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----LIPSYIRDSSV 84 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~~d~ 84 (208)
||+++|+.|+||||+.+.+.++..+.+.. -..+.+.....+...+ .+.+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~-~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS-FLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT-SCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC-CcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999988776543322 1122233333443333 36899999999875433 34566899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCcccC------CCHHHHHHHHHhcC---CeEEEeec
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTE--RGSDVIIVLVGNKTDLVEKRQ------VSIEEGEAKSRELN---VMFIETSA 153 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~piivv~nK~D~~~~~~------~~~~~~~~~~~~~~---~~~~~~sa 153 (208)
+|+|+|+.+.+-.+.+.++...+... ..++..+.++++|+|+..+.. ...+++...+...+ +.++.||.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999998444444455544444332 347899999999999865321 11233344444455 78999999
Q ss_pred CCCCChHHHHHHHHHHcC
Q 028507 154 KAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~ 171 (208)
.+ +.+-+.+..+.+.+-
T Consensus 160 ~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp TS-THHHHHHHHHHHTTS
T ss_pred cC-cHHHHHHHHHHHHHc
Confidence 98 588888888887664
No 235
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.72 E-value=1.4e-16 Score=116.48 Aligned_cols=157 Identities=14% Similarity=0.175 Sum_probs=94.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccce---eeEEEEEEECCEEEEEEEEEcCCchhhhhch-----hhhccC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI---DFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-----PSYIRD 81 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~~~ 81 (208)
+||+++|.+|+|||||+|+|.+...........+. +.....+... ....+.+||+||........ ...+..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 79999999999999999999986554322222221 1111111111 12368999999975322211 222567
Q ss_pred CcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCcccC-----------CCHHHHHHHH----HhcC
Q 028507 82 SSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-----------VSIEEGEAKS----RELN 145 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~~~-----------~~~~~~~~~~----~~~~ 145 (208)
+|++++|.+. ++... ..++..+... +.|+++|+||+|+..... ...++.+..+ ...+
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888542 23332 3444444443 488999999999853211 0011111111 1212
Q ss_pred ---CeEEEeecC--CCCChHHHHHHHHHHcCCCc
Q 028507 146 ---VMFIETSAK--AGFNIKPLFRKIAAALPGME 174 (208)
Q Consensus 146 ---~~~~~~sa~--~~~~i~~~~~~l~~~~~~~~ 174 (208)
-++|-+|+. .+.++..+.+.|...+++..
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 278999998 57899999999999887643
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.72 E-value=1.2e-16 Score=130.66 Aligned_cols=152 Identities=21% Similarity=0.267 Sum_probs=96.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcC--CC-------------------------------CCCCccceeeEEEEEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--DN-------------------------------TYQATIGIDFLSKTMY 52 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~~~ 52 (208)
....++|+++|+.++|||||+.+|+...- .. +.....+++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35679999999999999999999974321 10 0111233444434444
Q ss_pred ECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC
Q 028507 53 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (208)
Q Consensus 53 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~ 132 (208)
.++ ..+.||||||+..|.......+..+|++++|+|++.. +.........+....+ ..++++++||+|+.+....
T Consensus 104 ~~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G--~~~qt~~~~~l~~~lg-~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG--VLDQTRRHSFIATLLG-IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--ccccchHHHHHHHHhC-CCceEEEEEeeccccchhH
Confidence 433 5799999999998876555567999999999999753 2121111122222222 2468889999998743321
Q ss_pred CHHHH----HHHHHhc----CCeEEEeecCCCCChHHH
Q 028507 133 SIEEG----EAKSREL----NVMFIETSAKAGFNIKPL 162 (208)
Q Consensus 133 ~~~~~----~~~~~~~----~~~~~~~sa~~~~~i~~~ 162 (208)
...+. ..+.... ..+++++||++|.|+.++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 12222 2222332 368999999999998764
No 237
>PLN03126 Elongation factor Tu; Provisional
Probab=99.72 E-value=4.5e-16 Score=126.92 Aligned_cols=146 Identities=16% Similarity=0.120 Sum_probs=95.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCc------C----------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDK------F----------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.+.++|+++|+.++|||||+++|++.. . ..+.....+++.....+..++ ..+.++|+||+.+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~ 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHAD 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHH
Confidence 467999999999999999999998521 1 112223333333333343333 5789999999999
Q ss_pred hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCcccCC---CHHHHHHHHHhc--
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSREL-- 144 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~~~---~~~~~~~~~~~~-- 144 (208)
|.......+..+|++++|+|+.+.... ...+++..+. . .++| +++++||+|+.+..+. ...++..+....
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~-~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~ 232 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAK-Q--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF 232 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHH-H--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence 988777778899999999999854221 2223333222 2 2477 7788999998753221 112344444443
Q ss_pred ---CCeEEEeecCCCCC
Q 028507 145 ---NVMFIETSAKAGFN 158 (208)
Q Consensus 145 ---~~~~~~~sa~~~~~ 158 (208)
.++++++|+.++.+
T Consensus 233 ~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 233 PGDDIPIISGSALLALE 249 (478)
T ss_pred CcCcceEEEEEcccccc
Confidence 45899999988753
No 238
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=4.3e-16 Score=124.77 Aligned_cols=159 Identities=19% Similarity=0.253 Sum_probs=115.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECC-EEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
+..=|+++|+...|||||+..+..........-..+-......+..+. ..-.++|+|||||+.|..+..+-..-+|.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 446689999999999999999987776554444443333344444431 2246999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC---------CeEEEeecCCCC
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGF 157 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~~~ 157 (208)
+|++++|. +... ..+.+......++|+++++||+|..+ .+.........++| ..++++||++|+
T Consensus 84 LVVa~dDG--v~pQ--TiEAI~hak~a~vP~iVAiNKiDk~~---~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDG--VMPQ--TIEAINHAKAAGVPIVVAINKIDKPE---ANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCC--cchh--HHHHHHHHHHCCCCEEEEEecccCCC---CCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 99999952 2221 12223333335699999999999873 33445554455544 368999999999
Q ss_pred ChHHHHHHHHHHcCCC
Q 028507 158 NIKPLFRKIAAALPGM 173 (208)
Q Consensus 158 ~i~~~~~~l~~~~~~~ 173 (208)
|+.+|+..+.-...-+
T Consensus 157 Gi~eLL~~ill~aev~ 172 (509)
T COG0532 157 GIDELLELILLLAEVL 172 (509)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999887766544
No 239
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.72 E-value=3.5e-16 Score=121.39 Aligned_cols=162 Identities=19% Similarity=0.248 Sum_probs=101.3
Q ss_pred EEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEE---------------------CC-EEEEEEEEEcCCc-
Q 028507 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL---------------------ED-RTVRLQLWDTAGQ- 68 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~G~- 68 (208)
|+++|.|++|||||+++|++........|.++++.......+ ++ ..+.+.+||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999988764444444443333222211 22 3367999999997
Q ss_pred ---hhhhhchhh---hccCCcEEEEEEeCCCh-------------hhHHHHHHHHHHHHH--------------------
Q 028507 69 ---ERFRSLIPS---YIRDSSVAVVVYDVASR-------------QSFLNTSKWIDEVRT-------------------- 109 (208)
Q Consensus 69 ---~~~~~~~~~---~~~~~d~~i~v~d~~~~-------------~s~~~~~~~~~~i~~-------------------- 109 (208)
.+...+... .++.+|++++|+|+++. +...++.....++..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334443333 48999999999999730 111111110000000
Q ss_pred ---------------------------h----------------------cCCCCcEEEEEeCCCCCcccCCCHHHHHHH
Q 028507 110 ---------------------------E----------------------RGSDVIIVLVGNKTDLVEKRQVSIEEGEAK 140 (208)
Q Consensus 110 ---------------------------~----------------------~~~~~piivv~nK~D~~~~~~~~~~~~~~~ 140 (208)
. ....+|+++++||.|+...... .+ ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~--~~-~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN--IS-KLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH--HH-HHH
Confidence 0 0124799999999997533221 11 111
Q ss_pred HHhcCCeEEEeecCCCCChHHHHH-HHHHHcCCCccc
Q 028507 141 SRELNVMFIETSAKAGFNIKPLFR-KIAAALPGMETL 176 (208)
Q Consensus 141 ~~~~~~~~~~~sa~~~~~i~~~~~-~l~~~~~~~~~~ 176 (208)
.......++.+||+.+.++.++.+ .+.+.+++-+..
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f 274 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDF 274 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCc
Confidence 222245899999999999999998 699999765443
No 240
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=5.4e-16 Score=124.48 Aligned_cols=159 Identities=17% Similarity=0.151 Sum_probs=103.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC----------------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.++++|+++|+.++|||||+++|++... ..+..+..+++.. ...+......+.++||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHHH
Confidence 5689999999999999999999986311 1111233333433 333433345789999999998
Q ss_pred hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCcccCC---CHHHHHHHHHhc--
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQV---SIEEGEAKSREL-- 144 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~D~~~~~~~---~~~~~~~~~~~~-- 144 (208)
|.......+..+|++++|+|+.+.-. ....+.+..+. . .++|.+ +++||+|+.+.... ...++..+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~-~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR-Q--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHH-H--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 87777777899999999999985321 12223333332 2 247865 57899998642221 112333344333
Q ss_pred ---CCeEEEeecCCCC----------ChHHHHHHHHHHcC
Q 028507 145 ---NVMFIETSAKAGF----------NIKPLFRKIAAALP 171 (208)
Q Consensus 145 ---~~~~~~~sa~~~~----------~i~~~~~~l~~~~~ 171 (208)
.++++++|+.++. ++..+++.|...++
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 3589999999875 45677777777654
No 241
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.71 E-value=2.5e-16 Score=120.47 Aligned_cols=143 Identities=13% Similarity=0.176 Sum_probs=94.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCC----------CCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh-----
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----- 73 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 73 (208)
.++|+++|.+|+|||||+|+|++..+... ..++..+......+..++..+++.||||||......
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999998876433 234444555556666777778999999999432211
Q ss_pred ---------------------chhhhcc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCcc
Q 028507 74 ---------------------LIPSYIR--DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (208)
Q Consensus 74 ---------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~ 129 (208)
.....+. .+|+++++++.+.. .+... ...+..+. ..+|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence 0101222 46777888877642 11111 22233332 25899999999998653
Q ss_pred c--CCCHHHHHHHHHhcCCeEEEeecCCC
Q 028507 130 R--QVSIEEGEAKSRELNVMFIETSAKAG 156 (208)
Q Consensus 130 ~--~~~~~~~~~~~~~~~~~~~~~sa~~~ 156 (208)
. ......+...+..+++.++.....+.
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~~ 187 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPEDEE 187 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence 3 23456667778888999888765433
No 242
>PLN03127 Elongation factor Tu; Provisional
Probab=99.71 E-value=5.4e-16 Score=125.76 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=101.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC------c----------CCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD------K----------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.+.++|+++|+.++|||||+++|.+. . ...+..+..+++..... +......+.|+||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCCeEEEEEECCCccc
Confidence 46799999999999999999999621 1 01222244444443333 433446789999999998
Q ss_pred hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCcccCCCH---HHHHHHHHhc--
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSI---EEGEAKSREL-- 144 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~~~~~---~~~~~~~~~~-- 144 (208)
|.......+..+|++++|+|+++... ....+.+..+. . .++| +++++||+|+.+..+... .+...+....
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~-~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR-Q--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHH-H--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 87766666778999999999975321 11122222222 2 3478 567899999975322111 1222333322
Q ss_pred ---CCeEEEeecC---CCCC-------hHHHHHHHHHHcC
Q 028507 145 ---NVMFIETSAK---AGFN-------IKPLFRKIAAALP 171 (208)
Q Consensus 145 ---~~~~~~~sa~---~~~~-------i~~~~~~l~~~~~ 171 (208)
.++++++|+. ++.+ +..+++.|...++
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2578888875 4544 6788888888765
No 243
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.71 E-value=6.5e-16 Score=117.62 Aligned_cols=114 Identities=21% Similarity=0.235 Sum_probs=77.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc--CCCC--------------------CCCccceeeEEEEEEECCEEEEEEEEEcCC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK--FDNT--------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (208)
.+|+|+|++|+|||||+++|+... .... .....++......+.+ +.+++++|||||
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~--~~~~i~liDTPG 80 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY--RDCVINLLDTPG 80 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee--CCEEEEEEECCC
Confidence 579999999999999999998421 1100 0011222233334444 447899999999
Q ss_pred chhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc
Q 028507 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~ 129 (208)
+.+|.......++.+|++|+|+|+++... .....++.... ..++|+++++||+|+...
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence 99988877778899999999999986422 12223333222 235899999999997543
No 244
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.71 E-value=3.6e-16 Score=126.64 Aligned_cols=165 Identities=18% Similarity=0.148 Sum_probs=106.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC---CCCCCCccceeeEEEEE---------------EECC-------------
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTM---------------YLED------------- 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~~------------- 55 (208)
..+++|.++|+..+|||||+.+|++... ..+.....+++.-.... ....
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4679999999999999999999996432 22222222222111110 0000
Q ss_pred ---EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC
Q 028507 56 ---RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (208)
Q Consensus 56 ---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~ 132 (208)
-...+.|+|+|||+.|.......+..+|++++|+|+++........+.+. +....+ -.++++++||+|+.+....
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg-i~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK-LKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC-CCcEEEEEecccccCHHHH
Confidence 02368999999999998877777889999999999986311111122222 222332 2468889999998753221
Q ss_pred --CHHHHHHHHHh---cCCeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 133 --SIEEGEAKSRE---LNVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 133 --~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
..+++..+... .+.+++++||++|.|++.+++.|.+.++..
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 12233333222 356999999999999999999999877543
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.71 E-value=4.3e-16 Score=126.48 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=97.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC--cC-----------------------------CCCCCCccceeeEEEEEEECC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KF-----------------------------DNTYQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (208)
.++++|+++|+.++|||||+.+|+.. .. ..+.....+++.....+. .
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~--~ 82 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE--T 82 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc--c
Confidence 46799999999999999999998741 11 111222333444333333 3
Q ss_pred EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCc
Q 028507 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF---LNTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~ 128 (208)
....++|+|+|||.+|.......+..+|++|+|+|++... .+ ....+.+. +... .++| +++++||+|...
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~--~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT--LGVKQMIVCINKMDDKT 159 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH--cCCCeEEEEEEcccccc
Confidence 4478999999999999888888889999999999998531 01 12222222 2222 2366 678999999432
Q ss_pred --ccCCC----HHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 028507 129 --KRQVS----IEEGEAKSRELN-----VMFIETSAKAGFNIKP 161 (208)
Q Consensus 129 --~~~~~----~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 161 (208)
..+.. ..++..+....+ ++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 233333333333 5799999999999863
No 246
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=3.7e-16 Score=124.80 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=116.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC---------------CCCCCCccceeeEEEE-EEECCEEEEEEEEEcCCchhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF---------------DNTYQATIGIDFLSKT-MYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~~~~ 71 (208)
+--++.|+-+...|||||..+|+...- .-+.+..+++.-.... +..++..+.++++|||||.+|
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 346789999999999999999973211 1123334444333332 333467789999999999999
Q ss_pred hhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC-HHHHHHHHHhcCCeEEE
Q 028507 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELNVMFIE 150 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~ 150 (208)
.......+..|+|+|+|+|++..-....+..++..+.. +.-+|.|+||+|+..++... ..+..........+.+.
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~ 214 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIY 214 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEE
Confidence 99999999999999999999965444555555655543 47789999999997654211 12222223333458999
Q ss_pred eecCCCCChHHHHHHHHHHcCCC
Q 028507 151 TSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 151 ~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
+||++|.++.++++.|++.++.-
T Consensus 215 vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 215 VSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred EEeccCccHHHHHHHHHhhCCCC
Confidence 99999999999999999999754
No 247
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.4e-16 Score=108.62 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=115.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.-|++++|..|+|||||++.|...+..... ||. ......+.+.+ .+++.+|.+||..-+..|..++..+|++++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhv-PTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHV-PTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccC-CCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 4568999999999999999999977664322 111 12233344544 679999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhc--------------C---CeEE
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL--------------N---VMFI 149 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~--------------~---~~~~ 149 (208)
.+|+-|.+.+.+....++.+.... -..+|+++.+||+|...+- +.++.+...... + +.++
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 999999999998887777765443 2569999999999986543 333332221111 1 2578
Q ss_pred EeecCCCCChHHHHHHHHHHc
Q 028507 150 ETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~ 170 (208)
.+|...+.+..+.|.|+...+
T Consensus 172 mcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEccCccceeeeehhhhc
Confidence 888888888888888877654
No 248
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=5.7e-16 Score=122.02 Aligned_cols=173 Identities=17% Similarity=0.176 Sum_probs=124.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc--C-------------CCCCCCccceeeEEEEEEE---CCEEEEEEEEEcCCch
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK--F-------------DNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~--~-------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~ 69 (208)
+--+..++.+-..|||||..+|+... . +-+....+++......+.+ ++..+.++++|||||-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 34577888999999999999987321 1 1233344444444444433 4578999999999999
Q ss_pred hhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC---
Q 028507 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--- 146 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 146 (208)
+|.-...+.+..|.|.++|+|++..-....+...|..+.. +.-++.|+||+|+..+.. ..-.++...-.|+
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~~ 161 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDAS 161 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCH--HHHHHHHHHHhCCCcc
Confidence 9998888889999999999999965444556777776654 477899999999976543 1222333344555
Q ss_pred eEEEeecCCCCChHHHHHHHHHHcCCCcccccccccccccc
Q 028507 147 MFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDV 187 (208)
Q Consensus 147 ~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 187 (208)
..+.+||++|.|+.++++.|++.++.-. ..+..+++.+..
T Consensus 162 dav~~SAKtG~gI~~iLe~Iv~~iP~P~-g~~~~pLkALif 201 (603)
T COG0481 162 DAVLVSAKTGIGIEDVLEAIVEKIPPPK-GDPDAPLKALIF 201 (603)
T ss_pred hheeEecccCCCHHHHHHHHHhhCCCCC-CCCCCcceEEEE
Confidence 6799999999999999999999997544 444555554443
No 249
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=7e-16 Score=117.55 Aligned_cols=112 Identities=21% Similarity=0.284 Sum_probs=79.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhc--CcC----------------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh
Q 028507 11 KLVFLGDQSVGKTSIITRFMY--DKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
+|+++|++|+|||||+++|+. +.. +.+.....+++.....+.+.+ +++.+|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 589999999999999999973 111 112233444555555566655 679999999999888
Q ss_pred hchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
..+...++.+|++|+|+|+.+..... ....+..+.. .++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 88888999999999999998532211 1222232322 3589999999999864
No 250
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.69 E-value=6.4e-16 Score=130.96 Aligned_cols=153 Identities=22% Similarity=0.238 Sum_probs=95.9
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHhhcCcC--CC-------------------------------CCCCccceeeEEEE
Q 028507 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKF--DN-------------------------------TYQATIGIDFLSKT 50 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKstli~~l~~~~~--~~-------------------------------~~~~~~~~~~~~~~ 50 (208)
++....++|+++|++++|||||+++|+...- .. +.....+++.....
T Consensus 19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 3445678999999999999999999985321 10 00112223333333
Q ss_pred EEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 51 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 51 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
+..++ ..+.|+||||+++|.......+..+|++++|+|++....-.. .+.+..+ ...+ ..++++++||+|+.+..
T Consensus 99 ~~~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~-~~~~-~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 99 FATPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIA-SLLG-IRHVVLAVNKMDLVDYD 173 (632)
T ss_pred EccCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHH-HHhC-CCeEEEEEEecccccch
Confidence 33333 568899999999887666667889999999999975321111 1111112 2222 25688899999986422
Q ss_pred CCCH----HHHHHHHHhcCC---eEEEeecCCCCChHH
Q 028507 131 QVSI----EEGEAKSRELNV---MFIETSAKAGFNIKP 161 (208)
Q Consensus 131 ~~~~----~~~~~~~~~~~~---~~~~~sa~~~~~i~~ 161 (208)
.... .+...+....++ +++++||++|.|+.+
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 2111 222233344443 699999999999874
No 251
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.68 E-value=1.7e-15 Score=125.04 Aligned_cols=116 Identities=21% Similarity=0.234 Sum_probs=78.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhc--CcCC------C--------------CCCCccceeeEEEEEEECCEEEEEEEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMY--DKFD------N--------------TYQATIGIDFLSKTMYLEDRTVRLQLWD 64 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~--~~~~------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 64 (208)
.+..+|+|+|++++|||||.++|+. +... . ......++......+.+++ +.+++||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inliD 85 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLLD 85 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEEE
Confidence 3457999999999999999999973 2110 0 0001122223333444444 7799999
Q ss_pred cCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
|||+.+|.......+..+|++|+|+|+++.-. .....++.... ..++|+++++||+|+..
T Consensus 86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~---~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCR---LRDTPIFTFINKLDRDG 145 (526)
T ss_pred CCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHH---hcCCCEEEEEECCcccc
Confidence 99999998877778899999999999986321 11223332222 24699999999999753
No 252
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=4e-16 Score=119.36 Aligned_cols=153 Identities=15% Similarity=0.157 Sum_probs=96.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCC------------------CCccceeeEEEEEEECCEEEEEEEEEcCCchhhh
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTY------------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
+|+++|++|+|||||+++|+........ ....++......+.+++ +.+.+|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999999743211000 01122223333444444 679999999999888
Q ss_pred hchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeE--EE
Q 028507 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMF--IE 150 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~ 150 (208)
..+..++..+|++++|+|+++....... ..+..+.. .++|+++++||+|..... .......+...++.++ +.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTE-KLWEFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 8888889999999999999865433322 22222322 358999999999986532 1222233333445433 44
Q ss_pred eecCCCCChHHHHHHHHHHcC
Q 028507 151 TSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 151 ~sa~~~~~i~~~~~~l~~~~~ 171 (208)
+...++.++..+.+.+.....
T Consensus 153 ip~~~~~~~~~~vd~~~~~~~ 173 (268)
T cd04170 153 LPIGEGDDFKGVVDLLTEKAY 173 (268)
T ss_pred ecccCCCceeEEEEcccCEEE
Confidence 456677776666555554443
No 253
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.67 E-value=2.6e-15 Score=100.53 Aligned_cols=106 Identities=20% Similarity=0.262 Sum_probs=70.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh---------hhchhhhcc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYIR 80 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~~~~~~~~~ 80 (208)
+|+|+|.+|+|||||+|+|++... .....+..+.......+.+++. .+.++||||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998643 2233333333444455566764 4689999995421 111233358
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 028507 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 123 (208)
.+|++++|+|++++.. +.....+..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999877322 22334444442 45999999998
No 254
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=1.6e-15 Score=129.74 Aligned_cols=116 Identities=21% Similarity=0.296 Sum_probs=82.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC--------CC-----C-----CCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--------DN-----T-----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~--------~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
....+|+|+|+.|+|||||+++|+...- .. + .....++......+.+.+ +.+++|||||+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~ 83 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH 83 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence 3568999999999999999999984211 00 0 011222233333444444 78999999999
Q ss_pred hhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
.+|...+..+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 99988888999999999999999876554443333 22322 3589999999999864
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.67 E-value=1.4e-16 Score=113.03 Aligned_cols=118 Identities=18% Similarity=0.348 Sum_probs=72.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEE-CCEEEEEEEEEcCCchhhhhchhh---hccCCcE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPS---YIRDSSV 84 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~ 84 (208)
.-.|+++|+.|+|||+|+..|..+.......+. . ... .... ......+.++|+|||++.+..... +...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e--~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-E--NNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-S--EEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-c--CCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 457899999999999999999998654433332 1 111 1111 122246999999999988764444 3788999
Q ss_pred EEEEEeCCC-hhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCccc
Q 028507 85 AVVVYDVAS-RQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 85 ~i~v~d~~~-~~s~~~~~~~~~~i~~~~---~~~~piivv~nK~D~~~~~ 130 (208)
+|||+|.+. +..+..+.+++-.+.... ...+|++|++||.|+....
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 999999974 445556555544443322 3679999999999986543
No 256
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.3e-15 Score=118.48 Aligned_cols=153 Identities=22% Similarity=0.287 Sum_probs=104.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCc--C-----------------------------CCCCCCccceeeEEEEEEEC
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK--F-----------------------------DNTYQATIGIDFLSKTMYLE 54 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (208)
..++++++++|+..+|||||+-+|+... + .++... +.+.......+.
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERer--GvTi~~~~~~fe 81 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERER--GVTIDVAHSKFE 81 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhc--ceEEEEEEEEee
Confidence 3568999999999999999999987431 1 112222 333344444444
Q ss_pred CEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChh---h--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc
Q 028507 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---S--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (208)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s--~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~ 129 (208)
...+.++|+|+|||.+|....-..+.++|+.|+|+|+.+.+ + ...+.+....+.+..+ --.+||++||+|..+-
T Consensus 82 t~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~w 160 (428)
T COG5256 82 TDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSW 160 (428)
T ss_pred cCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEccccccc
Confidence 45578999999999999888888889999999999998753 1 2233444444444444 2447888899999874
Q ss_pred cCCCHHHHHH----HHHhcC-----CeEEEeecCCCCChHH
Q 028507 130 RQVSIEEGEA----KSRELN-----VMFIETSAKAGFNIKP 161 (208)
Q Consensus 130 ~~~~~~~~~~----~~~~~~-----~~~~~~sa~~~~~i~~ 161 (208)
++-.++++.. +.+..| ++++++|+..|.|+.+
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 4433333322 333333 4699999999999764
No 257
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.66 E-value=3.6e-15 Score=108.99 Aligned_cols=159 Identities=11% Similarity=0.126 Sum_probs=98.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCC--CccceeeEEEEEEECCEEEEEEEEEcCCchhhhh--------c---hh
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------L---IP 76 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~---~~ 76 (208)
++|+++|.+|+|||||+|++++........ +..+.........+.+ ..+.++||||..+... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999876543321 2222233333334444 5699999999654321 1 11
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCcccCCC------HHHHHHHHHhcCCeE
Q 028507 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQVS------IEEGEAKSRELNVMF 148 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~ 148 (208)
....+.|++++|+++.+. +. .-...++.+....++ -.++++++|+.|......+. ....+......+-.+
T Consensus 79 ~~~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 224678999999999862 21 123334445444432 25688889999876543211 123333444445555
Q ss_pred EEeec-----CCCCChHHHHHHHHHHcCC
Q 028507 149 IETSA-----KAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 149 ~~~sa-----~~~~~i~~~~~~l~~~~~~ 172 (208)
+.++. ..+.++.++++.|.+++.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 55554 4567888999999888865
No 258
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.66 E-value=5.2e-15 Score=122.16 Aligned_cols=116 Identities=21% Similarity=0.251 Sum_probs=78.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhc--CcCCC------C------------CCCccceeeEEEEEEECCEEEEEEEEEcC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMY--DKFDN------T------------YQATIGIDFLSKTMYLEDRTVRLQLWDTA 66 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~--~~~~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 66 (208)
.+..+|+|+|++++|||||+++|+. +.... . .....+++.......++.+.+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999863 21100 0 00111233333333333344789999999
Q ss_pred CchhhhhchhhhccCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 028507 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~D~~ 127 (208)
|+.+|.......+..+|++|+|+|+++. +.. ...++... .. .++|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~g--v~~~t~~l~~~~-~~--~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKG--VETRTRKLMEVT-RL--RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHH-Hh--cCCCEEEEEECcccc
Confidence 9998887777788999999999999853 222 23333322 22 458999999999984
No 259
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.66 E-value=1.2e-15 Score=120.02 Aligned_cols=182 Identities=19% Similarity=0.305 Sum_probs=124.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCc--CC------------CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDK--FD------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 74 (208)
--+|+|+.+...|||||+..|+.+. |. .......+++...+...+..+.++++|+|||||.+|..-
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 3689999999999999999998432 21 122233455655555444444489999999999999999
Q ss_pred hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC-HHHHHHHH-------HhcCC
Q 028507 75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKS-------RELNV 146 (208)
Q Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~-------~~~~~ 146 (208)
.+..+...|++++++|+.+. .....++...-.-. .+.+.|+|+||+|...++... .++.-.+. .++++
T Consensus 85 VERvl~MVDgvlLlVDA~EG--pMPQTrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEG--PMPQTRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccC--CCCchhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 99999999999999999852 22233333322222 235567778999987654311 12222222 23467
Q ss_pred eEEEeecCCCC----------ChHHHHHHHHHHcCCCc-cccccccccccccccccccC
Q 028507 147 MFIETSAKAGF----------NIKPLFRKIAAALPGME-TLSSTKQEEMVDVNLRSTTG 194 (208)
Q Consensus 147 ~~~~~sa~~~~----------~i~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 194 (208)
++++.|+..|. ++..+|+.|.++++.-. +...+-|.+...+++.+..+
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~G 219 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVG 219 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccc
Confidence 99999998764 68899999999998554 23445566666777776554
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=9.6e-16 Score=121.23 Aligned_cols=163 Identities=18% Similarity=0.205 Sum_probs=113.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-hhhc--------hhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSL--------IPS 77 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~--------~~~ 77 (208)
..++|+|+|+||+|||||+|.|..... ..+..+.++.+.....+.++| +++.+.||+|..+ -... -..
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 458999999999999999999997665 456778888888888888888 7899999999766 1111 123
Q ss_pred hccCCcEEEEEEeCC--ChhhHHHHHHHHHHHHHhcC------CCCcEEEEEeCCCCCcc-cCCCHHHHHHHHHhc---C
Q 028507 78 YIRDSSVAVVVYDVA--SRQSFLNTSKWIDEVRTERG------SDVIIVLVGNKTDLVEK-RQVSIEEGEAKSREL---N 145 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~------~~~piivv~nK~D~~~~-~~~~~~~~~~~~~~~---~ 145 (208)
.+..+|++++|+|+. +-++-..+.+.+.....-.. ...+++++.||.|+... .+....- ..+.... .
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~ 423 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSV 423 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCcc
Confidence 467899999999994 33333334455554433222 34789999999999765 2222111 1111111 1
Q ss_pred C-eEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 146 V-MFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 146 ~-~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
. .+.++|++++++++.+.+.+.+.+...
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 2 456699999999999999888877533
No 261
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6.7e-15 Score=117.78 Aligned_cols=178 Identities=17% Similarity=0.171 Sum_probs=123.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCC--CCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
.+..-|-|+|+...|||||+..|......... ..|..+..+...+. +| -.++|.|||||..|..|..+...-+|+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccE
Confidence 35677899999999999999999876653322 22333333444443 44 579999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC---------CeEEEeecCC
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKA 155 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~sa~~ 155 (208)
+|+|+.++|. +.. ..++.|.....-++|+++.+||+|..+ .+.+.+.+.....| ..++++||++
T Consensus 228 vVLVVAadDG--Vmp--QT~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 228 VVLVVAADDG--VMP--QTLEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred EEEEEEccCC--ccH--hHHHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 9999999863 211 122334334445799999999999653 34566666555554 3689999999
Q ss_pred CCChHHHHHHHHHHcCCCccc-cccccccccccccccccC
Q 028507 156 GFNIKPLFRKIAAALPGMETL-SSTKQEEMVDVNLRSTTG 194 (208)
Q Consensus 156 ~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (208)
|.|++.+-+.+.-...-+.-+ .+..+.+-..++.+-+.+
T Consensus 301 g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg 340 (683)
T KOG1145|consen 301 GENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKG 340 (683)
T ss_pred CCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCC
Confidence 999999988887665433333 244444444555554443
No 262
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.65 E-value=7.9e-15 Score=110.76 Aligned_cols=154 Identities=21% Similarity=0.226 Sum_probs=112.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh-------hhchhhhccC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRD 81 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 81 (208)
.-.+++||+|++|||||++.|++-+......++++.+...-.+.+++ ..++++|+||.-.- ....-..+++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 46899999999999999999998887777777777888888888888 66999999985432 1234556899
Q ss_pred CcEEEEEEeCCChhh-HHHHHHHHHHHHHh--------------------------------------------------
Q 028507 82 SSVAVVVYDVASRQS-FLNTSKWIDEVRTE-------------------------------------------------- 110 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~-------------------------------------------------- 110 (208)
||.+++|+|+..+.. .+.+.+.+....-.
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999985443 33343333322100
Q ss_pred ---------------cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 111 ---------------RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 111 ---------------~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
...-+|.++|.||+|+.. .++........ .++.+||..+.|++++.+.|-+.+.
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 011377888899999755 22333333332 7899999999999999999988774
No 263
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=1.3e-15 Score=112.76 Aligned_cols=162 Identities=20% Similarity=0.297 Sum_probs=107.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCC--CccceeeEEEEEEECCEEEEEEEEEcCCchh-------hhhchh
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIP 76 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~ 76 (208)
....++|+++|..|+|||||+|+|+++...+... .++.++... ...+++ -.+.+||+||..+ +.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~-~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRL-RLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhH-Hhhccc--cceEEecCCCcccchhhhHHHHHHHH
Confidence 4567999999999999999999999765433221 111111111 112233 4599999999654 677788
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc--------CCCHH-------HHHHHH
Q 028507 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--------QVSIE-------EGEAKS 141 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~--------~~~~~-------~~~~~~ 141 (208)
.++...|.++++.++.|++--.... ++..+.... .+.++++++|..|+..+. ..+.. ++....
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~ 190 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTDED-FLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG 190 (296)
T ss_pred HHhhhccEEEEeccCCCccccCCHH-HHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence 8899999999999999875333333 334443332 237899999999987641 11111 111111
Q ss_pred Hhc--CCeEEEeecCCCCChHHHHHHHHHHcCC
Q 028507 142 REL--NVMFIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 142 ~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
+.. =.+++.++...+.|++++...++..++.
T Consensus 191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 191 RLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 111 1378889999999999999999999873
No 264
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=6.2e-15 Score=104.94 Aligned_cols=155 Identities=25% Similarity=0.327 Sum_probs=101.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhcc---CCcEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR---DSSVAV 86 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~~i 86 (208)
-.|+++|+.++|||+|+-+|..+.+... .++++.......+... ..+++|.|||.+.+.-...++. .+-++|
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~T---vtSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV 113 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGT---VTSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV 113 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCe---eeeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence 4689999999999999999998854332 2223333444444443 3899999999998776666666 799999
Q ss_pred EEEeCCC-hhhHHHHH-HHHHHHHHh--cCCCCcEEEEEeCCCCCcccCCCH------HHH-------------------
Q 028507 87 VVYDVAS-RQSFLNTS-KWIDEVRTE--RGSDVIIVLVGNKTDLVEKRQVSI------EEG------------------- 137 (208)
Q Consensus 87 ~v~d~~~-~~s~~~~~-~~~~~i~~~--~~~~~piivv~nK~D~~~~~~~~~------~~~------------------- 137 (208)
||+|... +....++. .+|..+... ....+|+++++||.|+..++.... .|+
T Consensus 114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~ 193 (238)
T KOG0090|consen 114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA 193 (238)
T ss_pred EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 9999862 23344444 444444444 246788999999999864322100 000
Q ss_pred ---------HHH--HH--hcCCeEEEeecCCCCChHHHHHHHHHHc
Q 028507 138 ---------EAK--SR--ELNVMFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 138 ---------~~~--~~--~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
..| .+ .....+.+.|++++ ++.++-+||.+.+
T Consensus 194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 000 00 01235788888888 8999999987753
No 265
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.63 E-value=2.7e-14 Score=114.06 Aligned_cols=165 Identities=20% Similarity=0.270 Sum_probs=102.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEE---------------------C-CEEEEEEEEEcCC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL---------------------E-DRTVRLQLWDTAG 67 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~G 67 (208)
++|+|+|.|++|||||+|+|++........+..+++.......+ + .....+.+||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988765444454444433322221 1 1235799999999
Q ss_pred ch----hhhhchhh---hccCCcEEEEEEeCCC-------------hhhHHH---HH----HH--------HHHHHH---
Q 028507 68 QE----RFRSLIPS---YIRDSSVAVVVYDVAS-------------RQSFLN---TS----KW--------IDEVRT--- 109 (208)
Q Consensus 68 ~~----~~~~~~~~---~~~~~d~~i~v~d~~~-------------~~s~~~---~~----~~--------~~~i~~--- 109 (208)
.. ....+-.. .++++|++++|+|+.+ .+...+ +. .| +..+..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 53 22233333 3889999999999961 011111 11 10 000000
Q ss_pred ------------------------------h---------------------cCCCCcEEEEEeCCCCCcccCCCHHHHH
Q 028507 110 ------------------------------E---------------------RGSDVIIVLVGNKTDLVEKRQVSIEEGE 138 (208)
Q Consensus 110 ------------------------------~---------------------~~~~~piivv~nK~D~~~~~~~~~~~~~ 138 (208)
. ....+|+++|+||.|....... ..+..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~-l~~i~ 240 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN-IERLK 240 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH-HHHHH
Confidence 0 0124899999999997532211 12222
Q ss_pred HHHHhcCCeEEEeecCCCCChHH-HHHHHHHHcCCCccccc
Q 028507 139 AKSRELNVMFIETSAKAGFNIKP-LFRKIAAALPGMETLSS 178 (208)
Q Consensus 139 ~~~~~~~~~~~~~sa~~~~~i~~-~~~~l~~~~~~~~~~~~ 178 (208)
. ..+..++.+||..+.++.+ +.+.+.+.+++-+.-.+
T Consensus 241 ~---~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~ 278 (396)
T PRK09602 241 E---EKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEI 278 (396)
T ss_pred h---cCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCc
Confidence 2 2345799999999999999 78899888876654443
No 266
>PRK12739 elongation factor G; Reviewed
Probab=99.63 E-value=3.4e-14 Score=121.55 Aligned_cols=116 Identities=21% Similarity=0.235 Sum_probs=83.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC--cC----------------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
.+-.+|+|+|++++|||||+++|+.. .. ..+..+.++++.....+.+++ ..++++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence 34578999999999999999999742 11 011234455556566666665 67999999999
Q ss_pred hhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
.++...+...+..+|++|+|+|+.+.-.... ...+..+. ..++|+++++||+|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~---~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQAD---KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCCCC
Confidence 9888888888999999999999986422221 12222222 23589999999999864
No 267
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.62 E-value=2.1e-14 Score=122.81 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=85.1
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHhhcCc--C------C----------CCCCCccceeeEEEEEEECCEEEEEEEE
Q 028507 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDK--F------D----------NTYQATIGIDFLSKTMYLEDRTVRLQLW 63 (208)
Q Consensus 2 ~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~--~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 63 (208)
.+....+-.+|+|+|++++|||||+++|+... . . .+....++++.....+.+++ +.+.+|
T Consensus 3 ~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~li 80 (689)
T TIGR00484 3 RTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINII 80 (689)
T ss_pred CcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEE
Confidence 34444455799999999999999999997321 1 0 01123344455555566655 679999
Q ss_pred EcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc
Q 028507 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (208)
Q Consensus 64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~ 129 (208)
||||+.++.......+..+|++|+|+|+++....... ..+..+.. .++|+++++||+|+...
T Consensus 81 DTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 81 DTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred ECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCC
Confidence 9999998887788889999999999999864333322 22222222 35899999999998753
No 268
>PRK00007 elongation factor G; Reviewed
Probab=99.57 E-value=1.1e-13 Score=118.31 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=83.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhc--CcCC----------------CCCCCccceeeEEEEEEECCEEEEEEEEEcCC
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMY--DKFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 67 (208)
..+-.+|+|+|++++|||||+++|+. +... .+..+..+++.....+.+.+ ..++++||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence 34457999999999999999999973 2110 01234455555556666665 6799999999
Q ss_pred chhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
+.+|.......+..+|++|+|+|+...-.... ...+..+. ..++|+++++||+|+....
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~---~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQAD---KYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHH---HcCCCEEEEEECCCCCCCC
Confidence 99887777777899999999999875322222 12222222 2348899999999987543
No 269
>PRK09866 hypothetical protein; Provisional
Probab=99.56 E-value=3.2e-13 Score=111.24 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=72.6
Q ss_pred EEEEEEcCCchh-----hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC
Q 028507 59 RLQLWDTAGQER-----FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133 (208)
Q Consensus 59 ~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~ 133 (208)
.+.|+||||... +.......+..+|++++|+|++...+..+ ....+.+.. .+...|+++|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk-~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILA-VGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHh-cCCCCCEEEEEEcccCCCcccch
Confidence 488999999653 22234456899999999999986433332 223333333 22236999999999986433323
Q ss_pred HHHHHHHHH----hcC---CeEEEeecCCCCChHHHHHHHHH
Q 028507 134 IEEGEAKSR----ELN---VMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 134 ~~~~~~~~~----~~~---~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
.+....+.. ..+ ..++++||+.|.|++.+++.|..
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 444444432 112 27999999999999999999877
No 270
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.3e-13 Score=105.21 Aligned_cols=151 Identities=23% Similarity=0.312 Sum_probs=110.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC------------CCC-------------------CCCccceeeEEEEEEECC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF------------DNT-------------------YQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~------------~~~-------------------~~~~~~~~~~~~~~~~~~ 55 (208)
...++++-+|...-||||||-+|+.... ... .+...+++.-.....+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 3458999999999999999999984321 000 000123333333333444
Q ss_pred EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHH
Q 028507 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~ 135 (208)
.+.+|.|.|||||+.|...+-.-...+|+.|+++|+- ..+....+....|....+ -..+++.+||+|+.+-.+..++
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F~ 160 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVFE 160 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHHHHH
Confidence 4578999999999999998888889999999999994 677777777777777665 2557888899999876554443
Q ss_pred H----HHHHHHhcCC---eEEEeecCCCCChH
Q 028507 136 E----GEAKSRELNV---MFIETSAKAGFNIK 160 (208)
Q Consensus 136 ~----~~~~~~~~~~---~~~~~sa~~~~~i~ 160 (208)
+ -..|+..+++ .++++||..|+|+-
T Consensus 161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 3 3556677775 78999999999864
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.53 E-value=1.9e-13 Score=116.90 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=75.4
Q ss_pred EcCCCCCHHHHHHHhhcCcC--------C----------CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchh
Q 028507 15 LGDQSVGKTSIITRFMYDKF--------D----------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 76 (208)
Q Consensus 15 vG~~~~GKstli~~l~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 76 (208)
+|++++|||||+++|+...- . .+..+..++......+.+.+ +.+++|||||+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 69999999999999963211 0 01112334444445555555 7799999999998888788
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
..+..+|++++|+|+++......... +..+. ..++|+++++||+|+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~-~~~~~---~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETV-WRQAE---KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHH-HHHHH---HcCCCEEEEEECCCCCC
Confidence 88999999999999987544433322 22222 23589999999999863
No 272
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.53 E-value=4.9e-13 Score=102.30 Aligned_cols=126 Identities=12% Similarity=0.160 Sum_probs=76.1
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCC-CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhch-------h
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------P 76 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-------~ 76 (208)
++...++|+++|.+|+||||++|+|++..... +.....+..........++ .++.+|||||..+..... .
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHH
Confidence 34578999999999999999999999876532 2222222222223333444 679999999966432211 1
Q ss_pred hhc--cCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCC--CCcEEEEEeCCCCCcccCCC
Q 028507 77 SYI--RDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQVS 133 (208)
Q Consensus 77 ~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~--~~piivv~nK~D~~~~~~~~ 133 (208)
.++ ...|++++|..++.. .+.. -...+..+...++. -.++++++|+.|...+...+
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred HHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 111 268999999665422 1221 12334444444432 24589999999976544433
No 273
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.53 E-value=5.2e-13 Score=101.03 Aligned_cols=164 Identities=20% Similarity=0.302 Sum_probs=120.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEE--CCEEEEEEEEEcCCchhhhhchhhhccCC---
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL--EDRTVRLQLWDTAGQERFRSLIPSYIRDS--- 82 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~--- 82 (208)
..-+|+|+|..|+|||||+.+|.+.. ..-+..+.++....+.. .+...++.+|-..|..-+..+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a 127 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA 127 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence 35689999999999999999998766 33344445555444433 33456788998888776666666555433
Q ss_pred -cEEEEEEeCCChhh-HHHHHHHHHHHHHh--------------------------------------------------
Q 028507 83 -SVAVVVYDVASRQS-FLNTSKWIDEVRTE-------------------------------------------------- 110 (208)
Q Consensus 83 -d~~i~v~d~~~~~s-~~~~~~~~~~i~~~-------------------------------------------------- 110 (208)
..+|++.|.++|++ ++.++.|..-++.+
T Consensus 128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~ 207 (473)
T KOG3905|consen 128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH 207 (473)
T ss_pred ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence 47888999999965 45578887766553
Q ss_pred -----------cCCCCcEEEEEeCCCCCc----ccC-------CCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHH
Q 028507 111 -----------RGSDVIIVLVGNKTDLVE----KRQ-------VSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 111 -----------~~~~~piivv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
...++|++||++|+|... +.+ .....++.||..+|..++++|+++..||+-+..+|.+
T Consensus 208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 113588999999999842 222 2234567888999999999999999999999999999
Q ss_pred HcCCCc
Q 028507 169 ALPGME 174 (208)
Q Consensus 169 ~~~~~~ 174 (208)
.....+
T Consensus 288 r~yG~~ 293 (473)
T KOG3905|consen 288 RSYGFP 293 (473)
T ss_pred HhcCcc
Confidence 887654
No 274
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.51 E-value=9.4e-14 Score=90.66 Aligned_cols=137 Identities=22% Similarity=0.253 Sum_probs=96.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCc----hhhhhchhhhccCCcEEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----ERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~i 86 (208)
||++||..|+|||||.+.|.+.... +..|..+ .+++ =-.+||||. ..+..-.......+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAv-------e~~d----~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAV-------EFND----KGDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hccccee-------eccC----ccccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7999999999999999999876542 2222221 1211 125799983 333333344467899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~ 165 (208)
+|-+++++++.-. ..+..- ...|+|-|++|.|+.+.. .....++|..+.|. ++|++|+.+..|+++++..
T Consensus 70 ~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccCC-----cccccc--cccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 9999998864221 111111 236688899999998643 35677888889898 8999999999999999998
Q ss_pred HHHH
Q 028507 166 IAAA 169 (208)
Q Consensus 166 l~~~ 169 (208)
|...
T Consensus 141 L~~~ 144 (148)
T COG4917 141 LASL 144 (148)
T ss_pred HHhh
Confidence 8653
No 275
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.50 E-value=1.8e-12 Score=105.15 Aligned_cols=166 Identities=22% Similarity=0.347 Sum_probs=121.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC--CEEEEEEEEEcCCchhhhhchhhhccC---
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRD--- 81 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~--- 81 (208)
..+-.|+|+|..++|||||+.+|.+.. ...++.+.+|....+.-+ ....++++|-..|...+..+....+..
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 456789999999999999999987543 345566777666554433 234578999998877777766655543
Q ss_pred -CcEEEEEEeCCChhhHH-HHHHHHHHHHHh-------------------------------c-----------------
Q 028507 82 -SSVAVVVYDVASRQSFL-NTSKWIDEVRTE-------------------------------R----------------- 111 (208)
Q Consensus 82 -~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~-------------------------------~----------------- 111 (208)
--.+|+|.|.+.|+.+. .+..|+..++.+ .
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 34888999999998755 467776665432 0
Q ss_pred --------------CCCCcEEEEEeCCCCCcc----cC-------CCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 112 --------------GSDVIIVLVGNKTDLVEK----RQ-------VSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 112 --------------~~~~piivv~nK~D~~~~----~~-------~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
..++|++||++|.|.... .. +.....+.+|..+|+.++++|.+...+++-++.+|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 013799999999997531 11 22234677788899999999999999999999999
Q ss_pred HHHcCCCcc
Q 028507 167 AAALPGMET 175 (208)
Q Consensus 167 ~~~~~~~~~ 175 (208)
.+.+...+-
T Consensus 260 ~h~l~~~~f 268 (472)
T PF05783_consen 260 LHRLYGFPF 268 (472)
T ss_pred HHHhccCCC
Confidence 998876544
No 276
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.50 E-value=2.7e-13 Score=100.16 Aligned_cols=161 Identities=12% Similarity=0.112 Sum_probs=94.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCC--ccceeeEEEEEEECCEEEEEEEEEcCCchhhhh-------ch----h
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LI----P 76 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~----~ 76 (208)
++|+|+|..|+||||++|.+++......... ..+.........+++ ..+.|+||||..+... .+ .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999998876444321 122233333446666 5699999999432111 11 1
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCcccCCC-------HHHHHHHHHhcCCe
Q 028507 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQVS-------IEEGEAKSRELNVM 147 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 147 (208)
....+.|++++|+..... +- .-...+..+....++. ..++||+|..|...+..+. ......+....+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~-~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TE-EDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SH-HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-hH-HHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 234679999999999832 21 1223344444444432 3488888988866554311 11233444555667
Q ss_pred EEEeecC------CCCChHHHHHHHHHHcCCCc
Q 028507 148 FIETSAK------AGFNIKPLFRKIAAALPGME 174 (208)
Q Consensus 148 ~~~~sa~------~~~~i~~~~~~l~~~~~~~~ 174 (208)
|+.++.+ ....+.++++.|-.++.+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 7777766 33467888888888876554
No 277
>PTZ00258 GTP-binding protein; Provisional
Probab=99.49 E-value=1e-12 Score=104.12 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=62.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEE---------------EEEEEEEcCCchh--
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER-- 70 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~-- 70 (208)
..++|+|+|.||+|||||+|+|++........|.++++.....+.+.+.. ..+.++|+||...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 46899999999999999999998877766666777766666555554322 2489999999542
Q ss_pred -----hhhchhhhccCCcEEEEEEeCC
Q 028507 71 -----FRSLIPSYIRDSSVAVVVYDVA 92 (208)
Q Consensus 71 -----~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
........++.+|++++|+|+.
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1222334578999999999984
No 278
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.49 E-value=1.5e-12 Score=98.05 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=74.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCC-CCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh--h-c-------h
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--S-L-------I 75 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~-~-------~ 75 (208)
...++|+|+|.+|+|||||+|+|++...... .....+..........++ ..+.+|||||..... . . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 4579999999999999999999998765322 121222222223333444 579999999966441 1 1 1
Q ss_pred hhhcc--CCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCccc
Q 028507 76 PSYIR--DSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVEKR 130 (208)
Q Consensus 76 ~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~--~piivv~nK~D~~~~~ 130 (208)
..++. ..|++++|..++... ... -...++.+....+.. .++++|.||+|...+.
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 12232 578888887665321 111 124444555444322 4689999999986543
No 279
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.48 E-value=1.5e-12 Score=113.96 Aligned_cols=145 Identities=25% Similarity=0.269 Sum_probs=93.7
Q ss_pred CCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEE----------------EEEEEEEcCCchhhhhchhhhccCCc
Q 028507 20 VGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT----------------VRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 20 ~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
++||||+..+.+-.........++...-...+..+... -.+.||||||++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999999777654433333333222233332110 12899999999999888877888999
Q ss_pred EEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC----------------HHHHH----H-
Q 028507 84 VAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS----------------IEEGE----A- 139 (208)
Q Consensus 84 ~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~----------------~~~~~----~- 139 (208)
++++|+|+++ +++++.+. .+.. .++|+++++||+|+....... ..+.. .
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999986 44444332 2222 258999999999986432110 00100 0
Q ss_pred --HHHhc---------------CCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 140 --KSREL---------------NVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 140 --~~~~~---------------~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
...+. ..+++++||++|+|+.+++.+|.....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 01111 248999999999999999988865543
No 280
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.47 E-value=2.8e-13 Score=116.27 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=77.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc---------------CCC-CCCCcccee--eEEEEEEECCEEEEEEEEEcCCch
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK---------------FDN-TYQATIGID--FLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~---------------~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
+..+|+++|+.++|||||+++|+... +.. +.....++. ........++..+.+++|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 34799999999999999999997421 000 001111221 111222345556889999999999
Q ss_pred hhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
+|.......+..+|++|+|+|+.+.-....... +... ...++|+++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~~---~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQA---LKENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHHH---HHcCCCEEEEEEChhccc
Confidence 988878888999999999999975321121111 1111 123478889999999853
No 281
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.46 E-value=6.5e-13 Score=105.59 Aligned_cols=162 Identities=19% Similarity=0.143 Sum_probs=115.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh-----hhc----hh
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSL----IP 76 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~----~~ 76 (208)
+...-.++|+|-|+||||+|++.+........+.++++...+...+.++- ..++++||||.-+. +.. +.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHH
Confidence 56678899999999999999999998887666666666555555555443 67999999994321 110 11
Q ss_pred hhccCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH---HHhcCCeEEEe
Q 028507 77 SYIRDSSVAVVVYDVAS--RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK---SRELNVMFIET 151 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~ 151 (208)
....--.+++++.|++. ..++.....++..|..... +.|+|+|+||+|+.....+..+....+ ...-+++++++
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t 321 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT 321 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence 11223457888889884 3577788888888877774 589999999999988877765543222 23334799999
Q ss_pred ecCCCCChHHHHHHHHHHc
Q 028507 152 SAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 152 sa~~~~~i~~~~~~l~~~~ 170 (208)
|+.+.+|+.++.....+.+
T Consensus 322 S~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred cccchhceeeHHHHHHHHH
Confidence 9999999988765544433
No 282
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.45 E-value=4.1e-13 Score=101.13 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=79.9
Q ss_pred hhhhhchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCe
Q 028507 69 ERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (208)
+++..+.+.++.++|++++|||+++|. ++..+.+|+..+.. .++|+++|+||+|+.+.+....+....+. ..+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence 677888888999999999999999887 89999999876643 45999999999999765544334444443 57889
Q ss_pred EEEeecCCCCChHHHHHHHHHHc
Q 028507 148 FIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 148 ~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
++++||+++.|++++|+.+....
T Consensus 100 v~~~SAktg~gi~eLf~~l~~~~ 122 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQNRI 122 (245)
T ss_pred EEEEecCCchhHHHHHhhhcCCE
Confidence 99999999999999999887543
No 283
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.45 E-value=2.3e-12 Score=86.95 Aligned_cols=114 Identities=36% Similarity=0.405 Sum_probs=81.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCC-CccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
+||+++|..|+|||+|+.++....+...+. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777754333 3322 222233456788999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
|+.++.++++.+ |...+......++|.++++||.|+.++......+.. .++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999888765 777666555566889999999998544344333332 34567888888874
No 284
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.44 E-value=8e-12 Score=98.06 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=60.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEE---------------EEEEEEEcCCchh----
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER---- 70 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~---- 70 (208)
++|+++|.||+|||||+|+|++........|.++++.....+.+.+.. ..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 799999999999999999999887655555666666555454444321 2589999999542
Q ss_pred ---hhhchhhhccCCcEEEEEEeCC
Q 028507 71 ---FRSLIPSYIRDSSVAVVVYDVA 92 (208)
Q Consensus 71 ---~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1112333478999999999984
No 285
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.6e-12 Score=98.31 Aligned_cols=169 Identities=19% Similarity=0.154 Sum_probs=112.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC---CCCCCCccceee--EEEE----------------EEEC------CEEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDF--LSKT----------------MYLE------DRTVR 59 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~---~~~~~~~~~~~~--~~~~----------------~~~~------~~~~~ 59 (208)
.++++|.++|+...|||||..+|.+-.. .++.....++.. .... .... .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 5689999999999999999999985422 111111111110 0000 0000 12346
Q ss_pred EEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC--CCHHHH
Q 028507 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEG 137 (208)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~--~~~~~~ 137 (208)
+.|+|.|||+-+-.....-..-.|+.++|++++.|..--+..+.+-.+.-. .-..++++-||+|+..... .+.+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi--gik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII--GIKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh--ccceEEEEecccceecHHHHHHHHHHH
Confidence 999999999987776666667889999999999654333333322222211 1255899999999976543 335566
Q ss_pred HHHHHhc---CCeEEEeecCCCCChHHHHHHHHHHcCCCcccc
Q 028507 138 EAKSREL---NVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 177 (208)
Q Consensus 138 ~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 177 (208)
++|.+-. +.+++++||..+.|++.+++.|.+.++.-.+..
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~ 208 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL 208 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence 6665533 569999999999999999999999997554443
No 286
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=5.5e-12 Score=96.33 Aligned_cols=162 Identities=19% Similarity=0.189 Sum_probs=101.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC----cC---CCCCCCccceeeEEEEEEE-------CCEEEEEEEEEcCCchhhhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD----KF---DNTYQATIGIDFLSKTMYL-------EDRTVRLQLWDTAGQERFRS 73 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~G~~~~~~ 73 (208)
.++++.++|+..+|||||.++|..- .| +.+.....+.+.-...+.+ .+....+.++|+|||..+-.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 3599999999999999999998732 22 3333344444433333322 23456799999999988776
Q ss_pred chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC-H--HHHHHHHHh---c---
Q 028507 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-I--EEGEAKSRE---L--- 144 (208)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~-~--~~~~~~~~~---~--- 144 (208)
.+.....-.|..++|+|+.... ......-..+..... ...++|+||+|...+.+.. . .......+. .
T Consensus 86 tiiggaqiiDlm~lviDv~kG~--QtQtAEcLiig~~~c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGK--QTQTAECLIIGELLC--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD 161 (522)
T ss_pred HHHhhhheeeeeeEEEehhccc--ccccchhhhhhhhhc--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence 6666667789999999998421 111111122222222 4467777999986653321 1 111111111 1
Q ss_pred -CCeEEEeecCCC----CChHHHHHHHHHHcCCC
Q 028507 145 -NVMFIETSAKAG----FNIKPLFRKIAAALPGM 173 (208)
Q Consensus 145 -~~~~~~~sa~~~----~~i~~~~~~l~~~~~~~ 173 (208)
+.+++++|+++| +.+.++.+.|...+.+-
T Consensus 162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 162 GNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred CCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 259999999999 78888888887777543
No 287
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.43 E-value=6.3e-12 Score=91.80 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=64.7
Q ss_pred EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE--EEEEeCCCCCcccCCCHH
Q 028507 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII--VLVGNKTDLVEKRQVSIE 135 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi--ivv~nK~D~~~~~~~~~~ 135 (208)
....++++.|..-...... .-+|.+|.|+|+.+.+.... ..... +.. ++++||+|+.+......+
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~q--------i~~ad~~~~~k~d~~~~~~~~~~ 158 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPG--------ITRSDLLVINKIDLAPMVGADLG 158 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhH--------hhhccEEEEEhhhccccccccHH
Confidence 3567788888432222211 12688999999986544221 11112 223 788899999754333344
Q ss_pred HHHHHHHh--cCCeEEEeecCCCCChHHHHHHHHHHc
Q 028507 136 EGEAKSRE--LNVMFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 136 ~~~~~~~~--~~~~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
...+.++. .+.+++++|+++|.|++++|++|.+.+
T Consensus 159 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 159 VMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 44555554 356999999999999999999998765
No 288
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.43 E-value=2.2e-12 Score=111.04 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=75.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCc--CCC--------------CCCCccceeeEEEEEE--ECCEEEEEEEEEcCCchh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDK--FDN--------------TYQATIGIDFLSKTMY--LEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~--~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~G~~~ 70 (208)
-.+|+++|+.++|||||+.+|+... ... +.....++......+. +.+..+.++++||||+.+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 3589999999999999999997421 110 0011122222222222 244457899999999999
Q ss_pred hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~ 127 (208)
|.......+..+|++|+|+|+...-.......| ..... .++|.++++||+|+.
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHH---cCCCeEEEEECchhh
Confidence 988888889999999999999853222222222 22222 236778999999975
No 289
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.42 E-value=1.1e-12 Score=114.33 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=78.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC--C--------------CCCCCccceeeEEEEEEE--------------CCEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF--D--------------NTYQATIGIDFLSKTMYL--------------EDRT 57 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------------~~~~ 57 (208)
+-.+|+|+|+.++|||||+++|+...- . .+.....++......+.+ ....
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 346999999999999999999984321 0 011112222322223332 1235
Q ss_pred EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 028507 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~ 127 (208)
+.++++|||||.+|.......+..+|++|+|+|+.+.-.......| +.....++|+++++||+|..
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~----~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL----RQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH----HHHHHCCCCEEEEEECCccc
Confidence 7899999999999998888889999999999999854222222222 22223458999999999986
No 290
>PRK13768 GTPase; Provisional
Probab=99.41 E-value=2.8e-12 Score=97.08 Aligned_cols=115 Identities=23% Similarity=0.175 Sum_probs=71.2
Q ss_pred EEEEEEcCCchhhh---hchhhh---ccC--CcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCcc
Q 028507 59 RLQLWDTAGQERFR---SLIPSY---IRD--SSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (208)
Q Consensus 59 ~~~i~D~~G~~~~~---~~~~~~---~~~--~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~D~~~~ 129 (208)
.+.+||+||..+.. ..+..+ +.. .+++++|+|+........ ...++..+......++|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 58999999976632 222222 222 899999999964332222 222222222211246999999999998765
Q ss_pred cCCCHH--HHH------------------------HHHHhcC--CeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 130 RQVSIE--EGE------------------------AKSRELN--VMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 130 ~~~~~~--~~~------------------------~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
.+.... ... ......+ .+++++|++++.|+++++++|.+.++.-
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 332110 000 0112223 4889999999999999999999988643
No 291
>PTZ00416 elongation factor 2; Provisional
Probab=99.41 E-value=1.5e-12 Score=113.33 Aligned_cols=116 Identities=19% Similarity=0.257 Sum_probs=77.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc--CC--------------CCCCCccceeeEEEEEEEC--------CEEEEEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK--FD--------------NTYQATIGIDFLSKTMYLE--------DRTVRLQLW 63 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~--~~--------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~ 63 (208)
+-.+|+|+|+.++|||||+++|+... .. .+.....++......+.+. +..+.++++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 34599999999999999999998521 10 0111122222222233332 225679999
Q ss_pred EcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 028507 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~ 127 (208)
||||+.+|.......++.+|++|+|+|+.+.-... ....+..+. ..++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~---~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQAL---QERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHH---HcCCCEEEEEEChhhh
Confidence 99999999888888899999999999998532211 122222222 2358999999999986
No 292
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.39 E-value=5.9e-13 Score=99.65 Aligned_cols=112 Identities=23% Similarity=0.132 Sum_probs=61.3
Q ss_pred EEEEEEcCCchhhhhchhhhc--------cCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc
Q 028507 59 RLQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~ 129 (208)
.+.++||||+.++...+.... ...-++|+++|+....+ ...+..++..+....+.+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 599999999988766554432 34568888999863322 223344444444333346999999999999762
Q ss_pred cC----------------------CCHHHHHHHHHhcCC--eEEEeecCCCCChHHHHHHHHHHc
Q 028507 130 RQ----------------------VSIEEGEAKSRELNV--MFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 130 ~~----------------------~~~~~~~~~~~~~~~--~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
.. ....+.......++. .++.+|+.+++++.+++..+.+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 20 000111111122232 799999999999999999887654
No 293
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.39 E-value=1.2e-11 Score=100.13 Aligned_cols=162 Identities=19% Similarity=0.212 Sum_probs=120.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+-+++.++|+.++|||.|++.++++.+......+....+....+...+....+.+-|.+-. ...-+.... ..+|++++
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL 501 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence 3578889999999999999999998887766666666666666666666666777777643 222223333 78999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~l 166 (208)
+||.++|.+|..+...++.-... ...|+++|++|.|+.+..+.......+++.++++ +-+.+|.+...+ .++|..|
T Consensus 502 ~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL 578 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKL 578 (625)
T ss_pred ecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHH
Confidence 99999999999988777665433 5699999999999977654444444888999998 445666664333 8999999
Q ss_pred HHHcCCCc
Q 028507 167 AAALPGME 174 (208)
Q Consensus 167 ~~~~~~~~ 174 (208)
..+...-+
T Consensus 579 ~~~A~~Ph 586 (625)
T KOG1707|consen 579 ATMAQYPH 586 (625)
T ss_pred HHhhhCCC
Confidence 98876444
No 294
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.36 E-value=1.2e-11 Score=94.02 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=59.0
Q ss_pred EEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEE---------------EEEEEEEcCCchh------
Q 028507 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER------ 70 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~------ 70 (208)
|+|+|.|++|||||+|+|++........+.++++.....+.+.+.. ..+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999887765556666666666555554421 2599999999542
Q ss_pred -hhhchhhhccCCcEEEEEEeCC
Q 028507 71 -FRSLIPSYIRDSSVAVVVYDVA 92 (208)
Q Consensus 71 -~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1112333468899999999874
No 295
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.1e-11 Score=100.29 Aligned_cols=153 Identities=25% Similarity=0.319 Sum_probs=104.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc--C---------------------------CCCCCCccceeeEEEEEEECCEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK--F---------------------------DNTYQATIGIDFLSKTMYLEDRTV 58 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 58 (208)
..+.++++|+..+|||||+.+|+..- . ....++..+++......+++....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 57999999999999999999987321 0 111223344555555666666677
Q ss_pred EEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChh---hHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC
Q 028507 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~--~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~ 133 (208)
.++|+|+|||..|..........+|+.|+|+|++..+ +|+. ..+.+..+.+..+ -..++|++||+|+.+=.+-.
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccHHH
Confidence 8999999999999888888889999999999998421 2221 2223333334443 24478888999998755544
Q ss_pred HHHHHH----HH-HhcC-----CeEEEeecCCCCChHH
Q 028507 134 IEEGEA----KS-RELN-----VMFIETSAKAGFNIKP 161 (208)
Q Consensus 134 ~~~~~~----~~-~~~~-----~~~~~~sa~~~~~i~~ 161 (208)
++++.. |. ...| +.++++|+.+|+|+-.
T Consensus 335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 444433 33 2223 4799999999998654
No 296
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.35 E-value=1.3e-11 Score=97.02 Aligned_cols=159 Identities=16% Similarity=0.135 Sum_probs=77.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCcc---ceeeEEEEEEECCEEEEEEEEEcCCchhhhhch-----hhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI---GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-----PSYI 79 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~-----~~~~ 79 (208)
..++|+|+|.+|+|||||||+|.+-.-.......+ ..+.......... .-.+.+||.||.....-.. ..-+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 46899999999999999999997643221111111 1111111111111 1149999999954322111 1225
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCC-------cccCCCHH----HHHHHHHh----
Q 028507 80 RDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV-------EKRQVSIE----EGEAKSRE---- 143 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piivv~nK~D~~-------~~~~~~~~----~~~~~~~~---- 143 (208)
...|.+|++.+. .|..-.-++ ..+.. .++|.++|-+|+|.. .++....+ +++..+.+
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 678988887763 233322222 22332 358999999999961 11222222 22222222
Q ss_pred cCC---eEEEeecCCCC--ChHHHHHHHHHHcCCCc
Q 028507 144 LNV---MFIETSAKAGF--NIKPLFRKIAAALPGME 174 (208)
Q Consensus 144 ~~~---~~~~~sa~~~~--~i~~~~~~l~~~~~~~~ 174 (208)
.|. ++|-+|+.+-. ++..+.+.|...++...
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 233 78999988754 46677888888776553
No 297
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.34 E-value=3.2e-11 Score=89.88 Aligned_cols=139 Identities=12% Similarity=0.128 Sum_probs=80.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+...|+++|++|+|||||++.+....-........+ .. .+ .......+.++|+||.. ..+ ......+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEE
Confidence 4457899999999999999999986422111111111 01 11 11133568999999854 222 23468899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCcccCCC---HHHHHH-HHHh--cCCeEEEeecCCCC
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDLVEKRQVS---IEEGEA-KSRE--LNVMFIETSAKAGF 157 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~sa~~~~ 157 (208)
+|+|++....... ..++..+.. .+.|. ++|+||+|+.+..... ..+++. +..+ .+.+++.+||++.-
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 9999975322211 222333322 23674 5599999986432211 111111 2211 23589999998864
No 298
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.34 E-value=2.7e-11 Score=89.25 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=84.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCC--------CCCC---Ccccee-eEEEEEEECC--------------------E
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFD--------NTYQ---ATIGID-FLSKTMYLED--------------------R 56 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~--------~~~~---~~~~~~-~~~~~~~~~~--------------------~ 56 (208)
-..|+|+|+.|+|||||+++++..... .... ...... .....+...+ .
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~~ 101 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPLD 101 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhccC
Confidence 468899999999999999998743110 0000 000000 0000000000 0
Q ss_pred EEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHH
Q 028507 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE 136 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~ 136 (208)
...+.|+++.|.-... ..+....+..+.|+|+.+.+. .+... ... ...|.++++||+|+.+.......+
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~--~~~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~~ 170 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDD--KPLKY-PGM-----FKEADLIVINKADLAEAVGFDVEK 170 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccc--hhhhh-HhH-----HhhCCEEEEEHHHccccchhhHHH
Confidence 2356777777721100 111123455667888874432 11111 111 125678999999997543333344
Q ss_pred HHHHHHhcC--CeEEEeecCCCCChHHHHHHHHHHc
Q 028507 137 GEAKSRELN--VMFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 137 ~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
........+ .+++++|++++.|++++++++.+..
T Consensus 171 ~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 171 MKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 444444443 7999999999999999999998753
No 299
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.32 E-value=8e-11 Score=92.05 Aligned_cols=115 Identities=20% Similarity=0.261 Sum_probs=79.9
Q ss_pred EEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCC
Q 028507 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD 125 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D 125 (208)
.+.+.+||++|+...+..|..++.+++++|+|+|+++. +.+......+..+-... -.++|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46799999999999999999999999999999999874 23333333333333221 15699999999999
Q ss_pred CCccc----------------CCCHHHHHHHHHh----------cCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 126 LVEKR----------------QVSIEEGEAKSRE----------LNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 126 ~~~~~----------------~~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
+.++. .-...++..+... ..+..+.++|.+..++..+|+.+.+.+.
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~ 311 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL 311 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence 75321 1223343333322 1245577888889999999988877664
No 300
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=6.9e-12 Score=90.67 Aligned_cols=147 Identities=24% Similarity=0.326 Sum_probs=95.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh-----hhchhhhccCC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYIRDS 82 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~~ 82 (208)
.-||+++|.+|+|||++-..+..+... ....++.++++....+.+-| ...+++||++|++.+ .......+.+.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 468999999999999987776655432 23344555666665555544 367999999998853 22445568899
Q ss_pred cEEEEEEeCCChhhHHHHHHHHH---HHHHhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHH----HHhcCCeEEEeec
Q 028507 83 SVAVVVYDVASRQSFLNTSKWID---EVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAK----SRELNVMFIETSA 153 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~---~i~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~----~~~~~~~~~~~sa 153 (208)
+++++|||++..+-..++..+-. .+.++ .+...+++..+|+|+..... ....+.... .....+.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999997655444544444 33333 36677899999999976432 222222222 2223456777777
Q ss_pred CCCC
Q 028507 154 KAGF 157 (208)
Q Consensus 154 ~~~~ 157 (208)
++..
T Consensus 162 wDet 165 (295)
T KOG3886|consen 162 WDET 165 (295)
T ss_pred hhHH
Confidence 6643
No 301
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.30 E-value=4e-11 Score=91.90 Aligned_cols=142 Identities=13% Similarity=0.204 Sum_probs=77.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCC----------CCCccceeeEEEEEEECCEEEEEEEEEcCCchh--------
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------- 70 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------- 70 (208)
+++|+|+|.+|+|||||+|.|++...... ...+..+......+.-++..+.++|+||||...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 58999999999999999999997654222 112333444445556677888999999999321
Q ss_pred ----------hhhchh---------hhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 71 ----------FRSLIP---------SYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 71 ----------~~~~~~---------~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
|..... ..=..+|++++.++.+.. ++..+ ...+..+. ..+++|.|+.|.|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 111000 011367899999998753 11111 12233332 348899999999986544
Q ss_pred CC--CHHHHHHHHHhcCCeEEEeecCC
Q 028507 131 QV--SIEEGEAKSRELNVMFIETSAKA 155 (208)
Q Consensus 131 ~~--~~~~~~~~~~~~~~~~~~~sa~~ 155 (208)
++ ....+.......++.+|......
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~~~~ 185 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFPEDD 185 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S-------
T ss_pred HHHHHHHHHHHHHHHcCceeecccccc
Confidence 32 23444555666788766644433
No 302
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.5e-11 Score=93.65 Aligned_cols=155 Identities=20% Similarity=0.152 Sum_probs=109.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC---CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
-|+..|+-..|||||+..+.+... ++.....++++......+..+ ..+.|+|.||++++-...-..+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 467789999999999999987544 445555666666665555555 479999999999998888888899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhc---CCeEEEeecCCCCChHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL---NVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~ 164 (208)
|+++++. ..........+....+ ....++|+||+|..++..+ .+...+....+ ..+++.+|+++|+||+++.+
T Consensus 80 vV~~deG--l~~qtgEhL~iLdllg-i~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEG--LMAQTGEHLLILDLLG-IKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccC--cchhhHHHHHHHHhcC-CCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 9999732 2222222223333333 1335888899998765422 22222222222 35889999999999999999
Q ss_pred HHHHHcC
Q 028507 165 KIAAALP 171 (208)
Q Consensus 165 ~l~~~~~ 171 (208)
.|.+...
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9999885
No 303
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=4.7e-11 Score=89.44 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=105.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhc---Cc-------C------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMY---DK-------F------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~---~~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.+.++|..+|+.+.|||||..++.. .+ | +.+... +++.....+.+......+..+|+|||.+
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~r--GITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKAR--GITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhc--CceeccceeEEecCCceEEeccCCChHH
Confidence 4679999999999999999887752 11 1 222233 3444444444544446789999999999
Q ss_pred hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCcccC---CCHHHHHHHHHhcCC
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELNV 146 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~~ 146 (208)
|-........+.|+.|+|++++|..-... .+ .-.+.+.. .+| ++++.||+|+.+..+ +-..+...+..++++
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqT-rE-HiLlarqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQT-RE-HILLARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcc-hh-hhhhhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 98888777889999999999986321111 11 11122222 365 667779999987543 224566777777765
Q ss_pred -----eEEEeecCC---CC-----ChHHHHHHHHHHcCCC
Q 028507 147 -----MFIETSAKA---GF-----NIKPLFRKIAAALPGM 173 (208)
Q Consensus 147 -----~~~~~sa~~---~~-----~i~~~~~~l~~~~~~~ 173 (208)
+++.-|+.- +. .|.++++.+...++.-
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 677777553 11 2567777777766543
No 304
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.29 E-value=1.8e-10 Score=90.77 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=79.5
Q ss_pred EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCC
Q 028507 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ----------SFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDL 126 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~~-~~~~~piivv~nK~D~ 126 (208)
+.+.+||.+|+...+..|..++.+++++|||+|+++.+ .+......+..+-.. .-.++|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 56899999999999999999999999999999999642 344433344444332 1256999999999998
Q ss_pred Cccc--------------C-CCHHHHHHHHHh-----------cCCeEEEeecCCCCChHHHHHHHHHHcCC
Q 028507 127 VEKR--------------Q-VSIEEGEAKSRE-----------LNVMFIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 127 ~~~~--------------~-~~~~~~~~~~~~-----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
..+. . .....+..+... ..+..+.++|.+..++..+|+.+...+.+
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~ 335 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ 335 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence 5421 0 122333332211 12456778888899999999888776643
No 305
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.29 E-value=7.9e-11 Score=83.84 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=43.1
Q ss_pred EEEEEEcCCchh----hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 028507 59 RLQLWDTAGQER----FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124 (208)
Q Consensus 59 ~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 124 (208)
.+.|+|+||... ...++..++..+|++|+|.+++...+-.....+.+...... ..+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~---~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK---SRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC---SSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC---CeEEEEEcCC
Confidence 389999999653 33567778899999999999997655444444444443332 3388888884
No 306
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.27 E-value=6.4e-11 Score=92.35 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=66.8
Q ss_pred EEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC--CH
Q 028507 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SI 134 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~--~~ 134 (208)
.+.+.|+||+|...-... ....+|.+++|.+....+.+..+. ..+... .-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~-----aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIMEL-----ADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhhh-----hheEEeehhcccchhHHHHHH
Confidence 367999999996633222 466799999997744333333322 212211 12788899998654321 11
Q ss_pred HHHHHHHHh-------cCCeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 135 EEGEAKSRE-------LNVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 135 ~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
.+....... +..+++.+|++++.|++++++.|.+.+..+
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 222222222 225899999999999999999999977533
No 307
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.26 E-value=1.1e-11 Score=91.94 Aligned_cols=114 Identities=21% Similarity=0.262 Sum_probs=66.0
Q ss_pred EEEEEEEcCCchh-h-----hhchhhhcc--CCcEEEEEEeCC---ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 028507 58 VRLQLWDTAGQER-F-----RSLIPSYIR--DSSVAVVVYDVA---SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (208)
Q Consensus 58 ~~~~i~D~~G~~~-~-----~~~~~~~~~--~~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~ 126 (208)
+...++||||+-+ | ...+-..+. ..-++++|+|.. +|.+|.. ..+-.-.-.+.-..|.++++||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMS--NMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMS--NMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHH--HHHHHHHHHHhccCCeEEEEecccc
Confidence 5689999999654 1 111211222 334667777764 3433332 1111122233345999999999998
Q ss_pred CcccC-----CCHHHHHHHHHh---------------------cCCeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 127 VEKRQ-----VSIEEGEAKSRE---------------------LNVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 127 ~~~~~-----~~~~~~~~~~~~---------------------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
....= -.++.-++...+ .++..+-+|+.+|.|.+++|..+.+.+.++
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 75310 001111111110 145789999999999999999998877554
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.7e-11 Score=102.48 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=83.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC--cCC----------------CCCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
.+-.+|.|+|+.++|||||..+|+.. ... .+..+..+++-....+.+.+ .+.++++|||||
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence 45679999999999999999998732 111 11123344445555555554 478999999999
Q ss_pred hhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
-+|..-....++-+|++|+|+|+.+.-....-.-|.+ ....++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq----a~~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ----ADKYGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH----HhhcCCCeEEEEECccccc
Confidence 9999999999999999999999984322222222322 3334599999999999864
No 309
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=7e-10 Score=86.24 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=62.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECC----------------EEEEEEEEEcCCchh--
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED----------------RTVRLQLWDTAGQER-- 70 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~G~~~-- 70 (208)
.+++.|||.||||||||+|+++.........|..+++.....+.+.. ....+.|+|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 37899999999999999999998776556667766666555443321 234699999999442
Q ss_pred -----hhhchhhhccCCcEEEEEEeCC
Q 028507 71 -----FRSLIPSYIRDSSVAVVVYDVA 92 (208)
Q Consensus 71 -----~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
+.......++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 3334455688999999999987
No 310
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.23 E-value=3.6e-10 Score=93.90 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=74.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCC--CCccceeeEEEEEEECCEEEEEEEEEcCCchhhh-------hc---h
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SL---I 75 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~---~ 75 (208)
..++|+|+|.+|+||||++|+|++....... .+.++ .........++ ..+.|+||||..... .. .
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT-r~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT-SVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce-EEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 3579999999999999999999987643222 12222 22222223344 569999999966421 11 1
Q ss_pred hhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC--cEEEEEeCCCCCcc
Q 028507 76 PSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV--IIVLVGNKTDLVEK 129 (208)
Q Consensus 76 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--piivv~nK~D~~~~ 129 (208)
..++. ..|++|+|..++.......-..++..+...++..+ .+|||+|+.|..++
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 11222 58999999887632221122345666666665433 37888999998763
No 311
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=6.1e-11 Score=98.35 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=102.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC------------CE----EEEEEEEEcCCchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE------------DR----TVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~i~D~~G~~~ 70 (208)
.+..=+||+|+..+|||-|+..+.+-.+......+++-......+... ++ .=.+.++|||||+.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 455679999999999999999998765543333222211111111110 00 11389999999999
Q ss_pred hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC-------------CC----
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-------------VS---- 133 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~-------------~~---- 133 (208)
|..+..+....||.+|+|+|+... ++. ..+..|......+.|.||..||+|..=... -.
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhG--lep--qtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~ 628 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHG--LEP--QTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ 628 (1064)
T ss_pred hhhhhhccccccceEEEEeehhcc--CCc--chhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence 999999999999999999999732 222 112233333445699999999999742100 00
Q ss_pred ------HHH-HHHHHHh-c-------------CCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 134 ------IEE-GEAKSRE-L-------------NVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 134 ------~~~-~~~~~~~-~-------------~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
... +..|+.+ + -+.++++||.+|+||-+|+-+|++...
T Consensus 629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 000 0111110 0 135799999999999999999887654
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.20 E-value=4.9e-10 Score=83.68 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=42.4
Q ss_pred EEEEEEEcCCchh-------------hhhchhhhcc-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 028507 58 VRLQLWDTAGQER-------------FRSLIPSYIR-DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123 (208)
Q Consensus 58 ~~~~i~D~~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 123 (208)
..+.++|+||... ...+...++. ..+++++|+|+...-.-.........+.. ...++++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence 3599999999642 1224455666 45699999988632111121222233322 35899999999
Q ss_pred CCCCcc
Q 028507 124 TDLVEK 129 (208)
Q Consensus 124 ~D~~~~ 129 (208)
.|..++
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998754
No 313
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.19 E-value=8.5e-11 Score=83.33 Aligned_cols=80 Identities=28% Similarity=0.229 Sum_probs=56.3
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC--CeEEEeecCCCCChH
Q 028507 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIK 160 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~ 160 (208)
+.-|+|+|++..+- .-..-+.-+.. -=++|+||.|+++.-..+.+...+.+++.+ .+++++|.++|+|++
T Consensus 119 ~~~v~VidvteGe~--~P~K~gP~i~~------aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~ 190 (202)
T COG0378 119 HLRVVVIDVTEGED--IPRKGGPGIFK------ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLD 190 (202)
T ss_pred ceEEEEEECCCCCC--CcccCCCceeE------eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHH
Confidence 37888888885421 00000111111 127888999999888887777777777654 699999999999999
Q ss_pred HHHHHHHHHc
Q 028507 161 PLFRKIAAAL 170 (208)
Q Consensus 161 ~~~~~l~~~~ 170 (208)
+++.|+....
T Consensus 191 ~~~~~i~~~~ 200 (202)
T COG0378 191 EWLRFIEPQA 200 (202)
T ss_pred HHHHHHHhhc
Confidence 9999987654
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.18 E-value=2.7e-10 Score=88.53 Aligned_cols=104 Identities=19% Similarity=0.098 Sum_probs=64.8
Q ss_pred EEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHH
Q 028507 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE 136 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~ 136 (208)
.+.+.|+||+|..... ...+..+|.++++.... +-+.+......+. .+|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHH
Confidence 3678999999854222 22456778888885433 3344444443332 36779999999986543211100
Q ss_pred H------HHHHH---hcCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 137 G------EAKSR---ELNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 137 ~------~~~~~---~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
. ..... .+..+++.+|++++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 11111 12236899999999999999999988754
No 315
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.17 E-value=2.3e-09 Score=84.75 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=92.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC----cCC-------------CCCCC---ccceeeE----EEEE-EECCEEEEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD----KFD-------------NTYQA---TIGIDFL----SKTM-YLEDRTVRLQLW 63 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~----~~~-------------~~~~~---~~~~~~~----~~~~-~~~~~~~~~~i~ 63 (208)
.+-|.|+|+.++|||||+++|.+. ... ++..- +++...+ ..++ ..++...++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 578999999999999999999977 221 11111 1111111 1222 223445689999
Q ss_pred EcCCchhhhh--------------c---------------hhhhcc-CCcEEEEEE-eCC----Chhh-HHHHHHHHHHH
Q 028507 64 DTAGQERFRS--------------L---------------IPSYIR-DSSVAVVVY-DVA----SRQS-FLNTSKWIDEV 107 (208)
Q Consensus 64 D~~G~~~~~~--------------~---------------~~~~~~-~~d~~i~v~-d~~----~~~s-~~~~~~~~~~i 107 (208)
||+|...-.. - .+..+. .+++.|+|. |.+ .++. .+.-.+++.++
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9999432100 0 122344 788888888 774 1112 22334555555
Q ss_pred HHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCC--CCChHHHHHHHHHHc
Q 028507 108 RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA--GFNIKPLFRKIAAAL 170 (208)
Q Consensus 108 ~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~--~~~i~~~~~~l~~~~ 170 (208)
.. .++|.+++.|+.|-..+. .......+...++.+++.+|+.. -+++..+++.++..+
T Consensus 177 k~---~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 177 KE---LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEF 236 (492)
T ss_pred Hh---cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence 54 459999999999943222 33334455567788877777654 345555555555444
No 316
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=3.3e-10 Score=89.16 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=90.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhh--cCcC--------------------CCCCCCccceeeEEEEEEECCEEEEEEEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFM--YDKF--------------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 64 (208)
.+.-..+|+-+|.+|||||-..|+ ++-. ..+.+..++++.....+.+++ ..+++.|
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLD 87 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLD 87 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccC
Confidence 356678999999999999999876 1111 012234556666677777776 6799999
Q ss_pred cCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhc
Q 028507 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL 144 (208)
Q Consensus 65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~ 144 (208)
||||++|..-.-+.+..+|..|.|+|+. ..++.... +.+.-+...++||+-++||.|..... ..+...+....+
T Consensus 88 TPGHeDFSEDTYRtLtAvDsAvMVIDaA--KGiE~qT~--KLfeVcrlR~iPI~TFiNKlDR~~rd--P~ELLdEiE~~L 161 (528)
T COG4108 88 TPGHEDFSEDTYRTLTAVDSAVMVIDAA--KGIEPQTL--KLFEVCRLRDIPIFTFINKLDREGRD--PLELLDEIEEEL 161 (528)
T ss_pred CCCccccchhHHHHHHhhheeeEEEecc--cCccHHHH--HHHHHHhhcCCceEEEeeccccccCC--hHHHHHHHHHHh
Confidence 9999999887777788999999999998 33443222 22222233679999999999974322 233334444455
Q ss_pred CC
Q 028507 145 NV 146 (208)
Q Consensus 145 ~~ 146 (208)
++
T Consensus 162 ~i 163 (528)
T COG4108 162 GI 163 (528)
T ss_pred Cc
Confidence 54
No 317
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.15 E-value=1.3e-10 Score=93.64 Aligned_cols=159 Identities=21% Similarity=0.388 Sum_probs=121.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
+.+++|+.|||..++|||+|+.+++.+.|.....+..+ .+.+++.+++..+.+.+.|.+|.. ...|...+|++
T Consensus 27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav 99 (749)
T KOG0705|consen 27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV 99 (749)
T ss_pred ccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence 46899999999999999999999999998766555543 456666677777889999998843 24456788999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCc--ccCCCHHHHHHHH-HhcCCeEEEeecCCCCChHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE--KRQVSIEEGEAKS-RELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~--~~~~~~~~~~~~~-~~~~~~~~~~sa~~~~~i~~ 161 (208)
||||...+.++|..+..+...+..+.. ..+|.++++++.-+.. .+....++....+ +...+.+|++++.+|.++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 999999999999999888888765543 5678888877654322 2334444444444 44567999999999999999
Q ss_pred HHHHHHHHcC
Q 028507 162 LFRKIAAALP 171 (208)
Q Consensus 162 ~~~~l~~~~~ 171 (208)
+|+.+...+.
T Consensus 180 vf~~~~~k~i 189 (749)
T KOG0705|consen 180 VFQEVAQKIV 189 (749)
T ss_pred HHHHHHHHHH
Confidence 9998877664
No 318
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.13 E-value=3.6e-09 Score=77.84 Aligned_cols=154 Identities=20% Similarity=0.268 Sum_probs=103.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh-------hhchhhhccC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRD 81 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 81 (208)
.-+++++|.|.+|||||+..++.-........+++.+...-.+.+++ ..+++.|.||.-+- ....-...+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 57999999999999999999987665444455556677777778887 45999999995532 2233345678
Q ss_pred CcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCC----------------------------------------------
Q 028507 82 SSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSD---------------------------------------------- 114 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~---------------------------------------------- 114 (208)
+|.++.|.|++..+.-.. +...++.+.-.....
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 999999999996554332 444444442221111
Q ss_pred -------------------CcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 115 -------------------VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 115 -------------------~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
++.+.|-||+| +++.++..+.+.+-+-.+ +|+....|++.+++.|-+.+.
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~PnsvV--iSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPNSVV--ISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCCcEE--EEeccccCHHHHHHHHHHHhc
Confidence 33444555555 355666666666655444 466778889999888877653
No 319
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.12 E-value=1.2e-10 Score=88.40 Aligned_cols=151 Identities=16% Similarity=0.153 Sum_probs=99.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh---------hhhchhhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI 79 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 79 (208)
-.-|.+||-.|+|||||+++|+.........-+.+.+..........+. .+.+.||.|.-. |..... .+
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLe-eV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLE-EV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHH-HH
Confidence 3568999999999999999999655444444444455544444444432 588899999332 333222 36
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc----EEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCC
Q 028507 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI----IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p----iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 155 (208)
..+|.++.|.|++.|+.-.+...-+..+....-+..| ++=|-||+|..+.... .+ .++ .+.+|+.+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--~E------~n~--~v~isalt 325 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--EE------KNL--DVGISALT 325 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--cc------cCC--cccccccc
Confidence 7899999999999997655555545545443322233 4556788886443221 11 112 57789999
Q ss_pred CCChHHHHHHHHHHcC
Q 028507 156 GFNIKPLFRKIAAALP 171 (208)
Q Consensus 156 ~~~i~~~~~~l~~~~~ 171 (208)
|+|+.++.+.+-..+.
T Consensus 326 gdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 326 GDGLEELLKAEETKVA 341 (410)
T ss_pred CccHHHHHHHHHHHhh
Confidence 9999999988877664
No 320
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.09 E-value=2.8e-09 Score=82.51 Aligned_cols=137 Identities=14% Similarity=0.216 Sum_probs=87.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCC----------CCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh------
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------ 72 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------ 72 (208)
.++|+++|++|.|||||+|.|++...... ..++..+......+.-++-.+.++++||||.-++-
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 58999999999999999999997643221 23445555666666667878899999999932210
Q ss_pred --------hchhhh--------------ccCCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCcc
Q 028507 73 --------SLIPSY--------------IRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (208)
Q Consensus 73 --------~~~~~~--------------~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~ 129 (208)
.....+ =.++|++++.+..+.. ++..+ .+.+..+.. .+-+|.|+-|.|....
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccCCH
Confidence 001111 1257788888876642 22222 223333433 3778999999998754
Q ss_pred cCC--CHHHHHHHHHhcCCeEEE
Q 028507 130 RQV--SIEEGEAKSRELNVMFIE 150 (208)
Q Consensus 130 ~~~--~~~~~~~~~~~~~~~~~~ 150 (208)
.++ ....+.+....+++++|.
T Consensus 178 ~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 178 DELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCceeC
Confidence 432 234455566677887774
No 321
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=9.1e-10 Score=90.66 Aligned_cols=116 Identities=21% Similarity=0.228 Sum_probs=79.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCC-----------------CCccceeeEEEEE---EECCEEEEEEEEEcCC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-----------------QATIGIDFLSKTM---YLEDRTVRLQLWDTAG 67 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~~~i~D~~G 67 (208)
.-.+++++|+-++|||+|+..|..+..+.-. .+..++......+ ..+++.+-++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 4578999999999999999998754332110 0111111111121 2356778899999999
Q ss_pred chhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 028507 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~ 127 (208)
|-.|.......++.+|++++|+|+.+.=.+.. .+.+. .......|+++|+||+|+.
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ik---haiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIK---HAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHH---HHHhccCcEEEEEehhHHH
Confidence 99999988888999999999999985433322 22222 2223569999999999974
No 322
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=2.3e-09 Score=78.30 Aligned_cols=145 Identities=13% Similarity=0.188 Sum_probs=85.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCC---------CCCCccceeeEEEEEEECCEEEEEEEEEcCCchh---------
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN---------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------- 70 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------- 70 (208)
+++|+|||.+|.|||||+|+|...+... ....|+.+......+.-++...+++++||||..+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 5899999999999999999998544321 1112333333344455567778999999999322
Q ss_pred ---------hhh--------chhhhccC--CcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCc--
Q 028507 71 ---------FRS--------LIPSYIRD--SSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE-- 128 (208)
Q Consensus 71 ---------~~~--------~~~~~~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~-- 128 (208)
|.. .....+.. +|..++.+..+.. ++..+ .++++.+... +.++-|+-|.|-..
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~v----vNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTEV----VNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhhh----heeeeeEeecccccHH
Confidence 111 11122333 4555555555532 22222 2233333332 56788889999643
Q ss_pred ccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
++....++++.....+++.+++--+.+-..
T Consensus 201 Er~~FkqrI~~el~~~~i~vYPq~~fded~ 230 (336)
T KOG1547|consen 201 ERSAFKQRIRKELEKHGIDVYPQDSFDEDL 230 (336)
T ss_pred HHHHHHHHHHHHHHhcCcccccccccccch
Confidence 333344556666677888877776655443
No 323
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.03 E-value=8.9e-10 Score=83.98 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=39.8
Q ss_pred CcEEEEEeCCCCCcccCCCHHHHHHHHHhc--CCeEEEeecCCCCChHHHHHHHHHH
Q 028507 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 115 ~piivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
..-++|+||+|+.+......++.....+.. +.+++.+|+++|+|++++.+||...
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 445888899999753322333444444433 4699999999999999999999774
No 324
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=3e-09 Score=81.37 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=107.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhc----------CcCC----CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMY----------DKFD----NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
.++++|.-+|+...|||||-.+++. .+|. ...+...+++.....+.+......+-=.|+|||.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4689999999999999999887651 1111 1122334555556666665555667889999999998
Q ss_pred hchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCccc---CCCHHHHHHHHHhcCC--
Q 028507 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR---QVSIEEGEAKSRELNV-- 146 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~---~~~~~~~~~~~~~~~~-- 146 (208)
.....-..+.|+.|+|+.++|.... +..+ ...+.+-.+ ++ +++.+||.|+.++. ++-..++++...++|+
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MP-QTrE-HlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMP-QTRE-HLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCc-chHH-HHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 8887778899999999999974322 2222 222333222 44 67778999998543 2335667777778764
Q ss_pred ---eEEEeecC---CCCC-------hHHHHHHHHHHcCC
Q 028507 147 ---MFIETSAK---AGFN-------IKPLFRKIAAALPG 172 (208)
Q Consensus 147 ---~~~~~sa~---~~~~-------i~~~~~~l~~~~~~ 172 (208)
|++.-||. +|.+ |.++++.+...++.
T Consensus 208 d~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 208 DNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred CCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 78887765 4432 55666666665553
No 325
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.1e-08 Score=79.72 Aligned_cols=143 Identities=15% Similarity=0.236 Sum_probs=88.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCC---------CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh--------
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN---------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------- 71 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------- 71 (208)
.+.++++|.+|.|||||+|.|+...+.. ....+..+......+.-++-.++++++||||..+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 4899999999999999999988654322 12224444555555666777889999999993221
Q ss_pred ----------h-------hchhhhcc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 72 ----------R-------SLIPSYIR--DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 72 ----------~-------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
. .+.+..+. .+|+.++.+..+.. ++..+ ..++..+. ..+.+|.|+-|.|.....+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~----~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS----KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh----ccccccceeeccccCCHHH
Confidence 1 11111233 67788888876642 22222 12223332 3478899999999866543
Q ss_pred C--CHHHHHHHHHhcCCeEEEeecCCC
Q 028507 132 V--SIEEGEAKSRELNVMFIETSAKAG 156 (208)
Q Consensus 132 ~--~~~~~~~~~~~~~~~~~~~sa~~~ 156 (208)
+ ....+...+...++++|....-..
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 2 234455556677787776664443
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.99 E-value=4e-09 Score=76.70 Aligned_cols=94 Identities=26% Similarity=0.314 Sum_probs=66.1
Q ss_pred hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HhcC
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELN 145 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 145 (208)
+..++..++.++|++++|+|++++.. .|...+... ..+.|+++|+||+|+..... .......+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 56778888999999999999987542 122222212 24589999999999865433 233333333 2233
Q ss_pred C---eEEEeecCCCCChHHHHHHHHHHcC
Q 028507 146 V---MFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 146 ~---~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
. .++.+||+++.|++++++.|.+.++
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 6899999999999999999998764
No 327
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.99 E-value=6.4e-09 Score=80.99 Aligned_cols=123 Identities=16% Similarity=0.248 Sum_probs=82.8
Q ss_pred EEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHH-------HHHHHHHHHHhcC----CCC
Q 028507 47 LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-------TSKWIDEVRTERG----SDV 115 (208)
Q Consensus 47 ~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-------~~~~~~~i~~~~~----~~~ 115 (208)
....+.+.+ ..+.++|.+|+...+.-|..++.+++++|||+++++.+.... +.+-+..+...+. .+.
T Consensus 186 ~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~t 263 (354)
T KOG0082|consen 186 VEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANT 263 (354)
T ss_pred eEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccC
Confidence 334444444 679999999999988899999999999999999986543222 2222222222222 568
Q ss_pred cEEEEEeCCCCCccc--------------C-CCHHHHHHHHHh----------cCCeEEEeecCCCCChHHHHHHHHHHc
Q 028507 116 IIVLVGNKTDLVEKR--------------Q-VSIEEGEAKSRE----------LNVMFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 116 piivv~nK~D~~~~~--------------~-~~~~~~~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
++|++.||.|+-++. . -..+++..+... ..+....+.|.+..+++.+|..+.+.+
T Consensus 264 siiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~I 343 (354)
T KOG0082|consen 264 SIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTI 343 (354)
T ss_pred cEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHH
Confidence 899999999996531 1 122333333221 134567778999999999999888876
Q ss_pred C
Q 028507 171 P 171 (208)
Q Consensus 171 ~ 171 (208)
-
T Consensus 344 i 344 (354)
T KOG0082|consen 344 I 344 (354)
T ss_pred H
Confidence 4
No 328
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.97 E-value=5e-09 Score=81.35 Aligned_cols=165 Identities=16% Similarity=0.219 Sum_probs=96.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCC------------------CCCccceee-----EEEEEEE---------
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDF-----LSKTMYL--------- 53 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~-----~~~~~~~--------- 53 (208)
+.-+.++++||+..+|||||+-.|+.+..+.. .....+.+. ....+..
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 45689999999999999999988775433211 111111111 1111111
Q ss_pred -----CCEEEEEEEEEcCCchhhhhchhhh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 028507 54 -----EDRTVRLQLWDTAGQERFRSLIPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (208)
Q Consensus 54 -----~~~~~~~~i~D~~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~ 126 (208)
.+..-.++|+|.+|+++|....-.. -...|.-.+++-++ ..+--+......+.. ..++|+++|.+|+|+
T Consensus 210 WvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaN--aGIiGmTKEHLgLAL--aL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGAN--AGIIGMTKEHLGLAL--ALHVPVFVVVTKIDM 285 (641)
T ss_pred ceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccc--ccceeccHHhhhhhh--hhcCcEEEEEEeecc
Confidence 1112248999999999987644332 23467777777766 222222222222222 245999999999999
Q ss_pred CcccCCCHHHHHHHHH-----------------------------hcCCeEEEeecCCCCChHHHHHHHHHHcCCCccc
Q 028507 127 VEKRQVSIEEGEAKSR-----------------------------ELNVMFIETSAKAGFNIKPLFRKIAAALPGMETL 176 (208)
Q Consensus 127 ~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~ 176 (208)
+.+..+.+ -.+.+.+ +.-+++|.+|..+|.|+ +++..+...++-....
T Consensus 286 CPANiLqE-tmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL-~LLkmFLNlls~R~~~ 362 (641)
T KOG0463|consen 286 CPANILQE-TMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNL-PLLKMFLNLLSLRRQL 362 (641)
T ss_pred CcHHHHHH-HHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCCh-HHHHHHHhhcCccccc
Confidence 87653321 1111111 11258999999999998 4566666666544333
No 329
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=8e-09 Score=80.12 Aligned_cols=171 Identities=18% Similarity=0.263 Sum_probs=101.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCC----------------c-------cceeeEEEEEEECC--------
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA----------------T-------IGIDFLSKTMYLED-------- 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~----------------~-------~~~~~~~~~~~~~~-------- 55 (208)
.-+++++++|.-.+|||||+-.|+.+..+..... + .+.+-..+.+.+..
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 4579999999999999999998886544321111 1 11122222222211
Q ss_pred --EEEEEEEEEcCCchhhhhchhhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 56 --RTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 56 --~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
..--++++|.+|+.+|....-..+. ..|..++|++++..-.+. .+....+... .++|.+++++|+|+.+...
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t--TrEHLgl~~A--L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT--TREHLGLIAA--LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc--cHHHHHHHHH--hCCCeEEEEEeeccccchh
Confidence 1124899999999999876554443 467888888887432222 2222223222 3599999999999976421
Q ss_pred ------------------------CCHHHHHHHHHhc---C-CeEEEeecCCCCChHHHHHHHHHHcCCCccccccccc
Q 028507 132 ------------------------VSIEEGEAKSREL---N-VMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQE 182 (208)
Q Consensus 132 ------------------------~~~~~~~~~~~~~---~-~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 182 (208)
.+.+++...+.+. + .++|.+|+.+|++++- +..+..-++..-...+..++
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l-l~~fLn~Lsp~~~~~e~~~L 398 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL-LRTFLNCLSPAGTAEERIQL 398 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH-HHHHHhhcCCcCChHHHHHH
Confidence 1223333333322 2 3899999999999854 44444545444333333333
No 330
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.93 E-value=3.1e-08 Score=77.14 Aligned_cols=163 Identities=18% Similarity=0.220 Sum_probs=99.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCc--------------cceeeEEEEEEECCE---------------
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT--------------IGIDFLSKTMYLEDR--------------- 56 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--------------- 56 (208)
...++.+.+.|+.+.|||||+-.|..+..+.....+ .+-+.....+-++++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 456799999999999999999999876653322211 111222222222211
Q ss_pred ------EEEEEEEEcCCchhhhhch-hh-hccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 57 ------TVRLQLWDTAGQERFRSLI-PS-YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 57 ------~~~~~i~D~~G~~~~~~~~-~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
.--+.|+|+.||+.|-... +. +-...|..++++.+++. ...+.....-+... ...|+|++.+|+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG--~~~~tkEHLgi~~a--~~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDG--VTKMTKEHLGIALA--MELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCC--cchhhhHhhhhhhh--hcCCEEEEEEecccCc
Confidence 1248899999999875533 33 33578999999999853 34444434444433 3499999999999975
Q ss_pred ccCCC--HHHHH----------------------HHHHhcC---CeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 129 KRQVS--IEEGE----------------------AKSRELN---VMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 129 ~~~~~--~~~~~----------------------~~~~~~~---~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
...+. .+++. ..+.+.+ .|++.+|+.+|+|++ ++..+...++..
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~r 340 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKR 340 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcc
Confidence 42111 01111 1111112 389999999999985 445555555544
No 331
>PRK12289 GTPase RsgA; Reviewed
Probab=98.93 E-value=6.2e-09 Score=82.15 Aligned_cols=95 Identities=16% Similarity=0.253 Sum_probs=69.2
Q ss_pred hhhchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEE
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI 149 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (208)
...+.+..+.++|.+++|+|+.++. ....+..|+..+.. .++|+++|+||+|+...... .........+++.++
T Consensus 79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~ 153 (352)
T PRK12289 79 KTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPL 153 (352)
T ss_pred ccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEE
Confidence 3445556689999999999998775 44456777665532 45999999999999643221 222233346788999
Q ss_pred EeecCCCCChHHHHHHHHHHc
Q 028507 150 ETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~ 170 (208)
.+|++++.|++++++.|...+
T Consensus 154 ~iSA~tg~GI~eL~~~L~~ki 174 (352)
T PRK12289 154 FISVETGIGLEALLEQLRNKI 174 (352)
T ss_pred EEEcCCCCCHHHHhhhhccce
Confidence 999999999999999887543
No 332
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.92 E-value=3.7e-09 Score=74.38 Aligned_cols=94 Identities=24% Similarity=0.226 Sum_probs=63.8
Q ss_pred hhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEe
Q 028507 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET 151 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
+.+.+..++++|++|+|+|++++..... ..+...+. ..+.|+++|+||+|+.+.... .+...+....+.+++.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~i 76 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYV 76 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEE
Confidence 4456667788999999999987643222 11222121 135899999999998543221 11112333456789999
Q ss_pred ecCCCCChHHHHHHHHHHcC
Q 028507 152 SAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 152 sa~~~~~i~~~~~~l~~~~~ 171 (208)
|++++.|++++++.+.+.++
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 77 SAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EccccccHHHHHHHHHHHHh
Confidence 99999999999999998775
No 333
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=2.8e-08 Score=80.93 Aligned_cols=140 Identities=12% Similarity=0.169 Sum_probs=84.4
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCC-CCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhcc
Q 028507 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 2 ~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
.|...++.+=++||||||.|||||++.|+..-..... ....+++ .+.++..++++..+| .+...++. ..+
T Consensus 62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT------vvsgK~RRiTflEcp--~Dl~~miD-vaK 132 (1077)
T COG5192 62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT------VVSGKTRRITFLECP--SDLHQMID-VAK 132 (1077)
T ss_pred CcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE------EeecceeEEEEEeCh--HHHHHHHh-HHH
Confidence 3445567788889999999999999988754321111 1111111 245666789999999 44445444 347
Q ss_pred CCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCc-EEEEEeCCCCCcccCCCHHHHHHHHHh------cCCeEEEee
Q 028507 81 DSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRE------LNVMFIETS 152 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~s 152 (208)
-+|.+++++|.+ ..|+. ..++++.+. .. ++| ++-|+++.|+............++.+. -|+.+|++|
T Consensus 133 IaDLVlLlIdgn--fGfEMETmEFLnil~-~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFyls 207 (1077)
T COG5192 133 IADLVLLLIDGN--FGFEMETMEFLNILI-SH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLS 207 (1077)
T ss_pred hhheeEEEeccc--cCceehHHHHHHHHh-hc--CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEec
Confidence 789999999998 34443 233344333 33 356 666779999865332212222222211 167888888
Q ss_pred cCC
Q 028507 153 AKA 155 (208)
Q Consensus 153 a~~ 155 (208)
...
T Consensus 208 gV~ 210 (1077)
T COG5192 208 GVE 210 (1077)
T ss_pred ccc
Confidence 654
No 334
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.90 E-value=4.5e-09 Score=78.21 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=84.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC------cC-----CCCCCCc---------------cceeeEEEEEEECC------
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD------KF-----DNTYQAT---------------IGIDFLSKTMYLED------ 55 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~------~~-----~~~~~~~---------------~~~~~~~~~~~~~~------ 55 (208)
+.+.|.|.|+||+|||||++.|... ++ +++...+ .....+.....-.+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4589999999999999999988621 11 1111100 00112222222211
Q ss_pred ------------EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 028507 56 ------------RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123 (208)
Q Consensus 56 ------------~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK 123 (208)
-.+.+.|+.|.|--... -....-+|.+++|.-..-.+....++.-+-++.. ++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD--------i~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD--------IFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S--------EEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc--------EEEEeC
Confidence 11458888887732211 1235678999999887655555544444444432 778899
Q ss_pred CCCCcccCCCHHHHHHHHHh-------cCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 124 TDLVEKRQVSIEEGEAKSRE-------LNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
.|...... ...+.+..... +..+++.+||.++.|++++++.|.++..
T Consensus 177 aD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 177 ADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp -SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 99543322 12222222221 1248999999999999999999988654
No 335
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.9e-08 Score=73.65 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=94.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh---chhhhccCCcEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSVA 85 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~~ 85 (208)
+.+|+++|...+|||++-.....+..+.+.-.... +-......+.+.-+.+.+||.||+-.+-. -....++++.++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflES-Tski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLES-TSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeec-cCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 36699999999999998766655443322111000 00001111222346799999999775432 234458899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCccc-CC-C----HHHHHHHHHhcC-----CeEEEee
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKR-QV-S----IEEGEAKSRELN-----VMFIETS 152 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~-~~-~----~~~~~~~~~~~~-----~~~~~~s 152 (208)
|+|+|+.+ +-.+.+..+...+.+.+. +++.+-+.+.|.|-..+. .+ . ..+........| +.++.+|
T Consensus 106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 99999975 345556666666666554 778888888999975431 11 1 111112222222 3556666
Q ss_pred cCCCCChHHHHHHHHHHc
Q 028507 153 AKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 153 a~~~~~i~~~~~~l~~~~ 170 (208)
..+ ..+-+.|..+.+.+
T Consensus 185 IyD-HSIfEAFSkvVQkL 201 (347)
T KOG3887|consen 185 IYD-HSIFEAFSKVVQKL 201 (347)
T ss_pred ecc-hHHHHHHHHHHHHH
Confidence 554 46777777666544
No 336
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.88 E-value=1.2e-08 Score=78.78 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=66.9
Q ss_pred hccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCC
Q 028507 78 YIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 156 (208)
.+.++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... ...........+++++.+|++++
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCC
Confidence 378999999999999887 77888888876654 3489999999999965421 11223333456889999999999
Q ss_pred CChHHHHHHHHH
Q 028507 157 FNIKPLFRKIAA 168 (208)
Q Consensus 157 ~~i~~~~~~l~~ 168 (208)
.|+++++..|..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999988875
No 337
>PRK00098 GTPase RsgA; Reviewed
Probab=98.84 E-value=1.5e-08 Score=78.67 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=64.9
Q ss_pred ccCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCC
Q 028507 79 IRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 157 (208)
+.++|.+++|+|+++|+.... +..|+..+.. .++|+++|+||+|+.+... ...+........+++++++|++++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 589999999999988765544 4666666543 3589999999999963322 1223344455678899999999999
Q ss_pred ChHHHHHHHHHH
Q 028507 158 NIKPLFRKIAAA 169 (208)
Q Consensus 158 ~i~~~~~~l~~~ 169 (208)
|++++++.+...
T Consensus 154 gi~~L~~~l~gk 165 (298)
T PRK00098 154 GLDELKPLLAGK 165 (298)
T ss_pred cHHHHHhhccCc
Confidence 999999988654
No 338
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.84 E-value=4.2e-08 Score=74.22 Aligned_cols=104 Identities=19% Similarity=0.126 Sum_probs=63.3
Q ss_pred EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHH
Q 028507 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG 137 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~ 137 (208)
+.+.|+.|.|--... -.....+|.+++|.=..-.+....++.-+-++.. ++|+||.|..... ....+.
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--------i~vINKaD~~~A~-~a~r~l 211 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--------IIVINKADRKGAE-KAAREL 211 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh--------eeeEeccChhhHH-HHHHHH
Confidence 458888888733222 1234567888888765544444544444444433 7788999954321 111111
Q ss_pred HHH-------HHhcC--CeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 138 EAK-------SRELN--VMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 138 ~~~-------~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
... -.+.+ -+++.+||..|+|++++++.+.++....
T Consensus 212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 111 11223 3899999999999999999998877533
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.83 E-value=9.7e-09 Score=71.03 Aligned_cols=54 Identities=28% Similarity=0.362 Sum_probs=37.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
+++++|.+|+|||||+|+|.+...... ....+.+.....+.+++ .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 899999999999999999998775321 11222233334444443 4799999995
No 340
>PRK12288 GTPase RsgA; Reviewed
Probab=98.83 E-value=3.1e-08 Score=78.23 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=67.4
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC-CHHHHHHHHHhcCCeEEEeecCCCC
Q 028507 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFIETSAKAGF 157 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~sa~~~~ 157 (208)
..++|.+++|++.+...++..+..|+..+.. .++|+++|+||+|+.+.... ...+........+++++++||+++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4679999999999877788889998775532 35899999999999754321 1122223334568899999999999
Q ss_pred ChHHHHHHHHHHc
Q 028507 158 NIKPLFRKIAAAL 170 (208)
Q Consensus 158 ~i~~~~~~l~~~~ 170 (208)
|++++++.|...+
T Consensus 195 GideL~~~L~~ki 207 (347)
T PRK12288 195 GLEELEAALTGRI 207 (347)
T ss_pred CHHHHHHHHhhCC
Confidence 9999999997644
No 341
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.82 E-value=4.4e-08 Score=77.29 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=61.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEE---------------EEEEEEEcCCchh---
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER--- 70 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~--- 70 (208)
+++.|+|.|++|||||++.|+.... .....|.++++.....+.+.+.. ..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999998876 55555666555555555554421 3588999999543
Q ss_pred ----hhhchhhhccCCcEEEEEEeCC
Q 028507 71 ----FRSLIPSYIRDSSVAVVVYDVA 92 (208)
Q Consensus 71 ----~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
........++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2224445688999999999985
No 342
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.8e-08 Score=77.04 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=78.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCC-CccceeeEEEEEEECCE------------------------------
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDR------------------------------ 56 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------------ 56 (208)
.+.-|+++|+-..||||||+.|+.+.++.... +..+.+.+...++.+..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 46789999999999999999999988864322 22222333333322110
Q ss_pred ---------EEEEEEEEcCCch-----------hhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc
Q 028507 57 ---------TVRLQLWDTAGQE-----------RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI 116 (208)
Q Consensus 57 ---------~~~~~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p 116 (208)
.-.++|+||||.- .|......++..+|.++++||...-+--++..+.+..+ .+..-.
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL---kG~Edk 213 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL---KGHEDK 213 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---hCCcce
Confidence 0139999999933 24556677889999999999986443333344444444 333445
Q ss_pred EEEEEeCCCCCcccC
Q 028507 117 IVLVGNKTDLVEKRQ 131 (208)
Q Consensus 117 iivv~nK~D~~~~~~ 131 (208)
+=||.||.|+.+..+
T Consensus 214 iRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 214 IRVVLNKADQVDTQQ 228 (532)
T ss_pred eEEEeccccccCHHH
Confidence 666779999876544
No 343
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.7e-07 Score=77.85 Aligned_cols=146 Identities=21% Similarity=0.273 Sum_probs=86.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCC-CCCCccce-----------------------------------------
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGI----------------------------------------- 44 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~----------------------------------------- 44 (208)
...+||+|.|..++||||++|+++..+..+ ...+++..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 457899999999999999999998665422 22221110
Q ss_pred --eeEEEEEEECCE----EEEEEEEEcCCch---hhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC
Q 028507 45 --DFLSKTMYLEDR----TVRLQLWDTAGQE---RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV 115 (208)
Q Consensus 45 --~~~~~~~~~~~~----~~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 115 (208)
.-....++.++. .-.+.++|.||.+ ...+-...+...+|++|+|.++.+..+... ..++..... ...
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCC
Confidence 000011111110 0137888999955 345556667889999999999976544333 233333322 235
Q ss_pred cEEEEEeCCCCCcccCCCHHHHHHHHHhcC--------CeEEEeecCCC
Q 028507 116 IIVLVGNKTDLVEKRQVSIEEGEAKSRELN--------VMFIETSAKAG 156 (208)
Q Consensus 116 piivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~sa~~~ 156 (208)
.|+|+.||+|.....+.-.+.+....+++. =.++.||++..
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence 577888999986554433444444433332 15788886654
No 344
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.76 E-value=5.3e-08 Score=77.56 Aligned_cols=95 Identities=32% Similarity=0.425 Sum_probs=69.6
Q ss_pred chhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHH----HHHh
Q 028507 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA----KSRE 143 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~----~~~~ 143 (208)
.++|..+...+.+.++++++|+|+.+.. ..|...+....+ +.|+++|+||+|+.+.. ...++... ++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence 4578888888889999999999997643 234444444432 58999999999997533 33334333 3556
Q ss_pred cCC---eEEEeecCCCCChHHHHHHHHHH
Q 028507 144 LNV---MFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 144 ~~~---~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 676 48999999999999999999765
No 345
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.76 E-value=5.7e-09 Score=79.86 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=66.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCE---------------EEEEEEEEcCCchh--
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER-- 70 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~-- 70 (208)
.++++.|||.|++|||||+|.|+.........|..+++.....+.+... ...++++|++|.-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 5789999999999999999999988887777888888877776655431 23599999998443
Q ss_pred -----hhhchhhhccCCcEEEEEEeCC
Q 028507 71 -----FRSLIPSYIRDSSVAVVVYDVA 92 (208)
Q Consensus 71 -----~~~~~~~~~~~~d~~i~v~d~~ 92 (208)
+..-....++.+|+++.|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 2333445588999999999875
No 346
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.76 E-value=2.7e-08 Score=74.30 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=90.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCC-ccceeeEEEEEEECCEEEEEEEEEcCC----------chhhhhch
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI 75 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 75 (208)
.+..++++.|.+++|||+|+|-++..+....... ..+.+.....+.+.. .+.++|.|| ..++..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhH
Confidence 4568999999999999999999987665333222 444444445555443 588999999 22344455
Q ss_pred hhhccCCc---EEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC------CC-----HHHHHHH
Q 028507 76 PSYIRDSS---VAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ------VS-----IEEGEAK 140 (208)
Q Consensus 76 ~~~~~~~d---~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~------~~-----~~~~~~~ 140 (208)
..++.+-+ -+++++|++-+ ...+. ..+.-....++|+.+|+||+|...... .. .....+.
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~-----~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDN-----PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCCh-----HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 55544333 33444565532 11121 111112225699999999999753211 10 1111111
Q ss_pred HHhcCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 141 SRELNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 141 ~~~~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
......+.+.+|+.++.|+++++-.|.+.
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhhh
Confidence 12223467789999999998887666543
No 347
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.75 E-value=3.4e-08 Score=69.60 Aligned_cols=56 Identities=25% Similarity=0.279 Sum_probs=37.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
+.++|+++|.+|+|||||+|+|.+... .....+.+ +.....+.... .+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~--T~~~~~~~~~~---~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGE--TKVWQYITLMK---RIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCe--eEeEEEEEcCC---CEEEEECcCC
Confidence 467899999999999999999997654 22233332 22233333322 3789999983
No 348
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=4.1e-08 Score=82.14 Aligned_cols=120 Identities=23% Similarity=0.188 Sum_probs=81.8
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHhhcCcC------------C--CCCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKF------------D--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
......--+|+++.+...|||||...|+...- - .....+.+++.....+..-.+.+.++++|+|||
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence 34445567899999999999999999873221 1 112223444444444444445578999999999
Q ss_pred hhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 028507 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~ 126 (208)
-+|.+......+-+|++++++|+...-..... .-+++........++|+||+|.
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~qt~----~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTY----AVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccchhHH----HHHHHHHHccCceEEEEehhhh
Confidence 99999999999999999999999742111221 2223222234567888999994
No 349
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=2.1e-08 Score=75.85 Aligned_cols=164 Identities=17% Similarity=0.161 Sum_probs=105.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC---cCCCCCCCccceeeEEEEE---EE----------------------------
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD---KFDNTYQATIGIDFLSKTM---YL---------------------------- 53 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~---~~~~~~~~~~~~~~~~~~~---~~---------------------------- 53 (208)
..++|.-+|+.-.||||++.++.+- +|..+.+...++..-.... +.
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 4689999999999999999988643 3333333332222111100 00
Q ss_pred -CC---EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 028507 54 -ED---RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (208)
Q Consensus 54 -~~---~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 125 (208)
.+ -...+.|+|+|||+-+-........-.|+.++++..++ |++-+.+.. -++... ..++++-||+|
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L----khiiilQNKiD 190 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL----KHIIILQNKID 190 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh----ceEEEEechhh
Confidence 00 01258899999999776655555566788888887764 333333221 112222 56888999999
Q ss_pred CCcccCCC--HHHHHHHHHhc---CCeEEEeecCCCCChHHHHHHHHHHcCCCcccc
Q 028507 126 LVEKRQVS--IEEGEAKSREL---NVMFIETSAKAGFNIKPLFRKIAAALPGMETLS 177 (208)
Q Consensus 126 ~~~~~~~~--~~~~~~~~~~~---~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 177 (208)
+..+++.. .++++.|.... +++++++||.-..|++-+.++|.+.++.-.+..
T Consensus 191 li~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 191 LIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence 98765432 34444454432 569999999999999999999999998654444
No 350
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.68 E-value=6.7e-08 Score=68.96 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=38.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
.++++++|.||+|||||+|+|.+.+. .....+.++ .....+.... .+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T--~~~~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT--KSMQEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE--cceEEEEeCC---CEEEEECcCC
Confidence 47999999999999999999998665 333334433 3333333332 4889999983
No 351
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=9.4e-08 Score=68.29 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=39.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCC-CCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
..++++++|.+|+|||||+|+|.+..+.. ...+.+ +.....+..+ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~--T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGV--TKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCE--EeeeEEEEec---CCEEEEECCCC
Confidence 45799999999999999999999877632 222232 3333333333 35899999994
No 352
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.63 E-value=1.6e-07 Score=66.14 Aligned_cols=88 Identities=18% Similarity=0.191 Sum_probs=57.6
Q ss_pred hccCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCC
Q 028507 78 YIRDSSVAVVVYDVASRQS--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 155 (208)
.+..+|++++|+|+.+|.. ...+..++. . ...++|+++|+||+|+.+.... ......+...+....+.+|++.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHH---h-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4678999999999998632 222333222 2 2345899999999999643321 1122222222233457899999
Q ss_pred CCChHHHHHHHHHHc
Q 028507 156 GFNIKPLFRKIAAAL 170 (208)
Q Consensus 156 ~~~i~~~~~~l~~~~ 170 (208)
+.+++++++.+.+..
T Consensus 80 ~~~~~~L~~~l~~~~ 94 (157)
T cd01858 80 PFGKGSLIQLLRQFS 94 (157)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999999997754
No 353
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.63 E-value=7.9e-08 Score=69.88 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=37.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcC---------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKF---------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
..+++++|.+|+|||||+|+|..... .....+.+ +.....+.... .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gt--T~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGT--TLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCe--eeeeEEEecCC---CCEEEeCcCC
Confidence 46899999999999999999997542 22233333 33334444432 4799999993
No 354
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.59 E-value=1.8e-07 Score=71.98 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=39.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
+.++++++|.||+|||||+|+|.+.+.. ....+.+ +.....+.... .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~--T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGV--TKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCe--ecceEEEEeCC---CEEEEECCCc
Confidence 4689999999999999999999976642 2333333 33333444432 4799999996
No 355
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.59 E-value=2.1e-07 Score=65.38 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=38.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
...+++++|.+|+|||||+++|.+.... ...++.+.+........+. .+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 4578999999999999999999975532 2233444333333233322 5899999983
No 356
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.58 E-value=7.2e-07 Score=66.24 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=59.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh-------hhchhhhccC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRD 81 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 81 (208)
.-++.++|.|.+|||||+..|.+..........++.....-...+++ -++.+.|.||.-+- ........+.
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 35899999999999999999987765444333443344344444444 46999999995431 2234445678
Q ss_pred CcEEEEEEeCCChhh
Q 028507 82 SSVAVVVYDVASRQS 96 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s 96 (208)
|+.+++|.|+..|-+
T Consensus 137 cnli~~vld~~kp~~ 151 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLS 151 (358)
T ss_pred ccEEEEEeeccCccc
Confidence 999999999876543
No 357
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.58 E-value=2.4e-07 Score=71.69 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=40.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
..++++++|.||+|||||+|+|.+.+. .....+.++ .....+..+. .+.++||||.-
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVT--KAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeE--EEEEEEEeCC---cEEEEECCCcC
Confidence 458999999999999999999998765 333334433 3333444433 48899999964
No 358
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.58 E-value=7.2e-08 Score=67.44 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=34.1
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCC------CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFD------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
-.++++|++|||||||+|.|...... .......-.+.....+..+.+ ..++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 46789999999999999999976321 111111111223334444332 5899999976543
No 359
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.58 E-value=3.9e-07 Score=64.03 Aligned_cols=84 Identities=19% Similarity=0.095 Sum_probs=55.5
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 028507 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPL 162 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 162 (208)
|++++|+|+.+|.+... .++.. ......++|+++|+||+|+.+.... ......+....+..++.+|++++.+++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 68999999988765443 22221 1122245899999999998643221 11112232333567899999999999999
Q ss_pred HHHHHHHc
Q 028507 163 FRKIAAAL 170 (208)
Q Consensus 163 ~~~l~~~~ 170 (208)
++.+.+..
T Consensus 77 ~~~i~~~~ 84 (155)
T cd01849 77 ESAFTKQT 84 (155)
T ss_pred HHHHHHHh
Confidence 99987654
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.56 E-value=1.9e-07 Score=65.64 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=39.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
....+++++|.+|+|||||+|.|.+... .....+.++..... .... ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCCC
Confidence 3568899999999999999999997653 33333444433332 2222 24899999983
No 361
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.56 E-value=2.9e-07 Score=83.51 Aligned_cols=113 Identities=22% Similarity=0.235 Sum_probs=70.4
Q ss_pred EEEEcCCCCCHHHHHHHhhcCcCCCCC----CC--ccceeeEEEEEEECCEEEEEEEEEcCCch--------hhhhchhh
Q 028507 12 LVFLGDQSVGKTSIITRFMYDKFDNTY----QA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPS 77 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~ 77 (208)
.+|+|++|+||||++..- +..++-.. .. ..+-+. ....++.+ .-.++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 589999999999999876 33342211 11 111111 12222332 35699999921 11122332
Q ss_pred h---------ccCCcEEEEEEeCCCh-----h----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc
Q 028507 78 Y---------IRDSSVAVVVYDVASR-----Q----SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (208)
Q Consensus 78 ~---------~~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~ 129 (208)
+ -+..+|+|+++|+.+- + ....+...++++....+-.+||+|++||+|+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 2 2458999999999742 1 1234566777788888889999999999998753
No 362
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.53 E-value=9.6e-06 Score=56.17 Aligned_cols=147 Identities=15% Similarity=0.220 Sum_probs=83.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcC-Cchh--------------h--
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA-GQER--------------F-- 71 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G~~~--------------~-- 71 (208)
.+||.+.|+||+|||||+..+...--... ...-.+...++...+....|.|+|+. |... |
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 48999999999999999988763221111 11113455566667777788888887 3111 1
Q ss_pred -----h----hchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH
Q 028507 72 -----R----SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR 142 (208)
Q Consensus 72 -----~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~ 142 (208)
. ...+..+..+|++ ++|--.|.- .....+...+....+.+.|++..+.+.+.. . -.+. ..
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvI--IIDEIGpME-lks~~f~~~ve~vl~~~kpliatlHrrsr~----P---~v~~-ik 150 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVI--IIDEIGPME-LKSKKFREAVEEVLKSGKPLIATLHRRSRH----P---LVQR-IK 150 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEE--EEecccchh-hccHHHHHHHHHHhcCCCcEEEEEecccCC----h---HHHH-hh
Confidence 1 0112223445554 466654421 123556666766666778888877766531 1 1122 22
Q ss_pred hcCCeEEEeecCCCCChHHHHHHHHHHcCC
Q 028507 143 ELNVMFIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 143 ~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
..+..++. .+.+|=+.+++.+...+..
T Consensus 151 ~~~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 151 KLGGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred hcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence 33333332 3455555888888777653
No 363
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.4e-07 Score=74.34 Aligned_cols=118 Identities=21% Similarity=0.277 Sum_probs=86.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC--------cCCCC--------CCCccceeeEEEEEEECCEEEEEEEEEcCCchhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD--------KFDNT--------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
+-.+|.++.+..+||||.-.++++- .++.. .....+++.....+.++.+.++++++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 4568999999999999999988631 11110 1122456666666666666689999999999999
Q ss_pred hhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc
Q 028507 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~ 129 (208)
.-....+++--|+++.|||.+..-....+.-|.+ ....++|-..++||+|....
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhh
Confidence 9999999999999999999984322233444443 44456898888999997543
No 364
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.50 E-value=8.3e-07 Score=66.15 Aligned_cols=83 Identities=22% Similarity=0.156 Sum_probs=51.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC--cCCCCC---CCccceeeEEEEEEEC-CEEEEEEEEEcCCchhhhh------chh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNTY---QATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRS------LIP 76 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~--~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~------~~~ 76 (208)
-.-|.|+|++++|||+|+|.|++. .+.... ..|.++ ........ +....+.++||+|...... ...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi--~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGI--WMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccce--EEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 356889999999999999999988 553221 222222 22222221 2336799999999654322 112
Q ss_pred hhcc--CCcEEEEEEeCCC
Q 028507 77 SYIR--DSSVAVVVYDVAS 93 (208)
Q Consensus 77 ~~~~--~~d~~i~v~d~~~ 93 (208)
..+. -++.+|+..+.+.
T Consensus 85 ~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 85 FALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHhCEEEEeccCcc
Confidence 2223 3788888777764
No 365
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.50 E-value=4.1e-07 Score=65.00 Aligned_cols=91 Identities=18% Similarity=0.115 Sum_probs=60.9
Q ss_pred hchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEee
Q 028507 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS 152 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (208)
......+.++|.+++|+|++++...... .+.. .. .+.|+++|+||+|+.++... ....++....+..++.+|
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~-~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----IL-GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----Hh-cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence 3445668899999999999876432221 1111 11 24789999999998643211 111122233345789999
Q ss_pred cCCCCChHHHHHHHHHHcC
Q 028507 153 AKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 153 a~~~~~i~~~~~~l~~~~~ 171 (208)
++++.|++++.+.+...++
T Consensus 83 a~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999999999988764
No 366
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.48 E-value=6.2e-07 Score=61.97 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=52.5
Q ss_pred hhhccCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeec
Q 028507 76 PSYIRDSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA 153 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa 153 (208)
...+..+|++++|+|+.++.+.. .+..++... ..++|+++|+||+|+.++.. ..+........+..++++|+
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 34578999999999998875433 233333322 24589999999999865332 22334445556788999999
Q ss_pred CCCCC
Q 028507 154 KAGFN 158 (208)
Q Consensus 154 ~~~~~ 158 (208)
.++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98764
No 367
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.45 E-value=4.4e-07 Score=71.15 Aligned_cols=57 Identities=26% Similarity=0.373 Sum_probs=42.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCch
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
+..++.|+|-||||||||||+|.+.+.. ....| |.+.....+.... .+.++||||.-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~---~i~LlDtPGii 188 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDD---GIYLLDTPGII 188 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCC---CeEEecCCCcC
Confidence 4588999999999999999999988762 23333 4455555555544 38999999954
No 368
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.45 E-value=1.9e-06 Score=67.38 Aligned_cols=95 Identities=17% Similarity=0.071 Sum_probs=56.0
Q ss_pred EEEEEEEEcCCchhhh--------hchh---h-hccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 028507 57 TVRLQLWDTAGQERFR--------SLIP---S-YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~--------~~~~---~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 124 (208)
.+.+.|+||||..... .+.. . .-...+..++|+|++.. .+.+.. ...+.... -+.-+|+||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~~---~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEAV---GLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhhC---CCCEEEEECC
Confidence 3579999999954321 1111 1 11356788999999843 233322 22222221 2346777999
Q ss_pred CCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 028507 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 125 D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 163 (208)
|.... .-.+...+...++|+.+++ +|++++++-
T Consensus 270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 95332 2344555677799999888 888877653
No 369
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=4.1e-07 Score=74.70 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=77.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc-----CC-------------CCCCCccceeeEEEEEEECCEEEEEEEEEcCCch
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK-----FD-------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
+--+|.+.-+-.+||||+-++.+.-. .. ......+++.-....+.+. .++++++|||||-
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTPGHV 115 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCCCce
Confidence 34567888889999999998876311 10 1111223333333344444 5889999999999
Q ss_pred hhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
+|.--....++-.|+.|+|+++...-.-....-|.+ +.+ -++|-+..+||+|.....
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~r---y~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKR---YNVPRICFINKMDRMGAS 172 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHh---cCCCeEEEEehhhhcCCC
Confidence 999989999999999999999873211112222322 222 359999999999986544
No 370
>PRK12288 GTPase RsgA; Reviewed
Probab=98.45 E-value=5e-07 Score=71.46 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=35.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCC-CCCC---ccc--eeeEEEEEEECCEEEEEEEEEcCCchhhh
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQA---TIG--IDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~-~~~~---~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
-++|+|.+|||||||+|+|++..... ...+ ..| .+.....+.+.++ ..++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 47899999999999999999654321 1111 111 1222333344332 3599999976644
No 371
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=5.9e-06 Score=61.21 Aligned_cols=156 Identities=16% Similarity=0.198 Sum_probs=96.8
Q ss_pred eeEEEEcCCCC--CHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECC--EEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 10 YKLVFLGDQSV--GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED--RTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 10 ~~i~vvG~~~~--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..++|+|-+|+ ||.+|+.+|....+...........+..+++..+- ..+.+.|.-.- +++.-..........++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic--de~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc--chhccCCcccccceeeE
Confidence 46789999999 99999999998888655555444444444432211 11223332111 11111112223445689
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc------------------------------------
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------------------------------ 129 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~------------------------------------ 129 (208)
++|||.+...++..++.|+....... . -..+.++||.|....
T Consensus 83 vmvfdlse~s~l~alqdwl~htdins-f-dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegs 160 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDINS-F-DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGS 160 (418)
T ss_pred EEEEeccchhhhHHHHhhcccccccc-c-hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccc
Confidence 99999999888999999987432221 1 123556799987531
Q ss_pred --------cCCCHHHHHHHHHhcCCeEEEeecCC------------CCChHHHHHHHHHH
Q 028507 130 --------RQVSIEEGEAKSRELNVMFIETSAKA------------GFNIKPLFRKIAAA 169 (208)
Q Consensus 130 --------~~~~~~~~~~~~~~~~~~~~~~sa~~------------~~~i~~~~~~l~~~ 169 (208)
.-.....+..|+.++++.+++.++.+ ..|++.+|..|...
T Consensus 161 sllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ah 220 (418)
T KOG4273|consen 161 SLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH 220 (418)
T ss_pred cccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence 00122446788889999999999853 33788999888553
No 372
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.40 E-value=3.5e-06 Score=67.02 Aligned_cols=144 Identities=14% Similarity=0.100 Sum_probs=75.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCC--C-CCCCccceeeE------------------EEEEEE---------CCEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFD--N-TYQATIGIDFL------------------SKTMYL---------EDRTV 58 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~--~-~~~~~~~~~~~------------------~~~~~~---------~~~~~ 58 (208)
.-.++|+|++|+||||++..|...... . ......+.+.+ ...... .-...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 457889999999999999988743210 0 00000000110 000000 00124
Q ss_pred EEEEEEcCCchhhhhch----hhh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC-----CcEEEEEeCCCCC
Q 028507 59 RLQLWDTAGQERFRSLI----PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-----VIIVLVGNKTDLV 127 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-----~piivv~nK~D~~ 127 (208)
.+.++||+|........ ... .....-.++|++++.. .+.+...+..+....+.. -+--+|+||.|..
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~--~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSH--GDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccC--hHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 68999999965432221 111 1233456888998742 333333334443332100 1234666999953
Q ss_pred cccCCCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
. ..-.+...+...+.++.+++ +|.++.
T Consensus 295 ~----~~G~~l~~~~~~~lPi~yvt--~Gq~VP 321 (374)
T PRK14722 295 S----NLGGVLDTVIRYKLPVHYVS--TGQKVP 321 (374)
T ss_pred C----CccHHHHHHHHHCcCeEEEe--cCCCCC
Confidence 3 34556677777788777776 555544
No 373
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.39 E-value=5.6e-07 Score=68.70 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=37.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
-.+++|++|||||||+|+|....- ........=.+.....+..+++ -.|+||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence 578899999999999999985321 2222222222344455555433 3789999976643
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.39 E-value=1.8e-06 Score=66.19 Aligned_cols=94 Identities=16% Similarity=0.064 Sum_probs=55.7
Q ss_pred EEEEEEEcCCchhhhhchh-------hh-----ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 028507 58 VRLQLWDTAGQERFRSLIP-------SY-----IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~-------~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 125 (208)
+.+.|+||+|........- .. -...|..++|+|++.. .+.+.. ...+.+.. -+--+|+||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~-~~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQ-AKVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHH-HHHHHhhC---CCCEEEEEccC
Confidence 6799999999653222111 11 1248999999999742 222222 23333222 23466779999
Q ss_pred CCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 028507 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 163 (208)
..... -.+.......+.|+.+++ +|++++++.
T Consensus 229 e~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 229 GTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 64332 344455556688888887 788776653
No 375
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.39 E-value=1.6e-06 Score=66.81 Aligned_cols=100 Identities=23% Similarity=0.220 Sum_probs=65.4
Q ss_pred CCchh-hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhc
Q 028507 66 AGQER-FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL 144 (208)
Q Consensus 66 ~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~ 144 (208)
|||-. ........+..+|++++|+|+.+|.+... ..+..+. .+.|+++|+||+|+.+.... ..........
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAVT--KQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHHH--HHHHHHHHHc
Confidence 55442 23345566889999999999987644332 1111111 24899999999998643211 1111122334
Q ss_pred CCeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 145 NVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 145 ~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
+..++.+|++++.+++++.+.+.+.+.+.
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 66889999999999999999998877543
No 376
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.37 E-value=2.5e-05 Score=63.99 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=54.6
Q ss_pred EEEEEEEcCCch-------------hhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeC
Q 028507 58 VRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNK 123 (208)
Q Consensus 58 ~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK 123 (208)
-++.++|.||.- ..-.+...+..+.+++|+|+.-- +++.-......+-... ..+...|+|.+|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 368999999932 23445667788999999997532 2222222222232222 245668999999
Q ss_pred CCCCcccCCCHHHHHHHHHh
Q 028507 124 TDLVEKRQVSIEEGEAKSRE 143 (208)
Q Consensus 124 ~D~~~~~~~~~~~~~~~~~~ 143 (208)
.|+++....++.+++....-
T Consensus 489 VDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred cchhhhccCCHHHHHHHHhc
Confidence 99999888888887776553
No 377
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.34 E-value=5.1e-06 Score=58.52 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=36.3
Q ss_pred EEEEEEEcCCchhhhhchhh--------hccCCcEEEEEEeCCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 028507 58 VRLQLWDTAGQERFRSLIPS--------YIRDSSVAVVVYDVASRQSFL-NTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piivv~nK~D~ 126 (208)
....++|++|..+....... ..-..+.+++++|+....... ....+...+.... ++|+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence 46788999996543332221 234688999999986432211 1222333443222 667799995
No 378
>PRK13796 GTPase YqeH; Provisional
Probab=98.33 E-value=6e-06 Score=65.99 Aligned_cols=93 Identities=30% Similarity=0.422 Sum_probs=61.9
Q ss_pred hhhhchhhhccCCc-EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH----HHhc
Q 028507 70 RFRSLIPSYIRDSS-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK----SREL 144 (208)
Q Consensus 70 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~~~ 144 (208)
.|...... +...+ .+++|+|+.+.. ..|...+....+ +.|+++|+||+|+... ....++...+ +...
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 45554444 34445 999999998643 233444444332 5789999999999653 2233333333 4455
Q ss_pred CC---eEEEeecCCCCChHHHHHHHHHHc
Q 028507 145 NV---MFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 145 ~~---~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
++ .++.+||+++.|++++++.|.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 65 689999999999999999997753
No 379
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.32 E-value=1.4e-06 Score=65.87 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=35.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCC------CC--CCccceeeEEEEEEECCEEEEEEEEEcCCchhh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDN------TY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
.-.++++|++|||||||+|+|....... .. ...++ .....+...+ ..++||||...+
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT--~~~~l~~l~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTT--THVELFHFHG----GLIADTPGFNEF 184 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcC--CceEEEEcCC----cEEEeCCCcccc
Confidence 3468899999999999999999654311 11 11122 2222233333 379999996553
No 380
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.31 E-value=2.4e-05 Score=62.40 Aligned_cols=156 Identities=21% Similarity=0.283 Sum_probs=86.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcC--------------CCCCCCccceeeEE----------EEEEE-CCEEEEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKF--------------DNTYQATIGIDFLS----------KTMYL-EDRTVRLQLW 63 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~--------------~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~i~ 63 (208)
++=|.||||..+|||||+.+|-..-+ ++-+++..+.+... ..+.+ ++-.+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 46689999999999999999853211 11122222211111 22333 4557899999
Q ss_pred EcCCch-------------------hhhhchh----------hhcc--CCcEEEEEEeCC----ChhhHHHH-HHHHHHH
Q 028507 64 DTAGQE-------------------RFRSLIP----------SYIR--DSSVAVVVYDVA----SRQSFLNT-SKWIDEV 107 (208)
Q Consensus 64 D~~G~~-------------------~~~~~~~----------~~~~--~~d~~i~v~d~~----~~~s~~~~-~~~~~~i 107 (208)
|+.|.- +|..-.+ ..+. ..-|+++.=|.+ .++.+... .+.+.++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 999811 0111000 0111 233666655554 23444433 3333334
Q ss_pred HHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCC--CChHHHHHHHHHH
Q 028507 108 RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG--FNIKPLFRKIAAA 169 (208)
Q Consensus 108 ~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~--~~i~~~~~~l~~~ 169 (208)
. .-++|.+++.|-.+-.. ....+.+.....+++.+++.+++..- +++..+++.++..
T Consensus 177 k---~igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 177 K---EIGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYE 235 (492)
T ss_pred H---HhCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhc
Confidence 3 34599999999887432 33455666677788988888876543 3444555444443
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=98.30 E-value=1.4e-06 Score=68.94 Aligned_cols=57 Identities=25% Similarity=0.164 Sum_probs=34.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCC-CCCCc-----cceeeEEEEEEECCEEEEEEEEEcCCchh
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDN-TYQAT-----IGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.++|+|++|||||||+|+|+...... ...+. .-.+.....+...++ ..++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCccc
Confidence 48999999999999999999654311 11111 001222233444332 37999999654
No 382
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.30 E-value=1.3e-05 Score=64.82 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=50.5
Q ss_pred EEEEEEEEcCCchhhhh-chh---h--hccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 57 TVRLQLWDTAGQERFRS-LIP---S--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
.+.+.|+||+|...... +.. . .....+-+++|+|++-..... .....+.... .+.-+|+||.|....-
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~~---~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDSV---DVGSVIITKLDGHAKG 255 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhcc---CCcEEEEECccCCCCc
Confidence 36799999999543211 111 1 123567899999987432222 1223332221 3456777999964322
Q ss_pred CCCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 028507 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 161 (208)
-.+.......+.|+.+++ +|+.+++
T Consensus 256 ----G~aLs~~~~t~~PI~fig--~Ge~v~D 280 (429)
T TIGR01425 256 ----GGALSAVAATKSPIIFIG--TGEHIDD 280 (429)
T ss_pred ----cHHhhhHHHHCCCeEEEc--CCCChhh
Confidence 233444556677776665 4444433
No 383
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=1.2e-05 Score=66.25 Aligned_cols=139 Identities=16% Similarity=0.154 Sum_probs=74.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC--------cC---CCCCCCc------------cceeeEEEEEE------E-CCEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD--------KF---DNTYQAT------------IGIDFLSKTMY------L-EDRTV 58 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~--------~~---~~~~~~~------------~~~~~~~~~~~------~-~~~~~ 58 (208)
.-.|+|+|+.|+||||++..|... ++ ..+.... .++........ + .-..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 457899999999999999887632 11 0000000 00111100000 0 01235
Q ss_pred EEEEEEcCCchhhhhch----hhh-ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC
Q 028507 59 RLQLWDTAGQERFRSLI----PSY-IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~----~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~ 133 (208)
.+.|+||+|........ ..+ .......++|++.+. +...+...+..+... .+.-+|+||.|... .
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~----~ 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG----R 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc----c
Confidence 79999999954322110 000 001234567777763 344444444444332 45668889999622 3
Q ss_pred HHHHHHHHHhcCCeEEEeecCCCCCh
Q 028507 134 IEEGEAKSRELNVMFIETSAKAGFNI 159 (208)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~sa~~~~~i 159 (208)
.-.+.......+.++.+++ +|..+
T Consensus 500 lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 500 FGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred hhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 4566777778888887776 66666
No 384
>PRK01889 GTPase RsgA; Reviewed
Probab=98.27 E-value=5e-06 Score=66.21 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=57.5
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-hcCCeEEEeecCCCC
Q 028507 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGF 157 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~ 157 (208)
..++|.+++|+++..+-....+.+++..+... +++.++|+||+|+.+... .....+.. ..+++++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997433444455555544432 477788999999975411 11112221 447799999999999
Q ss_pred ChHHHHHHHH
Q 028507 158 NIKPLFRKIA 167 (208)
Q Consensus 158 ~i~~~~~~l~ 167 (208)
+++++..+|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999998885
No 385
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.23 E-value=4.1e-06 Score=64.84 Aligned_cols=100 Identities=21% Similarity=0.201 Sum_probs=65.5
Q ss_pred cCCchh-hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh
Q 028507 65 TAGQER-FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE 143 (208)
Q Consensus 65 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~ 143 (208)
.|||-. -.......+..+|++++|+|+.++.+... .++.... .+.|+++|+||+|+.+... ......+...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 466542 23344556889999999999987644322 1122221 1489999999999854321 1111222234
Q ss_pred cCCeEEEeecCCCCChHHHHHHHHHHcCC
Q 028507 144 LNVMFIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 144 ~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
.+..++.+|++++.+++++.+.+...+.+
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 46788999999999999999988887654
No 386
>PRK14974 cell division protein FtsY; Provisional
Probab=98.23 E-value=8.1e-06 Score=64.21 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=54.9
Q ss_pred EEEEEEEcCCchhhhh-ch---hhh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 58 VRLQLWDTAGQERFRS-LI---PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
+.+.++||+|...... +. ... ....|..++|+|++.... . ......+.... -.--+|+||.|....-.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~-~~~a~~f~~~~---~~~giIlTKlD~~~~~G 296 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--A-VEQAREFNEAV---GIDGVILTKVDADAKGG 296 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--H-HHHHHHHHhcC---CCCEEEEeeecCCCCcc
Confidence 4599999999553211 11 111 235788999999974321 1 11122222222 12366679999744322
Q ss_pred CCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 028507 132 VSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 163 (208)
.+...+...+.|+.+++ +|++++++.
T Consensus 297 ----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 297 ----AALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ----HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 34445556788888887 789887764
No 387
>PRK13695 putative NTPase; Provisional
Probab=98.20 E-value=5.9e-05 Score=53.99 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=42.5
Q ss_pred ccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCC
Q 028507 79 IRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 157 (208)
+..+++ +++|--.+ +... ..+.+.+......+.|++++.+|... ...........+..+++++ .+
T Consensus 94 l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~~---~~ 159 (174)
T PRK13695 94 LEEADV--IIIDEIGKMELKS--PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYELT---PE 159 (174)
T ss_pred cCCCCE--EEEECCCcchhhh--HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEEc---ch
Confidence 445666 57784211 1111 22334444444456888998887532 1233444555566777774 44
Q ss_pred ChHHHHHHHHHHc
Q 028507 158 NIKPLFRKIAAAL 170 (208)
Q Consensus 158 ~i~~~~~~l~~~~ 170 (208)
|=+++.+.+.+.+
T Consensus 160 ~r~~~~~~~~~~~ 172 (174)
T PRK13695 160 NRDSLPFEILNRL 172 (174)
T ss_pred hhhhHHHHHHHHH
Confidence 5557777777654
No 388
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=6.1e-06 Score=62.02 Aligned_cols=117 Identities=16% Similarity=0.313 Sum_probs=70.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCC----ccceeeEEEEEEECCEEEEEEEEEcCCchh-------hhh----
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA----TIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRS---- 73 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~---- 73 (208)
.++|+-||..|.|||||++.|.+-++.....+ ..........+.-.+..++++|+||.|..+ |..
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 48999999999999999999998887544333 333333333344456678999999999221 111
Q ss_pred ---chhhh-------------c--cCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 74 ---LIPSY-------------I--RDSSVAVVVYDVASRQSFLNTSK-WIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 74 ---~~~~~-------------~--~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
....| + ..+++.++.+..+.. ++..+.- .+..+. ..+.||.++-|.|.....
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld----skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD----SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh----hhhhhHHHHHHhhhhhHH
Confidence 11111 1 246666666776642 3333221 122222 346677788888875543
No 389
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.20 E-value=7.6e-06 Score=58.15 Aligned_cols=136 Identities=17% Similarity=0.256 Sum_probs=70.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEc-CCch--------------------
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT-AGQE-------------------- 69 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~~-------------------- 69 (208)
+|.|.|++|+|||||+.+++..-... ..+.. .+....+..++..+.+.+.|. .|..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhcc-CCccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 68999999999999999887433111 11111 233344445566666777777 3311
Q ss_pred --hhhhc----hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh
Q 028507 70 --RFRSL----IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE 143 (208)
Q Consensus 70 --~~~~~----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~ 143 (208)
.+... ....+..++ ++|+|--.+-- .....|.+.+......++|++.++.+.- .....+.+...
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~-------~~~~l~~i~~~ 147 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRS-------DNPFLEEIKRR 147 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCC-------CcHHHHHHHhC
Confidence 01111 111123445 77788654311 1134456666666667788888776652 01123455666
Q ss_pred cCCeEEEeecCCCCCh
Q 028507 144 LNVMFIETSAKAGFNI 159 (208)
Q Consensus 144 ~~~~~~~~sa~~~~~i 159 (208)
.+..+++++..+.+.+
T Consensus 148 ~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 148 PDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTSEEEE--TTTCCCH
T ss_pred CCcEEEEeChhHHhhH
Confidence 6788999877666554
No 390
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.20 E-value=2.6e-05 Score=56.85 Aligned_cols=91 Identities=15% Similarity=0.057 Sum_probs=51.6
Q ss_pred EEEEEEEcCCchhhhhc----hhhh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 58 VRLQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
+.+.++||+|....... ...+ ....+-+++|.+++.. .+.+.. ........+ +--+|+||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~--~~~~~~-~~~~~~~~~---~~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG--QEDLEQ-ALAFYEAFG---IDGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG--GHHHHH-HHHHHHHSS---TCEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC--hHHHHH-HHHHhhccc---CceEEEEeecCCC---
Confidence 45899999995432211 1111 1257788999999843 223332 222222221 2245569999533
Q ss_pred CCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 132 VSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
..-.+...+...+.|+-+++ +|++++
T Consensus 155 -~~G~~l~~~~~~~~Pi~~it--~Gq~V~ 180 (196)
T PF00448_consen 155 -RLGALLSLAYESGLPISYIT--TGQRVD 180 (196)
T ss_dssp -TTHHHHHHHHHHTSEEEEEE--SSSSTT
T ss_pred -CcccceeHHHHhCCCeEEEE--CCCChh
Confidence 23456777778899888776 666663
No 391
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.19 E-value=3.7e-05 Score=60.19 Aligned_cols=88 Identities=31% Similarity=0.271 Sum_probs=52.3
Q ss_pred EEEEEEEcCCchhhhhchhhh--------ccCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 028507 58 VRLQLWDTAGQERFRSLIPSY--------IRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK~D~~ 127 (208)
....++.+.|...-......+ .-..|++|-|+|+..-..... .......+... + +|++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-D-----~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-D-----VIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-c-----EEEEecccCC
Confidence 457788888866543322222 225678999999974322111 12333334322 2 7778999998
Q ss_pred cccCCCHHHHHHHHHhcC--CeEEEeec
Q 028507 128 EKRQVSIEEGEAKSRELN--VMFIETSA 153 (208)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~--~~~~~~sa 153 (208)
++.. .+..+.....++ ++++.++.
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 8764 344455555544 58888776
No 392
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.17 E-value=7.2e-06 Score=61.11 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=76.4
Q ss_pred EEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHHh----cCCCCcEEEEEeCCC
Q 028507 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ-------SFLNTSKWIDEVRTE----RGSDVIIVLVGNKTD 125 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~~----~~~~~piivv~nK~D 125 (208)
.++|+.+|.+|+.+.+.-|-..+..+.++|||..++..+ +-..+++-+..+... -...+.+|+..||.|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 367999999999999999999999999999999987532 122233333322221 113466899999999
Q ss_pred CCccc------------------------------CCCHHHHHHHHHhc-------------CCeEEEeecCCCCChHHH
Q 028507 126 LVEKR------------------------------QVSIEEGEAKSREL-------------NVMFIETSAKAGFNIKPL 162 (208)
Q Consensus 126 ~~~~~------------------------------~~~~~~~~~~~~~~-------------~~~~~~~sa~~~~~i~~~ 162 (208)
+..+. .....+++.+.... -+....+.|.+.++|..+
T Consensus 281 llaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrV 360 (379)
T KOG0099|consen 281 LLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV 360 (379)
T ss_pred HHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHH
Confidence 86421 01111222222211 134566888999999999
Q ss_pred HHHHHHHcCCCc
Q 028507 163 FRKIAAALPGME 174 (208)
Q Consensus 163 ~~~l~~~~~~~~ 174 (208)
|+-....+..++
T Consensus 361 FnDcrdiIqr~h 372 (379)
T KOG0099|consen 361 FNDCRDIIQRMH 372 (379)
T ss_pred HHHHHHHHHHHH
Confidence 998877765544
No 393
>PRK13796 GTPase YqeH; Provisional
Probab=98.16 E-value=3.7e-06 Score=67.23 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=37.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcC------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
..++.++|.+|||||||+|+|+.... ..+..|.++.+ ...+..+++ ..++||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCCC---cEEEECCCcc
Confidence 34799999999999999999985431 12333444333 333344332 4799999964
No 394
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.16 E-value=2e-05 Score=60.37 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=69.7
Q ss_pred hhhchhhhccCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEE
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI 149 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (208)
...+.+.-+.+.|-+++|+.+.+|+--.. +.+++-.. ... ++..++++||+|+.+.......+.......+|++++
T Consensus 69 kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a-e~~--gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~ 145 (301)
T COG1162 69 KNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLA-EAG--GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL 145 (301)
T ss_pred cCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHH-HHc--CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEE
Confidence 34445555667899999999998864444 44444333 333 366677789999987665443455666677899999
Q ss_pred EeecCCCCChHHHHHHHHHHc
Q 028507 150 ETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~ 170 (208)
.+|++++++++++.+.+...+
T Consensus 146 ~~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 146 FVSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred EecCcCcccHHHHHHHhcCCe
Confidence 999999999999999887765
No 395
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.15 E-value=5.6e-06 Score=66.07 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=37.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcC------CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
.++.++|.+|||||||+|+|+.... ..+..|.++.. ...+..++ .+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeCC---CCEEEECCCCCC
Confidence 4899999999999999999996432 22333443333 33333322 267999999653
No 396
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.11 E-value=7.2e-06 Score=63.45 Aligned_cols=60 Identities=23% Similarity=0.175 Sum_probs=37.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCC-C-----CccceeeEEEEEEECCEEEEEEEEEcCCchhh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY-Q-----ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
.-.++++|++|+|||||+|.|++....... . .....+.....+...+. ..++||||..++
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 357899999999999999999975432211 1 11112222333444322 368999997654
No 397
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.09 E-value=8.9e-06 Score=58.74 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=60.3
Q ss_pred EEEEEEcCCchhhhhc---hhhh---ccCC---cEEEEEEeCC-ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 59 RLQLWDTAGQERFRSL---IPSY---IRDS---SVAVVVYDVA-SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~---~~~~---~~~~---d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
.+.++|+||+-+.... .+.. +.+. =.+++++|.. =.++...+...+..+..-....+|.|=|.+|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 4899999997664331 1111 2221 2445555543 012333344444444444445699999999999875
Q ss_pred ccCCCHHHHHHH-------------------------------HHhcCC-eEEEeecCCCCChHHHHHHHHHHcC
Q 028507 129 KRQVSIEEGEAK-------------------------------SRELNV-MFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 129 ~~~~~~~~~~~~-------------------------------~~~~~~-~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
.. +..+.++| ...++. .+++....+-++++.++..|...+.
T Consensus 179 ~~--~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 179 DK--NKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred hh--hHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 41 11222221 122233 5666766777777777777766554
No 398
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=6.5e-05 Score=60.80 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=79.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCC---CCCCc--------------------cceeeEEEEEE-------ECCEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQAT--------------------IGIDFLSKTMY-------LEDRT 57 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~---~~~~~--------------------~~~~~~~~~~~-------~~~~~ 57 (208)
..-.++++|+.|+||||++..|.+..... ..... .++......-. ..-..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 34589999999999999999776431100 00000 00000000000 00012
Q ss_pred EEEEEEEcCCchhhhh----chhhh--ccCCcEEEEEEeCC-ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVVVYDVA-SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
..+.++||+|...... ....+ ....+-.++|+|++ ..+... ..+..+.. . -+-=+|+||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~---~~~~~f~~---~-~~~~~I~TKlDEt~-- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD---EVISAYQG---H-GIHGCIITKVDEAA-- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH---HHHHHhcC---C-CCCEEEEEeeeCCC--
Confidence 3589999999553211 11111 12345677888988 333333 33332221 1 22345669999633
Q ss_pred CCCHHHHHHHHHhcCCeEEEeecCCCCCh-HHHH----HHHHHHcCC
Q 028507 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI-KPLF----RKIAAALPG 172 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i-~~~~----~~l~~~~~~ 172 (208)
..-.+...+...++++.+++ +|.++ +++. +.|.+.+.+
T Consensus 341 --~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 341 --SLGIALDAVIRRKLVLHYVT--NGQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred --CccHHHHHHHHhCCCEEEEE--CCCCchhhhhhCCHHHHHHHHhc
Confidence 34456677778888888776 67776 3332 345555544
No 399
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.09 E-value=5.2e-05 Score=61.79 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=51.7
Q ss_pred EEEEEEEcCCchhhh----hchhhhcc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 58 VRLQLWDTAGQERFR----SLIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
+.+.|+||+|..... .....++. ...-.++|++++- ....+...+..+... + +--+|+||.|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 569999999964322 11222222 2346677888863 223333333333211 1 1246679999632
Q ss_pred CCCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 028507 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 159 (208)
....+...+...++++.+++ +|.++
T Consensus 372 --~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 23456777788898887776 66665
No 400
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=5.5e-06 Score=65.23 Aligned_cols=155 Identities=17% Similarity=0.203 Sum_probs=92.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCc--C-----------------------------CCCCCCccceeeEEEEEEECC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--F-----------------------------DNTYQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (208)
-..++++++|...+||||+-..++... + ........+.+.....+...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte- 155 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE- 155 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec-
Confidence 357899999999999999977664211 0 01111111222222222222
Q ss_pred EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCC---hhhHHHH--HHHHHHHHHhcCCCCcEEEEEeCCCCCcc-
Q 028507 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS---RQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTDLVEK- 129 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~--~~~~~~i~~~~~~~~piivv~nK~D~~~~- 129 (208)
...++|.|+|||..|-...-.-..++|..++|+++-- ...|+.- .+....+....+ -...++++||+|-..-
T Consensus 156 -~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 156 -NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDPTVN 233 (501)
T ss_pred -ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCCccC
Confidence 2469999999999988776667789999999998842 1233332 222222333332 2446778899996431
Q ss_pred -cCCCH----HHHHHHHHhcC------CeEEEeecCCCCChHHHHH
Q 028507 130 -RQVSI----EEGEAKSRELN------VMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 130 -~~~~~----~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~ 164 (208)
+.-.. .....+...+| ..++++|..+|.++++...
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 11112 22333444333 4789999999999887654
No 401
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.07 E-value=8.5e-06 Score=59.72 Aligned_cols=116 Identities=15% Similarity=0.165 Sum_probs=70.0
Q ss_pred EEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhh----------HHHHHHHHHHHHHhc-CCCCcEEEEEeCCC
Q 028507 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS----------FLNTSKWIDEVRTER-GSDVIIVLVGNKTD 125 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~i~~~~-~~~~piivv~nK~D 125 (208)
.+.+.++|.+|+...+.-|..++.+...+++++..+..+. .+.-......+..+- =.+.++|+..||.|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 3457788888887777777777777777777766653322 222222222222211 14577999999999
Q ss_pred CCcccC----------------CCHHHHHHHHHhc----C------CeEEEeecCCCCChHHHHHHHHHHcCC
Q 028507 126 LVEKRQ----------------VSIEEGEAKSREL----N------VMFIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 126 ~~~~~~----------------~~~~~~~~~~~~~----~------~~~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
+.++.. .....+.+|.... + +.-..+.|.+.+||..+|..+...+..
T Consensus 278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 976421 1222333333221 1 123567889999999999988877643
No 402
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.06 E-value=9.2e-05 Score=58.95 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=83.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcC---CCCCCCccceeeEEE---------------E--EEEC----------CEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSK---------------T--MYLE----------DRTV 58 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~---------------~--~~~~----------~~~~ 58 (208)
.-.|++|||.||||||-+..|...-. ........+.|.+.. . +... -...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56789999999999999887764332 111111111111110 0 0000 0224
Q ss_pred EEEEEEcCCchhhhhc----hhhhccC--CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC
Q 028507 59 RLQLWDTAGQERFRSL----IPSYIRD--SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~ 132 (208)
.+.++||.|...+... ...++.. ..-..+|++++. ....+.+.+..++.. ..--+|+||.|-. .
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~----~i~~~I~TKlDET----~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLF----PIDGLIFTKLDET----T 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhccC----CcceeEEEccccc----C
Confidence 6999999996654332 2223322 335566778773 345666666655432 1124556999953 2
Q ss_pred CHHHHHHHHHhcCCeEEEeecCCCCChHH-H----HHHHHHHcCCCcc
Q 028507 133 SIEEGEAKSRELNVMFIETSAKAGFNIKP-L----FRKIAAALPGMET 175 (208)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~-~----~~~l~~~~~~~~~ 175 (208)
+.-.....+.+.+.|+-+++ +|.+|-+ + -.+|++.+.+...
T Consensus 353 s~G~~~s~~~e~~~PV~YvT--~GQ~VPeDI~va~~~~Lv~~~~g~~~ 398 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVT--NGQRVPEDIVVANPDYLVRRILGTFA 398 (407)
T ss_pred chhHHHHHHHHhCCCeEEEe--CCCCCCchhhhcChHHHHHHHhcccc
Confidence 34555666777777776665 5655432 2 2466666654433
No 403
>PRK00098 GTPase RsgA; Reviewed
Probab=98.06 E-value=9.7e-06 Score=63.08 Aligned_cols=59 Identities=20% Similarity=0.101 Sum_probs=35.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCC-CCC-----ccceeeEEEEEEECCEEEEEEEEEcCCchh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQA-----TIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
...++++|++|+|||||+|.|.+...... ..+ ..-.+.....+...+. ..++||||...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 44689999999999999999986543211 111 0001122233333322 47899999654
No 404
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.06 E-value=0.00023 Score=51.14 Aligned_cols=85 Identities=18% Similarity=0.170 Sum_probs=58.3
Q ss_pred EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHH
Q 028507 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~ 135 (208)
..+.+.|+|+|+.... .....+..+|.+++++..+. .+...+..+++.+... +.++.+|+|+.|.... ...
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 3568999999964322 23445688999999999873 4556666666655543 3678899999986432 345
Q ss_pred HHHHHHHhcCCeEE
Q 028507 136 EGEAKSRELNVMFI 149 (208)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (208)
+.++++.+.+++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 66777777787655
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.03 E-value=0.00011 Score=52.57 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=45.8
Q ss_pred EEEEEEEcCCchhh----hhchhhh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 58 VRLQLWDTAGQERF----RSLIPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~----~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
..+.|+|++|...+ ......+ ....+.+++|+|...... ...+...+....+ ..-+|.||.|......
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~g 156 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARGG 156 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCcc
Confidence 45889999996422 1111111 134899999999864432 2233444433332 2456669999754332
Q ss_pred CCHHHHHHHHHhcCCeEEE
Q 028507 132 VSIEEGEAKSRELNVMFIE 150 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~ 150 (208)
.+...+...++++..
T Consensus 157 ----~~~~~~~~~~~p~~~ 171 (173)
T cd03115 157 ----AALSIRAVTGKPIKF 171 (173)
T ss_pred ----hhhhhHHHHCcCeEe
Confidence 223355566666544
No 406
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.01 E-value=2.6e-05 Score=56.08 Aligned_cols=81 Identities=26% Similarity=0.203 Sum_probs=43.0
Q ss_pred EEEEEEEcCCchhhhhch--h---hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC
Q 028507 58 VRLQLWDTAGQERFRSLI--P---SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~--~---~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~ 132 (208)
....|+.+.|......+. . ...-..+.+|.|+|+..-.........+..-...++ ++++||+|+.+..+
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~~~- 158 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSDEQ- 158 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHHH--
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCChhh-
Confidence 457788888855544431 0 012356899999999654323333332222222322 77789999977652
Q ss_pred CHHHHHHHHHhc
Q 028507 133 SIEEGEAKSREL 144 (208)
Q Consensus 133 ~~~~~~~~~~~~ 144 (208)
..++.++..++.
T Consensus 159 ~i~~~~~~ir~l 170 (178)
T PF02492_consen 159 KIERVREMIREL 170 (178)
T ss_dssp -HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 234555555544
No 407
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.01 E-value=8e-05 Score=60.25 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=77.9
Q ss_pred EEEEE-CCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhh-------HHHHHHHHHHHHHhc----CCCCc
Q 028507 49 KTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS-------FLNTSKWIDEVRTER----GSDVI 116 (208)
Q Consensus 49 ~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~i~~~~----~~~~p 116 (208)
..+.+ .+ ..+.++|.+|+...+.-|..++.+++++|||+++++.+. ...+.+-+..+.... -.+.|
T Consensus 228 ~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~ 305 (389)
T PF00503_consen 228 IDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTP 305 (389)
T ss_dssp EEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSE
T ss_pred EEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCc
Confidence 34444 44 679999999999889999999999999999999874321 122333333333322 25699
Q ss_pred EEEEEeCCCCCcc----------------c--CCCHHHHHHHHHhc------------CCeEEEeecCCCCChHHHHHHH
Q 028507 117 IVLVGNKTDLVEK----------------R--QVSIEEGEAKSREL------------NVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 117 iivv~nK~D~~~~----------------~--~~~~~~~~~~~~~~------------~~~~~~~sa~~~~~i~~~~~~l 166 (208)
++|++||.|+..+ . .-..+.+..+.... .+.++.++|.+..++..+|+.+
T Consensus 306 iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v 385 (389)
T PF00503_consen 306 IILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAV 385 (389)
T ss_dssp EEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHH
T ss_pred eEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHh
Confidence 9999999997532 0 02234444443321 1256688888888888888888
Q ss_pred HHH
Q 028507 167 AAA 169 (208)
Q Consensus 167 ~~~ 169 (208)
.+.
T Consensus 386 ~~~ 388 (389)
T PF00503_consen 386 KDI 388 (389)
T ss_dssp HHH
T ss_pred cCc
Confidence 764
No 408
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.99 E-value=0.0002 Score=56.19 Aligned_cols=85 Identities=11% Similarity=0.090 Sum_probs=47.3
Q ss_pred EEEEEEEcCCchhhhhchhhhc--------cCCcEEEEEEeCCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 58 VRLQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDVASRQSFL-NTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
....++++.|......+...+. -..+++|.|+|+.+-.... ........+... + +|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A-D-----~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA-D-----RILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC-C-----EEEEeccccCC
Confidence 4567889999765544443321 1358899999996422111 111122233222 1 77779999876
Q ss_pred ccCCCHHHHHHHHHhcC--CeEEEee
Q 028507 129 KRQVSIEEGEAKSRELN--VMFIETS 152 (208)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~~s 152 (208)
+. ++.....+.++ ++++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 42 34555555443 4666654
No 409
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=0.00012 Score=58.62 Aligned_cols=140 Identities=19% Similarity=0.201 Sum_probs=74.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC----c--C---CCCCCC------------ccceeeEEEEE--E----E---C-CEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD----K--F---DNTYQA------------TIGIDFLSKTM--Y----L---E-DRT 57 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~----~--~---~~~~~~------------~~~~~~~~~~~--~----~---~-~~~ 57 (208)
...|+|+|+.|+||||++..|... . + ..+... ..++......- . + . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 368999999999999999988521 1 1 011110 00111110000 0 0 0 012
Q ss_pred EEEEEEEcCCchhhhhc----hhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 58 VRLQLWDTAGQERFRSL----IPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
+.+.|+||+|....... ....+ ...+.+++|+|++-. ...+...+..+.. . -.--+|+||.|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-~---~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-I---HIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-C---CCCEEEEEcccCCC---
Confidence 57899999995432111 11122 235678888998622 2333344444432 1 22355669999643
Q ss_pred CCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 132 VSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
..-.+...+...++|+.+++ +|+++-
T Consensus 392 -k~G~iLni~~~~~lPIsyit--~GQ~VP 417 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT--DGQDVK 417 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 23455666777788877765 555543
No 410
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=7e-05 Score=59.56 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=51.5
Q ss_pred EEEEEEEcCCchhhhh----chhhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 58 VRLQLWDTAGQERFRS----LIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
+.+.|+||+|...... ....+. ...+.+++|.+++ ....++...+..+. .. -+--+|+||.|...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~---~l-~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLA---EI-PIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcC---cC-CCCEEEEEcccCCC---
Confidence 5799999999643221 111122 2446667777764 22333333333321 11 22356679999632
Q ss_pred CCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 028507 132 VSIEEGEAKSRELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 161 (208)
..-.+...+...+.|+.+++ +|+++.+
T Consensus 357 -~~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 24456667778888887776 5665553
No 411
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.00021 Score=61.70 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=58.4
Q ss_pred EEEEEEEcCCchhhhh----chhhh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 58 VRLQLWDTAGQERFRS----LIPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
+.+.|+||+|...... ..... ....+-.++|+|++. ..+.+...+..+......+ +-=+|+||.|-..
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~--~~~~l~~i~~~f~~~~~~~-i~glIlTKLDEt~--- 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS--HGDTLNEVVHAYRHGAGED-VDGCIITKLDEAT--- 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC--cHHHHHHHHHHHhhcccCC-CCEEEEeccCCCC---
Confidence 4689999999332111 11111 234556788999873 2233333333333221111 2245669999643
Q ss_pred CCHHHHHHHHHhcCCeEEEeecCCCCCh-HHHH----HHHHHHcCC
Q 028507 132 VSIEEGEAKSRELNVMFIETSAKAGFNI-KPLF----RKIAAALPG 172 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i-~~~~----~~l~~~~~~ 172 (208)
..-.+.......++++.+++ +|++| +++. +.+.+.+..
T Consensus 338 -~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 338 -HLGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred -CccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence 23455666777888888776 67777 4443 345555544
No 412
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.92 E-value=0.00012 Score=60.19 Aligned_cols=103 Identities=12% Similarity=0.071 Sum_probs=55.7
Q ss_pred EEEEEEcCCchhhhhch---hhhccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC
Q 028507 59 RLQLWDTAGQERFRSLI---PSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~---~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~ 132 (208)
.+.++||+|........ ...+.. ..-.++|+|++.. ...+......+.. ...--+|+||.|-..
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~----~~~~g~IlTKlDet~---- 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRG----PGLAGCILTKLDEAA---- 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhcc----CCCCEEEEeCCCCcc----
Confidence 58899999943322110 011111 2236788888732 2333322222221 123356679999532
Q ss_pred CHHHHHHHHHhcCCeEEEeecCCCCCh-HHHH----HHHHHHcCCC
Q 028507 133 SIEEGEAKSRELNVMFIETSAKAGFNI-KPLF----RKIAAALPGM 173 (208)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~sa~~~~~i-~~~~----~~l~~~~~~~ 173 (208)
..-.+...+...++++.+++ +|++| +++. +.|++.+.+.
T Consensus 406 ~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~~ 449 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFCA 449 (484)
T ss_pred cchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhcC
Confidence 34566777778888888776 67777 4443 3455555443
No 413
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=2.3e-05 Score=63.53 Aligned_cols=125 Identities=21% Similarity=0.247 Sum_probs=75.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc------------CC----CCCCCccceeeEEEEEE--------------ECCEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK------------FD----NTYQATIGIDFLSKTMY--------------LEDRTVR 59 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~------------~~----~~~~~~~~~~~~~~~~~--------------~~~~~~~ 59 (208)
-++-++.+...|||||-..|.... |- .+.+..+++.-....+. .++..+-
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 356778889999999999887321 10 01111111111111111 1234567
Q ss_pred EEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc-ccCCCHHHHH
Q 028507 60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-KRQVSIEEGE 138 (208)
Q Consensus 60 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~ 138 (208)
++++|.|||-+|.+.....++-.|+.++|+|+-+.--...-.-+.+.+... +.-++++||.|.+- +-++..++..
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER----IkPvlv~NK~DRAlLELq~~~EeLy 175 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER----IKPVLVMNKMDRALLELQLSQEELY 175 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhh----ccceEEeehhhHHHHhhcCCHHHHH
Confidence 999999999999999999999999999999987532222222223444333 33366779999642 2334444443
No 414
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=7e-05 Score=67.23 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=66.1
Q ss_pred EEEEcCCCCCHHHHHHHhhcCcCCC--CC----CCccceeeEEEEEEECCEEEEEEEEEcCCch--------hhhhchhh
Q 028507 12 LVFLGDQSVGKTSIITRFMYDKFDN--TY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPS 77 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~ 77 (208)
-+|+|++|+||||++..- +..|+- .. ....+ +..+ ...+.+ .-.++||.|.. .-...|..
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~c-dwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNC-DWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-Cccc-Cccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence 479999999999998532 222211 10 01111 1111 122222 36788988821 11112222
Q ss_pred h---------ccCCcEEEEEEeCCC-----hhh----HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc
Q 028507 78 Y---------IRDSSVAVVVYDVAS-----RQS----FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (208)
Q Consensus 78 ~---------~~~~d~~i~v~d~~~-----~~s----~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~ 129 (208)
+ .+..+|+|+.+|+.+ +.. ...+...++++....+-..||+|++||.|+...
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 2 457899999999863 111 223455577777777778999999999999764
No 415
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.00021 Score=57.40 Aligned_cols=106 Identities=9% Similarity=0.041 Sum_probs=59.6
Q ss_pred EEEEEEEcCCchhhhh----chhhhccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 58 VRLQLWDTAGQERFRS----LIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
+.+.++||+|...... -....+.. -+-.++|+|++.. ...+...+..... . -+-=+|+||.|-..
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~---~-~~~~~I~TKlDet~-- 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP---F-SYKTVIFTKLDETT-- 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC---C-CCCEEEEEeccCCC--
Confidence 5699999999543221 11112222 2257899999843 3444433333321 1 22355669999533
Q ss_pred CCCHHHHHHHHHhcCCeEEEeecCCCCCh-HHHH----HHHHHHcCCCcc
Q 028507 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI-KPLF----RKIAAALPGMET 175 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i-~~~~----~~l~~~~~~~~~ 175 (208)
..-.+...+...+.|+.+++ +|+++ +++. ..+++.+..+.-
T Consensus 327 --~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~~~~~~~~~~l~g~~~ 372 (388)
T PRK12723 327 --CVGNLISLIYEMRKEVSYVT--DGQIVPHNISIAEPLTFIKKINGYRI 372 (388)
T ss_pred --cchHHHHHHHHHCCCEEEEe--CCCCChhhhhhCCHHHHHHHhcCCCc
Confidence 23455666777788877775 67776 4443 356666655543
No 416
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00013 Score=58.79 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=69.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCc-------C---CCCCCC------------ccceeeEEEE-E-----EECCEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDK-------F---DNTYQA------------TIGIDFLSKT-M-----YLEDRTVRL 60 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~-------~---~~~~~~------------~~~~~~~~~~-~-----~~~~~~~~~ 60 (208)
..-++|+|++|+||||++..|.... . ..+... ..+.+..... . ......+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3458899999999999998886321 0 000000 0011111000 0 001123568
Q ss_pred EEEEcCCchhhhh----chhhhcc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 61 QLWDTAGQERFRS----LIPSYIR-----DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 61 ~i~D~~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
.++||+|...... .+..++. ...-.++|+|++.. .+.+...+..+.. . -+--+|+||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f~~-~---~~~glIlTKLDEt~--- 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAYES-L---NYRRILLTKLDEAD--- 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHhcC-C---CCCEEEEEcccCCC---
Confidence 9999999542111 1111111 23467889998743 2333333333311 1 22355669999632
Q ss_pred CCHHHHHHHHHhcCCeEEEee
Q 028507 132 VSIEEGEAKSRELNVMFIETS 152 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (208)
..-.+...+...+.|+.+++
T Consensus 374 -~~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 374 -FLGSFLELADTYSKSFTYLS 393 (432)
T ss_pred -CccHHHHHHHHHCCCEEEEe
Confidence 23445666777788777665
No 417
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.79 E-value=5e-05 Score=61.89 Aligned_cols=90 Identities=17% Similarity=0.059 Sum_probs=50.1
Q ss_pred EEEEEEcCCchhhhhc-h---h--hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC
Q 028507 59 RLQLWDTAGQERFRSL-I---P--SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~-~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~ 132 (208)
.+.|+||+|....... . . ......|.+++|+|++... + .......+.... -..-+|.||.|....
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~-av~~a~~F~~~l---~i~gvIlTKlD~~a~--- 247 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--Q-AKNQAKAFHEAV---GIGGIIITKLDGTAK--- 247 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--H-HHHHHHHHHhcC---CCCEEEEecccCCCc---
Confidence 6899999995442211 1 1 1134678999999987532 2 222223332221 123566799996332
Q ss_pred CHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 133 SIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
.-.+.......+.|+.+++ +|+.++
T Consensus 248 -~G~~ls~~~~~~~Pi~fig--~Ge~v~ 272 (437)
T PRK00771 248 -GGGALSAVAETGAPIKFIG--TGEKID 272 (437)
T ss_pred -ccHHHHHHHHHCcCEEEEe--cCCCcc
Confidence 2344556667788777766 344443
No 418
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.78 E-value=0.00014 Score=41.39 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=31.2
Q ss_pred cCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 028507 80 RDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 125 (208)
.-.++++|++|.+.. .+.+.....+.+++.... +.|+++|.||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 456899999999853 467778888888888773 699999999998
No 419
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.78 E-value=0.00011 Score=51.25 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=35.2
Q ss_pred EEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 028507 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 125 (208)
.+.+.|+||+|..... ..++..+|-+|+|...+-.+.+..++ ..+...++ ++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~~~~~-----~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAIK---AGIMEIAD-----IVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHhh---hhHhhhcC-----EEEEeCCC
Confidence 3579999998854222 34788999999988876323222211 12222222 77789987
No 420
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.77 E-value=3.2e-05 Score=62.81 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=40.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCch
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
.+.|.+||-|||||||+||+|.+.+.. .+..|+.+..+ -++.+.. .+.+.|+||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHF--QTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHF--QTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCccee--EEEEcCC---CceecCCCCcc
Confidence 589999999999999999999988753 34445544333 3333333 37899999954
No 421
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.74 E-value=0.00058 Score=50.47 Aligned_cols=61 Identities=31% Similarity=0.371 Sum_probs=39.0
Q ss_pred EEEEEcC-CchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 028507 60 LQLWDTA-GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (208)
Q Consensus 60 ~~i~D~~-G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~ 126 (208)
+.++||- |.+.|. +....++|.+|+|+|.+- .++....+ +.++....+ -.++.+|.||.|-
T Consensus 136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~elg-~k~i~~V~NKv~e 197 (255)
T COG3640 136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEELG-IKRIFVVLNKVDE 197 (255)
T ss_pred EEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHhC-CceEEEEEeeccc
Confidence 5555552 333322 344678999999999983 45555444 444444443 3789999999984
No 422
>PRK10867 signal recognition particle protein; Provisional
Probab=97.72 E-value=0.00069 Score=55.27 Aligned_cols=85 Identities=11% Similarity=0.024 Sum_probs=47.1
Q ss_pred EEEEEEEcCCchhhhh-ch---hhh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 58 VRLQLWDTAGQERFRS-LI---PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
+.+.|+||+|...... .. ..+ .-..+.+++|+|+... .........+.... -..-+|.||.|-.....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~~rgG 257 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGDARGG 257 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCccccc
Confidence 5699999999432211 11 111 2256788999998743 22223333333222 12356669999533222
Q ss_pred CCHHHHHHHHHhcCCeEEEee
Q 028507 132 VSIEEGEAKSRELNVMFIETS 152 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (208)
.+.......++|+.+++
T Consensus 258 ----~alsi~~~~~~PI~fig 274 (433)
T PRK10867 258 ----AALSIRAVTGKPIKFIG 274 (433)
T ss_pred ----HHHHHHHHHCcCEEEEe
Confidence 35556667788777665
No 423
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.71 E-value=0.00062 Score=55.49 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=48.7
Q ss_pred EEEEEEEcCCchhhhh-chh---h--hccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 58 VRLQLWDTAGQERFRS-LIP---S--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
+.+.|+||+|...... ... . ..-..+.+++|+|++... ....+...+....+ ..-+|.||.|-....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v~---i~giIlTKlD~~~~~- 255 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERLG---LTGVVLTKLDGDARG- 255 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhCC---CCEEEEeCccCcccc-
Confidence 5699999999432211 111 1 123578889999987432 33333333433221 235557999953322
Q ss_pred CCHHHHHHHHHhcCCeEEEeec
Q 028507 132 VSIEEGEAKSRELNVMFIETSA 153 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~sa 153 (208)
-.+...+...++|+.+++.
T Consensus 256 ---G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 ---GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 2356666777888777653
No 424
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.69 E-value=0.00018 Score=49.48 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=46.3
Q ss_pred EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 028507 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~ 127 (208)
+.+.++|+|+.. .......+..+|.++++.+.+ +.++..+...++.+.... ...++.+|+|+.+..
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 679999999743 333456788999999999987 455666566666665433 345677888999743
No 425
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.68 E-value=0.00033 Score=53.61 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=74.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc----C-----CCCCCC------------ccceeeEEEEEE---------E-CCEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK----F-----DNTYQA------------TIGIDFLSKTMY---------L-EDRTV 58 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~----~-----~~~~~~------------~~~~~~~~~~~~---------~-~~~~~ 58 (208)
-+++++|++|+||||++..+...- . ...... ..+.+....... . ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 689999999999999998775321 1 000000 011111110000 0 01135
Q ss_pred EEEEEEcCCchhhhh-c---hhhh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC
Q 028507 59 RLQLWDTAGQERFRS-L---IPSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~ 132 (208)
.+.|+||+|...... . +..+ ....+-.++|+|++.. ...+..++..+.. . .+--+|+||.|...
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-~---~~~~~I~TKlDet~---- 225 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-I---HIDGIVFTKFDETA---- 225 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-C---CCCEEEEEeecCCC----
Confidence 799999999553211 1 1111 1245678999998722 2333333343332 1 22356669999644
Q ss_pred CHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 133 SIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
..-.+...+...+.|+.+++ +|+++.
T Consensus 226 ~~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 226 SSGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 23455666777788877776 565544
No 426
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.65 E-value=0.0041 Score=43.88 Aligned_cols=142 Identities=9% Similarity=0.067 Sum_probs=98.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
+....-.|++||..+.++..|..++...... +. ++++.- .....-.. ....-..+|.
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~~-----------~~---------l~Vh~a--~sLPLp~e-~~~lRprIDl 67 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDKE-----------FK---------LKVHLA--KSLPLPSE-NNNLRPRIDL 67 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhccc-----------ee---------EEEEEe--ccCCCccc-ccCCCceeEE
Confidence 3445678999999999999999988842210 01 111111 11010000 1112357899
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
++|++|.....++..++.-+..+...+-. -.++++.+-....+...+...++..++..+.++++...-...++...+-+
T Consensus 68 IVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAq 146 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQ 146 (176)
T ss_pred EEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHH
Confidence 99999999988988888877777544422 34677777777767678889999999999999999998888888777777
Q ss_pred HHHHHc
Q 028507 165 KIAAAL 170 (208)
Q Consensus 165 ~l~~~~ 170 (208)
.|.+++
T Consensus 147 RLL~~l 152 (176)
T PF11111_consen 147 RLLRML 152 (176)
T ss_pred HHHHHH
Confidence 776655
No 427
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.64 E-value=0.00046 Score=47.13 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
.-.++++|++|+|||+|++.+...-.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34689999999999999999886543
No 428
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.64 E-value=5.8e-05 Score=57.73 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=37.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCC------CCCCCccceeeEEEE-EEECCEEEEEEEEEcCCc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD------NTYQATIGIDFLSKT-MYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~G~ 68 (208)
..++++.|+|-||+|||+|+|++...... ....+.. +..... +.+... -.+.++||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGV--T~~V~~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGV--TRRVSERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCc--eeeehhheEeccC-CceEEecCCCc
Confidence 45799999999999999999988744331 1222332 222222 333322 24889999993
No 429
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.61 E-value=0.00052 Score=44.55 Aligned_cols=82 Identities=11% Similarity=0.131 Sum_probs=49.5
Q ss_pred EEEEc-CCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 12 LVFLG-DQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 12 i~vvG-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
|++.| ..|+||||+...+...--. ...+.. .+..+.. +.+.++|+|+.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl-------~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVL-------LIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEE-------EEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEecc
Confidence 56776 4589999997765422111 111111 1111111 67999999985432 23366788999999998
Q ss_pred CCChhhHHHHHHHHH
Q 028507 91 VASRQSFLNTSKWID 105 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~ 105 (208)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 86 456666666655
No 430
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.57 E-value=7.7e-05 Score=54.90 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=40.8
Q ss_pred EEEEEEEcCCchhhhh-------chhhhccCCcEEEEEEeC------CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 028507 58 VRLQLWDTAGQERFRS-------LIPSYIRDSSVAVVVYDV------ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~-------~~~~~~~~~d~~i~v~d~------~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 124 (208)
..+.++|+||+-++.. ..+ .+..-+.-+.++.. ++|.. .+...+..+..-.....|-+=|..|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~-~Lek~~~rl~~V~LiDs~ycs~p~~--~iS~lL~sl~tMl~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFR-KLEKLDYRLVAVNLIDSHYCSDPSK--FISSLLVSLATMLHMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHH-HHHHcCceEEEEEeeeceeeCChHH--HHHHHHHHHHHHHhhcccchhhhhHh
Confidence 4589999999765322 222 23345544444433 34543 34445555555555668888899999
Q ss_pred CCCc
Q 028507 125 DLVE 128 (208)
Q Consensus 125 D~~~ 128 (208)
|+..
T Consensus 174 Dl~~ 177 (290)
T KOG1533|consen 174 DLLK 177 (290)
T ss_pred HHHH
Confidence 9864
No 431
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.56 E-value=0.0018 Score=51.45 Aligned_cols=98 Identities=18% Similarity=0.223 Sum_probs=52.6
Q ss_pred EEEEEEEcCCchhhhhchhhh-------ccCCcEEEEEEeCCChhh--H-------H-------------HHH-HHHHHH
Q 028507 58 VRLQLWDTAGQERFRSLIPSY-------IRDSSVAVVVYDVASRQS--F-------L-------------NTS-KWIDEV 107 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~-------~~~~d~~i~v~d~~~~~s--~-------~-------------~~~-~~~~~i 107 (208)
....++++.|......+...+ .-..+++|.|+|+.+-.. + . .+. .+...+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi 172 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQL 172 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHH
Confidence 457889999966654443332 125678999999963211 0 0 001 112233
Q ss_pred HHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-cC-C-eEEEeecCCCCChHHHHH
Q 028507 108 RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LN-V-MFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 108 ~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~-~~~~~sa~~~~~i~~~~~ 164 (208)
.. +. +|++||+|+.++.++ +..+...+. ++ . +++++. ........+|.
T Consensus 173 ~~-AD-----~IvlnK~Dl~~~~~l--~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 173 AC-AD-----LVILNKADLLDAAGL--ARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred Hh-CC-----EEEEeccccCCHHHH--HHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 22 11 777899999775543 344444444 33 2 566654 33345555554
No 432
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.56 E-value=0.0006 Score=52.50 Aligned_cols=104 Identities=17% Similarity=0.243 Sum_probs=62.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh----------------
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------------- 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------------- 70 (208)
.+-.+++|+|++|.|||+++++|......... ... ..+.+..+.+|....
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d-~~~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD-EDA-------------ERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCC-CCC-------------ccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 34467999999999999999999965532221 110 113455555554221
Q ss_pred --------hhhchhhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC-CCCcEEEEEeCC
Q 028507 71 --------FRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124 (208)
Q Consensus 71 --------~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~-~~~piivv~nK~ 124 (208)
........++...+=++++|--.. .+......+++.++.... ..+|++.+|++-
T Consensus 125 ~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 125 RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 112223456778888999987531 234445555555554433 568899888654
No 433
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.55 E-value=0.00087 Score=42.49 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=46.6
Q ss_pred EEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc-hhhhccCCcEEEEEEe
Q 028507 12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-IPSYIRDSSVAVVVYD 90 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 90 (208)
+++.|..|+||||+...+...-.... .... .++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~---------~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KRVL---------LID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CeEE---------EEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 67889999999999887764321111 1111 111 5899999975432221 1455678899999998
Q ss_pred CCChhhHHHHHH
Q 028507 91 VASRQSFLNTSK 102 (208)
Q Consensus 91 ~~~~~s~~~~~~ 102 (208)
.+.. +......
T Consensus 68 ~~~~-~~~~~~~ 78 (99)
T cd01983 68 PEAL-AVLGARR 78 (99)
T ss_pred Cchh-hHHHHHH
Confidence 8743 3344333
No 434
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.53 E-value=8.2e-05 Score=58.68 Aligned_cols=58 Identities=22% Similarity=0.348 Sum_probs=41.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
.+.+++.|+|-|++||||+||+|...+.... .+..|++.....+..+. .+.|+|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence 3568999999999999999999997775322 23333444455555543 5899999994
No 435
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.49 E-value=9.8e-05 Score=49.35 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 436
>PRK07261 topology modulation protein; Provisional
Probab=97.47 E-value=0.0001 Score=52.67 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
++|+|+|++|+|||||...|..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 437
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00011 Score=52.65 Aligned_cols=23 Identities=17% Similarity=0.517 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
++|+|+|+||+||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998865
No 438
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.44 E-value=0.0012 Score=43.22 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=43.6
Q ss_pred EEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 028507 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNK 123 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~piivv~nK 123 (208)
.+.|+|+|+.... .....+..+|.++++.+.+ +.++..+..+++.+.....+ ...+.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 5899999975432 2345678899999999876 45677777777777665433 3556677775
No 439
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.43 E-value=0.00016 Score=42.10 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
..+|.|+.|+|||||+.++..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999987643
No 440
>PRK08118 topology modulation protein; Reviewed
Probab=97.41 E-value=0.00013 Score=51.83 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.+|+|+|++|+|||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988743
No 441
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.39 E-value=0.00014 Score=50.10 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHhhc
Q 028507 12 LVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~ 31 (208)
|+++|+||+|||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999873
No 442
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.38 E-value=0.00014 Score=53.80 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|||||||++.+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999877544
No 443
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0008 Score=53.21 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=28.3
Q ss_pred EEEEEEEEEcCCchhh-hhchhh-----hccCCcEEEEEEeCCChhhHHHH
Q 028507 56 RTVRLQLWDTAGQERF-RSLIPS-----YIRDSSVAVVVYDVASRQSFLNT 100 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~-~~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~ 100 (208)
..+.+.|+||.|.... ..+... -.-+.|-+|+|.|++-....+..
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Confidence 3467999999994321 122221 13468999999999865544443
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00025 Score=51.74 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
=.++|+||+|+|||||++.+-+-..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcC
Confidence 3578999999999999998876554
No 445
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.30 E-value=0.0032 Score=45.21 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
.=.++|+|+.|+|||||++.+.+...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34688999999999999999887543
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.00028 Score=52.58 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999887543
No 447
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.27 E-value=0.00016 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999855
No 448
>PRK14530 adenylate kinase; Provisional
Probab=97.24 E-value=0.0003 Score=52.17 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHhh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~ 30 (208)
..+|+|+|+||+||||+.+.|.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999886
No 449
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.23 E-value=0.00043 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
+..-|+|+|++|+|||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4566788899999999999999744
No 450
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.23 E-value=0.00035 Score=41.89 Aligned_cols=21 Identities=14% Similarity=0.419 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999988754
No 451
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.23 E-value=0.00013 Score=57.68 Aligned_cols=85 Identities=22% Similarity=0.146 Sum_probs=51.9
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCC-CCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh--hchhhhcc
Q 028507 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--SLIPSYIR 80 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--~~~~~~~~ 80 (208)
+++-+.+.|.++|-|++|||++||+|...++... ..+..+ .....+.. -.++-++|+||.--.. +.....+
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET--KVWQYItL---mkrIfLIDcPGvVyps~dset~ivL- 375 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET--KVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVL- 375 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc--hHHHHHHH---HhceeEecCCCccCCCCCchHHHHh-
Confidence 4566789999999999999999999998877443 222211 10000000 1258899999943221 1122222
Q ss_pred CCcEEEEEEeCCChhh
Q 028507 81 DSSVAVVVYDVASRQS 96 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s 96 (208)
-++|=|=.+.+|+.
T Consensus 376 --kGvVRVenv~~pe~ 389 (572)
T KOG2423|consen 376 --KGVVRVENVKNPED 389 (572)
T ss_pred --hceeeeeecCCHHH
Confidence 36677777777653
No 452
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.18 E-value=0.0019 Score=47.23 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-|+|+|++|+||||+++.+....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999887544
No 453
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.18 E-value=0.0019 Score=43.91 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
--|++.|+.|+|||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468899999999999999988653
No 454
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.17 E-value=0.00036 Score=47.68 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 368999999999999999888654
No 455
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00025 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=21.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
..-++|.||+|+|||||++.|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4567888999999999999998665
No 456
>PRK01889 GTPase RsgA; Reviewed
Probab=97.15 E-value=0.00047 Score=55.05 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=21.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-+++|+|.+|+|||||+|.|.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999998644
No 457
>PRK06217 hypothetical protein; Validated
Probab=97.14 E-value=0.00041 Score=50.09 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.+|+|+|.+|+|||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988743
No 458
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.13 E-value=0.00042 Score=45.20 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=18.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~ 30 (208)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999875
No 459
>PRK03839 putative kinase; Provisional
Probab=97.12 E-value=0.00043 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
++|+|+|+||+||||+.+.|...
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988643
No 460
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.11 E-value=0.00045 Score=49.98 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999654
No 461
>PRK04195 replication factor C large subunit; Provisional
Probab=97.11 E-value=0.011 Score=49.34 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-.++|.|++|+||||+++.+....
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458889999999999999987543
No 462
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.09 E-value=0.00049 Score=47.24 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999854
No 463
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.08 E-value=0.00054 Score=46.36 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFD 35 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~ 35 (208)
-.++|+|++|+||||++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999998865543
No 464
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.07 E-value=0.00051 Score=48.93 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=20.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.=.++|+|++|+|||||+|-+.+=.
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhcc
Confidence 3468999999999999999877543
No 465
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.04 E-value=0.00053 Score=49.23 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.++|+|++|+|||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988654
No 466
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.04 E-value=0.0006 Score=46.02 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999988754
No 467
>PRK08233 hypothetical protein; Provisional
Probab=97.04 E-value=0.0007 Score=48.58 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
+.+-|+|.|++|+|||||.+.|...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3467888999999999999988753
No 468
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.03 E-value=0.0006 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.|+|+|+.|+|||||+..|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988754
No 469
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.00056 Score=50.63 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 479999999999999998876
No 470
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.01 E-value=0.00085 Score=47.78 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
..-+.|+|++|+|||||+.++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999998854
No 471
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.01 E-value=0.00067 Score=48.64 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHhh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~ 30 (208)
.-.++|+|+.|+|||||++.++
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3578999999999999999886
No 472
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.00073 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHhhcCcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~~~ 34 (208)
++++||+|+|||||++.+.+-.-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999886543
No 473
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.00 E-value=0.011 Score=45.88 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHhh
Q 028507 11 KLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~ 30 (208)
.|+|.|++|+||||+++.|.
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68889999999999999984
No 474
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.00 E-value=0.00088 Score=49.39 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.+...|+|.|++|+|||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999988754
No 475
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.00 E-value=0.00062 Score=45.74 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
No 476
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.98 E-value=0.00093 Score=49.20 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
+..-|+|+|++|+|||||++.|.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999998753
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.96 E-value=0.00071 Score=48.55 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
-|+|+|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4889999999999999999864
No 478
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.95 E-value=0.04 Score=39.21 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=50.6
Q ss_pred EEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHH
Q 028507 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE 138 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~ 138 (208)
.+.|+|+|+.... .....+..+|.+|++.+.+. .++..+..+++.+... ......+|+|+.+..... ......
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL--GIKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc--CCceEEEEEeCCcccccc--hhhHHH
Confidence 5999999875432 23445688999999998864 4555555655555542 123467788999853322 122223
Q ss_pred HHHHhcCCeEE
Q 028507 139 AKSRELNVMFI 149 (208)
Q Consensus 139 ~~~~~~~~~~~ 149 (208)
.+...++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44445566554
No 479
>PRK14532 adenylate kinase; Provisional
Probab=96.94 E-value=0.00078 Score=48.77 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
++|+++|+||+||||+..+|..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 480
>PRK00625 shikimate kinase; Provisional
Probab=96.94 E-value=0.00078 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
++|+++|.+|+||||+.+.|..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 481
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.00075 Score=47.52 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~ 30 (208)
++|+|.|.||+||||+...|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 589999999999999999887
No 482
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.94 E-value=0.0094 Score=49.97 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
+++.||+|+||||.++.|...
T Consensus 48 LlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 455699999999999988743
No 483
>PRK10646 ADP-binding protein; Provisional
Probab=96.93 E-value=0.0073 Score=42.09 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
-|++-|+-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788899999999999998754
No 484
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.93 E-value=0.00075 Score=48.68 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=18.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~ 30 (208)
.-|+|+|++|+||||+.+.|.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468889999999999999887
No 485
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.92 E-value=0.0032 Score=42.18 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
-|++-|+-|+|||||++.+...
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778899999999999988754
No 486
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.90 E-value=0.00092 Score=48.40 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.-.++|+|++|+|||||++.|.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4578999999999999999988643
No 487
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.90 E-value=0.00085 Score=48.56 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.=|+|+|++|+|||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45889999999999999999864
No 488
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.89 E-value=0.00099 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.753 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.++++|+|++|+|||+|+-.|+..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 479999999999999999888754
No 489
>PRK02496 adk adenylate kinase; Provisional
Probab=96.89 E-value=0.001 Score=48.03 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
++|+|+|+||+||||+...|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 490
>PRK08727 hypothetical protein; Validated
Probab=96.88 E-value=0.012 Score=44.28 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
+.+.|++|+|||.|+..+...
T Consensus 44 l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988644
No 491
>PRK14531 adenylate kinase; Provisional
Probab=96.88 E-value=0.001 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
.+|+++|+||+||||+...|..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999988863
No 492
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.87 E-value=0.00089 Score=48.89 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
|.|.|++|+|||||.+.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988754
No 493
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.86 E-value=0.00099 Score=49.39 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 357899999999999999998754
No 494
>PRK13949 shikimate kinase; Provisional
Probab=96.86 E-value=0.001 Score=47.40 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
+|+|+|++|+||||+...|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987763
No 495
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.00091 Score=48.88 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=17.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~ 30 (208)
--.+++||+|+|||||++.|-
T Consensus 34 ~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHH
Confidence 346899999999999998775
No 496
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.85 E-value=0.0059 Score=48.49 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=22.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
..+|+|.|+.|+|||||++.|+..-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 5789999999999999999998654
No 497
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.85 E-value=0.001 Score=49.22 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 498
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.84 E-value=0.0011 Score=48.97 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999998754
No 499
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.84 E-value=0.0028 Score=47.20 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.-.++|.|++|+|||+|...+...
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988754
No 500
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.83 E-value=0.0011 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
.++|+|+|+||+||||+...|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999998753
Done!