Query 028507
Match_columns 208
No_of_seqs 131 out of 1747
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 20:59:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.8E-45 9.5E-50 270.3 20.3 199 6-208 10-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 8.7E-38 3E-42 229.1 22.1 173 1-174 1-173 (206)
3 1vg8_A RAS-related protein RAB 100.0 1.2E-36 4.2E-41 222.9 18.7 172 1-174 1-177 (207)
4 3cpj_B GTP-binding protein YPT 100.0 2.6E-35 8.8E-40 218.6 21.2 170 7-176 11-180 (223)
5 2efe_B Small GTP-binding prote 100.0 2.5E-34 8.5E-39 206.2 23.3 170 5-174 8-177 (181)
6 2bov_A RAla, RAS-related prote 100.0 5.7E-35 2E-39 213.8 20.3 167 6-173 11-178 (206)
7 1r2q_A RAS-related protein RAB 100.0 2.6E-34 8.8E-39 203.9 22.4 166 7-172 4-169 (170)
8 1ek0_A Protein (GTP-binding pr 100.0 3E-34 1E-38 203.5 22.5 166 7-172 1-169 (170)
9 1z0f_A RAB14, member RAS oncog 100.0 2.9E-34 9.8E-39 205.4 22.5 167 5-171 11-177 (179)
10 2a5j_A RAS-related protein RAB 100.0 1.4E-34 4.9E-39 209.6 21.0 168 5-172 17-184 (191)
11 2bme_A RAB4A, RAS-related prot 100.0 2.6E-34 8.8E-39 207.1 21.4 168 6-173 7-174 (186)
12 1z0j_A RAB-22, RAS-related pro 100.0 8.2E-34 2.8E-38 201.4 23.5 167 6-172 3-169 (170)
13 2ew1_A RAS-related protein RAB 100.0 3.7E-34 1.3E-38 209.2 22.1 166 7-172 24-189 (201)
14 2fu5_C RAS-related protein RAB 100.0 4.1E-35 1.4E-39 210.9 16.7 167 7-173 6-172 (183)
15 2gf9_A RAS-related protein RAB 100.0 4.6E-34 1.6E-38 206.6 22.0 166 7-172 20-185 (189)
16 1z08_A RAS-related protein RAB 100.0 2.1E-34 7.1E-39 204.6 19.8 166 7-172 4-169 (170)
17 2y8e_A RAB-protein 6, GH09086P 100.0 4.5E-34 1.5E-38 204.4 21.7 166 7-172 12-177 (179)
18 2hup_A RAS-related protein RAB 100.0 2E-34 7E-39 210.5 19.8 166 7-172 27-193 (201)
19 3tkl_A RAS-related protein RAB 100.0 6.6E-34 2.2E-38 206.6 22.4 167 7-173 14-180 (196)
20 2g6b_A RAS-related protein RAB 100.0 7.4E-34 2.5E-38 203.6 22.2 169 6-174 7-176 (180)
21 3t5g_A GTP-binding protein RHE 100.0 3.4E-34 1.1E-38 205.7 20.1 168 7-175 4-172 (181)
22 2fn4_A P23, RAS-related protei 100.0 4.7E-34 1.6E-38 204.6 20.8 169 5-174 5-174 (181)
23 2fg5_A RAB-22B, RAS-related pr 100.0 7.5E-34 2.6E-38 206.0 21.3 167 7-173 21-187 (192)
24 3bc1_A RAS-related protein RAB 100.0 5.3E-34 1.8E-38 206.5 20.3 172 1-172 3-185 (195)
25 3kkq_A RAS-related protein M-R 100.0 1.1E-33 3.7E-38 203.4 21.7 167 4-171 13-181 (183)
26 3tw8_B RAS-related protein RAB 100.0 6.3E-34 2.2E-38 204.0 20.3 168 7-175 7-174 (181)
27 2il1_A RAB12; G-protein, GDP, 100.0 5E-34 1.7E-38 207.0 19.6 167 5-171 22-189 (192)
28 1zbd_A Rabphilin-3A; G protein 100.0 1.3E-33 4.3E-38 206.4 21.7 166 7-172 6-171 (203)
29 1z06_A RAS-related protein RAB 100.0 1.1E-33 3.9E-38 204.5 21.2 166 6-171 17-187 (189)
30 2hxs_A RAB-26, RAS-related pro 100.0 5.6E-34 1.9E-38 203.9 19.3 169 6-174 3-175 (178)
31 2o52_A RAS-related protein RAB 100.0 5.7E-34 1.9E-38 208.0 19.3 167 7-173 23-189 (200)
32 2oil_A CATX-8, RAS-related pro 100.0 1.2E-33 4E-38 205.0 20.9 166 7-172 23-188 (193)
33 3cbq_A GTP-binding protein REM 100.0 7.5E-34 2.6E-38 206.6 19.7 168 5-172 19-188 (195)
34 1z2a_A RAS-related protein RAB 100.0 1.7E-33 5.7E-38 199.4 20.4 164 7-171 3-166 (168)
35 1g16_A RAS-related protein SEC 100.0 1.2E-33 4.2E-38 200.5 18.8 164 8-172 2-165 (170)
36 2j0v_A RAC-like GTP-binding pr 100.0 4.5E-34 1.5E-38 210.2 17.1 172 3-176 3-184 (212)
37 1c1y_A RAS-related protein RAP 100.0 2.8E-33 9.6E-38 198.1 20.5 164 7-171 1-166 (167)
38 3c5c_A RAS-like protein 12; GD 100.0 1.6E-33 5.3E-38 203.6 19.3 164 6-171 18-185 (187)
39 1u8z_A RAS-related protein RAL 100.0 4.2E-33 1.4E-37 197.1 21.0 165 6-171 1-166 (168)
40 3dz8_A RAS-related protein RAB 100.0 2.5E-34 8.5E-39 208.3 14.9 166 7-172 21-186 (191)
41 1wms_A RAB-9, RAB9, RAS-relate 100.0 8E-33 2.7E-37 197.7 22.4 165 7-172 5-174 (177)
42 2p5s_A RAS and EF-hand domain 100.0 1.8E-33 6.2E-38 205.1 19.3 166 7-172 26-197 (199)
43 2gf0_A GTP-binding protein DI- 100.0 4.7E-33 1.6E-37 202.5 21.4 166 7-174 6-173 (199)
44 3oes_A GTPase rhebl1; small GT 100.0 8.6E-34 2.9E-38 207.1 16.9 169 6-175 21-190 (201)
45 4dsu_A GTPase KRAS, isoform 2B 100.0 4.3E-33 1.5E-37 201.0 20.2 166 7-174 2-168 (189)
46 3ihw_A Centg3; RAS, centaurin, 100.0 5.5E-33 1.9E-37 200.3 20.7 163 4-173 15-181 (184)
47 3q3j_B RHO-related GTP-binding 100.0 2.6E-33 8.7E-38 206.6 19.3 169 5-175 23-206 (214)
48 4djt_A GTP-binding nuclear pro 100.0 2.9E-33 9.9E-38 206.7 19.6 186 7-192 9-195 (218)
49 1x3s_A RAS-related protein RAB 100.0 1.1E-32 3.7E-37 200.0 21.7 168 7-175 13-181 (195)
50 2f7s_A C25KG, RAS-related prot 100.0 7.7E-34 2.6E-38 209.6 16.0 167 7-173 23-200 (217)
51 2nzj_A GTP-binding protein REM 100.0 5.4E-33 1.9E-37 198.1 19.2 165 7-172 2-169 (175)
52 2a9k_A RAS-related protein RAL 100.0 7.2E-33 2.5E-37 199.4 19.9 167 5-172 14-181 (187)
53 1kao_A RAP2A; GTP-binding prot 100.0 6E-33 2.1E-37 196.2 19.2 164 7-171 1-165 (167)
54 3q85_A GTP-binding protein REM 100.0 5.9E-33 2E-37 196.9 19.1 163 9-171 2-166 (169)
55 3cph_A RAS-related protein SEC 100.0 1.3E-32 4.3E-37 202.4 20.7 166 7-173 18-183 (213)
56 2atx_A Small GTP binding prote 100.0 1.3E-32 4.4E-37 199.7 20.1 169 1-171 10-192 (194)
57 2atv_A RERG, RAS-like estrogen 100.0 1.7E-32 5.8E-37 199.4 20.6 167 4-172 23-191 (196)
58 3clv_A RAB5 protein, putative; 100.0 4.5E-32 1.5E-36 197.9 22.7 163 6-171 4-203 (208)
59 3reg_A RHO-like small GTPase; 100.0 3.1E-32 1E-36 197.7 21.6 166 7-174 21-190 (194)
60 2iwr_A Centaurin gamma 1; ANK 100.0 2.7E-32 9.3E-37 195.3 20.7 162 5-173 3-170 (178)
61 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.3E-32 1.1E-36 195.9 21.1 167 6-174 2-182 (186)
62 1ky3_A GTP-binding protein YPT 100.0 7.6E-33 2.6E-37 198.5 17.5 171 1-172 1-178 (182)
63 3q72_A GTP-binding protein RAD 100.0 2E-32 6.7E-37 193.7 18.7 161 9-171 2-163 (166)
64 2g3y_A GTP-binding protein GEM 100.0 2.4E-32 8.4E-37 200.6 19.7 164 7-171 35-202 (211)
65 2erx_A GTP-binding protein DI- 100.0 4.5E-32 1.5E-36 192.6 20.1 165 8-173 2-168 (172)
66 3con_A GTPase NRAS; structural 100.0 7.1E-32 2.4E-36 195.1 21.1 167 5-173 17-184 (190)
67 2yc2_C IFT27, small RAB-relate 100.0 5.5E-33 1.9E-37 203.4 14.7 167 7-173 18-193 (208)
68 2q3h_A RAS homolog gene family 100.0 5.4E-32 1.8E-36 197.4 19.7 166 6-173 17-196 (201)
69 2gco_A H9, RHO-related GTP-bin 100.0 1.7E-31 5.8E-36 195.0 21.1 163 7-171 23-199 (201)
70 1m7b_A RND3/RHOE small GTP-bin 100.0 8E-32 2.7E-36 194.0 18.8 164 6-171 4-182 (184)
71 2ce2_X GTPase HRAS; signaling 100.0 3.2E-31 1.1E-35 187.0 21.4 163 7-171 1-164 (166)
72 1gwn_A RHO-related GTP-binding 100.0 8.8E-32 3E-36 197.2 18.7 163 7-171 26-203 (205)
73 3gj0_A GTP-binding nuclear pro 100.0 4.8E-32 1.6E-36 200.6 17.0 171 3-176 9-179 (221)
74 3l0i_B RAS-related protein RAB 100.0 4E-34 1.4E-38 208.6 5.6 166 7-172 31-196 (199)
75 2j1l_A RHO-related GTP-binding 100.0 1.2E-31 4E-36 197.7 18.7 165 7-173 32-210 (214)
76 2fv8_A H6, RHO-related GTP-bin 100.0 3.9E-31 1.3E-35 193.9 20.9 165 6-172 22-200 (207)
77 3bwd_D RAC-like GTP-binding pr 100.0 1.6E-32 5.6E-37 196.9 12.8 166 4-171 3-180 (182)
78 4gzl_A RAS-related C3 botulinu 100.0 2.7E-31 9.4E-36 194.4 18.8 163 6-170 27-203 (204)
79 2cjw_A GTP-binding protein GEM 100.0 1.3E-30 4.5E-35 189.0 20.7 164 7-171 4-171 (192)
80 4bas_A ADP-ribosylation factor 100.0 2.4E-31 8.1E-36 193.5 15.7 164 5-174 13-191 (199)
81 3t1o_A Gliding protein MGLA; G 100.0 4.6E-32 1.6E-36 196.9 11.3 165 5-173 10-193 (198)
82 2h57_A ADP-ribosylation factor 100.0 7E-30 2.4E-34 184.7 19.9 162 6-173 18-188 (190)
83 2f9l_A RAB11B, member RAS onco 100.0 3.5E-29 1.2E-33 182.4 22.5 165 8-172 4-168 (199)
84 1zd9_A ADP-ribosylation factor 100.0 1.7E-30 5.9E-35 187.7 15.2 161 7-173 20-186 (188)
85 1oix_A RAS-related protein RAB 100.0 4.9E-29 1.7E-33 180.6 21.9 164 7-170 27-190 (191)
86 1upt_A ARL1, ADP-ribosylation 100.0 2.4E-30 8.1E-35 183.7 14.7 159 8-173 6-170 (171)
87 1r8s_A ADP-ribosylation factor 100.0 1.4E-30 4.8E-35 183.8 13.3 156 10-172 1-162 (164)
88 1f6b_A SAR1; gtpases, N-termin 100.0 9.9E-30 3.4E-34 185.2 17.6 157 7-170 23-197 (198)
89 1m2o_B GTP-binding protein SAR 100.0 2.5E-29 8.6E-34 182.0 19.4 156 7-169 21-189 (190)
90 1ksh_A ARF-like protein 2; sma 100.0 4.3E-29 1.5E-33 179.8 20.2 159 7-172 16-180 (186)
91 1zj6_A ADP-ribosylation factor 100.0 8.5E-30 2.9E-34 183.8 16.4 164 7-177 14-183 (187)
92 2b6h_A ADP-ribosylation factor 100.0 2.5E-30 8.7E-35 187.5 12.9 160 6-172 26-191 (192)
93 2h17_A ADP-ribosylation factor 100.0 1.3E-29 4.4E-34 182.0 16.2 158 5-169 17-180 (181)
94 2zej_A Dardarin, leucine-rich 100.0 2.8E-30 9.7E-35 186.0 11.4 166 9-175 2-181 (184)
95 1fzq_A ADP-ribosylation factor 100.0 3.1E-29 1.1E-33 180.1 15.9 159 7-172 14-178 (181)
96 2x77_A ADP-ribosylation factor 100.0 6E-30 2.1E-34 184.8 11.2 160 7-173 20-185 (189)
97 2wkq_A NPH1-1, RAS-related C3 100.0 2.5E-28 8.5E-33 190.8 20.5 162 8-171 154-329 (332)
98 3llu_A RAS-related GTP-binding 100.0 2E-29 6.9E-34 183.3 12.7 163 5-170 16-195 (196)
99 1moz_A ARL1, ADP-ribosylation 100.0 4.9E-29 1.7E-33 178.9 13.8 159 7-172 16-180 (183)
100 2wji_A Ferrous iron transport 100.0 1.1E-28 3.7E-33 174.7 15.0 155 7-170 1-163 (165)
101 3th5_A RAS-related C3 botulinu 99.9 2.3E-31 7.9E-36 194.6 0.0 162 7-170 28-203 (204)
102 3c5h_A Glucocorticoid receptor 100.0 2.6E-29 9E-34 189.8 8.1 165 4-170 14-253 (255)
103 2qu8_A Putative nucleolar GTP- 100.0 1.8E-27 6.2E-32 176.9 17.2 163 7-173 27-206 (228)
104 2lkc_A Translation initiation 100.0 9.7E-28 3.3E-32 171.4 14.5 157 5-173 4-172 (178)
105 2fh5_B SR-beta, signal recogni 100.0 2.9E-27 1E-31 173.9 17.0 161 7-170 5-214 (214)
106 3r7w_A Gtpase1, GTP-binding pr 100.0 4E-27 1.4E-31 182.3 16.4 161 8-172 2-181 (307)
107 3o47_A ADP-ribosylation factor 99.9 1.8E-27 6.1E-32 185.8 13.6 159 7-172 163-327 (329)
108 2wjg_A FEOB, ferrous iron tran 99.9 2.2E-27 7.7E-32 171.0 12.8 161 5-174 3-171 (188)
109 3lvq_E ARF-GAP with SH3 domain 99.9 2.6E-27 8.8E-32 194.6 14.6 166 7-179 320-491 (497)
110 1svi_A GTP-binding protein YSX 99.9 4.6E-27 1.6E-31 170.3 13.2 159 6-171 20-194 (195)
111 2gj8_A MNME, tRNA modification 99.9 5E-27 1.7E-31 167.2 11.0 155 8-172 3-166 (172)
112 2cxx_A Probable GTP-binding pr 99.9 4.6E-27 1.6E-31 169.5 10.5 156 10-174 2-186 (190)
113 2dyk_A GTP-binding protein; GT 99.9 1.5E-26 5.3E-31 162.4 12.7 151 10-171 2-161 (161)
114 3iev_A GTP-binding protein ERA 99.9 1.1E-25 3.8E-30 174.2 18.2 169 4-177 5-187 (308)
115 3a1s_A Iron(II) transport prot 99.9 1.7E-26 5.9E-31 174.4 13.0 156 7-171 3-166 (258)
116 3r7w_B Gtpase2, GTP-binding pr 99.9 4.5E-27 1.5E-31 180.9 8.6 155 11-172 1-174 (331)
117 3dpu_A RAB family protein; roc 99.9 5.8E-27 2E-31 193.9 9.4 167 5-175 37-211 (535)
118 3i8s_A Ferrous iron transport 99.9 1.1E-26 3.7E-31 177.1 8.8 158 7-173 1-170 (274)
119 3iby_A Ferrous iron transport 99.9 2.4E-26 8E-31 173.4 9.5 151 10-169 2-164 (256)
120 3b1v_A Ferrous iron uptake tra 99.9 2.6E-26 8.9E-31 174.5 9.8 154 9-172 3-164 (272)
121 3pqc_A Probable GTP-binding pr 99.9 3.5E-25 1.2E-29 160.2 14.9 159 4-172 18-194 (195)
122 3k53_A Ferrous iron transport 99.9 1.8E-25 6.3E-30 170.2 12.3 159 7-173 1-167 (271)
123 1nrj_B SR-beta, signal recogni 99.9 3.7E-26 1.3E-30 168.5 5.8 148 2-158 5-170 (218)
124 1wf3_A GTP-binding protein; GT 99.9 1.7E-24 5.7E-29 166.9 14.9 163 1-174 1-175 (301)
125 4dhe_A Probable GTP-binding pr 99.9 2.8E-25 9.4E-30 164.3 9.9 163 5-173 25-212 (223)
126 2hjg_A GTP-binding protein ENG 99.9 8.7E-26 3E-30 182.6 7.5 173 7-185 173-362 (436)
127 4dcu_A GTP-binding protein ENG 99.9 5.1E-25 1.8E-29 179.0 8.1 172 7-184 193-381 (456)
128 3qq5_A Small GTP-binding prote 99.9 1.1E-24 3.8E-29 174.3 9.1 160 5-173 30-197 (423)
129 3gee_A MNME, tRNA modification 99.9 5.1E-24 1.7E-28 173.1 12.8 156 9-171 233-397 (476)
130 2e87_A Hypothetical protein PH 99.9 8.3E-24 2.8E-28 166.9 13.6 162 7-173 165-337 (357)
131 1lnz_A SPO0B-associated GTP-bi 99.9 6.3E-24 2.2E-28 165.9 11.8 160 11-175 160-333 (342)
132 1s0u_A EIF-2-gamma, translatio 99.9 3.4E-22 1.2E-26 160.3 18.5 165 3-173 2-199 (408)
133 1xzp_A Probable tRNA modificat 99.9 6E-23 2E-27 166.9 12.9 152 9-171 243-404 (482)
134 1wb1_A Translation elongation 99.9 9.1E-23 3.1E-27 166.4 14.0 157 6-171 16-188 (482)
135 3sjy_A Translation initiation 99.9 7.1E-22 2.4E-26 158.2 18.9 167 5-173 4-193 (403)
136 1mky_A Probable GTP-binding pr 99.9 1.6E-22 5.6E-27 163.6 13.6 153 10-172 2-166 (439)
137 3lxx_A GTPase IMAP family memb 99.9 1.4E-21 4.9E-26 146.0 16.7 162 7-172 27-214 (239)
138 3j2k_7 ERF3, eukaryotic polype 99.9 3.5E-22 1.2E-26 161.4 14.2 157 6-164 14-217 (439)
139 1ega_A Protein (GTP-binding pr 99.9 9.1E-22 3.1E-26 151.7 15.5 161 6-173 5-176 (301)
140 3cb4_D GTP-binding protein LEP 99.9 5.8E-22 2E-26 164.6 14.9 160 8-173 3-183 (599)
141 1kk1_A EIF2gamma; initiation o 99.9 1.2E-21 4E-26 157.3 16.0 161 7-173 8-201 (410)
142 2hjg_A GTP-binding protein ENG 99.9 1E-22 3.5E-27 164.6 9.6 154 9-173 3-166 (436)
143 3geh_A MNME, tRNA modification 99.9 9.9E-23 3.4E-27 164.9 9.1 153 9-173 224-385 (462)
144 2xtp_A GTPase IMAP family memb 99.9 4.5E-22 1.5E-26 150.5 12.2 163 6-173 19-209 (260)
145 2ywe_A GTP-binding protein LEP 99.9 1.5E-21 5E-26 162.0 15.7 160 8-173 5-185 (600)
146 2qtf_A Protein HFLX, GTP-bindi 99.9 2.2E-21 7.6E-26 152.9 15.9 160 9-171 178-353 (364)
147 1mky_A Probable GTP-binding pr 99.9 4.4E-22 1.5E-26 161.0 12.2 178 8-191 179-374 (439)
148 3t5d_A Septin-7; GTP-binding p 99.9 1.9E-22 6.6E-27 153.7 8.7 163 6-172 5-204 (274)
149 3lxw_A GTPase IMAP family memb 99.9 5.2E-22 1.8E-26 149.1 10.6 164 6-173 18-209 (247)
150 3izy_P Translation initiation 99.9 1E-23 3.5E-28 172.8 0.5 161 8-173 3-169 (537)
151 3p26_A Elongation factor 1 alp 99.9 1.1E-21 3.8E-26 160.4 11.8 152 7-161 31-227 (483)
152 4dcu_A GTP-binding protein ENG 99.9 3.5E-22 1.2E-26 162.4 8.3 157 6-173 20-186 (456)
153 2ged_A SR-beta, signal recogni 99.9 8.4E-22 2.9E-26 142.4 8.4 116 7-131 46-173 (193)
154 1jny_A EF-1-alpha, elongation 99.9 3.8E-22 1.3E-26 161.2 5.7 154 7-163 4-204 (435)
155 1d2e_A Elongation factor TU (E 99.9 3.4E-21 1.2E-25 153.9 11.1 161 8-172 2-195 (397)
156 1g7s_A Translation initiation 99.9 7.2E-21 2.4E-25 158.2 13.3 158 7-171 3-217 (594)
157 1zun_B Sulfate adenylate trans 99.8 1.1E-20 3.7E-25 152.7 13.4 151 7-162 22-214 (434)
158 2qag_A Septin-2, protein NEDD5 99.8 4E-22 1.4E-26 157.2 4.8 157 8-170 36-231 (361)
159 3tr5_A RF-3, peptide chain rel 99.8 8.7E-21 3E-25 155.9 12.4 115 8-128 12-148 (528)
160 2elf_A Protein translation elo 99.8 4E-21 1.4E-25 151.8 9.8 146 11-172 23-180 (370)
161 2c78_A Elongation factor TU-A; 99.8 2.6E-21 8.7E-26 155.1 8.4 162 7-172 9-212 (405)
162 1cip_A Protein (guanine nucleo 99.8 2.2E-20 7.4E-25 146.4 13.0 122 49-172 186-344 (353)
163 3ohm_A Guanine nucleotide-bind 99.8 4.5E-20 1.6E-24 142.7 14.2 124 48-173 159-319 (327)
164 1zo1_I IF2, translation initia 99.8 2.4E-22 8.4E-27 163.4 1.2 155 7-170 2-165 (501)
165 3izq_1 HBS1P, elongation facto 99.8 4.6E-21 1.6E-25 160.1 8.8 153 7-162 165-362 (611)
166 1r5b_A Eukaryotic peptide chai 99.8 1.4E-21 4.6E-26 159.1 4.7 155 7-163 41-243 (467)
167 1f60_A Elongation factor EEF1A 99.8 5.6E-21 1.9E-25 155.1 6.0 150 7-161 5-201 (458)
168 3def_A T7I23.11 protein; chlor 99.8 2E-19 6.8E-24 136.1 14.2 127 6-135 33-172 (262)
169 2xtz_A Guanine nucleotide-bind 99.8 8.6E-20 3E-24 143.0 11.8 116 56-171 181-344 (354)
170 3avx_A Elongation factor TS, e 99.8 4E-20 1.4E-24 160.8 10.2 162 7-172 294-486 (1289)
171 3mca_A HBS1, elongation factor 99.8 3E-21 1E-25 160.8 2.9 161 7-171 175-396 (592)
172 1pui_A ENGB, probable GTP-bind 99.8 1.4E-19 4.8E-24 132.4 11.2 157 7-172 24-199 (210)
173 2aka_B Dynamin-1; fusion prote 99.8 3.7E-20 1.2E-24 142.6 8.3 160 7-170 24-251 (299)
174 4fid_A G protein alpha subunit 99.8 1.5E-19 5.2E-24 140.2 10.4 116 57-172 160-328 (340)
175 2dy1_A Elongation factor G; tr 99.8 6.7E-19 2.3E-23 148.7 14.2 121 1-127 1-139 (665)
176 1udx_A The GTP-binding protein 99.8 7.4E-19 2.5E-23 140.3 12.4 160 11-174 159-327 (416)
177 1h65_A Chloroplast outer envel 99.8 5.1E-18 1.8E-22 128.9 14.3 125 7-134 37-174 (270)
178 1dar_A EF-G, elongation factor 99.8 5.9E-18 2E-22 143.4 15.4 116 7-128 10-143 (691)
179 1wxq_A GTP-binding protein; st 99.8 1.3E-19 4.4E-24 144.3 4.6 85 10-94 1-114 (397)
180 2h5e_A Peptide chain release f 99.8 1.5E-17 5.1E-22 136.9 16.6 115 8-128 12-148 (529)
181 2j69_A Bacterial dynamin-like 99.8 6.5E-18 2.2E-22 143.3 13.8 162 8-172 68-325 (695)
182 2qnr_A Septin-2, protein NEDD5 99.8 3.1E-19 1.1E-23 137.5 5.0 160 8-172 17-214 (301)
183 3t34_A Dynamin-related protein 99.8 6E-19 2.1E-23 139.3 6.5 155 8-165 33-254 (360)
184 2qag_C Septin-7; cell cycle, c 99.8 1.3E-18 4.4E-23 139.0 8.5 160 8-171 30-226 (418)
185 1jwy_B Dynamin A GTPase domain 99.8 3.6E-18 1.2E-22 132.5 10.7 163 7-173 22-263 (315)
186 2xex_A Elongation factor G; GT 99.8 3.6E-17 1.2E-21 138.7 16.9 116 7-128 8-141 (693)
187 2rdo_7 EF-G, elongation factor 99.8 5.3E-17 1.8E-21 137.8 17.7 118 7-128 8-148 (704)
188 1u0l_A Probable GTPase ENGC; p 99.7 1.4E-18 4.7E-23 133.9 6.6 135 24-169 32-170 (301)
189 1zcb_A G alpha I/13; GTP-bindi 99.7 3.4E-17 1.2E-21 128.7 11.8 122 49-172 194-353 (362)
190 1azs_C GS-alpha; complex (lyas 99.7 6.7E-17 2.3E-21 128.1 10.9 121 49-171 210-384 (402)
191 3vqt_A RF-3, peptide chain rel 99.7 3.4E-16 1.2E-20 129.3 15.2 115 8-128 30-166 (548)
192 1jal_A YCHF protein; nucleotid 99.7 8.8E-16 3E-20 120.2 15.4 146 9-154 2-239 (363)
193 2wsm_A Hydrogenase expression/ 99.7 7.8E-17 2.7E-21 118.7 8.8 155 9-174 30-216 (221)
194 2x2e_A Dynamin-1; nitration, h 99.7 2.5E-17 8.5E-22 129.7 4.8 158 7-168 29-254 (353)
195 2hf9_A Probable hydrogenase ni 99.6 5.3E-18 1.8E-22 125.4 -3.0 153 8-171 37-223 (226)
196 2qpt_A EH domain-containing pr 99.6 3.5E-16 1.2E-20 129.4 7.3 121 7-130 63-234 (550)
197 2dby_A GTP-binding protein; GD 99.6 7.7E-15 2.6E-19 115.5 13.8 149 10-158 2-248 (368)
198 3p32_A Probable GTPase RV1496/ 99.6 1.6E-16 5.4E-21 125.2 4.2 104 58-172 172-284 (355)
199 1n0u_A EF-2, elongation factor 99.6 1.2E-15 4E-20 131.9 9.4 116 8-127 18-163 (842)
200 4a9a_A Ribosome-interacting GT 99.6 2.6E-14 8.7E-19 112.5 15.0 153 9-165 72-241 (376)
201 4fn5_A EF-G 1, elongation fact 99.6 5.5E-14 1.9E-18 119.7 16.4 116 8-127 12-150 (709)
202 3j25_A Tetracycline resistance 99.6 8.8E-16 3E-20 129.2 4.3 113 10-128 3-133 (638)
203 2www_A Methylmalonic aciduria 99.5 6.2E-16 2.1E-20 121.4 1.4 103 58-171 167-278 (349)
204 1yrb_A ATP(GTP)binding protein 99.5 3.6E-14 1.2E-18 107.0 10.1 109 58-171 109-256 (262)
205 3zvr_A Dynamin-1; hydrolase, D 99.5 3.4E-14 1.2E-18 120.4 8.9 159 7-169 49-275 (772)
206 2p67_A LAO/AO transport system 99.5 1.4E-14 4.8E-19 113.4 6.0 103 58-171 149-260 (341)
207 2yv5_A YJEQ protein; hydrolase 99.5 2E-13 6.8E-18 105.1 9.1 99 68-169 66-166 (302)
208 2ohf_A Protein OLA1, GTP-bindi 99.4 3.2E-13 1.1E-17 106.7 5.9 88 8-95 21-130 (396)
209 2qm8_A GTPase/ATPase; G protei 99.4 7.7E-13 2.6E-17 103.3 7.6 103 58-171 148-260 (337)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 2.3E-11 7.7E-16 96.4 15.1 86 8-93 19-127 (392)
211 3l82_B F-box only protein 4; T 99.3 6.1E-12 2.1E-16 90.3 6.8 104 66-172 110-223 (227)
212 3l2o_B F-box only protein 4; s 99.2 1.3E-10 4.5E-15 87.3 8.7 106 65-173 194-309 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.0 2.1E-11 7E-16 96.4 -0.4 141 9-159 162-318 (369)
214 2qag_B Septin-6, protein NEDD5 99.0 1E-09 3.5E-14 87.6 9.0 139 10-153 43-217 (427)
215 3h2y_A GTPase family protein; 99.0 1.1E-09 3.7E-14 86.4 8.4 97 67-170 55-158 (368)
216 2j37_W Signal recognition part 99.0 5.6E-10 1.9E-14 91.1 5.9 151 8-169 100-310 (504)
217 3h2y_A GTPase family protein; 99.0 3.4E-11 1.1E-15 95.1 -1.6 135 9-153 160-311 (368)
218 3sop_A Neuronal-specific septi 98.9 8.5E-10 2.9E-14 83.4 5.7 138 9-151 2-179 (270)
219 3ec1_A YQEH GTPase; atnos1, at 98.8 2.7E-09 9.2E-14 84.2 5.5 97 67-170 57-160 (369)
220 1puj_A YLQF, conserved hypothe 98.8 1.1E-08 3.9E-13 77.7 6.9 100 62-171 3-105 (282)
221 1tq4_A IIGP1, interferon-induc 98.8 1.6E-07 5.6E-12 74.8 13.8 161 9-176 69-257 (413)
222 1puj_A YLQF, conserved hypothe 98.5 8.2E-08 2.8E-12 73.0 5.0 57 8-69 119-176 (282)
223 3cnl_A YLQF, putative uncharac 98.5 6.2E-08 2.1E-12 72.9 2.5 57 10-70 100-156 (262)
224 2v3c_C SRP54, signal recogniti 98.4 2.2E-07 7.4E-12 74.7 5.7 83 58-151 181-271 (432)
225 3dm5_A SRP54, signal recogniti 98.4 1.1E-06 3.8E-11 70.5 8.4 91 58-160 183-279 (443)
226 1f5n_A Interferon-induced guan 98.3 4.9E-07 1.7E-11 75.1 4.3 64 7-70 36-103 (592)
227 3cnl_A YLQF, putative uncharac 98.3 3.9E-07 1.3E-11 68.5 3.4 94 65-169 4-98 (262)
228 3kl4_A SRP54, signal recogniti 98.2 6E-07 2.1E-11 72.0 3.1 90 58-159 180-277 (433)
229 1t9h_A YLOQ, probable GTPase E 98.2 4.6E-07 1.6E-11 69.5 2.3 91 71-164 76-169 (307)
230 3szr_A Interferon-induced GTP- 98.1 7.5E-06 2.6E-10 68.7 6.9 25 10-34 46-70 (608)
231 1j8m_F SRP54, signal recogniti 98.1 8.8E-06 3E-10 62.2 6.7 91 58-161 181-280 (297)
232 1bif_A 6-phosphofructo-2-kinas 97.9 7.3E-07 2.5E-11 72.6 -1.9 110 7-121 37-156 (469)
233 2rcn_A Probable GTPase ENGC; Y 97.9 4.9E-05 1.7E-09 59.4 8.2 85 78-166 127-213 (358)
234 3q5d_A Atlastin-1; G protein, 97.8 4.4E-05 1.5E-09 61.5 6.4 25 8-32 66-90 (447)
235 1ye8_A Protein THEP1, hypothet 97.6 4.1E-05 1.4E-09 54.0 3.2 23 10-32 1-23 (178)
236 1kgd_A CASK, peripheral plasma 97.5 6.7E-05 2.3E-09 52.9 3.0 23 10-32 6-28 (180)
237 1lvg_A Guanylate kinase, GMP k 97.4 7.8E-05 2.7E-09 53.4 3.0 22 10-31 5-26 (198)
238 1t9h_A YLOQ, probable GTPase E 97.3 5.6E-05 1.9E-09 57.9 1.4 25 9-33 173-197 (307)
239 2xxa_A Signal recognition part 97.3 0.0011 3.8E-08 53.2 9.0 83 58-151 184-273 (433)
240 3a00_A Guanylate kinase, GMP k 97.3 0.00013 4.4E-09 51.7 2.9 21 12-32 4-24 (186)
241 3ney_A 55 kDa erythrocyte memb 97.3 0.00019 6.6E-09 51.3 3.7 26 7-32 17-42 (197)
242 3tr0_A Guanylate kinase, GMP k 97.3 0.00014 4.9E-09 52.0 3.0 23 10-32 8-30 (205)
243 1s96_A Guanylate kinase, GMP k 97.3 0.00015 5E-09 52.9 3.0 25 9-33 16-40 (219)
244 1ex7_A Guanylate kinase; subst 97.3 0.00016 5.6E-09 51.3 3.1 21 12-32 4-24 (186)
245 1znw_A Guanylate kinase, GMP k 97.2 0.00016 5.4E-09 52.1 3.0 23 11-33 22-44 (207)
246 1knq_A Gluconate kinase; ALFA/ 97.2 0.00025 8.7E-09 49.4 4.0 24 8-31 7-30 (175)
247 1z6g_A Guanylate kinase; struc 97.2 0.00016 5.4E-09 52.6 3.0 24 10-33 24-47 (218)
248 4gp7_A Metallophosphoesterase; 97.2 0.00016 5.5E-09 50.5 2.9 20 11-30 11-30 (171)
249 1zp6_A Hypothetical protein AT 97.2 0.00027 9.2E-09 50.0 3.6 24 9-32 9-32 (191)
250 3tau_A Guanylate kinase, GMP k 97.2 0.00022 7.4E-09 51.5 3.1 24 10-33 9-32 (208)
251 3iij_A Coilin-interacting nucl 97.2 0.00027 9.2E-09 49.6 3.5 24 7-30 9-32 (180)
252 3c8u_A Fructokinase; YP_612366 97.2 0.00026 8.8E-09 51.0 3.3 25 8-32 21-45 (208)
253 1kht_A Adenylate kinase; phosp 97.1 0.00029 9.9E-09 49.7 3.3 23 9-31 3-25 (192)
254 3lw7_A Adenylate kinase relate 97.1 0.00028 9.7E-09 48.9 3.2 20 10-29 2-21 (179)
255 3tif_A Uncharacterized ABC tra 97.1 0.00025 8.6E-09 52.2 3.0 23 11-33 33-55 (235)
256 1y63_A LMAJ004144AAA protein; 97.1 0.0004 1.4E-08 49.0 3.7 27 6-32 7-33 (184)
257 2j41_A Guanylate kinase; GMP, 97.1 0.00035 1.2E-08 50.0 3.5 26 8-33 5-30 (207)
258 2qor_A Guanylate kinase; phosp 97.1 0.00029 1E-08 50.5 3.1 25 8-32 11-35 (204)
259 3fb4_A Adenylate kinase; psych 97.1 0.00032 1.1E-08 50.7 3.2 21 10-30 1-21 (216)
260 1htw_A HI0065; nucleotide-bind 97.1 0.00032 1.1E-08 48.4 3.0 24 10-33 34-57 (158)
261 2rcn_A Probable GTPase ENGC; Y 97.1 0.00032 1.1E-08 54.9 3.1 25 10-34 216-240 (358)
262 3dl0_A Adenylate kinase; phosp 97.1 0.00035 1.2E-08 50.5 3.2 21 10-30 1-21 (216)
263 1qhx_A CPT, protein (chloramph 97.1 0.00042 1.4E-08 48.4 3.5 22 10-31 4-25 (178)
264 1kag_A SKI, shikimate kinase I 97.0 0.00034 1.2E-08 48.6 3.0 23 10-32 5-27 (173)
265 2plr_A DTMP kinase, probable t 97.0 0.00047 1.6E-08 49.5 3.8 25 7-31 2-26 (213)
266 2pcj_A ABC transporter, lipopr 97.0 0.00031 1.1E-08 51.4 2.8 23 11-33 32-54 (224)
267 3asz_A Uridine kinase; cytidin 97.0 0.00039 1.3E-08 50.0 3.3 24 8-31 5-28 (211)
268 2bdt_A BH3686; alpha-beta prot 97.0 0.00037 1.3E-08 49.3 3.0 21 11-31 4-24 (189)
269 2onk_A Molybdate/tungstate ABC 97.0 0.00039 1.3E-08 51.4 3.1 23 11-33 26-48 (240)
270 3kb2_A SPBC2 prophage-derived 97.0 0.00041 1.4E-08 48.0 3.1 21 11-31 3-23 (173)
271 1zd8_A GTP:AMP phosphotransfer 97.0 0.00042 1.4E-08 50.6 3.2 21 10-30 8-28 (227)
272 1tev_A UMP-CMP kinase; ploop, 97.0 0.00051 1.7E-08 48.6 3.5 24 8-31 2-25 (196)
273 1b0u_A Histidine permease; ABC 97.0 0.00041 1.4E-08 52.0 3.1 23 11-33 34-56 (262)
274 2cbz_A Multidrug resistance-as 97.0 0.00041 1.4E-08 51.2 3.0 23 11-33 33-55 (237)
275 1sgw_A Putative ABC transporte 97.0 0.00043 1.5E-08 50.2 3.1 23 11-33 37-59 (214)
276 3gfo_A Cobalt import ATP-bindi 97.0 0.00042 1.4E-08 52.3 3.1 23 11-33 36-58 (275)
277 2i3b_A HCR-ntpase, human cance 97.0 0.00042 1.5E-08 49.3 2.9 22 11-32 3-24 (189)
278 2bbw_A Adenylate kinase 4, AK4 97.0 0.00049 1.7E-08 50.9 3.3 21 10-30 28-48 (246)
279 1ly1_A Polynucleotide kinase; 97.0 0.00058 2E-08 47.6 3.5 22 10-31 3-24 (181)
280 3cm0_A Adenylate kinase; ATP-b 96.9 0.0006 2E-08 48.0 3.6 23 8-30 3-25 (186)
281 4g1u_C Hemin import ATP-bindin 96.9 0.00044 1.5E-08 51.9 3.0 23 11-33 39-61 (266)
282 2jaq_A Deoxyguanosine kinase; 96.9 0.00053 1.8E-08 48.9 3.3 22 10-31 1-22 (205)
283 2v9p_A Replication protein E1; 96.9 0.00047 1.6E-08 52.7 3.1 24 9-32 126-149 (305)
284 4eun_A Thermoresistant glucoki 96.9 0.00055 1.9E-08 48.9 3.4 23 9-31 29-51 (200)
285 1mv5_A LMRA, multidrug resista 96.9 0.00052 1.8E-08 50.8 3.3 24 10-33 29-52 (243)
286 2wwf_A Thymidilate kinase, put 96.9 0.00061 2.1E-08 48.9 3.6 24 8-31 9-32 (212)
287 1g6h_A High-affinity branched- 96.9 0.00046 1.6E-08 51.5 3.0 23 11-33 35-57 (257)
288 1np6_A Molybdopterin-guanine d 96.9 0.0005 1.7E-08 48.2 3.0 23 10-32 7-29 (174)
289 2ff7_A Alpha-hemolysin translo 96.9 0.00052 1.8E-08 50.9 3.2 23 11-33 37-59 (247)
290 2pze_A Cystic fibrosis transme 96.9 0.0005 1.7E-08 50.4 3.1 23 11-33 36-58 (229)
291 2olj_A Amino acid ABC transpor 96.9 0.00049 1.7E-08 51.6 3.1 23 11-33 52-74 (263)
292 3sr0_A Adenylate kinase; phosp 96.9 0.00057 1.9E-08 49.3 3.2 22 10-31 1-22 (206)
293 1ji0_A ABC transporter; ATP bi 96.9 0.00051 1.7E-08 50.8 3.0 23 11-33 34-56 (240)
294 2eyu_A Twitching motility prot 96.9 0.00049 1.7E-08 51.5 2.9 23 10-32 26-48 (261)
295 1u0l_A Probable GTPase ENGC; p 96.9 0.00061 2.1E-08 52.1 3.5 25 10-34 170-194 (301)
296 2qi9_C Vitamin B12 import ATP- 96.9 0.00054 1.9E-08 50.9 3.1 23 11-33 28-50 (249)
297 1vpl_A ABC transporter, ATP-bi 96.9 0.00055 1.9E-08 51.1 3.1 23 11-33 43-65 (256)
298 2if2_A Dephospho-COA kinase; a 96.9 0.00056 1.9E-08 48.9 3.0 22 10-31 2-23 (204)
299 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00056 1.9E-08 50.9 3.1 22 11-32 31-52 (250)
300 1cke_A CK, MSSA, protein (cyti 96.9 0.00062 2.1E-08 49.5 3.3 22 10-31 6-27 (227)
301 2ghi_A Transport protein; mult 96.9 0.00061 2.1E-08 51.0 3.2 23 11-33 48-70 (260)
302 2cdn_A Adenylate kinase; phosp 96.9 0.00082 2.8E-08 48.0 3.8 25 7-31 18-42 (201)
303 2ixe_A Antigen peptide transpo 96.9 0.00057 2E-08 51.4 3.0 23 11-33 47-69 (271)
304 3b85_A Phosphate starvation-in 96.9 0.00044 1.5E-08 49.9 2.3 22 11-32 24-45 (208)
305 2zu0_C Probable ATP-dependent 96.9 0.00062 2.1E-08 51.1 3.1 22 11-32 48-69 (267)
306 1e4v_A Adenylate kinase; trans 96.9 0.00061 2.1E-08 49.2 3.0 22 10-31 1-22 (214)
307 1nn5_A Similar to deoxythymidy 96.9 0.0007 2.4E-08 48.7 3.3 24 8-31 8-31 (215)
308 1nks_A Adenylate kinase; therm 96.8 0.0007 2.4E-08 47.8 3.2 22 10-31 2-23 (194)
309 2ihy_A ABC transporter, ATP-bi 96.8 0.00067 2.3E-08 51.3 3.3 23 11-33 49-71 (279)
310 3ec2_A DNA replication protein 96.8 0.00052 1.8E-08 48.1 2.5 23 10-32 39-61 (180)
311 3vaa_A Shikimate kinase, SK; s 96.8 0.00072 2.5E-08 48.3 3.3 22 10-31 26-47 (199)
312 2yv5_A YJEQ protein; hydrolase 96.8 0.00062 2.1E-08 52.1 3.0 24 9-33 165-188 (302)
313 2rhm_A Putative kinase; P-loop 96.8 0.00076 2.6E-08 47.6 3.3 23 9-31 5-27 (193)
314 3t61_A Gluconokinase; PSI-biol 96.8 0.00067 2.3E-08 48.5 3.0 22 10-31 19-40 (202)
315 3uie_A Adenylyl-sulfate kinase 96.8 0.00066 2.3E-08 48.5 3.0 24 9-32 25-48 (200)
316 2nq2_C Hypothetical ABC transp 96.8 0.00065 2.2E-08 50.6 3.0 23 11-33 33-55 (253)
317 1jjv_A Dephospho-COA kinase; P 96.8 0.00082 2.8E-08 48.2 3.4 22 10-31 3-24 (206)
318 3lnc_A Guanylate kinase, GMP k 96.8 0.0004 1.4E-08 50.8 1.7 23 10-32 28-51 (231)
319 2yz2_A Putative ABC transporte 96.8 0.00068 2.3E-08 50.9 3.0 23 11-33 35-57 (266)
320 2v54_A DTMP kinase, thymidylat 96.8 0.00091 3.1E-08 47.7 3.5 24 9-32 4-27 (204)
321 2pt5_A Shikimate kinase, SK; a 96.8 0.00084 2.9E-08 46.3 3.2 22 10-31 1-22 (168)
322 3co5_A Putative two-component 96.8 0.0027 9.4E-08 42.7 5.7 24 9-32 27-50 (143)
323 3aez_A Pantothenate kinase; tr 96.8 0.0007 2.4E-08 52.0 3.0 26 7-32 88-113 (312)
324 3tlx_A Adenylate kinase 2; str 96.8 0.00098 3.3E-08 49.3 3.6 24 8-31 28-51 (243)
325 2ehv_A Hypothetical protein PH 96.8 0.00078 2.7E-08 49.6 3.1 20 11-30 32-51 (251)
326 2pjz_A Hypothetical protein ST 96.8 0.00087 3E-08 50.2 3.3 23 11-33 32-54 (263)
327 1ukz_A Uridylate kinase; trans 96.8 0.0014 4.9E-08 46.7 4.4 22 9-30 15-36 (203)
328 1aky_A Adenylate kinase; ATP:A 96.7 0.00099 3.4E-08 48.3 3.5 23 9-31 4-26 (220)
329 4a74_A DNA repair and recombin 96.7 0.00073 2.5E-08 49.1 2.7 23 11-33 27-49 (231)
330 2yvu_A Probable adenylyl-sulfa 96.7 0.0013 4.6E-08 46.2 4.0 25 7-31 11-35 (186)
331 2f1r_A Molybdopterin-guanine d 96.7 0.00038 1.3E-08 48.7 1.1 22 11-32 4-25 (171)
332 1gvn_B Zeta; postsegregational 96.7 0.0012 4.2E-08 50.0 3.8 25 7-31 31-55 (287)
333 1uf9_A TT1252 protein; P-loop, 96.7 0.0011 3.9E-08 47.1 3.5 26 7-32 6-31 (203)
334 3trf_A Shikimate kinase, SK; a 96.7 0.001 3.4E-08 46.8 3.2 22 10-31 6-27 (185)
335 2xb4_A Adenylate kinase; ATP-b 96.7 0.001 3.5E-08 48.4 3.3 22 10-31 1-22 (223)
336 3nh6_A ATP-binding cassette SU 96.7 0.0006 2.1E-08 52.2 2.0 24 10-33 81-104 (306)
337 1lw7_A Transcriptional regulat 96.7 0.00079 2.7E-08 52.9 2.6 25 9-33 170-194 (365)
338 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00088 3E-08 52.4 2.8 23 11-33 32-54 (359)
339 4ido_A Atlastin-1; GTPase, GTP 96.7 0.0032 1.1E-07 50.7 6.0 63 8-70 66-152 (457)
340 1qf9_A UMP/CMP kinase, protein 96.7 0.0015 5.2E-08 46.0 3.8 22 10-31 7-28 (194)
341 2jeo_A Uridine-cytidine kinase 96.7 0.0013 4.6E-08 48.5 3.6 24 8-31 24-47 (245)
342 2c95_A Adenylate kinase 1; tra 96.7 0.0012 4.2E-08 46.6 3.3 22 9-30 9-30 (196)
343 2qt1_A Nicotinamide riboside k 96.6 0.0013 4.6E-08 47.1 3.5 25 8-32 20-44 (207)
344 2chg_A Replication factor C sm 96.6 0.0033 1.1E-07 45.0 5.7 21 11-31 40-60 (226)
345 1z47_A CYSA, putative ABC-tran 96.6 0.0011 3.6E-08 51.9 3.1 23 11-33 43-65 (355)
346 3n70_A Transport activator; si 96.6 0.0051 1.7E-07 41.4 6.1 24 9-32 24-47 (145)
347 2pbr_A DTMP kinase, thymidylat 96.6 0.0012 4.2E-08 46.5 3.1 22 10-31 1-22 (195)
348 4e22_A Cytidylate kinase; P-lo 96.6 0.0016 5.3E-08 48.4 3.8 22 9-30 27-48 (252)
349 2vli_A Antibiotic resistance p 96.6 0.00075 2.5E-08 47.3 2.0 24 8-31 4-27 (183)
350 2bbs_A Cystic fibrosis transme 96.6 0.0011 3.8E-08 50.4 3.0 23 11-33 66-88 (290)
351 1xjc_A MOBB protein homolog; s 96.6 0.0013 4.4E-08 45.8 3.1 22 10-31 5-26 (169)
352 2yyz_A Sugar ABC transporter, 96.6 0.0011 3.9E-08 51.8 3.1 23 11-33 31-53 (359)
353 3tui_C Methionine import ATP-b 96.6 0.0012 4E-08 51.8 3.1 23 11-33 56-78 (366)
354 2z0h_A DTMP kinase, thymidylat 96.6 0.0013 4.6E-08 46.5 3.2 21 11-31 2-22 (197)
355 2it1_A 362AA long hypothetical 96.6 0.0012 4E-08 51.8 3.1 23 11-33 31-53 (362)
356 1via_A Shikimate kinase; struc 96.6 0.0012 4.1E-08 46.0 2.9 21 11-31 6-26 (175)
357 3rlf_A Maltose/maltodextrin im 96.6 0.0012 4.1E-08 52.1 3.1 23 11-33 31-53 (381)
358 2kjq_A DNAA-related protein; s 96.6 0.00082 2.8E-08 45.8 1.9 24 10-33 37-60 (149)
359 3jvv_A Twitching mobility prot 96.6 0.0011 3.9E-08 51.8 2.9 22 11-32 125-146 (356)
360 1rj9_A FTSY, signal recognitio 96.6 0.0012 4.1E-08 50.5 3.0 89 59-159 186-286 (304)
361 1v43_A Sugar-binding transport 96.6 0.0013 4.4E-08 51.8 3.1 23 11-33 39-61 (372)
362 1g29_1 MALK, maltose transport 96.6 0.0013 4.3E-08 51.8 3.1 23 11-33 31-53 (372)
363 1odf_A YGR205W, hypothetical 3 96.6 0.0021 7.2E-08 48.8 4.2 24 7-30 29-52 (290)
364 2x8a_A Nuclear valosin-contain 96.6 0.0013 4.3E-08 49.6 3.0 21 12-32 47-67 (274)
365 1zak_A Adenylate kinase; ATP:A 96.6 0.0012 4.1E-08 47.9 2.7 21 10-30 6-26 (222)
366 2vp4_A Deoxynucleoside kinase; 96.5 0.0019 6.5E-08 47.2 3.7 26 7-32 18-43 (230)
367 3umf_A Adenylate kinase; rossm 96.5 0.0023 8E-08 46.4 4.1 25 7-31 26-51 (217)
368 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0013 4.5E-08 50.9 2.9 24 10-33 172-195 (330)
369 3be4_A Adenylate kinase; malar 96.5 0.0015 5.3E-08 47.2 3.1 22 10-31 6-27 (217)
370 2gza_A Type IV secretion syste 96.5 0.0012 4.1E-08 51.8 2.7 24 10-33 176-199 (361)
371 2ewv_A Twitching motility prot 96.5 0.0015 5.2E-08 51.4 3.1 23 10-32 137-159 (372)
372 2pez_A Bifunctional 3'-phospho 96.5 0.0021 7.1E-08 44.9 3.5 24 8-31 4-27 (179)
373 1rz3_A Hypothetical protein rb 96.5 0.0019 6.3E-08 46.2 3.3 24 8-31 21-44 (201)
374 3b9q_A Chloroplast SRP recepto 96.5 0.0015 5.2E-08 49.9 3.0 23 9-31 100-122 (302)
375 1ixz_A ATP-dependent metallopr 96.5 0.0016 5.4E-08 48.3 3.0 21 12-32 52-72 (254)
376 1vht_A Dephospho-COA kinase; s 96.5 0.002 6.8E-08 46.5 3.5 23 9-31 4-26 (218)
377 3gmt_A Adenylate kinase; ssgci 96.5 0.0019 6.4E-08 47.3 3.3 30 1-31 1-30 (230)
378 3v9p_A DTMP kinase, thymidylat 96.4 0.0016 5.4E-08 47.7 2.8 29 3-31 19-47 (227)
379 1gtv_A TMK, thymidylate kinase 96.4 0.00066 2.3E-08 48.8 0.8 21 11-31 2-22 (214)
380 1jbk_A CLPB protein; beta barr 96.4 0.002 6.8E-08 45.0 3.3 23 10-32 44-66 (195)
381 3e70_C DPA, signal recognition 96.4 0.0017 5.8E-08 50.3 3.0 91 59-161 213-309 (328)
382 3d31_A Sulfate/molybdate ABC t 96.4 0.0011 3.7E-08 51.7 1.9 23 11-33 28-50 (348)
383 2bwj_A Adenylate kinase 5; pho 96.4 0.0019 6.4E-08 45.8 3.1 22 10-31 13-34 (199)
384 1sq5_A Pantothenate kinase; P- 96.4 0.0019 6.6E-08 49.5 3.3 25 8-32 79-103 (308)
385 3r20_A Cytidylate kinase; stru 96.4 0.002 7E-08 47.3 3.3 23 8-30 8-30 (233)
386 1e6c_A Shikimate kinase; phosp 96.4 0.0019 6.5E-08 44.7 2.9 22 10-31 3-24 (173)
387 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0021 7.3E-08 47.9 3.4 22 10-31 5-26 (260)
388 2f6r_A COA synthase, bifunctio 96.4 0.0026 9E-08 48.0 3.9 23 8-30 74-96 (281)
389 2grj_A Dephospho-COA kinase; T 96.4 0.0026 8.7E-08 45.3 3.6 26 7-32 10-35 (192)
390 3gd7_A Fusion complex of cysti 96.4 0.0017 5.7E-08 51.5 2.8 22 11-32 49-70 (390)
391 3tqc_A Pantothenate kinase; bi 96.4 0.0027 9.1E-08 48.9 3.9 24 8-31 91-114 (321)
392 2p5t_B PEZT; postsegregational 96.4 0.0018 6.2E-08 48.1 2.9 24 8-31 31-54 (253)
393 2iyv_A Shikimate kinase, SK; t 96.4 0.0018 6.3E-08 45.4 2.8 22 10-31 3-24 (184)
394 1ak2_A Adenylate kinase isoenz 96.4 0.0024 8.2E-08 46.7 3.5 23 9-31 16-38 (233)
395 2ze6_A Isopentenyl transferase 96.4 0.0021 7.1E-08 47.8 3.1 21 11-31 3-23 (253)
396 1nij_A Hypothetical protein YJ 96.4 0.0016 5.3E-08 50.2 2.4 23 11-33 6-28 (318)
397 3d3q_A TRNA delta(2)-isopenten 96.4 0.0026 9E-08 49.3 3.7 29 1-31 1-29 (340)
398 1p9r_A General secretion pathw 96.3 0.0019 6.5E-08 51.6 2.9 23 11-33 169-191 (418)
399 1in4_A RUVB, holliday junction 96.3 0.0021 7.2E-08 49.8 3.0 22 11-32 53-74 (334)
400 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0023 7.8E-08 46.4 3.0 22 11-32 25-46 (235)
401 1iy2_A ATP-dependent metallopr 96.3 0.0023 7.8E-08 48.2 3.0 21 12-32 76-96 (278)
402 1uj2_A Uridine-cytidine kinase 96.3 0.0028 9.6E-08 47.0 3.5 24 8-31 21-44 (252)
403 1oxx_K GLCV, glucose, ABC tran 96.3 0.0011 3.6E-08 51.9 1.2 23 11-33 33-55 (353)
404 2oap_1 GSPE-2, type II secreti 96.3 0.0022 7.4E-08 52.7 3.0 24 10-33 261-284 (511)
405 3kta_A Chromosome segregation 96.2 0.0025 8.7E-08 44.5 2.9 21 11-31 28-48 (182)
406 2og2_A Putative signal recogni 96.2 0.0025 8.5E-08 49.9 3.0 23 9-31 157-179 (359)
407 4eaq_A DTMP kinase, thymidylat 96.2 0.0038 1.3E-07 45.7 3.7 25 8-32 25-49 (229)
408 1zuh_A Shikimate kinase; alpha 96.2 0.0033 1.1E-07 43.4 3.2 22 10-31 8-29 (168)
409 2npi_A Protein CLP1; CLP1-PCF1 96.2 0.0023 7.8E-08 51.8 2.7 23 10-32 139-161 (460)
410 2p65_A Hypothetical protein PF 96.2 0.0024 8.2E-08 44.5 2.5 24 9-32 43-66 (187)
411 2obl_A ESCN; ATPase, hydrolase 96.2 0.0028 9.5E-08 49.4 3.0 24 10-33 72-95 (347)
412 3nwj_A ATSK2; P loop, shikimat 96.2 0.0028 9.5E-08 47.1 2.8 23 9-31 48-70 (250)
413 2yhs_A FTSY, cell division pro 96.2 0.0028 9.5E-08 51.6 3.0 92 58-161 376-479 (503)
414 1zcb_A G alpha I/13; GTP-bindi 96.2 0.0035 1.2E-07 49.2 3.5 24 7-30 31-54 (362)
415 1cr0_A DNA primase/helicase; R 96.2 0.0026 9E-08 48.2 2.7 23 11-33 37-59 (296)
416 1m7g_A Adenylylsulfate kinase; 96.1 0.004 1.4E-07 44.8 3.5 24 8-31 24-47 (211)
417 3bos_A Putative DNA replicatio 96.1 0.0037 1.3E-07 45.5 3.2 23 9-31 52-74 (242)
418 1lv7_A FTSH; alpha/beta domain 96.1 0.0033 1.1E-07 46.6 3.0 23 10-32 46-68 (257)
419 2cvh_A DNA repair and recombin 96.1 0.0034 1.2E-07 45.2 3.0 22 10-31 21-42 (220)
420 1n0w_A DNA repair protein RAD5 96.1 0.0034 1.2E-07 45.9 3.0 22 11-32 26-47 (243)
421 3crm_A TRNA delta(2)-isopenten 96.1 0.0049 1.7E-07 47.5 3.8 22 10-31 6-27 (323)
422 2w58_A DNAI, primosome compone 96.1 0.004 1.4E-07 44.3 3.2 23 10-32 55-77 (202)
423 2dpy_A FLII, flagellum-specifi 96.0 0.0039 1.3E-07 50.2 3.0 24 10-33 158-181 (438)
424 3pfi_A Holliday junction ATP-d 96.0 0.014 4.9E-07 44.9 6.1 23 10-32 56-78 (338)
425 3euj_A Chromosome partition pr 95.9 0.0041 1.4E-07 50.6 3.0 21 11-31 31-51 (483)
426 1svm_A Large T antigen; AAA+ f 95.9 0.0041 1.4E-07 49.0 3.0 23 9-31 169-191 (377)
427 1ltq_A Polynucleotide kinase; 95.9 0.0052 1.8E-07 46.6 3.5 22 10-31 3-24 (301)
428 4i1u_A Dephospho-COA kinase; s 95.9 0.0063 2.2E-07 43.9 3.6 31 1-31 1-31 (210)
429 3b60_A Lipid A export ATP-bind 95.9 0.0041 1.4E-07 51.9 3.0 24 10-33 370-393 (582)
430 1yqt_A RNAse L inhibitor; ATP- 95.9 0.0064 2.2E-07 50.3 4.1 24 10-33 48-71 (538)
431 3ake_A Cytidylate kinase; CMP 95.9 0.0059 2E-07 43.5 3.5 21 11-31 4-24 (208)
432 2h92_A Cytidylate kinase; ross 95.9 0.0048 1.6E-07 44.5 3.0 24 8-31 2-25 (219)
433 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.0055 1.9E-07 41.6 3.1 19 12-30 26-44 (149)
434 3j16_B RLI1P; ribosome recycli 95.9 0.0062 2.1E-07 51.0 3.9 24 11-34 105-128 (608)
435 3zvl_A Bifunctional polynucleo 95.9 0.0077 2.6E-07 48.1 4.3 24 9-32 258-281 (416)
436 1njg_A DNA polymerase III subu 95.8 0.0051 1.8E-07 44.5 3.0 21 11-31 47-67 (250)
437 1q3t_A Cytidylate kinase; nucl 95.8 0.0065 2.2E-07 44.5 3.5 25 7-31 14-38 (236)
438 3b5x_A Lipid A export ATP-bind 95.8 0.0064 2.2E-07 50.8 3.8 23 11-33 371-393 (582)
439 3ozx_A RNAse L inhibitor; ATP 95.8 0.0067 2.3E-07 50.1 3.8 24 11-34 27-50 (538)
440 4a82_A Cystic fibrosis transme 95.8 0.004 1.4E-07 51.9 2.4 24 10-33 368-391 (578)
441 3h4m_A Proteasome-activating n 95.7 0.0056 1.9E-07 46.0 2.9 23 10-32 52-74 (285)
442 3b9p_A CG5977-PA, isoform A; A 95.7 0.0056 1.9E-07 46.3 2.9 24 9-32 54-77 (297)
443 3ld9_A DTMP kinase, thymidylat 95.7 0.0085 2.9E-07 43.6 3.7 25 6-30 18-42 (223)
444 2yl4_A ATP-binding cassette SU 95.7 0.0043 1.5E-07 52.0 2.4 24 10-33 371-394 (595)
445 1tue_A Replication protein E1; 95.7 0.0052 1.8E-07 44.1 2.5 22 10-31 59-80 (212)
446 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.0062 2.1E-07 45.1 3.0 22 10-31 40-61 (262)
447 1nlf_A Regulatory protein REPA 95.7 0.0055 1.9E-07 46.1 2.7 21 11-31 32-52 (279)
448 3bk7_A ABC transporter ATP-bin 95.7 0.0084 2.9E-07 50.3 4.0 25 10-34 118-142 (607)
449 3exa_A TRNA delta(2)-isopenten 95.7 0.008 2.7E-07 46.0 3.6 24 8-31 2-25 (322)
450 3qf4_B Uncharacterized ABC tra 95.7 0.0047 1.6E-07 51.7 2.5 24 10-33 382-405 (598)
451 4dzz_A Plasmid partitioning pr 95.7 0.016 5.3E-07 41.2 5.0 85 58-149 76-162 (206)
452 4edh_A DTMP kinase, thymidylat 95.7 0.0085 2.9E-07 43.3 3.6 24 7-30 4-27 (213)
453 3a8t_A Adenylate isopentenyltr 95.6 0.0095 3.2E-07 46.1 3.8 22 10-31 41-62 (339)
454 1p5z_B DCK, deoxycytidine kina 95.6 0.0063 2.1E-07 45.3 2.8 25 8-32 23-47 (263)
455 3qf4_A ABC transporter, ATP-bi 95.6 0.0054 1.9E-07 51.3 2.7 23 11-33 371-393 (587)
456 1l8q_A Chromosomal replication 95.6 0.0065 2.2E-07 46.7 2.9 23 10-32 38-60 (324)
457 2qmh_A HPR kinase/phosphorylas 95.6 0.0078 2.7E-07 42.9 3.0 26 8-33 33-58 (205)
458 3cf0_A Transitional endoplasmi 95.6 0.0069 2.3E-07 46.1 2.9 23 10-32 50-72 (301)
459 2px0_A Flagellar biosynthesis 95.6 0.0066 2.3E-07 46.2 2.7 85 58-152 183-273 (296)
460 3ozx_A RNAse L inhibitor; ATP 95.6 0.009 3.1E-07 49.4 3.7 24 11-34 296-319 (538)
461 3t15_A Ribulose bisphosphate c 95.6 0.0068 2.3E-07 46.0 2.8 23 10-32 37-59 (293)
462 3ch4_B Pmkase, phosphomevalona 95.5 0.014 4.7E-07 41.7 4.1 31 1-31 3-33 (202)
463 3bk7_A ABC transporter ATP-bin 95.5 0.0097 3.3E-07 49.9 3.8 24 11-34 384-407 (607)
464 3qf7_A RAD50; ABC-ATPase, ATPa 95.5 0.008 2.7E-07 47.2 3.1 19 12-30 26-44 (365)
465 1vma_A Cell division protein F 95.5 0.0084 2.9E-07 45.9 3.0 92 58-161 187-290 (306)
466 1yqt_A RNAse L inhibitor; ATP- 95.5 0.011 3.9E-07 48.8 4.0 24 11-34 314-337 (538)
467 1sxj_E Activator 1 40 kDa subu 95.5 0.007 2.4E-07 46.9 2.6 21 12-32 39-59 (354)
468 2qby_A CDC6 homolog 1, cell di 95.4 0.0076 2.6E-07 47.0 2.8 23 10-32 46-68 (386)
469 3syl_A Protein CBBX; photosynt 95.4 0.012 4E-07 44.7 3.8 22 9-30 67-88 (309)
470 2dr3_A UPF0273 protein PH0284; 95.4 0.0089 3.1E-07 43.7 2.9 21 11-31 25-45 (247)
471 1pzn_A RAD51, DNA repair and r 95.4 0.0083 2.8E-07 46.8 2.7 24 10-33 132-155 (349)
472 1ofh_A ATP-dependent HSL prote 95.4 0.0094 3.2E-07 45.2 3.0 22 10-31 51-72 (310)
473 3j16_B RLI1P; ribosome recycli 95.4 0.012 4.1E-07 49.4 3.8 23 12-34 381-403 (608)
474 2ocp_A DGK, deoxyguanosine kin 95.3 0.012 4E-07 43.2 3.4 23 10-32 3-25 (241)
475 3uc9_A Increased recombination 95.3 0.042 1.4E-06 40.0 6.1 23 10-32 28-52 (233)
476 1fnn_A CDC6P, cell division co 95.3 0.01 3.6E-07 46.4 3.2 23 11-33 46-68 (389)
477 1a7j_A Phosphoribulokinase; tr 95.3 0.0057 2E-07 46.4 1.6 24 8-31 4-27 (290)
478 3cwq_A Para family chromosome 95.3 0.076 2.6E-06 38.0 7.5 85 58-149 68-153 (209)
479 1d2n_A N-ethylmaleimide-sensit 95.3 0.013 4.4E-07 43.8 3.5 25 8-32 63-87 (272)
480 1sxj_C Activator 1 40 kDa subu 95.3 0.0099 3.4E-07 46.0 2.9 21 12-32 49-69 (340)
481 4fcw_A Chaperone protein CLPB; 95.3 0.016 5.6E-07 44.0 4.0 23 10-32 48-70 (311)
482 3lv8_A DTMP kinase, thymidylat 95.3 0.012 4.1E-07 43.2 3.1 25 7-31 25-49 (236)
483 3foz_A TRNA delta(2)-isopenten 95.2 0.017 5.6E-07 44.2 3.9 22 10-31 11-32 (316)
484 2ga8_A Hypothetical 39.9 kDa p 95.2 0.013 4.4E-07 45.7 3.4 22 9-30 24-45 (359)
485 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.011 3.6E-07 45.6 2.9 23 10-32 46-68 (322)
486 3u61_B DNA polymerase accessor 95.2 0.14 4.7E-06 39.1 9.1 21 12-32 51-71 (324)
487 2qgz_A Helicase loader, putati 95.1 0.014 4.9E-07 44.6 3.2 23 9-31 152-174 (308)
488 4tmk_A Protein (thymidylate ki 95.1 0.015 5.2E-07 42.0 3.2 24 8-31 2-25 (213)
489 2iw3_A Elongation factor 3A; a 95.1 0.014 4.9E-07 51.4 3.5 24 11-34 463-486 (986)
490 3eie_A Vacuolar protein sortin 95.0 0.014 4.7E-07 44.9 3.1 24 9-32 51-74 (322)
491 3tqf_A HPR(Ser) kinase; transf 95.0 0.016 5.3E-07 40.4 3.0 24 9-32 16-39 (181)
492 3qks_A DNA double-strand break 95.0 0.015 5.2E-07 41.6 3.1 20 11-30 25-44 (203)
493 1sxj_D Activator 1 41 kDa subu 95.0 0.013 4.5E-07 45.3 3.0 22 11-32 60-81 (353)
494 4b4t_K 26S protease regulatory 95.0 0.013 4.5E-07 46.9 3.0 22 11-32 208-229 (428)
495 2v1u_A Cell division control p 95.0 0.012 4E-07 46.0 2.6 23 10-32 45-67 (387)
496 2qen_A Walker-type ATPase; unk 95.0 0.015 5E-07 44.8 3.1 22 11-32 33-54 (350)
497 2r62_A Cell division protease 95.0 0.0061 2.1E-07 45.4 0.9 21 11-31 46-66 (268)
498 3pxg_A Negative regulator of g 95.0 0.014 4.6E-07 47.5 3.0 24 9-32 201-224 (468)
499 3cr8_A Sulfate adenylyltranfer 94.9 0.0099 3.4E-07 49.2 2.1 25 8-32 368-392 (552)
500 4b4t_M 26S protease regulatory 94.9 0.015 5.1E-07 46.6 3.0 23 10-32 216-238 (434)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.8e-45 Score=270.29 Aligned_cols=199 Identities=74% Similarity=1.168 Sum_probs=148.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.++++||+|+|.+|||||||+++|..+.|...+.+|.+.++....+..++..+++.||||+|+++|..+...++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
++|||++++++|+.+..|+..+.....+++|++||+||+|+.+.+.++.++++.++.++++.|+++||++|.||+++|+.
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999999888888999999999999998999999999999999999999999999999999999
Q ss_pred HHHHcCCCccccccccccccccccccccCCCCCCCCCCCCCCC
Q 028507 166 IAAALPGMETLSSTKQEEMVDVNLRSTTGNASQSQSQSSGCSC 208 (208)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 208 (208)
|++.+.+........+.....+...... .++..+++|||
T Consensus 170 i~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~C~C 208 (216)
T 4dkx_A 170 VAAALPGMESTQDRSREDMIDIKLEKPQ----EQPVSEGGCSC 208 (216)
T ss_dssp HHHHC--------------------------------------
T ss_pred HHHHHHhhhcccccccccccccccCCCC----CCCCCCCCCce
Confidence 9999977655544444333333322221 12344577777
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=8.7e-38 Score=229.10 Aligned_cols=173 Identities=38% Similarity=0.625 Sum_probs=156.3
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhcc
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|++ .....+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++.
T Consensus 1 M~~-~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (206)
T 2bcg_Y 1 MNS-EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR 79 (206)
T ss_dssp --C-CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred CCc-ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence 554 2356799999999999999999999999998888888888888888888988899999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
.+|++|+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 159 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE 159 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999999999999999999988777789999999999998877888888999999999999999999999999
Q ss_pred HHHHHHHHHcCCCc
Q 028507 161 PLFRKIAAALPGME 174 (208)
Q Consensus 161 ~~~~~l~~~~~~~~ 174 (208)
++|++|.+.+.+..
T Consensus 160 ~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 160 DAFLTMARQIKESM 173 (206)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999886543
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.2e-36 Score=222.92 Aligned_cols=172 Identities=39% Similarity=0.647 Sum_probs=148.7
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhcc
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|+.. ..+.++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..++.
T Consensus 1 M~~~-~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 79 (207)
T 1vg8_A 1 MTSR-KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79 (207)
T ss_dssp -------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGT
T ss_pred CCcc-cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHh
Confidence 4443 356799999999999999999999999988888888888888888888888889999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-hcCCeEEEeecCC
Q 028507 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKA 155 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~ 155 (208)
.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+. .+....++...++. ..+++++++||++
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (207)
T 1vg8_A 80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKE 158 (207)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 99999999999999999999999998877653 468999999999997 45566777888877 6678999999999
Q ss_pred CCChHHHHHHHHHHcCCCc
Q 028507 156 GFNIKPLFRKIAAALPGME 174 (208)
Q Consensus 156 ~~~i~~~~~~l~~~~~~~~ 174 (208)
|.|++++|++|.+.+.+..
T Consensus 159 g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 159 AINVEQAFQTIARNALKQE 177 (207)
T ss_dssp TBSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999886544
No 4
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-35 Score=218.60 Aligned_cols=170 Identities=33% Similarity=0.639 Sum_probs=146.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45699999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766779999999999998877888889999999999999999999999999999999
Q ss_pred HHHcCCCccc
Q 028507 167 AAALPGMETL 176 (208)
Q Consensus 167 ~~~~~~~~~~ 176 (208)
.+.+.+....
T Consensus 171 ~~~i~~~~~~ 180 (223)
T 3cpj_B 171 INTIYQKVSK 180 (223)
T ss_dssp HHHHTTCC--
T ss_pred HHHHHHHhhh
Confidence 9988755443
No 5
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.5e-34 Score=206.25 Aligned_cols=170 Identities=39% Similarity=0.739 Sum_probs=153.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
...+.+||+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34678999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
+|+|||++++.+++.+..|+..+.....+++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999988788888999999999999999999999999999999
Q ss_pred HHHHHcCCCc
Q 028507 165 KIAAALPGME 174 (208)
Q Consensus 165 ~l~~~~~~~~ 174 (208)
+|.+.+.+.+
T Consensus 168 ~l~~~~~~~~ 177 (181)
T 2efe_B 168 EIARRLPRVQ 177 (181)
T ss_dssp HHHHTCC---
T ss_pred HHHHHHHhcC
Confidence 9999886543
No 6
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=5.7e-35 Score=213.78 Aligned_cols=167 Identities=32% Similarity=0.568 Sum_probs=149.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.++.++|+|+|++|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++.+..++..++..+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 45789999999999999999999999988777777776444 45667788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
++|||+++++++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999887653 5799999999999988888888999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q 028507 165 KIAAALPGM 173 (208)
Q Consensus 165 ~l~~~~~~~ 173 (208)
+|.+.+.+.
T Consensus 170 ~l~~~i~~~ 178 (206)
T 2bov_A 170 DLMREIRAR 178 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999988654
No 7
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=2.6e-34 Score=203.89 Aligned_cols=166 Identities=40% Similarity=0.794 Sum_probs=153.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
++.+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.++..+..|+..+.....+++|+++|+||+|+.+.+....++...++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988777789999999999998777788888999999999999999999999999999999
Q ss_pred HHHcCC
Q 028507 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1r2q_A 164 AKKLPK 169 (170)
T ss_dssp HHTSCC
T ss_pred HHHHhh
Confidence 988753
No 8
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3e-34 Score=203.52 Aligned_cols=166 Identities=43% Similarity=0.784 Sum_probs=152.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
++.+||+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 35799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc---cCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK---RQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 163 (208)
+|||++++.++..+..|+..+......++|+++|+||+|+.+. +.+...+...++...+++++++||+++.|++++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887778999999999999765 6677888888999999999999999999999999
Q ss_pred HHHHHHcCC
Q 028507 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
++|.+.+.+
T Consensus 161 ~~l~~~i~~ 169 (170)
T 1ek0_A 161 LGIGEKIPL 169 (170)
T ss_dssp HHHHTTSCC
T ss_pred HHHHHHHhh
Confidence 999987753
No 9
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2.9e-34 Score=205.39 Aligned_cols=167 Identities=34% Similarity=0.642 Sum_probs=153.8
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
...+.+||+|+|.+|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 34567999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++++.++..++++++++||+++.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999988788888899999999999999999999999999999
Q ss_pred HHHHHcC
Q 028507 165 KIAAALP 171 (208)
Q Consensus 165 ~l~~~~~ 171 (208)
+|.+.+.
T Consensus 171 ~l~~~i~ 177 (179)
T 1z0f_A 171 EAAKKIY 177 (179)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998774
No 10
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.4e-34 Score=209.62 Aligned_cols=168 Identities=36% Similarity=0.695 Sum_probs=150.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
...+.+||+|+|++|+|||||+++|.++.+.....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 96 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence 34678999999999999999999999999888778888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
+|+|||++++++++.+..|+..+......++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|+
T Consensus 97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999988778888899999999999999999999999999999
Q ss_pred HHHHHcCC
Q 028507 165 KIAAALPG 172 (208)
Q Consensus 165 ~l~~~~~~ 172 (208)
+|.+.+.+
T Consensus 177 ~l~~~i~~ 184 (191)
T 2a5j_A 177 NTAKEIYR 184 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 11
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.6e-34 Score=207.13 Aligned_cols=168 Identities=35% Similarity=0.629 Sum_probs=154.7
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 35679999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
|+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+...+...++...+++++++||+++.|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999998877778999999999999877788888999999999999999999999999999999
Q ss_pred HHHHcCCC
Q 028507 166 IAAALPGM 173 (208)
Q Consensus 166 l~~~~~~~ 173 (208)
|.+.+.+.
T Consensus 167 l~~~~~~~ 174 (186)
T 2bme_A 167 CARKILNK 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888643
No 12
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=8.2e-34 Score=201.37 Aligned_cols=167 Identities=38% Similarity=0.717 Sum_probs=154.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.++.+||+|+|++|+|||||+++|.+..+.....++.+.+.......+.+..+.+.+||+||++.+...+..++..+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 35679999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
|+|||++++.++..+..|+..+.....+.+|+++|+||+|+.+.+++..++...++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998877778999999999999887888888999999999999999999999999999999
Q ss_pred HHHHcCC
Q 028507 166 IAAALPG 172 (208)
Q Consensus 166 l~~~~~~ 172 (208)
|.+.+.+
T Consensus 163 i~~~i~~ 169 (170)
T 1z0j_A 163 ISRRIPS 169 (170)
T ss_dssp HHHHCCC
T ss_pred HHHHHhc
Confidence 9988753
No 13
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.7e-34 Score=209.16 Aligned_cols=166 Identities=40% Similarity=0.672 Sum_probs=153.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35699999999999999999999999998888889888888888889998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++++.++...+++++++||++|.|++++|++|
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988777789999999999998878888889999999999999999999999999999999
Q ss_pred HHHcCC
Q 028507 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 184 ~~~i~~ 189 (201)
T 2ew1_A 184 ACRLIS 189 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 14
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=4.1e-35 Score=210.87 Aligned_cols=167 Identities=40% Similarity=0.701 Sum_probs=124.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45799999999999999999999998888778888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++++.++..++++++++||+++.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988766789999999999998877888899999999999999999999999999999999
Q ss_pred HHHcCCC
Q 028507 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
.+.+.+.
T Consensus 166 ~~~i~~~ 172 (183)
T 2fu5_C 166 ARDIKAK 172 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988643
No 15
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=4.6e-34 Score=206.56 Aligned_cols=166 Identities=37% Similarity=0.694 Sum_probs=152.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+|+|++|+|||||+++|.++.+...+.++.+.++....+...+..+.+.+||+||++.+...+..++..+|++|
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 45799999999999999999999999988887888888887788888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++++.++..++++++++||+++.|++++|++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988766779999999999998878888888999999999999999999999999999999
Q ss_pred HHHcCC
Q 028507 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 180 ~~~i~~ 185 (189)
T 2gf9_A 180 VDVICE 185 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988753
No 16
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=2.1e-34 Score=204.56 Aligned_cols=166 Identities=38% Similarity=0.676 Sum_probs=146.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999999988888888888888788888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..++.+.++...+++++++||+++.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999999887766679999999999998888888889999999999999999999999999999999
Q ss_pred HHHcCC
Q 028507 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1z08_A 164 CKRMIE 169 (170)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 987753
No 17
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=4.5e-34 Score=204.35 Aligned_cols=166 Identities=84% Similarity=1.267 Sum_probs=153.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
++++||+|+|++|+|||||+++|+++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 56799999999999999999999999988888888888888888889998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+...+...++...+++++++||+++.|++++|++|
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998888888889999999999999999999999999999999
Q ss_pred HHHcCC
Q 028507 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 172 ~~~~~~ 177 (179)
T 2y8e_A 172 AAALPG 177 (179)
T ss_dssp HHTCC-
T ss_pred HHHHhh
Confidence 988754
No 18
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=210.54 Aligned_cols=166 Identities=42% Similarity=0.727 Sum_probs=145.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45799999999999999999999999988778888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCChHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~ 165 (208)
+|||++++++++.+..|+..+......++|+++|+||+|+.+.+.+..++++.++..+++ +++++||+++.|++++|++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999999887777899999999999988778888999999999999 9999999999999999999
Q ss_pred HHHHcCC
Q 028507 166 IAAALPG 172 (208)
Q Consensus 166 l~~~~~~ 172 (208)
|.+.+.+
T Consensus 187 l~~~i~~ 193 (201)
T 2hup_A 187 VATELIM 193 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998854
No 19
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=6.6e-34 Score=206.61 Aligned_cols=167 Identities=39% Similarity=0.678 Sum_probs=156.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 34689999999999999999999999998888899998998899999998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++|++|
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 173 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 173 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988877789999999999998888888899999999999999999999999999999999
Q ss_pred HHHcCCC
Q 028507 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
.+.+.+.
T Consensus 174 ~~~i~~~ 180 (196)
T 3tkl_A 174 AAEIKKR 180 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988643
No 20
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.4e-34 Score=203.61 Aligned_cols=169 Identities=40% Similarity=0.680 Sum_probs=145.0
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
..+.+||+|+|++|+|||||+++|.++.+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 356799999999999999999999998884 4667888888887777888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|+
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999988888888888999999999999999999999999999
Q ss_pred HHHHHcCCCc
Q 028507 165 KIAAALPGME 174 (208)
Q Consensus 165 ~l~~~~~~~~ 174 (208)
+|.+.+.+..
T Consensus 167 ~l~~~~~~~~ 176 (180)
T 2g6b_A 167 AIAKELKRRS 176 (180)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 9999886543
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3.4e-34 Score=205.73 Aligned_cols=168 Identities=33% Similarity=0.467 Sum_probs=150.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|++|+|||||+++|.++.+...+.++.+.++ ...+..++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4679999999999999999999999888888888887666 677788888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..++++.++..++++++++||+++.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999876654 57999999999999888889999999999999999999999999999999999
Q ss_pred HHHHcCCCcc
Q 028507 166 IAAALPGMET 175 (208)
Q Consensus 166 l~~~~~~~~~ 175 (208)
|.+.+.+...
T Consensus 163 l~~~~~~~~~ 172 (181)
T 3t5g_A 163 IILEAEKMDG 172 (181)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHhcC
Confidence 9999876543
No 22
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=4.7e-34 Score=204.61 Aligned_cols=169 Identities=31% Similarity=0.472 Sum_probs=150.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
+.++.++|+|+|.+|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..++..+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 3467899999999999999999999999888877787776654 667788888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 163 (208)
+++|||+++++++..+..|+..+... ...++|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999999999999999988544 34679999999999998888888889999999999999999999999999999
Q ss_pred HHHHHHcCCCc
Q 028507 164 RKIAAALPGME 174 (208)
Q Consensus 164 ~~l~~~~~~~~ 174 (208)
++|.+.+.+..
T Consensus 164 ~~l~~~~~~~~ 174 (181)
T 2fn4_A 164 EQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999886443
No 23
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.5e-34 Score=206.02 Aligned_cols=167 Identities=38% Similarity=0.732 Sum_probs=152.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|++|+|||||+++|.++.+.....++.+.++....+..++..+.+.+||+||++.+...+..++..+|++|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 56899999999999999999999999988778888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|++|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988776779999999999998777888899999999999999999999999999999999
Q ss_pred HHHcCCC
Q 028507 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
.+.+.+.
T Consensus 181 ~~~i~~~ 187 (192)
T 2fg5_A 181 SRQIPPL 187 (192)
T ss_dssp HHTCC--
T ss_pred HHHHHhh
Confidence 9988543
No 24
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=5.3e-34 Score=206.54 Aligned_cols=172 Identities=35% Similarity=0.588 Sum_probs=151.7
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeE-EEEEEECCE---------EEEEEEEEcCCchh
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL-SKTMYLEDR---------TVRLQLWDTAGQER 70 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~G~~~ 70 (208)
|++....+.+||+|+|++|+|||||+++|.++.+...+.++.+.++. ...+..++. .+.+.+||+||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 55555667899999999999999999999999988888888887776 556666654 68999999999999
Q ss_pred hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEE
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI 149 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (208)
+...+..+++.+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++..++++++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999999999999987765 6799999999999988778888899999999999999
Q ss_pred EeecCCCCChHHHHHHHHHHcCC
Q 028507 150 ETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
++||+++.|++++|++|.+.+.+
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998854
No 25
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.1e-33 Score=203.40 Aligned_cols=167 Identities=29% Similarity=0.517 Sum_probs=151.0
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCc
Q 028507 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
....+.+||+|+|++|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3456789999999999999999999999988888888877666 677788888889999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecC-CCCChHH
Q 028507 84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK-AGFNIKP 161 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~-~~~~i~~ 161 (208)
++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++++.++..++++++++||+ ++.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~ 171 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK 171 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence 9999999999999999999999987644 4679999999999998888899999999999999999999999 9999999
Q ss_pred HHHHHHHHcC
Q 028507 162 LFRKIAAALP 171 (208)
Q Consensus 162 ~~~~l~~~~~ 171 (208)
+|++|.+.+.
T Consensus 172 l~~~l~~~i~ 181 (183)
T 3kkq_A 172 TFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 26
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.3e-34 Score=203.95 Aligned_cols=168 Identities=38% Similarity=0.673 Sum_probs=152.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999999988888888888888888999998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.++..+..|+..+.... +++|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|++|
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999997765 479999999999998888888899999999999999999999999999999999
Q ss_pred HHHcCCCcc
Q 028507 167 AAALPGMET 175 (208)
Q Consensus 167 ~~~~~~~~~ 175 (208)
.+.+.+...
T Consensus 166 ~~~~~~~~~ 174 (181)
T 3tw8_B 166 TELVLRAKK 174 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 998865443
No 27
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5e-34 Score=207.00 Aligned_cols=167 Identities=35% Similarity=0.662 Sum_probs=145.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
.....+||+|+|.+|+|||||+++|.++.+.....++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34568999999999999999999999999887888888888888888888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhc-CCeEEEeecCCCCChHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~ 163 (208)
+|+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..++++.++... +++++++||++|.|++++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999999998877778999999999999887888888888888875 7899999999999999999
Q ss_pred HHHHHHcC
Q 028507 164 RKIAAALP 171 (208)
Q Consensus 164 ~~l~~~~~ 171 (208)
++|.+.+.
T Consensus 182 ~~l~~~i~ 189 (192)
T 2il1_A 182 LKLVDDIL 189 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 28
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-33 Score=206.41 Aligned_cols=166 Identities=35% Similarity=0.656 Sum_probs=152.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+|+|++|+|||||+++|++..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45699999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988776779999999999998878888889999999999999999999999999999999
Q ss_pred HHHcCC
Q 028507 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 166 ~~~i~~ 171 (203)
T 1zbd_A 166 VDVICE 171 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 29
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.1e-33 Score=204.49 Aligned_cols=166 Identities=35% Similarity=0.613 Sum_probs=148.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh-hchhhhccCCcE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSV 84 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~ 84 (208)
.++.+||+|+|.+|+|||||+++|.++.+.....++.+.++....+.+++..+.+.+||+||++.+. .++..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 4567999999999999999999999999988888888888888888888888999999999999988 788889999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCC---CChH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG---FNIK 160 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~---~~i~ 160 (208)
+|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+++..++.+.++..++++++++||+++ .++.
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999998775 467999999999999888888889999999999999999999999 9999
Q ss_pred HHHHHHHHHcC
Q 028507 161 PLFRKIAAALP 171 (208)
Q Consensus 161 ~~~~~l~~~~~ 171 (208)
++|++|.+.+.
T Consensus 177 ~l~~~l~~~i~ 187 (189)
T 1z06_A 177 AIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 30
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=5.6e-34 Score=203.86 Aligned_cols=169 Identities=33% Similarity=0.500 Sum_probs=149.8
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECC-EEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
..+.+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+.+++ ..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 46789999999999999999999999988777777887778778888876 57899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERG--SDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 161 (208)
+|+|||++++++++.+..|+..+..... ...| +++|+||+|+.+.+.+..+++..++..++++++++||++|.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999998876532 2355 899999999988778888899999999999999999999999999
Q ss_pred HHHHHHHHcCCCc
Q 028507 162 LFRKIAAALPGME 174 (208)
Q Consensus 162 ~~~~l~~~~~~~~ 174 (208)
+|++|.+.+.+..
T Consensus 163 l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 163 CFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhh
Confidence 9999999887654
No 31
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.7e-34 Score=208.01 Aligned_cols=167 Identities=36% Similarity=0.651 Sum_probs=143.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+...++..++...+++++++||++|.|++++|++|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988777789999999999998777888889999999999999999999999999999999
Q ss_pred HHHcCCC
Q 028507 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
.+.+.+.
T Consensus 183 ~~~i~~~ 189 (200)
T 2o52_A 183 ARTILNK 189 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988643
No 32
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=205.00 Aligned_cols=166 Identities=31% Similarity=0.632 Sum_probs=152.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+.+..+.+.|||+||++.+...+..++..+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+...++..++...+++++++||+++.|++++|++|
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987766789999999999998877788889999999999999999999999999999999
Q ss_pred HHHcCC
Q 028507 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 183 ~~~i~~ 188 (193)
T 2oil_A 183 LKEIFA 188 (193)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987753
No 33
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=7.5e-34 Score=206.61 Aligned_cols=168 Identities=26% Similarity=0.372 Sum_probs=144.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh-chhhhccCCc
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSS 83 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d 83 (208)
.....+||+|+|.+|||||||+++|.+........++++.+.....+.+++..+.+.+||++|++.+.. +...+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 345679999999999999999999986655444455666666677778889889999999999987765 6777889999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 028507 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPL 162 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 162 (208)
++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+..++++.++..++++++++||+++.|++++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999999877654 57999999999999887888888999999999999999999999999999
Q ss_pred HHHHHHHcCC
Q 028507 163 FRKIAAALPG 172 (208)
Q Consensus 163 ~~~l~~~~~~ 172 (208)
|++|++.+.+
T Consensus 179 f~~l~~~i~~ 188 (195)
T 3cbq_A 179 FEGAVRQIRL 188 (195)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 34
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.7e-33 Score=199.41 Aligned_cols=164 Identities=36% Similarity=0.633 Sum_probs=150.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+.+.+..++++.++...+++++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999999987766 569999999999998877888889999999999999999999999999999999
Q ss_pred HHHcC
Q 028507 167 AAALP 171 (208)
Q Consensus 167 ~~~~~ 171 (208)
.+.+.
T Consensus 162 ~~~~~ 166 (168)
T 1z2a_A 162 AEKHL 166 (168)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98764
No 35
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.2e-33 Score=200.50 Aligned_cols=164 Identities=39% Similarity=0.740 Sum_probs=143.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
|||++++.++..+..|+..+......++|+++|+||+|+ ..+....++...++..++++++++||+++.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999998887778999999999999 4556678888889999999999999999999999999999
Q ss_pred HHcCC
Q 028507 168 AALPG 172 (208)
Q Consensus 168 ~~~~~ 172 (208)
+.+.+
T Consensus 161 ~~~~~ 165 (170)
T 1g16_A 161 KLIQE 165 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 36
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=4.5e-34 Score=210.17 Aligned_cols=172 Identities=31% Similarity=0.504 Sum_probs=145.0
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCC
Q 028507 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (208)
+++..+.+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..++.++
T Consensus 3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 81 (212)
T 2j0v_A 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA 81 (212)
T ss_dssp CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTC
T ss_pred CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCC
Confidence 34556789999999999999999999999988777777776444 45566777788999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcccC--------CCHHHHHHHHHhcCC-eEEEee
Q 028507 83 SVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--------VSIEEGEAKSRELNV-MFIETS 152 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~s 152 (208)
|++|+|||++++++++.+. .|+..+.... +++|+++|+||+|+.+.+. +...++..++..+++ +++++|
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS 160 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence 9999999999999999986 7988887765 4799999999999876543 367888889998896 999999
Q ss_pred cCCCCChHHHHHHHHHHcCCCccc
Q 028507 153 AKAGFNIKPLFRKIAAALPGMETL 176 (208)
Q Consensus 153 a~~~~~i~~~~~~l~~~~~~~~~~ 176 (208)
|++|.|++++|++|.+.+.+....
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHCC---
T ss_pred CCCCCCHHHHHHHHHHHHhhhhhh
Confidence 999999999999999988765443
No 37
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=2.8e-33 Score=198.08 Aligned_cols=164 Identities=29% Similarity=0.543 Sum_probs=145.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
|+.+||+++|++|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++.+..++..++..+|+++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 4679999999999999999999999988777777776544 455667777889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhc-CCeEEEeecCCCCChHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~~~~~ 164 (208)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++..+ +++++++||++|.|++++|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 9999999999999999999887754 357999999999999888888888889998887 78999999999999999999
Q ss_pred HHHHHcC
Q 028507 165 KIAAALP 171 (208)
Q Consensus 165 ~l~~~~~ 171 (208)
+|.+.+.
T Consensus 160 ~l~~~i~ 166 (167)
T 1c1y_A 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998764
No 38
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=203.60 Aligned_cols=164 Identities=26% Similarity=0.414 Sum_probs=142.2
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ .....+++..+.+.|||++|++.+..+ ..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 46789999999999999999999999998887788877555 455677888899999999999988775 5688999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeec-CCCCChHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA-KAGFNIKP 161 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa-~~~~~i~~ 161 (208)
|+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++..++++++++|| +++.|+++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 999999999999999999999877642 57999999999999887888899999999999999999999 89999999
Q ss_pred HHHHHHHHcC
Q 028507 162 LFRKIAAALP 171 (208)
Q Consensus 162 ~~~~l~~~~~ 171 (208)
+|++|.+.+.
T Consensus 176 lf~~l~~~i~ 185 (187)
T 3c5c_A 176 VFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 39
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=4.2e-33 Score=197.12 Aligned_cols=165 Identities=32% Similarity=0.576 Sum_probs=144.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
+++.+||+++|++|+|||||+++|.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 1 S~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 79 (168)
T 1u8z_A 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 79 (168)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEE
Confidence 36789999999999999999999999988777777666444 45567788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
++|||+++++++..+..|+..+..... .++|+++|+||+|+.+.+++..+++..++..++++++++||+++.|++++|+
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T 1u8z_A 80 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFF 159 (168)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 999999999999999999999887664 5799999999999988778888999999999999999999999999999999
Q ss_pred HHHHHcC
Q 028507 165 KIAAALP 171 (208)
Q Consensus 165 ~l~~~~~ 171 (208)
+|.+.+.
T Consensus 160 ~l~~~i~ 166 (168)
T 1u8z_A 160 DLMREIR 166 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 40
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-34 Score=208.34 Aligned_cols=166 Identities=36% Similarity=0.671 Sum_probs=153.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|.++.+.....++.+.+.....+..++..+.+.|||+||++.+..++..+++.+|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 35799999999999999999999999988888888888888888888877789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++++++.+..|+..+......++|+++|+||+|+.+.+....++.+.++..++++++++||++|.|++++|++|
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988777789999999999998888888999999999999999999999999999999999
Q ss_pred HHHcCC
Q 028507 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 181 ~~~i~~ 186 (191)
T 3dz8_A 181 VDAICD 186 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988753
No 41
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=8e-33 Score=197.69 Aligned_cols=165 Identities=38% Similarity=0.622 Sum_probs=145.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+|+|++|+|||||+++|.++.+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 45799999999999999999999999988888888888888888888998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-hcCCeEEEeecCCCCChHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~sa~~~~~i~~ 161 (208)
+|||++++.++..+..|+..+..... .++|+++|+||+|+. .+....+++..++. ..+++++++||++|.|+++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 99999999999999999999877654 678999999999997 55667888888888 5678999999999999999
Q ss_pred HHHHHHHHcCC
Q 028507 162 LFRKIAAALPG 172 (208)
Q Consensus 162 ~~~~l~~~~~~ 172 (208)
+|++|.+.+.+
T Consensus 164 l~~~l~~~~~~ 174 (177)
T 1wms_A 164 AFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 42
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=205.10 Aligned_cols=166 Identities=39% Similarity=0.635 Sum_probs=139.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 45799999999999999999999999987777888888888888888998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC------cccCCCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV------EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
+|||++++.++..+..|+..+......++|+++|+||+|+. ..+.+..++++.++...+++++++||++|.|++
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 185 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV 185 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHH
Confidence 99999999999999999999988776779999999999996 346677888889999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028507 161 PLFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
++|++|.+.+.+
T Consensus 186 el~~~l~~~i~~ 197 (199)
T 2p5s_A 186 EAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 43
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-33 Score=202.53 Aligned_cols=166 Identities=30% Similarity=0.491 Sum_probs=144.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...++|+|+|.+|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+..++..++..+|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 4569999999999999999999999988777777766443 345567788889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+ +.....+...++..++++++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999988888876543 4689999999999865 55677888888889999999999999999999999
Q ss_pred HHHHHcCCCc
Q 028507 165 KIAAALPGME 174 (208)
Q Consensus 165 ~l~~~~~~~~ 174 (208)
+|.+.+.+..
T Consensus 164 ~l~~~~~~~~ 173 (199)
T 2gf0_A 164 ELLTLETRRN 173 (199)
T ss_dssp HHHHHCSSSC
T ss_pred HHHHHHhhhh
Confidence 9999886543
No 44
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.6e-34 Score=207.14 Aligned_cols=169 Identities=32% Similarity=0.471 Sum_probs=144.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ......++..+.+.+||+||++.+..++..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 35689999999999999999999999998877777777555 55556666678899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 164 (208)
|+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++|+
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999999877643 5689999999999988888999999999999999999999999999999999
Q ss_pred HHHHHcCCCcc
Q 028507 165 KIAAALPGMET 175 (208)
Q Consensus 165 ~l~~~~~~~~~ 175 (208)
+|.+.+.+...
T Consensus 180 ~l~~~i~~~~~ 190 (201)
T 3oes_A 180 KVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHhhhh
Confidence 99998865543
No 45
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=4.3e-33 Score=201.00 Aligned_cols=166 Identities=29% Similarity=0.514 Sum_probs=143.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+++||+|+|++|+|||||+++|.++.+...+.++.. +.....+..++..+.+.+||+||++.+..++..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3579999999999999999999999888777666664 455566778888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
+|||++++.++..+..|+..+..... .++|+++|+||+|+. .+....++...++..++++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887543 679999999999986 4556778889999999999999999999999999999
Q ss_pred HHHHcCCCc
Q 028507 166 IAAALPGME 174 (208)
Q Consensus 166 l~~~~~~~~ 174 (208)
|.+.+.+..
T Consensus 160 l~~~~~~~~ 168 (189)
T 4dsu_A 160 LVREIRKHK 168 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999886544
No 46
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=5.5e-33 Score=200.28 Aligned_cols=163 Identities=19% Similarity=0.340 Sum_probs=141.8
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCc
Q 028507 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
...++++||+|+|++|+|||||+++|+++.+...+.++. ......+.+++..+.+.||||+|++.+. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 345789999999999999999999999999887776663 3344778888988999999999998776 678899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--cccCCCHHHHHHHHHhcC-CeEEEeecCCCCCh
Q 028507 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSRELN-VMFIETSAKAGFNI 159 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i 159 (208)
++++|||++++.+++.+..|+..+..... .++|+++|+||+|+. ..+.+..+++..++..++ +.++++||++|.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 99999999999999999999999987654 579999999999994 456788899999999987 89999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028507 160 KPLFRKIAAALPGM 173 (208)
Q Consensus 160 ~~~~~~l~~~~~~~ 173 (208)
+++|++|.+.+.+.
T Consensus 168 ~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 168 ERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887543
No 47
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=2.6e-33 Score=206.64 Aligned_cols=169 Identities=27% Similarity=0.472 Sum_probs=145.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
..++.+||+|+|.+|+|||||+++|.++.+...+.++.+.++ ...+.+++..+.+.|||++|++.+..++..+++++|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 346789999999999999999999999999888888887665 4556677778899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcCC-eEEE
Q 028507 85 AVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIE 150 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 150 (208)
+|+|||++++++++. +..|+..+.... +++|+++|+||+|+.++ +.+..+++..++..+++ ++++
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 999999999999999 799999988765 57999999999999763 67889999999999999 9999
Q ss_pred eecCCCCC-hHHHHHHHHHHcCCCcc
Q 028507 151 TSAKAGFN-IKPLFRKIAAALPGMET 175 (208)
Q Consensus 151 ~sa~~~~~-i~~~~~~l~~~~~~~~~ 175 (208)
+||++|.| ++++|++|.+.+.+...
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred eccCCCcccHHHHHHHHHHHHhccCc
Confidence 99999998 99999999998865443
No 48
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=2.9e-33 Score=206.69 Aligned_cols=186 Identities=27% Similarity=0.441 Sum_probs=156.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECC-EEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
...+||+|+|.+|+|||||+++|+++.+...+.++.+.+.........+ ..+.+.+||+||++.+..++..++..+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 4679999999999999999999999888777777777766666655544 347899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
|+|||++++.++..+..|+..+......++|+++|+||+|+.+.+.+...+...++...+++++++||++|.|++++|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999998887777999999999999887788888889999999999999999999999999999
Q ss_pred HHHHcCCCccccccccccccccccccc
Q 028507 166 IAAALPGMETLSSTKQEEMVDVNLRST 192 (208)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (208)
|.+.+.+....................
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (218)
T 4djt_A 169 LARIFTGRPDLIFVSNVNLEPTEVNYD 195 (218)
T ss_dssp HHHHHHCCTTCCBCSCCCCCBCCCCCC
T ss_pred HHHHHhcccccccccccCcCCCccccC
Confidence 999998877766655554444444333
No 49
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=199.95 Aligned_cols=168 Identities=38% Similarity=0.676 Sum_probs=151.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999999988888888888888888888988899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
+|||++++.++..+..|+..+..... .++|+++|+||+|+. .+.+..+++..++...+++++++||+++.|++++|++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 171 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE 171 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998876543 579999999999994 4556778888999999999999999999999999999
Q ss_pred HHHHcCCCcc
Q 028507 166 IAAALPGMET 175 (208)
Q Consensus 166 l~~~~~~~~~ 175 (208)
|.+.+.+...
T Consensus 172 l~~~~~~~~~ 181 (195)
T 1x3s_A 172 LVEKIIQTPG 181 (195)
T ss_dssp HHHHHHTSGG
T ss_pred HHHHHHhhhh
Confidence 9998875443
No 50
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=7.7e-34 Score=209.64 Aligned_cols=167 Identities=36% Similarity=0.614 Sum_probs=148.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCE----------EEEEEEEEcCCchhhhhchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQERFRSLIP 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~G~~~~~~~~~ 76 (208)
.+.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.|||+||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 45799999999999999999999999887777778777777766766655 68899999999999999999
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCC
Q 028507 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 155 (208)
.++..+|++|+|||++++.++..+..|+..+..... .++|+++|+||+|+.+.+.+...+++.++..++++++++||++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 999999999999999999999999999888765543 6799999999999988778888999999999999999999999
Q ss_pred CCChHHHHHHHHHHcCCC
Q 028507 156 GFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 156 ~~~i~~~~~~l~~~~~~~ 173 (208)
+.|++++|++|.+.+.+.
T Consensus 183 g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988643
No 51
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.4e-33 Score=198.13 Aligned_cols=165 Identities=34% Similarity=0.459 Sum_probs=134.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh--hhhchhhhccCCcE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLIPSYIRDSSV 84 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 84 (208)
++.+||+|+|++|+|||||+++|.+..+.... ++.+.+.....+.+++..+.+.+||+||++. +..+...++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 46799999999999999999999988775443 3455566677778888888999999999887 56667778899999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 163 (208)
+++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998887653 3569999999999998878888888888999999999999999999999999
Q ss_pred HHHHHHcCC
Q 028507 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
++|.+.+.+
T Consensus 161 ~~l~~~~~~ 169 (175)
T 2nzj_A 161 EGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 52
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=7.2e-33 Score=199.41 Aligned_cols=167 Identities=32% Similarity=0.573 Sum_probs=147.3
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
..++.+||+|+|++|+|||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+..++..++..+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 356789999999999999999999999988777777766444 4556778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 163 (208)
+|+|||+++++++..+..|+..+..... .++|+++|+||+|+.+.+.+...++..++..++++++++||+++.|++++|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999999887664 479999999999998877888899999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 028507 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
++|.+.+.+
T Consensus 173 ~~l~~~i~~ 181 (187)
T 2a9k_A 173 FDLMREIRA 181 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 53
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=6e-33 Score=196.15 Aligned_cols=164 Identities=34% Similarity=0.540 Sum_probs=146.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
|+++||+++|++|+|||||+++|.++.+...+.++.+. .....+.+++..+.+.+||+||++.+..++..++..+|+++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 46799999999999999999999999887777676653 34666778888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+.+++...+...++..++++++++||++|.|++++|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 99999999999999999998877653 57999999999999887888888889999999999999999999999999999
Q ss_pred HHHHcC
Q 028507 166 IAAALP 171 (208)
Q Consensus 166 l~~~~~ 171 (208)
|.+.+.
T Consensus 160 l~~~~~ 165 (167)
T 1kao_A 160 IVRQMN 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988763
No 54
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=5.9e-33 Score=196.95 Aligned_cols=163 Identities=26% Similarity=0.403 Sum_probs=133.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh-chhhhccCCcEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVV 87 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i~ 87 (208)
.+||+++|++|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+||++|++.+.. +...+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 48999999999999999999998777666666666777788888899899999999999998876 67777889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999999987664 479999999999998888899999999999999999999999999999999999
Q ss_pred HHHcC
Q 028507 167 AAALP 171 (208)
Q Consensus 167 ~~~~~ 171 (208)
.+.+.
T Consensus 162 ~~~i~ 166 (169)
T 3q85_A 162 VRQIR 166 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 55
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-32 Score=202.39 Aligned_cols=166 Identities=40% Similarity=0.723 Sum_probs=150.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 45799999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.++..+..|+..+......++|+++|+||+|+ ..+.....+...++..++++++++||+++.|++++|++|
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 176 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999998877677999999999999 556667788888899899999999999999999999999
Q ss_pred HHHcCCC
Q 028507 167 AAALPGM 173 (208)
Q Consensus 167 ~~~~~~~ 173 (208)
.+.+.+.
T Consensus 177 ~~~~~~~ 183 (213)
T 3cph_A 177 AKLIQEK 183 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887543
No 56
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-32 Score=199.69 Aligned_cols=169 Identities=27% Similarity=0.474 Sum_probs=145.5
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhcc
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 80 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 80 (208)
|++....+.+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++
T Consensus 10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 88 (194)
T 2atx_A 10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP 88 (194)
T ss_dssp CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence 3334444679999999999999999999999988777777776544 455667777789999999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcCC-
Q 028507 81 DSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV- 146 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~- 146 (208)
++|++|+|||+++++++..+. .|+..+.... +++|+++|+||+|+.+. +.+..+++..++..+++
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence 999999999999999999987 7888887764 46999999999999764 46778889999999998
Q ss_pred eEEEeecCCCCChHHHHHHHHHHcC
Q 028507 147 MFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 147 ~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
+++++||++|.|++++|++|.+.+.
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999988763
No 57
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-32 Score=199.44 Aligned_cols=167 Identities=32% Similarity=0.481 Sum_probs=145.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCc
Q 028507 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
+...+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..++..+|
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d 100 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGE 100 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence 3446789999999999999999999999998777777776544 45567788889999999999887 677788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCC-ChHH
Q 028507 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NIKP 161 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~-~i~~ 161 (208)
++|+|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..++..++++++++||+++. |+++
T Consensus 101 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 101 GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITE 180 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHH
Confidence 99999999999999999999998877653 679999999999998878888899999999999999999999999 9999
Q ss_pred HHHHHHHHcCC
Q 028507 162 LFRKIAAALPG 172 (208)
Q Consensus 162 ~~~~l~~~~~~ 172 (208)
+|++|.+.+.+
T Consensus 181 l~~~l~~~i~~ 191 (196)
T 2atv_A 181 IFYELCREVRR 191 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 58
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=4.5e-32 Score=197.90 Aligned_cols=163 Identities=38% Similarity=0.675 Sum_probs=145.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEE----------------------------
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------------------- 57 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 57 (208)
..+.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 3567999999999999999999999999888888888888877777776654
Q ss_pred ---------EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 58 ---------VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 58 ---------~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
+.+.|||+||++.+...+..+++.+|++|+|||++++.++..+..|+..+..... .|+++|+||+| ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cc
Confidence 7899999999999999999999999999999999999999999999999987654 99999999999 55
Q ss_pred ccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
.+....+++..++...+++++++||+++.|++++|++|.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 6677889999999999999999999999999999999988764
No 59
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=3.1e-32 Score=197.74 Aligned_cols=166 Identities=31% Similarity=0.503 Sum_probs=146.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++++|++|
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 46799999999999999999999999988787888776554 46678888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCcc--cCCCHHHHHHHHHhcCCe-EEEeecCCCCChHHH
Q 028507 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRELNVM-FIETSAKAGFNIKPL 162 (208)
Q Consensus 87 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~sa~~~~~i~~~ 162 (208)
+|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.+. +.+..+++..++..+++. ++++||++|.|++++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEV 178 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHH
Confidence 99999999999997 77888777554 57999999999999754 667889999999999997 999999999999999
Q ss_pred HHHHHHHcCCCc
Q 028507 163 FRKIAAALPGME 174 (208)
Q Consensus 163 ~~~l~~~~~~~~ 174 (208)
|++|.+.+.+..
T Consensus 179 ~~~l~~~i~~~~ 190 (194)
T 3reg_A 179 FEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHCSC
T ss_pred HHHHHHHHHhcC
Confidence 999999886543
No 60
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.7e-32 Score=195.26 Aligned_cols=162 Identities=21% Similarity=0.381 Sum_probs=137.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
..++.+||+|+|++|+|||||+++|.++.+.. +.++.+. .....+.+++..+.+.+||++|++. ..+++++|+
T Consensus 3 ~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~ 75 (178)
T 2iwr_A 3 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESE-QYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA 75 (178)
T ss_dssp CCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSS-EEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcce-eEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence 45678999999999999999999999998876 5666653 3456677888889999999999876 356788999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCC--cccCCCHHHHHHHHHhc-CCeEEEeecCCCCC
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGFN 158 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~piivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~ 158 (208)
+|+|||++++++++.+..|+..+.... .+++|+++|+||+|+. ..+.+..+++..++... +++++++||++|.|
T Consensus 76 ~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLN 155 (178)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence 999999999999999999877665543 3679999999999994 45677888888888876 68999999999999
Q ss_pred hHHHHHHHHHHcCCC
Q 028507 159 IKPLFRKIAAALPGM 173 (208)
Q Consensus 159 i~~~~~~l~~~~~~~ 173 (208)
++++|++|.+.+.+.
T Consensus 156 i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 156 VDRVFQEVAQKVVTL 170 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887543
No 61
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=3.3e-32 Score=195.88 Aligned_cols=167 Identities=30% Similarity=0.503 Sum_probs=145.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.++.+||+++|++|+|||||+++|.++.+...+.++.+... ...+.+++..+.+.+||+||++.+..++..++..+|++
T Consensus 2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 46789999999999999999999999988777777765443 45667788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcCC-eEEEe
Q 028507 86 VVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIET 151 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (208)
|+|||++++.++..+. .|+..+..... ++|+++|+||+|+.+. +.+..++...++..+++ +++++
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999987 78888877653 7999999999998653 46778888889999997 99999
Q ss_pred ecCCCCChHHHHHHHHHHcCCCc
Q 028507 152 SAKAGFNIKPLFRKIAAALPGME 174 (208)
Q Consensus 152 sa~~~~~i~~~~~~l~~~~~~~~ 174 (208)
||++|.|++++|++|.+.+.+..
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCCC
T ss_pred cCCCccCHHHHHHHHHHHHhccc
Confidence 99999999999999999886543
No 62
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=7.6e-33 Score=198.46 Aligned_cols=171 Identities=37% Similarity=0.608 Sum_probs=133.4
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC-CEEEEEEEEEcCCchhhhhchhhhc
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYI 79 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~ 79 (208)
|+.. ..+.++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.++ +..+.+.+||+||++.+...+..++
T Consensus 1 Ms~~-~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 79 (182)
T 1ky3_A 1 MSSR-KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFY 79 (182)
T ss_dssp -------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCS
T ss_pred CCcc-cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHh
Confidence 5442 3567999999999999999999999999888888888877777777776 5567899999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCc-ccCCCHHHHHHHHH-hcCCeEEEeec
Q 028507 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSA 153 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~sa 153 (208)
+.+|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+ .+.+...++..++. ..+++++++||
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 159 (182)
T 1ky3_A 80 RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSA 159 (182)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEec
Confidence 999999999999999999999999999877654 6799999999999954 34567788888887 55679999999
Q ss_pred CCCCChHHHHHHHHHHcCC
Q 028507 154 KAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~~ 172 (208)
++|.|++++|++|.+.+.+
T Consensus 160 ~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 160 KNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987753
No 63
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=2e-32 Score=193.71 Aligned_cols=161 Identities=30% Similarity=0.453 Sum_probs=122.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 88 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (208)
.+||+++|++|+|||||+++|.+...... .++.+.+. .....+++..+.+.+||++|++.+..++..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999987665322 23333333 45667888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
||++++++++.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999999987654 36799999999999988888999999999999999999999999999999999999
Q ss_pred HHcC
Q 028507 168 AALP 171 (208)
Q Consensus 168 ~~~~ 171 (208)
+.+.
T Consensus 160 ~~~~ 163 (166)
T 3q72_A 160 RQIR 163 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 64
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-32 Score=200.61 Aligned_cols=164 Identities=30% Similarity=0.452 Sum_probs=138.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC--CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-hhhchhhhccCCc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS 83 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 83 (208)
.+.+||+|+|.+|||||||+++|.+... ... .++++.+.....+.+++..+.+.+|||+|.+. +..+...+++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 4679999999999999999999996443 333 34456666677778889888999999999876 4556677788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 028507 84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPL 162 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 162 (208)
++|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++.+.++..++++++++||++|.|++++
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~el 193 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999999998887543 357999999999999877788888888888889999999999999999999
Q ss_pred HHHHHHHcC
Q 028507 163 FRKIAAALP 171 (208)
Q Consensus 163 ~~~l~~~~~ 171 (208)
|++|.+.+.
T Consensus 194 f~~l~~~i~ 202 (211)
T 2g3y_A 194 FEGIVRQVR 202 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
No 65
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-32 Score=192.64 Aligned_cols=165 Identities=29% Similarity=0.474 Sum_probs=144.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.+||+++|++|+|||||+++|.++.+...+.++.+.++ ......++..+.+.+||+||++.+..++..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 468999999999999999999999888777677766444 3455677778899999999999999989999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
|||++++.+++.+..|+..+..... +++|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999999988876543 46999999999999887888888888899999999999999999999999999
Q ss_pred HHHHcCCC
Q 028507 166 IAAALPGM 173 (208)
Q Consensus 166 l~~~~~~~ 173 (208)
|.+.+.+.
T Consensus 161 l~~~~~~~ 168 (172)
T 2erx_A 161 LLNLEKRR 168 (172)
T ss_dssp HHHTCCSS
T ss_pred HHHHHhhh
Confidence 99987543
No 66
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=7.1e-32 Score=195.09 Aligned_cols=167 Identities=28% Similarity=0.497 Sum_probs=134.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
+.++.++|+++|.+|+|||||+++|.++.+...+.++.+. .....+..++..+.+.+||+||++.+...+..++..+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 3577899999999999999999999998887666666553 334567778888899999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHH
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~ 163 (208)
+++|||++++.++..+..|+..+..... .++|+++|+||+|+.+ +....++++.++..++++++++||+++.|++++|
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998877654 5699999999999876 5567888899999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 028507 164 RKIAAALPGM 173 (208)
Q Consensus 164 ~~l~~~~~~~ 173 (208)
++|.+.+.+.
T Consensus 175 ~~l~~~~~~~ 184 (190)
T 3con_A 175 YTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988543
No 67
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=5.5e-33 Score=203.42 Aligned_cols=167 Identities=29% Similarity=0.476 Sum_probs=111.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC--cCCCCCCCccceeeEEEEEEECCE--EEEEEEEEcCCchhhhhchhhhccCC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (208)
.+.++|+|+|++|+|||||+++|.+. .+...+.++.+.+.....+.+++. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35689999999999999999999988 777777788777777777888776 78999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCc-ccCCCHHHHHHHHHhcCCeEEEeecCC-CC
Q 028507 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSRELNVMFIETSAKA-GF 157 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~-~~ 157 (208)
|++|+|||++++.+++.+..|+..+..... .++|+++|+||+|+.+ .+.+..+++..++..++++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988765 6799999999999987 778888999999999999999999999 99
Q ss_pred ChHHHHHHHHHHcCCC
Q 028507 158 NIKPLFRKIAAALPGM 173 (208)
Q Consensus 158 ~i~~~~~~l~~~~~~~ 173 (208)
|++++|++|.+.+.+.
T Consensus 178 gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 178 DADAPFLSIATTFYRN 193 (208)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987543
No 68
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=5.4e-32 Score=197.43 Aligned_cols=166 Identities=33% Similarity=0.495 Sum_probs=136.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|++|+|||||+++|.++.+...+.++++..+ ...+..++..+.+.+||+||++.+..++..++.++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 45689999999999999999999999888777777776443 55677788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcCC-eEEEe
Q 028507 86 VVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIET 151 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (208)
|+|||+++++++..+. .|+..+.... +++|+++|+||+|+.+. +.+..++...++..+++ +++++
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 9999999999999986 7888887765 47999999999999752 56778888999998887 99999
Q ss_pred ecCCCCChHHHHHHHHHHcCCC
Q 028507 152 SAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 152 sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
||+++.|++++|++|.+.+.+.
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999887543
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.7e-31 Score=194.96 Aligned_cols=163 Identities=33% Similarity=0.532 Sum_probs=142.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+|+|.+|+|||||+++|.++.+...+.++.+.++. ..+.+++..+.+.+||+||++.+..++..++..+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45799999999999999999999999988777777776554 34677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcCC-eEEEee
Q 028507 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 152 (208)
+|||+++++++..+ ..|+..+.... +++|+++|+||+|+.+. +.+..++...++...++ +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 67888777654 47999999999999765 45777888899999898 999999
Q ss_pred cCCCCChHHHHHHHHHHcC
Q 028507 153 AKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 153 a~~~~~i~~~~~~l~~~~~ 171 (208)
|++|.|++++|++|.+.+.
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 70
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=8e-32 Score=194.01 Aligned_cols=164 Identities=25% Similarity=0.486 Sum_probs=141.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..++..+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 35679999999999999999999999988777777776554 34566777788999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcC-CeEEEe
Q 028507 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIET 151 (208)
Q Consensus 86 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 151 (208)
|+|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+. +.+..+++..++..++ ++++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 161 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 161 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999999998 78888887654 57999999999999752 5677888999999888 699999
Q ss_pred ecC-CCCChHHHHHHHHHHcC
Q 028507 152 SAK-AGFNIKPLFRKIAAALP 171 (208)
Q Consensus 152 sa~-~~~~i~~~~~~l~~~~~ 171 (208)
||+ ++.|++++|+++.+.+.
T Consensus 162 Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 162 SALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp BTTTBHHHHHHHHHHHHHHHH
T ss_pred eecCCCcCHHHHHHHHHHHHh
Confidence 999 68999999999988764
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=3.2e-31 Score=186.96 Aligned_cols=163 Identities=28% Similarity=0.501 Sum_probs=142.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
|+.+||+++|++|+|||||+++|.++.+.....++.+. .....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i 79 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence 45789999999999999999999998887666666653 33556677888889999999999999988999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
+|||++++.++..+..|+..+..... .++|+++|+||+|+.+ +.....+...++..++++++++|++++.|++++|++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (166)
T 2ce2_X 80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT 158 (166)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999998877654 4799999999999876 456678888899999999999999999999999999
Q ss_pred HHHHcC
Q 028507 166 IAAALP 171 (208)
Q Consensus 166 l~~~~~ 171 (208)
|.+.+.
T Consensus 159 l~~~~~ 164 (166)
T 2ce2_X 159 LVREIR 164 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 72
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=8.8e-32 Score=197.15 Aligned_cols=163 Identities=25% Similarity=0.490 Sum_probs=141.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.|||++|++.+..++..++..+|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 4579999999999999999999999998877777776555 445667777889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcC-CeEEEee
Q 028507 87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s 152 (208)
+|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+. +.+..++++.++..++ +.++++|
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 183 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence 99999999999998 78888887664 57999999999999742 5577888899998888 6999999
Q ss_pred cC-CCCChHHHHHHHHHHcC
Q 028507 153 AK-AGFNIKPLFRKIAAALP 171 (208)
Q Consensus 153 a~-~~~~i~~~~~~l~~~~~ 171 (208)
|+ ++.|++++|+.|.+.+.
T Consensus 184 Ak~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 184 ALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred eccCCcCHHHHHHHHHHHHh
Confidence 99 68999999999988764
No 73
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=4.8e-32 Score=200.65 Aligned_cols=171 Identities=29% Similarity=0.541 Sum_probs=150.1
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCC
Q 028507 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS 82 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 82 (208)
.....+.+||+|+|.+|+|||||+++|+.+.+...+.++.+.+........++..+.+.+|||||++.+..++..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34456789999999999999999999988888777788888888888888899999999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 028507 83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPL 162 (208)
Q Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 162 (208)
|++|+|||++++.++..+..|+..+.... .++|+++|+||+|+.+.... .+...++...++.++++||+++.|++++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998765 46999999999999765432 2556677788999999999999999999
Q ss_pred HHHHHHHcCCCccc
Q 028507 163 FRKIAAALPGMETL 176 (208)
Q Consensus 163 ~~~l~~~~~~~~~~ 176 (208)
|++|.+.+.+.+..
T Consensus 166 ~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 166 FLWLARKLIGDPNL 179 (221)
T ss_dssp HHHHHHHHHTCTTC
T ss_pred HHHHHHHHHhCccc
Confidence 99999988665443
No 74
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=208.60 Aligned_cols=166 Identities=39% Similarity=0.686 Sum_probs=142.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.|||+||++.+...+..+++.+|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45699999999999999999999999988888888888888888889998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||++++.+++.+..|+..+......++|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++|++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999987776789999999999998877777777788899999999999999999999999999
Q ss_pred HHHcCC
Q 028507 167 AAALPG 172 (208)
Q Consensus 167 ~~~~~~ 172 (208)
.+.+.+
T Consensus 191 ~~~l~~ 196 (199)
T 3l0i_B 191 AAEIKK 196 (199)
T ss_dssp TTTTTT
T ss_pred HHHHHH
Confidence 988754
No 75
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=197.71 Aligned_cols=165 Identities=31% Similarity=0.518 Sum_probs=124.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|.++.+...+.++... .....+.+++..+.+.+||+||++.+..++..++.++|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFE-RYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCE-EEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccce-eEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 46799999999999999999999998887776776653 33556677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHhcCC-eEEEee
Q 028507 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 152 (208)
+|||++++.+++.+. .|+..+.... +++|+++|+||+|+.+.. .+...++..++..+++ +++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 189 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS 189 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence 999999999999986 7888887654 569999999999997653 5777888999999998 999999
Q ss_pred cCCCCChHHHHHHHHHHcCCC
Q 028507 153 AKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 153 a~~~~~i~~~~~~l~~~~~~~ 173 (208)
|++|.|++++|++|.+.+.+.
T Consensus 190 A~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 190 ARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999987543
No 76
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.9e-31 Score=193.92 Aligned_cols=165 Identities=32% Similarity=0.532 Sum_probs=138.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
.+..+||+|+|.+|+|||||+++|.++.+...+.++.+.... ..+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 356799999999999999999999999887777777765554 3467788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcCC-eEEEe
Q 028507 86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIET 151 (208)
Q Consensus 86 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 151 (208)
|+|||+++++++..+ ..|+..+.... +++|+++|+||+|+.+. +.+...+...++...++ .++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 999999999999998 67888777654 56999999999999764 45677888888988888 99999
Q ss_pred ecCCCCChHHHHHHHHHHcCC
Q 028507 152 SAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 152 sa~~~~~i~~~~~~l~~~~~~ 172 (208)
||++|.|++++|++|.+.+.+
T Consensus 180 SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHS
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998753
No 77
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.6e-32 Score=196.92 Aligned_cols=166 Identities=34% Similarity=0.530 Sum_probs=126.7
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCc
Q 028507 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
++..+.+||+++|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++++|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 34567899999999999999999999998887776666654332 22344556678899999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcccC----------CCHHHHHHHHHhcCC-eEEEe
Q 028507 84 VAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ----------VSIEEGEAKSRELNV-MFIET 151 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 151 (208)
++++|||++++.+++.+. .|+..+.... +++|+++|+||+|+.+.+. +...+...++..+++ +++++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999987 7888887765 4799999999999876543 467888889998897 99999
Q ss_pred ecCCCCChHHHHHHHHHHcC
Q 028507 152 SAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 152 sa~~~~~i~~~~~~l~~~~~ 171 (208)
||++|.|++++|++|.+.+.
T Consensus 161 Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998764
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=2.7e-31 Score=194.35 Aligned_cols=163 Identities=31% Similarity=0.513 Sum_probs=139.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|.+|+|||||+++|..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++..+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 35689999999999999999999999988777777765 44556667788888999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHhcCC-eEEEe
Q 028507 86 VVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIET 151 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 151 (208)
|+|||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.. .+...+...++..+++ +++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999986 7888887765 679999999999987643 3777888899999887 69999
Q ss_pred ecCCCCChHHHHHHHHHHc
Q 028507 152 SAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 152 sa~~~~~i~~~~~~l~~~~ 170 (208)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998765
No 79
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.98 E-value=1.3e-30 Score=189.00 Aligned_cols=164 Identities=30% Similarity=0.490 Sum_probs=135.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCc--CCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-hhhchhhhccCCc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS 83 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d 83 (208)
.+.+||+|+|.+|||||||+++|.+.. +... .++++.+.....+.+++..+.+.+||++|.+. +..+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999999643 3333 33455666667778889888999999999776 4556677788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHH
Q 028507 84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPL 162 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~ 162 (208)
++++|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999998887653 357999999999999877778888888888888999999999999999999
Q ss_pred HHHHHHHcC
Q 028507 163 FRKIAAALP 171 (208)
Q Consensus 163 ~~~l~~~~~ 171 (208)
|++|.+.+.
T Consensus 163 f~~l~~~~~ 171 (192)
T 2cjw_A 163 FEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=2.4e-31 Score=193.52 Aligned_cols=164 Identities=18% Similarity=0.257 Sum_probs=129.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCC-CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCc
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
+..+.+||+|+|.+|+|||||+++|.++.+.. .+.++.+... ..+.... +.+.||||||++.+..++..+++.+|
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 34578999999999999999999999999877 6777776433 3334444 78999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCcccCCCHHHHHHH------HHhcCCeEE
Q 028507 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG--------SDVIIVLVGNKTDLVEKRQVSIEEGEAK------SRELNVMFI 149 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~piivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~ 149 (208)
++|+|||+++++++..+..|+..+..... .++|+++|+||+|+.+... ..+.... +...+++++
T Consensus 89 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 166 (199)
T 4bas_A 89 AVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIF 166 (199)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEE
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEE
Confidence 99999999999999999999888865421 2699999999999976532 2222111 144677999
Q ss_pred EeecCCCCChHHHHHHHHHHcCCCc
Q 028507 150 ETSAKAGFNIKPLFRKIAAALPGME 174 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~~~~~ 174 (208)
++||+++.|++++|++|.+.+.+..
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 167 ASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EeeCCCccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999886543
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=4.6e-32 Score=196.88 Aligned_cols=165 Identities=22% Similarity=0.244 Sum_probs=132.9
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCC-----------CCCccceeeEEEEE-EECCEEEEEEEEEcCCchhhh
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-----------YQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~G~~~~~ 72 (208)
...+.+||+|+|++|+|||||++.+.+ .+... ..++.+.++....+ .+++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 345689999999999999999965554 44333 22344444433333 456677899999999999999
Q ss_pred hchhhhccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC
Q 028507 73 SLIPSYIRDSSVAVVVYDVA------SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV 146 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (208)
.++..+++++|++|+|||++ +.+++..+..|+..+. ....++|+++|+||+|+.+. ...+++..++..+++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCC
Confidence 99999999999999999999 5567777878877773 23367999999999998653 678889999999999
Q ss_pred -eEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 147 -MFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 147 -~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
+++++||++|.|++++|++|.+.+.+.
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999887543
No 82
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=7e-30 Score=184.70 Aligned_cols=162 Identities=19% Similarity=0.280 Sum_probs=130.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCc-CCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
..+.+||+|+|.+|+|||||+++|.+.. +...+.++.+ .....+.+++ +.+.+||+||++.+...+..++.++|+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 3568999999999999999999999887 5555666655 3444555555 679999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCC
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAG 156 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~ 156 (208)
+|+|||+++++++..+..|+..+..... .++|+++|+||+|+.+. ...++....+. ..+++++++||+++
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999999988876543 47999999999999653 34455555543 23568999999999
Q ss_pred CChHHHHHHHHHHcCCC
Q 028507 157 FNIKPLFRKIAAALPGM 173 (208)
Q Consensus 157 ~~i~~~~~~l~~~~~~~ 173 (208)
.|++++|++|.+.+.+.
T Consensus 172 ~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp BTHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999999988543
No 83
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=3.5e-29 Score=182.42 Aligned_cols=165 Identities=36% Similarity=0.698 Sum_probs=146.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+......++..++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46999999999999999999999999888888888888888888899988899999999999998888888899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
|||++++.++..+..|+..+........|+++++||+|+.+.+.....++..++...++.++++|++++.++.++|++|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999998998888766556789999999999987777788888999999999999999999999999999999
Q ss_pred HHcCC
Q 028507 168 AALPG 172 (208)
Q Consensus 168 ~~~~~ 172 (208)
+.+.+
T Consensus 164 ~~~~~ 168 (199)
T 2f9l_A 164 TEIYR 168 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 84
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.7e-30 Score=187.70 Aligned_cols=161 Identities=22% Similarity=0.325 Sum_probs=130.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|++|+|||||+++|.++.+...+.++.+.++.. +...+ +.+.+||+||++.+..++..++..+|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 457999999999999999999999998887777777765543 34444 77999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 160 (208)
+|||+++++++..+..|+..+.... ..++|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999999988886543 2579999999999996542 2233222221 234589999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028507 161 PLFRKIAAALPGM 173 (208)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (208)
++|++|.+.+.+.
T Consensus 174 ~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 174 ITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHTCC--
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987543
No 85
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=4.9e-29 Score=180.58 Aligned_cols=164 Identities=35% Similarity=0.687 Sum_probs=148.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+++...+..++..+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34689999999999999999999999988888899888888888889998888999999999998888888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 166 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l 166 (208)
+|||+++..+++.+..|+..+........|+++++||+|+.+.+.....++..++...++.++++|++++.+++++|++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999998889888876655678999999999998777777888899999999999999999999999999999
Q ss_pred HHHc
Q 028507 167 AAAL 170 (208)
Q Consensus 167 ~~~~ 170 (208)
.+.+
T Consensus 187 ~~~i 190 (191)
T 1oix_A 187 LTEI 190 (191)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=2.4e-30 Score=183.75 Aligned_cols=159 Identities=20% Similarity=0.319 Sum_probs=127.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.++|+|+|++|+|||||+++|.++.+.. +.++.+. ....+.+++ +.+.+||+||++.+...+..+++.+|++|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 56999999999999999999999888753 4455543 334455554 679999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHH-----HHhcCCeEEEeecCCCCChHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~sa~~~~~i~~ 161 (208)
|||+++++++..+..|+..+..... .++|+++|+||+|+.+... ..+.... +...+++++++||+++.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence 9999999999999888888765432 5799999999999976432 2222222 223456899999999999999
Q ss_pred HHHHHHHHcCCC
Q 028507 162 LFRKIAAALPGM 173 (208)
Q Consensus 162 ~~~~l~~~~~~~ 173 (208)
+|++|.+.+.+.
T Consensus 159 l~~~l~~~i~~~ 170 (171)
T 1upt_A 159 AMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhc
Confidence 999999987543
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1.4e-30 Score=183.81 Aligned_cols=156 Identities=21% Similarity=0.325 Sum_probs=123.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEE
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 89 (208)
+||+++|++|+|||||+++|.++.+.. +.++.+. ....+...+ +.+.+||+||++.+..++..++.++|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999888754 4555553 233444444 67999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCCCChHHHH
Q 028507 90 DVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 90 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~~~~ 163 (208)
|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999999999988876542 3579999999999996542 2233322221 234579999999999999999
Q ss_pred HHHHHHcCC
Q 028507 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999998753
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=9.9e-30 Score=185.25 Aligned_cols=157 Identities=22% Similarity=0.268 Sum_probs=123.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|++|+|||||+++|.++.+. .+.++.+.+ ...+.+++ +.+.+|||||++.+..++..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 56799999999999999999999988764 344554443 34555666 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-----------------cCCeE
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----------------LNVMF 148 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 148 (208)
+|||+++++++..+..|+..+.... ..++|+++|+||+|+.+ ....+++..++.. .++++
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 9999999999999999998886643 35799999999999965 4566777766553 24589
Q ss_pred EEeecCCCCChHHHHHHHHHHc
Q 028507 149 IETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 149 ~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
+++||++|.|++++|++|.+.+
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998764
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=2.5e-29 Score=181.95 Aligned_cols=156 Identities=23% Similarity=0.249 Sum_probs=127.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|++|+|||||+++|.++.+. .+.++.+. ....+.+++ +.+.+||+||++.+..++..+++.+|++|
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 46789999999999999999999988875 34455444 345566666 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh------------cCCeEEEeec
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA 153 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~sa 153 (208)
+|||++++++++.+..|+..+.... ..++|+++|+||+|+.+ ....++....+.. .+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 9999999999999999998886543 35799999999999965 4556666665543 3458999999
Q ss_pred CCCCChHHHHHHHHHH
Q 028507 154 KAGFNIKPLFRKIAAA 169 (208)
Q Consensus 154 ~~~~~i~~~~~~l~~~ 169 (208)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999999864
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=4.3e-29 Score=179.83 Aligned_cols=159 Identities=22% Similarity=0.334 Sum_probs=129.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|++|+|||||+++|.++. ...+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999888 55666666643 34444554 67999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 160 (208)
+|||++++++++.+..|+..+.... ..++|+++|+||+|+.+... ..+...... ..+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999999988886643 25799999999999966432 334333322 345689999999999999
Q ss_pred HHHHHHHHHcCC
Q 028507 161 PLFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
++|++|.+.+.+
T Consensus 169 ~l~~~l~~~i~~ 180 (186)
T 1ksh_A 169 PGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.5e-30 Score=183.81 Aligned_cols=164 Identities=20% Similarity=0.276 Sum_probs=126.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+|+|.+|+|||||+++|.++.+. .+.++.+.. ...+.+++ +.+.+||+||++++...+..++.++|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 46799999999999999999999988775 445555433 33444555 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 160 (208)
+|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+. ....+...... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999998887653 256999999999999653 33444444432 345689999999999999
Q ss_pred HHHHHHHHHcCCCcccc
Q 028507 161 PLFRKIAAALPGMETLS 177 (208)
Q Consensus 161 ~~~~~l~~~~~~~~~~~ 177 (208)
++|++|.+.+.......
T Consensus 167 ~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp HHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999886655443
No 92
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2.5e-30 Score=187.48 Aligned_cols=160 Identities=19% Similarity=0.336 Sum_probs=122.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEE
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 85 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 85 (208)
..+.+||+|+|++|+|||||+++|.++.+.. +.++.+ .....+...+ +.+.+||+||++.+...+..++..+|++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3568999999999999999999999887653 345544 3334445555 7899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCCCCh
Q 028507 86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNI 159 (208)
Q Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i 159 (208)
|+|||+++++++..+..|+..+.... ..++|+++|+||+|+.+.. ...+...... ..+++++++||++|.|+
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 99999999999999999988876543 2569999999999996542 2233322221 23457999999999999
Q ss_pred HHHHHHHHHHcCC
Q 028507 160 KPLFRKIAAALPG 172 (208)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (208)
+++|++|.+.+.+
T Consensus 179 ~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 179 YDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988753
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.3e-29 Score=181.99 Aligned_cols=158 Identities=20% Similarity=0.307 Sum_probs=125.0
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
...+.+||+|+|.+|+|||||+++|.++.+ ....++.+... ..+.+++ +.+.+||+||++.+...+..++..+|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 345789999999999999999999998887 44445554333 3444555 789999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HhcCCeEEEeecCCCCC
Q 028507 85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFN 158 (208)
Q Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~ 158 (208)
+|+|||+++++++..+..|+..+.... ..++|+++|+||+|+.+. ....+..... ...+++++++||++|.|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 169 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG 169 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence 999999999999999999888886543 356999999999999653 2344444433 22356899999999999
Q ss_pred hHHHHHHHHHH
Q 028507 159 IKPLFRKIAAA 169 (208)
Q Consensus 159 i~~~~~~l~~~ 169 (208)
++++|++|.+.
T Consensus 170 i~~l~~~l~~~ 180 (181)
T 2h17_A 170 LCQGLEWMMSR 180 (181)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999999764
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=2.8e-30 Score=185.97 Aligned_cols=166 Identities=21% Similarity=0.370 Sum_probs=123.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC--cCCCCCCCccceeeEEEEEEE---CCEEEEEEEEEcCCchhhhhchhhhccCCc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSS 83 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 83 (208)
.+||+|+|++|+|||||+++|.+. .+...+.++.+.++....+.+ ++..+.+.+||++|++.+..+...++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 455556777777766555443 234578999999999999998899999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC---HHHHHHHHHhcCCe----EEEeecCC
Q 028507 84 VAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS---IEEGEAKSRELNVM----FIETSAKA 155 (208)
Q Consensus 84 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~sa~~ 155 (208)
++++|||++++ .+++.+..|+..+.... ++.|+++|+||+|+.+.+.+. ......++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999987 57899999999887654 469999999999987654332 23345556666776 99999999
Q ss_pred CC-ChHHHHHHHHHHcCCCcc
Q 028507 156 GF-NIKPLFRKIAAALPGMET 175 (208)
Q Consensus 156 ~~-~i~~~~~~l~~~~~~~~~ 175 (208)
+. ++.++++.|.+.+.+...
T Consensus 161 ~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC--
T ss_pred CchhHHHHHHHHHHHHhcccc
Confidence 97 999999999988765443
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=3.1e-29 Score=180.07 Aligned_cols=159 Identities=22% Similarity=0.351 Sum_probs=125.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|++|+|||||+++|.+..+ ..+.++.+.. ...+.+++ +.+.+||+||++.+...+..++..+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4679999999999999999999998754 2344555533 33455554 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~ 160 (208)
+|||++++++++.+..|+..+.... ..++|+++|+||+|+.+... ..+..... ...+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 9999999999999988888775432 35799999999999976433 33333222 1234689999999999999
Q ss_pred HHHHHHHHHcCC
Q 028507 161 PLFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
++|++|.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=6e-30 Score=184.82 Aligned_cols=160 Identities=20% Similarity=0.294 Sum_probs=127.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+++|++|+|||||+++|..+.+.. +.++.+. ....+..++ +.+.+|||||++.+...+..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 568999999999999999999999877643 4455543 333445554 67999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HhcCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~sa~~~~~i~ 160 (208)
+|||+++++++..+..|+..+.... ..++|+++|+||+|+.+... ..+..... ...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999999988888876543 25799999999999965432 23322222 2335689999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028507 161 PLFRKIAAALPGM 173 (208)
Q Consensus 161 ~~~~~l~~~~~~~ 173 (208)
++|++|.+.+.+.
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988544
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=2.5e-28 Score=190.82 Aligned_cols=162 Identities=30% Similarity=0.491 Sum_probs=142.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
..++|+++|.+|+|||||+++|.++.+...+.++++. .....+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEE-EEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccc-eeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 4589999999999999999999999887777777654 345567788888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcc------------cCCCHHHHHHHHHhcCC-eEEEeec
Q 028507 88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSA 153 (208)
Q Consensus 88 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~sa 153 (208)
|||++++.++..+. .|+..+.... .++|+++|+||+|+.+. +.+...++..++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999986 7888887655 37999999999998653 56778889999999997 9999999
Q ss_pred CCCCChHHHHHHHHHHcC
Q 028507 154 KAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 154 ~~~~~i~~~~~~l~~~~~ 171 (208)
++|.|++++|+.|.+.+.
T Consensus 312 ~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999998764
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=2e-29 Score=183.27 Aligned_cols=163 Identities=17% Similarity=0.203 Sum_probs=120.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC-CEEEEEEEEEcCCchhhhhch---hhhcc
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLI---PSYIR 80 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~---~~~~~ 80 (208)
+..+.+||+|+|.+|||||||++++.+. +..................+. +..+.+.+||++|++.|.... ..+++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 3457899999999999999999987764 322222222222222232332 455789999999999987776 78899
Q ss_pred CCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc-------ccCCCHHHHHHHHH----hcCCe
Q 028507 81 DSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------KRQVSIEEGEAKSR----ELNVM 147 (208)
Q Consensus 81 ~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~-------~~~~~~~~~~~~~~----~~~~~ 147 (208)
++|++|+|||++++ +++..+..|+..+... .+++|+++|+||+|+.+ .+.+...+...++. ..++.
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS 173 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE
T ss_pred cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc
Confidence 99999999999987 6677777777776443 35799999999999865 23444555667777 66789
Q ss_pred EEEeecCCCCChHHHHHHHHHHc
Q 028507 148 FIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 148 ~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
++++||++ .|++++|+.|++.+
T Consensus 174 ~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 174 FYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEECTTS-THHHHHHHHHHHHT
T ss_pred eEEEEech-hhHHHHHHHHHHHh
Confidence 99999999 99999999998865
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=4.9e-29 Score=178.93 Aligned_cols=159 Identities=22% Similarity=0.332 Sum_probs=124.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.++|+++|++|+|||||+++|.++.+ ..+.++.+.. ...+.+++ +.+.+||+||++.+...+..++..+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999998777 4445555533 34445555 78999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-----cCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----LNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~ 160 (208)
+|||++++++++.+..|+..+.... ..++|+++|+||+|+.+. ....+....... .+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999888886653 367999999999998653 234444443322 24579999999999999
Q ss_pred HHHHHHHHHcCC
Q 028507 161 PLFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
++|++|.+.+.+
T Consensus 169 ~l~~~l~~~~~~ 180 (183)
T 1moz_A 169 EGLDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 100
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=1.1e-28 Score=174.66 Aligned_cols=155 Identities=17% Similarity=0.250 Sum_probs=118.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh------hchhhhcc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR 80 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~ 80 (208)
|+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||+..+. .+...++.
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 4568999999999999999999998876555556666665566666666 579999999988764 23344554
Q ss_pred --CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 81 --DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 81 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
++|++++|+|+++.+. ...|+..+.. .++|+++|+||+|+.+.+.+.. +...++..++++++++||++|.|
T Consensus 79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 79 NEKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMG 151 (165)
T ss_dssp HHCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBS
T ss_pred cCCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCC
Confidence 8999999999987543 3456666654 3599999999999866554432 35677778889999999999999
Q ss_pred hHHHHHHHHHHc
Q 028507 159 IKPLFRKIAAAL 170 (208)
Q Consensus 159 i~~~~~~l~~~~ 170 (208)
++++|++|.+.+
T Consensus 152 v~~l~~~l~~~~ 163 (165)
T 2wji_A 152 IEELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.3e-31 Score=194.61 Aligned_cols=162 Identities=31% Similarity=0.530 Sum_probs=135.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..++.++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4679999999999999999999998888766666665333 444556666788999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCccc------------CCCHHHHHHHHHhcCC-eEEEee
Q 028507 87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS 152 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 152 (208)
+|||++++.++..+. .|+..+.... +++|+++|+||+|+.+.. .+...+...++...++ +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999999986 7887776554 369999999999997543 4555667777888887 899999
Q ss_pred cCCCCChHHHHHHHHHHc
Q 028507 153 AKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 153 a~~~~~i~~~~~~l~~~~ 170 (208)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998754
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.6e-29 Score=189.78 Aligned_cols=165 Identities=18% Similarity=0.254 Sum_probs=122.9
Q ss_pred CCCCCceeEEEEcCC---------CCCHHHHHHHhhc---CcCCCCCCCcc-ceeeEEEE--------------EEECCE
Q 028507 4 VSALAKYKLVFLGDQ---------SVGKTSIITRFMY---DKFDNTYQATI-GIDFLSKT--------------MYLEDR 56 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~---------~~GKstli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~ 56 (208)
...++.+||+|+|.+ |||||||+++|++ ..+...+.+++ +.++.... ..+++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345678999999999 9999999999998 55555555554 33322111 113456
Q ss_pred EEEEEEEE-----------------------cCCchhhhhchhhhcc---------------------CCcEEEEEEeCC
Q 028507 57 TVRLQLWD-----------------------TAGQERFRSLIPSYIR---------------------DSSVAVVVYDVA 92 (208)
Q Consensus 57 ~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~ 92 (208)
.+.+.||| ++|++++..++..++. ++|++|+|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 68899999 6666666666666666 799999999999
Q ss_pred Ch--hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-cCCeEEEeecCCCCChHHHHHHHHH
Q 028507 93 SR--QSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 93 ~~--~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
++ ++++.+..|+..+... ...++|+++|+||+|+.+.+.+ .+.+.++.. .+++++++||+++.|++++|++|.+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 98 8999999999998765 3357999999999999655443 466667765 4789999999999999999999988
Q ss_pred Hc
Q 028507 169 AL 170 (208)
Q Consensus 169 ~~ 170 (208)
.+
T Consensus 252 ~l 253 (255)
T 3c5h_A 252 LI 253 (255)
T ss_dssp HH
T ss_pred Hh
Confidence 76
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=1.8e-27 Score=176.87 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=117.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch------h----hhhchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE------R----FRSLIP 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~------~----~~~~~~ 76 (208)
.+.++|+|+|.+|+|||||+++|++..+.....+..+.+.........+ ..+.||||||+. . +.. +.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 5679999999999999999999998877533334444444444445555 679999999983 2 222 23
Q ss_pred hhccCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHH---HHHHHHHhcC--CeEE
Q 028507 77 SYIRDSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELN--VMFI 149 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~ 149 (208)
.++..+|++|+|||++++.++. ....|+..+... ..++|+++|+||+|+.+.+.+... ....++...+ ++++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 4467889999999999887764 223455555433 236999999999999877666654 4556666776 7999
Q ss_pred EeecCCCCChHHHHHHHHHHcCCC
Q 028507 150 ETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
++||++|.|++++|++|.+.+.+.
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988544
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=9.7e-28 Score=171.36 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=121.2
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcE
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 84 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 84 (208)
...+.++|+|+|++|+|||||+++|.++.+...+.++.+.+.....+.+++ ..+.+|||||++.+..++..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 345679999999999999999999999988777666666666556666777 458899999999999999899999999
Q ss_pred EEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhc-------C--CeEEEee
Q 028507 85 AVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-------N--VMFIETS 152 (208)
Q Consensus 85 ~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~s 152 (208)
+|+|||++++ .+++.+ ......++|+++|+||+|+.+. ...+........ + ++++++|
T Consensus 82 ~i~v~d~~~~~~~~~~~~l-------~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVEAI-------NHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp EEEEEETTCCCCHHHHHHH-------HHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHH-------HHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 9999999873 333322 2222346999999999999653 223333333222 2 4899999
Q ss_pred cCCCCChHHHHHHHHHHcCCC
Q 028507 153 AKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 153 a~~~~~i~~~~~~l~~~~~~~ 173 (208)
|++|.|++++|++|.+.+...
T Consensus 152 a~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 152 AKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp SSSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHhhhhh
Confidence 999999999999999887543
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=2.9e-27 Score=173.95 Aligned_cols=161 Identities=21% Similarity=0.290 Sum_probs=113.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCE-EEEEEEEEcCCchhhhh-chhhhccCCcE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRS-LIPSYIRDSSV 84 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ 84 (208)
.+.+||+|+|++|+|||||+++|.++.+...+.++ +.+... +.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 45799999999999999999999998887665443 333333 455533 47899999999999987 78888999999
Q ss_pred EEEEEeCCChh-hHHHHHHHHH-HHHHh--cCCCCcEEEEEeCCCCCcccCCCH--HHHHH-------------------
Q 028507 85 AVVVYDVASRQ-SFLNTSKWID-EVRTE--RGSDVIIVLVGNKTDLVEKRQVSI--EEGEA------------------- 139 (208)
Q Consensus 85 ~i~v~d~~~~~-s~~~~~~~~~-~i~~~--~~~~~piivv~nK~D~~~~~~~~~--~~~~~------------------- 139 (208)
+|+|||+++.. ++.....++. .+... ...++|+++|+||+|+.+...... .....
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 4555544444 33332 245699999999999976543111 01111
Q ss_pred -------------HHH-hc--CCeEEEeecCCC------CChHHHHHHHHHHc
Q 028507 140 -------------KSR-EL--NVMFIETSAKAG------FNIKPLFRKIAAAL 170 (208)
Q Consensus 140 -------------~~~-~~--~~~~~~~sa~~~------~~i~~~~~~l~~~~ 170 (208)
++. .+ ++.++++||++| .|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 111 11 568999999999 99999999998764
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=4e-27 Score=182.26 Aligned_cols=161 Identities=22% Similarity=0.336 Sum_probs=127.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCC---CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh-----hhchhhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYI 79 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~ 79 (208)
..+||+++|++|+|||||+++|+++... ..+.+|.+... ..+.+.+ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999987432 13444444433 3444433 478999999999988 67788889
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCc--ccC----CCHHHHHHHHHhcC---CeE
Q 028507 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVE--KRQ----VSIEEGEAKSRELN---VMF 148 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 148 (208)
+++|++|+|||++++++++.+..|+..+.... .+++|+++|+||+|+.+ .+. ....++..++..+| +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999987766554432 35799999999999976 343 45577888888887 799
Q ss_pred EEeecCCCCChHHHHHHHHHHcCC
Q 028507 149 IETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 149 ~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
+++||++ .++.++|..+...+..
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEeeecC-ChHHHHHHHHHHHHcC
Confidence 9999999 8999999888876643
No 107
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=185.77 Aligned_cols=159 Identities=21% Similarity=0.332 Sum_probs=121.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|.++.+... .++.+... ..+...+ +.+.||||||++.+..++..+++.+|++|
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999998886433 34444333 3344454 67999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-----cCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----LNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~sa~~~~~i~ 160 (208)
+|||++++.++..+..++..+.... ..++|+++|+||+|+.+... ..+....... .+++++++||++|.|++
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 9999999999999988887775543 35799999999999976443 2333222221 24579999999999999
Q ss_pred HHHHHHHHHcCC
Q 028507 161 PLFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
++|++|.+.+.+
T Consensus 316 el~~~l~~~l~~ 327 (329)
T 3o47_A 316 EGLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=2.2e-27 Score=171.04 Aligned_cols=161 Identities=16% Similarity=0.228 Sum_probs=126.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh------hchhhh
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSY 78 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~ 78 (208)
+.++.++|+++|++|+|||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||+..+. .+...+
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 80 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY 80 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence 346789999999999999999999998766555556666666666677766 679999999988764 334445
Q ss_pred cc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCC
Q 028507 79 IR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (208)
Q Consensus 79 ~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 156 (208)
+. .+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.+.+.+. .....++..++++++++||+++
T Consensus 81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~ 153 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKK 153 (188)
T ss_dssp HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGT
T ss_pred HhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCC
Confidence 53 5999999999875 4555667766654 458999999999987655444 3556777888999999999999
Q ss_pred CChHHHHHHHHHHcCCCc
Q 028507 157 FNIKPLFRKIAAALPGME 174 (208)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~ 174 (208)
.|++++|+++.+.+.+..
T Consensus 154 ~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 154 MGIEELKKAISIAVKDKK 171 (188)
T ss_dssp BSHHHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999999887654
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=2.6e-27 Score=194.63 Aligned_cols=166 Identities=20% Similarity=0.331 Sum_probs=127.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+.+||+|+|.+|+|||||+++|+++.+.. ..+|.+... ..+...+ +.+.||||+|++.+..++..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeE--EEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 467999999999999999999999888643 445554433 3344444 68999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCcccCCCHHHHHHHHH-----hcCCeEEEeecCCCCChH
Q 028507 87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~~i~ 160 (208)
+|||+++++++..+..|+..+..... .++|+++|+||+|+.+.. ...+...... ..+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999999999888865433 579999999999986533 2333333222 123479999999999999
Q ss_pred HHHHHHHHHcCCCcccccc
Q 028507 161 PLFRKIAAALPGMETLSST 179 (208)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~ 179 (208)
++|++|.+.+.+.....++
T Consensus 473 ~l~~~l~~~~~~~~~~~~~ 491 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAALE 491 (497)
T ss_dssp HHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCc
Confidence 9999999999766655443
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=4.6e-27 Score=170.35 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=109.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCC----------chhhhhch
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI 75 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 75 (208)
....++|+|+|++|+|||||+++|++..+.....++.+.+........+. .+.+||||| .+.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34579999999999999999999998876554444444444444444443 589999999 66777777
Q ss_pred hhhccCC---cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCH--HHHHH-HHHhcCCeEE
Q 028507 76 PSYIRDS---SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--EEGEA-KSRELNVMFI 149 (208)
Q Consensus 76 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~ 149 (208)
..++..+ |++++|+|++++.++.... ++..+.. .++|+++|+||+|+.+.+++.. .+... +....+++++
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 7777766 9999999999876665532 2222222 4589999999999977654322 22222 2223467999
Q ss_pred EeecCCCCChHHHHHHHHHHcC
Q 028507 150 ETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
++||+++.|++++|++|.+.+.
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999998764
No 111
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=5e-27 Score=167.25 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=116.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc--------hhhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY 78 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~ 78 (208)
+.++|+|+|++|+|||||+++|.+..+. ....++++.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987642 23345555566667777777 35899999997643211 1235
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
++.+|++++|||++++.+++ ...|+..+......++|+++|+||+|+.+... .++...+.+++++||+++.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999887765 45677777766656799999999999854321 11223467899999999999
Q ss_pred hHHHHHHHHHHcCC
Q 028507 159 IKPLFRKIAAALPG 172 (208)
Q Consensus 159 i~~~~~~l~~~~~~ 172 (208)
++++|++|.+.+..
T Consensus 153 v~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 153 VDVLRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999988743
No 112
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=4.6e-27 Score=169.53 Aligned_cols=156 Identities=23% Similarity=0.307 Sum_probs=116.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCC-----------chhhhhchhhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLIPSY 78 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~~ 78 (208)
+||+++|++|+|||||+++|.+..+...+.++.+.... ..... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~--~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeE--EEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998887666665554332 23333 589999999 56677777777
Q ss_pred ccC-CcEEEEEEeCCChhhHHHH-HHHHHH--------H-HHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCe
Q 028507 79 IRD-SSVAVVVYDVASRQSFLNT-SKWIDE--------V-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM 147 (208)
Q Consensus 79 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------i-~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (208)
++. +++++++|++.+..++..+ ..|... + ......++|+++|+||+|+.+.. ..+...++..++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 666 6766666666666677665 555432 2 22223569999999999987654 55677778877764
Q ss_pred -------EEEeecCCCCChHHHHHHHHHHcCCCc
Q 028507 148 -------FIETSAKAGFNIKPLFRKIAAALPGME 174 (208)
Q Consensus 148 -------~~~~sa~~~~~i~~~~~~l~~~~~~~~ 174 (208)
++++||++|.|++++|++|.+.+.+.+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 799999999999999999999886543
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=1.5e-26 Score=162.42 Aligned_cols=151 Identities=20% Similarity=0.202 Sum_probs=107.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh-------hhhchhhhccC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD 81 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 81 (208)
+||+++|++|+|||||+++|.+..+. ....++.+.+.....+..++. .+.+||+||... +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988753 233444555556666666664 689999999876 34455667899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCChH
Q 028507 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK 160 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~ 160 (208)
+|++|+|+|++++.+.. ..++..+... .++|+++|+||+|+.+.. .+...++ .+++ +++++||+++.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 99999999999753322 2233333222 358999999999997653 2233344 5677 89999999999999
Q ss_pred HHHHHHHHHcC
Q 028507 161 PLFRKIAAALP 171 (208)
Q Consensus 161 ~~~~~l~~~~~ 171 (208)
++|++|.+.++
T Consensus 151 ~l~~~l~~~l~ 161 (161)
T 2dyk_A 151 ELLEAIWERLP 161 (161)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCc
Confidence 99999998763
No 114
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=1.1e-25 Score=174.20 Aligned_cols=169 Identities=15% Similarity=0.177 Sum_probs=130.4
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCC-CCCCccceeeEEEEEEEC-CEEEEEEEEEcCCchhhh---------
Q 028507 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFR--------- 72 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~--------- 72 (208)
++..+.-.|+++|.+|+|||||+|+|++.++.. ...+.++........... + ..+.||||||+..+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHH
Confidence 445677999999999999999999999988753 334444444444455555 4 679999999985433
Q ss_pred -hchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC--CeEE
Q 028507 73 -SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFI 149 (208)
Q Consensus 73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~ 149 (208)
.....++..+|++++|+|++++.+......|+..+.. .++|+++|+||+|+.............+...++ .+++
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 4556678899999999999988777777766776655 358999999999997444445666677777765 6899
Q ss_pred EeecCCCCChHHHHHHHHHHcCCCcccc
Q 028507 150 ETSAKAGFNIKPLFRKIAAALPGMETLS 177 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~~~~~~~~ 177 (208)
++||++|.|++++|++|.+.+++.....
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~~~~~ 187 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEGEPLF 187 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBCCCSS
T ss_pred EEeCCCCCCHHHHHHHHHHhCccCCCCC
Confidence 9999999999999999999997654433
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=1.7e-26 Score=174.44 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=122.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc------hhhhc-
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI- 79 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~- 79 (208)
.+.++|+++|++|+|||||+++|++..+.....++.+.+.....+...+ ..+.+||+||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4579999999999999999999998776555556666666666666655 67999999998876542 24444
Q ss_pred -cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 80 -RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 80 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
..+|++|+|+|+++.++.. .|+..+.. .++|+++|+||+|+.+.+.+.. +...++..++++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999875543 34444443 3599999999999976655543 36777888899999999999999
Q ss_pred hHHHHHHHHHHcC
Q 028507 159 IKPLFRKIAAALP 171 (208)
Q Consensus 159 i~~~~~~l~~~~~ 171 (208)
++++|++|.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 116
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=4.5e-27 Score=180.94 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=117.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCC---CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh---chhhhccCCcE
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSV 84 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d~ 84 (208)
||+++|.+|||||||++++.++.++. ...+|.+.+... ++ ..+++.||||+|+++|.. ....+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654432 245666655543 22 237899999999999964 35788999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc-------cCCCHHHHHHHHHh----cCCeEEEe
Q 028507 85 AVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------RQVSIEEGEAKSRE----LNVMFIET 151 (208)
Q Consensus 85 ~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 151 (208)
+|+|||++++ +....+..|+..+... .+++|+++++||+|+.++ +++..+++++++.. +++.+++|
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999987 3333333344444433 467999999999999764 34556666777775 67899999
Q ss_pred ecCCCCChHHHHHHHHHHcCC
Q 028507 152 SAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 152 sa~~~~~i~~~~~~l~~~~~~ 172 (208)
||++ .++.++|..+++.+.+
T Consensus 155 SAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSST
T ss_pred ccCC-CcHHHHHHHHHHHHHh
Confidence 9998 5899999999987754
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=5.8e-27 Score=193.94 Aligned_cols=167 Identities=20% Similarity=0.334 Sum_probs=127.6
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEE--------EECCEEEEEEEEEcCCchhhhhchh
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM--------YLEDRTVRLQLWDTAGQERFRSLIP 76 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~D~~G~~~~~~~~~ 76 (208)
...+.+||+++|.+|||||||+++|.+..+.....++.+.+...... ..++..+.+.+||+||++.+..+..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 34678999999999999999999999999887777887776654421 1123347899999999999999999
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCC
Q 028507 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 156 (208)
.+++.+|++|+|||+++. +.+..|+..+.... ++.|+++|+||+|+.+.+.+..++.+..+...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999764 56678888887665 46999999999999888888888889999999999999999999
Q ss_pred CChHHHHHHHHHHcCCCcc
Q 028507 157 FNIKPLFRKIAAALPGMET 175 (208)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~~ 175 (208)
.|++++|+.|.+.+.+...
T Consensus 193 ~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp --CTTHHHHHHHHHTCTTS
T ss_pred cCHHHHHHHHHHHHhcccc
Confidence 9999999999998876543
No 118
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=1.1e-26 Score=177.12 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=121.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh----------chh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIP 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~ 76 (208)
|+.++|+++|.+|+|||||+|+|++..+.....++++.+.....+...+ ..+.+|||||+..+.. ...
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHH
Confidence 4679999999999999999999998876556666776677666776666 4689999999887652 122
Q ss_pred hh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecC
Q 028507 77 SY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154 (208)
Q Consensus 77 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 154 (208)
.+ ...+|++|+|+|+++.+....+..++. .. ++|+++|+||+|+.+.+... .....++..++++++++||+
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~ 151 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLYLTLQLL---EL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVST 151 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCG
T ss_pred HHHhhcCCCEEEEEecCCChHHHHHHHHHHH---hc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcC
Confidence 22 279999999999998665544443333 22 49999999999987654432 22456677789999999999
Q ss_pred CCCChHHHHHHHHHHcCCC
Q 028507 155 AGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 155 ~~~~i~~~~~~l~~~~~~~ 173 (208)
+|.|++++|++|.+.+...
T Consensus 152 ~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GGHHHHHHHHHHHTCCCCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999887643
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=2.4e-26 Score=173.44 Aligned_cols=151 Identities=15% Similarity=0.201 Sum_probs=119.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh----------chhhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPSYI 79 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~~ 79 (208)
.+|+++|++|+|||||+|+|++........++++.+.....+..++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988766666677777777777777774 799999999877653 344556
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCC
Q 028507 80 --RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157 (208)
Q Consensus 80 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 157 (208)
..+|++|+|+|+++.++...+..++. ..++|+++|+||+|+.+.+.... ....+...++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCC
Confidence 89999999999998665554333322 23699999999999876554332 2345677789999999999999
Q ss_pred ChHHHHHHHHHH
Q 028507 158 NIKPLFRKIAAA 169 (208)
Q Consensus 158 ~i~~~~~~l~~~ 169 (208)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999887
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=2.6e-26 Score=174.45 Aligned_cols=154 Identities=14% Similarity=0.167 Sum_probs=117.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh------hchhhhcc--
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR-- 80 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~-- 80 (208)
.++|+++|++|+|||||+++|++........++.+.+.... .+.. ...+.+|||||+..+. .+...++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 58999999999999999999998765444455544443333 3343 4679999999988765 34455554
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
.+|++|+|+|+++.+.. ..|...+.. .++|+++++||+|+.+.+.+. .....++..++++++++||++|.|++
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 69999999999876543 345555543 359999999999987655544 35567788889999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028507 161 PLFRKIAAALPG 172 (208)
Q Consensus 161 ~~~~~l~~~~~~ 172 (208)
++|+++.+.+..
T Consensus 153 el~~~i~~~~~~ 164 (272)
T 3b1v_A 153 QVVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHHSCTT
T ss_pred HHHHHHHHHHhh
Confidence 999999987643
No 121
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=3.5e-25 Score=160.19 Aligned_cols=159 Identities=19% Similarity=0.275 Sum_probs=111.7
Q ss_pred CCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCC----------chhhhh
Q 028507 4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRS 73 (208)
Q Consensus 4 ~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~ 73 (208)
.+....++|+|+|++|+|||||+++|++..+. ...++.+.+........+. .+.+||||| .+.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 33456789999999999999999999988742 2233333333333333332 478999999 566666
Q ss_pred chhhhccCC---cEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHhcC-
Q 028507 74 LIPSYIRDS---SVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELN- 145 (208)
Q Consensus 74 ~~~~~~~~~---d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~- 145 (208)
++..+++.+ |++++|+|+++..+.. .+..|+... ++|+++|+||+|+.++.. ...++...++...+
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE 167 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence 666666655 9999999998653322 233333322 599999999999975432 23344555555534
Q ss_pred CeEEEeecCCCCChHHHHHHHHHHcCC
Q 028507 146 VMFIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 146 ~~~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
++++++||+++.|++++|++|.+.+.+
T Consensus 168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 168 YTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 699999999999999999999988754
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.93 E-value=1.8e-25 Score=170.16 Aligned_cols=159 Identities=23% Similarity=0.239 Sum_probs=124.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh------chhhhc-
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI- 79 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~- 79 (208)
|+.++|+++|++|+|||||+++|++..+.....++.+.+.....+.+.+ ..+.+||+||+..+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 4679999999999999999999998877656667777777777777777 4599999999887655 344444
Q ss_pred -cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 80 -RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 80 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
..+|++|+|+|+++.+ ....++..+... ..+|+++|+||+|+.+.+..... ...+...++++++++|+++|.|
T Consensus 79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM---RNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEG 152 (271)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBT
T ss_pred ccCCcEEEEEecCCcch---hhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCC
Confidence 6899999999998753 233334444332 22899999999998765444332 5667778899999999999999
Q ss_pred hHHHHHHHHHHcCCC
Q 028507 159 IKPLFRKIAAALPGM 173 (208)
Q Consensus 159 i~~~~~~l~~~~~~~ 173 (208)
+.++|+.+...+...
T Consensus 153 i~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 153 VEELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987543
No 123
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=3.7e-26 Score=168.53 Aligned_cols=148 Identities=17% Similarity=0.226 Sum_probs=107.4
Q ss_pred CCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCC---CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhh
Q 028507 2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 78 (208)
Q Consensus 2 ~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 78 (208)
......+.++|+|+|++|+|||||+++|.+..+.. .+.++.+.++ ..+.+.+||+||++.+...+..+
T Consensus 5 ~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~ 75 (218)
T 1nrj_B 5 GIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDY 75 (218)
T ss_dssp -----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHH
T ss_pred CCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHH
Confidence 33445678999999999999999999999887654 2334433222 23569999999999998888888
Q ss_pred ccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCcccCCC------HHHHHHHHHh
Q 028507 79 IRD----SSVAVVVYDVA-SRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSRE 143 (208)
Q Consensus 79 ~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~D~~~~~~~~------~~~~~~~~~~ 143 (208)
+.. +|++|+|||++ +++++..+..|+..+... ...++|+++|+||+|+.+...+. ..+...++..
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~ 155 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIER 155 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 776 89999999999 888899888888887654 34679999999999997765543 4455666667
Q ss_pred cCCeEEEeecCCCCC
Q 028507 144 LNVMFIETSAKAGFN 158 (208)
Q Consensus 144 ~~~~~~~~sa~~~~~ 158 (208)
.++.++++|++++.+
T Consensus 156 ~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 156 RKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHC--------
T ss_pred Hhccccccccccccc
Confidence 778899999999875
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=1.7e-24 Score=166.86 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=114.3
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCC-CCCCccceeeEEEEEEECCEEEEEEEEEcCCchh--------h
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------F 71 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~ 71 (208)
|+++ .+..+|+|+|.+|+|||||+|+|++.++.. ...+.++...........+ ..+.||||||... +
T Consensus 1 m~~~--~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~ 76 (301)
T 1wf3_A 1 MAEK--TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFM 76 (301)
T ss_dssp --CC--CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHH
T ss_pred CCCC--ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHH
Confidence 5554 567899999999999999999999988743 3334343343333344444 6799999999765 4
Q ss_pred hhchhhhccCCcEEEEEEeCCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh-cC-CeE
Q 028507 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LN-VMF 148 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~ 148 (208)
......+++.+|++++|+|++++.+.. ..|+ ..+... ..++|+++|+||+|+.+.... ....+.. .+ .++
T Consensus 77 ~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~ 149 (301)
T 1wf3_A 77 DQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEP 149 (301)
T ss_dssp HHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEE
T ss_pred HHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcE
Confidence 445566789999999999998764433 3444 344333 246999999999998654320 1222222 23 479
Q ss_pred EEeecCCCCChHHHHHHHHHHcCCCc
Q 028507 149 IETSAKAGFNIKPLFRKIAAALPGME 174 (208)
Q Consensus 149 ~~~sa~~~~~i~~~~~~l~~~~~~~~ 174 (208)
+++||++|.|++++|++|...+++..
T Consensus 150 ~~iSA~~g~gv~~l~~~l~~~l~~~~ 175 (301)
T 1wf3_A 150 RMLSALDERQVAELKADLLALMPEGP 175 (301)
T ss_dssp EECCTTCHHHHHHHHHHHHTTCCBCC
T ss_pred EEEeCCCCCCHHHHHHHHHHhcccCC
Confidence 99999999999999999999876543
No 125
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=2.8e-25 Score=164.32 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=108.5
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcC--CCCCCCccceeeEEEEEEEC-CEEEEEEEEEcCCc----------hhh
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ----------ERF 71 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~----------~~~ 71 (208)
+....++|+|+|.+|+|||||+++|++... .....+.++... ...... .....+.||||||. +.+
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW 102 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence 345678999999999999999999998863 222233332222 222332 22357999999994 344
Q ss_pred hhchhhhccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC--HHHHHHHHHh---
Q 028507 72 RSLIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE--- 143 (208)
Q Consensus 72 ~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~~~--- 143 (208)
......++.. +|++|+|+|++++.+. ....++..+.. .++|+++|+||+|+.+..... ..+.......
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~ 178 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRD 178 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhh
Confidence 5555555554 8889999999864332 22333444433 458999999999987644321 1222222332
Q ss_pred ----cCCeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 144 ----LNVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 144 ----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
.+.+++++||+++.|++++|++|.+.+...
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 456899999999999999999999988654
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=8.7e-26 Score=182.57 Aligned_cols=173 Identities=21% Similarity=0.177 Sum_probs=122.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCc----------hhhhhch
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI 75 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 75 (208)
...++|+++|.+|+|||||+|+|++..+. ....++++.+.....+..++. .+.||||||+ +.|..+.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35699999999999999999999987753 344455566666666777774 5999999998 4444333
Q ss_pred h-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHH-----HhcCCeEE
Q 028507 76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFI 149 (208)
Q Consensus 76 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~ 149 (208)
. .+++.+|++++|+|++++.++... .|+..+.. .++|+++|+||+|+.+.+.....+..... ...+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 2 467899999999999987776664 45555543 45999999999999876654443332222 22367999
Q ss_pred EeecCCCCChHHHHHHHHHHcCCCcccccccccccc
Q 028507 150 ETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMV 185 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 185 (208)
++||++|.|++++|+.+.+.+.+...+.++......
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~ 362 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDV 362 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 999999999999999999988766555554444333
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=5.1e-25 Score=179.00 Aligned_cols=172 Identities=21% Similarity=0.210 Sum_probs=124.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCc-CCCCCCCccceeeEEEEEEECCEEEEEEEEEcCC----------chhhhhch
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI 75 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~ 75 (208)
...++|+++|.+|+|||||+++|++.. ......++++.+.....+..++. .+.|||||| ++.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 457999999999999999999999765 33344555555655566667774 699999999 56665554
Q ss_pred h-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhc-----CCeEE
Q 028507 76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFI 149 (208)
Q Consensus 76 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~ 149 (208)
. .+++.+|++|+|+|+++... +....|...+.. .++|+++|+||+|+.+.+....++....+... +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 36789999999999986433 222334444433 45999999999999877776667766666654 57999
Q ss_pred EeecCCCCChHHHHHHHHHHcCCCccccccccccc
Q 028507 150 ETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEM 184 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 184 (208)
++||++|.|++++|+++.+.+.+.....++.....
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~ 381 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENHSLRVQTNVLND 381 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 99999999999999999998876665555444433
No 128
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=1.1e-24 Score=174.28 Aligned_cols=160 Identities=20% Similarity=0.208 Sum_probs=117.4
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhc-------hh
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IP 76 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------~~ 76 (208)
.....++|+|+|..|+|||||+++|++..+. ....+.++.+.....+.+.+. ..+.+|||||+..+..+ ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 3456799999999999999999999988763 344555556666666666654 27999999999877554 34
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCC
Q 028507 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 156 (208)
.++..+|++|+|+|++.. .....|+..+... ++|+++|+||+|+.+.... +....++..++++++++||++|
T Consensus 109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg 180 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK 180 (423)
T ss_dssp HHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence 468899999999999433 2335566666554 5999999999999776654 5556667778899999999999
Q ss_pred CChHHHHHHHHHHcCCC
Q 028507 157 FNIKPLFRKIAAALPGM 173 (208)
Q Consensus 157 ~~i~~~~~~l~~~~~~~ 173 (208)
.|++++|++|.+.+.+.
T Consensus 181 ~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 181 KGFDDIGKTISEILPGD 197 (423)
T ss_dssp TSTTTHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHhhhhh
Confidence 99999999999999654
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=5.1e-24 Score=173.06 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=99.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhch--------hhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI 79 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~~~ 79 (208)
.++|+|+|.+|+|||||+|+|++... .....++++.+.....+.+++ +.+.+|||||+..+...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 58899999999999999999998753 344556666677667777777 579999999987765433 3367
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 028507 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 159 (208)
..+|++|+|+|++++.++..+..+...+.... ++|+++|+||+|+.+.... ..+.+......+++++||++|.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence 89999999999998877654333333332222 6999999999999765433 223333332368999999999999
Q ss_pred HHHHHHHHHHcC
Q 028507 160 KPLFRKIAAALP 171 (208)
Q Consensus 160 ~~~~~~l~~~~~ 171 (208)
+++|++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=8.3e-24 Score=166.92 Aligned_cols=162 Identities=19% Similarity=0.180 Sum_probs=121.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh---------hchhh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPS 77 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~~ 77 (208)
...++|+++|.+|+|||||+++|.+..+.....+..+.......+...+ ..+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4568999999999999999999998775333333333344444444444 579999999975421 11223
Q ss_pred hccCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCC
Q 028507 78 YIRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA 155 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 155 (208)
+...+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.+...+ .+...++...+++++++||++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~ 319 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK 319 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence 445799999999998876 67778888888877653 6999999999999765432 445566667788999999999
Q ss_pred CCChHHHHHHHHHHcCCC
Q 028507 156 GFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 156 ~~~i~~~~~~l~~~~~~~ 173 (208)
|+|++++|++|.+.+.+.
T Consensus 320 g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 320 GTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHH
Confidence 999999999999988544
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=6.3e-24 Score=165.87 Aligned_cols=160 Identities=19% Similarity=0.149 Sum_probs=120.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh----hhhchhhh---ccCCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~---~~~~d 83 (208)
+|+|+|.+|+|||||+++|++.+......+.++.+.....+.+++. ..+.+||+||+.. +..+...+ +..++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 6889999999999999999987654333343444444444555542 4699999999653 22233333 45699
Q ss_pred EEEEEEeCCC---hhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC--CeEEEeecCCC
Q 028507 84 VAVVVYDVAS---RQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAG 156 (208)
Q Consensus 84 ~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~ 156 (208)
++|+|+|+++ +++++.+..|+.++..+.. .++|+++|+||+|+.+.. +..+.+...+. .+++++||+++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg 314 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR 314 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence 9999999998 7889999999999987642 469999999999986532 34455566665 68999999999
Q ss_pred CChHHHHHHHHHHcCCCcc
Q 028507 157 FNIKPLFRKIAAALPGMET 175 (208)
Q Consensus 157 ~~i~~~~~~l~~~~~~~~~ 175 (208)
.|+++++++|.+.+.+...
T Consensus 315 ~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 315 EGLRELLFEVANQLENTPE 333 (342)
T ss_dssp STTHHHHHHHHHHHTSCCC
T ss_pred cCHHHHHHHHHHHHhhCcc
Confidence 9999999999999876543
No 132
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=3.4e-22 Score=160.31 Aligned_cols=165 Identities=21% Similarity=0.216 Sum_probs=107.1
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHhhcCc---CCCCCCC--ccceeeEEEEEEE-------------C--C----EEE
Q 028507 3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQA--TIGIDFLSKTMYL-------------E--D----RTV 58 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKstli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~ 58 (208)
|....+.++|+++|+.++|||||+++|.+.. +..+..+ |....+....+.. + + ...
T Consensus 2 p~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~ 81 (408)
T 1s0u_A 2 PLGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLR 81 (408)
T ss_dssp ---CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEE
T ss_pred CcccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCccccccc
Confidence 3444567999999999999999999998543 3333334 3322333222211 1 1 136
Q ss_pred EEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC--C
Q 028507 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--V 132 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~--~ 132 (208)
.+.||||||+++|...+...+..+|++|+|+|+++ +++.+.+. .+.. .+ ..|+++++||+|+.+... .
T Consensus 82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~-l~-~~~iivv~NK~Dl~~~~~~~~ 155 (408)
T 1s0u_A 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEI-LG-IDKIIIVQNKIDLVDEKQAEE 155 (408)
T ss_dssp EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHH-TT-CCCEEEEEECTTSSCTTTTTT
T ss_pred EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHH-cC-CCeEEEEEEccCCCCHHHHHH
Confidence 89999999999998888888889999999999995 33443332 2222 22 257999999999976543 2
Q ss_pred CHHHHHHHHHh---cCCeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 133 SIEEGEAKSRE---LNVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 133 ~~~~~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
..+++..++.. .+++++++||++|.|+++++++|.+.++..
T Consensus 156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 34556666654 357899999999999999999999987643
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.89 E-value=6e-23 Score=166.91 Aligned_cols=152 Identities=21% Similarity=0.279 Sum_probs=116.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch-hhhh--------chhhh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-RFRS--------LIPSY 78 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~~ 78 (208)
.++|+|+|.+|+|||||+|+|++..+ .....++++.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 38999999999999999999998764 345556666777777777777 569999999987 5432 23456
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCC
Q 028507 79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 158 (208)
+..+|++|+|+|++++.+++... ++..+ .++|+++|+||+|+.+. ....+...++. .+++++++||+++.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 78999999999999887765532 22222 35899999999999653 34444444432 346899999999999
Q ss_pred hHHHHHHHHHHcC
Q 028507 159 IKPLFRKIAAALP 171 (208)
Q Consensus 159 i~~~~~~l~~~~~ 171 (208)
++++|++|.+.+.
T Consensus 392 i~eL~~~l~~~~~ 404 (482)
T 1xzp_A 392 LEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999765
No 134
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=9.1e-23 Score=166.41 Aligned_cols=157 Identities=21% Similarity=0.211 Sum_probs=112.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCc-------CCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhh
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 78 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 78 (208)
.|+.++|+++|+.++|||||+++|++.. ...+..+..+++.....+.+++ ..+.||||||+++|...+...
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 4678999999999999999999999766 2333444444444444455555 679999999999998888888
Q ss_pred ccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHhc----CCeEE
Q 028507 79 IRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSREL----NVMFI 149 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~ 149 (208)
+..+|++|+|+|+++ +++.+.+. .+. . .++|+++++||+|+.++.. ...++...++... +++++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~----~~~-~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHML----ILD-H--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHH----HHH-H--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHH----HHH-H--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 999999999999987 44443332 222 2 2488899999999975322 1233444555544 56899
Q ss_pred EeecCCCCChHHHHHHHHHHcC
Q 028507 150 ETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
++||++|.|+.+++++|.+.++
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHhhc
Confidence 9999999999999999998764
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=7.1e-22 Score=158.21 Aligned_cols=167 Identities=17% Similarity=0.119 Sum_probs=116.7
Q ss_pred CCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCcc-ce--------------eeEEEEEEE---CCEEEEEEEEEcC
Q 028507 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GI--------------DFLSKTMYL---EDRTVRLQLWDTA 66 (208)
Q Consensus 5 ~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~~--------------~~~~~~~~~---~~~~~~~~i~D~~ 66 (208)
...+.++|+++|++|+|||||+++|++........... .. +........ ......+.|||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 34678999999999999999999998754322110000 00 000000000 1123689999999
Q ss_pred CchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHHhc
Q 028507 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSREL 144 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~ 144 (208)
|++.|...+...+..+|++|+|+|+++..++....+++..+.... ..|+++++||+|+.+.... ..++...+....
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998765666667766555443 2589999999999764321 122333333322
Q ss_pred ---CCeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 145 ---NVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 145 ---~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
+++++++||++|.|+.+++++|.+.++..
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 56899999999999999999999988644
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.6e-22 Score=163.58 Aligned_cols=153 Identities=19% Similarity=0.239 Sum_probs=104.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh---------hhhchhhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSYI 79 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 79 (208)
.+|+|+|.+|||||||+|+|++.+.. ....++++.+.....+.+.+. .+.+|||||... +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999988753 345566666777777778774 589999999664 234556678
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHH-HHHHHhcCC-eEEEeecCCCC
Q 028507 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG-EAKSRELNV-MFIETSAKAGF 157 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~sa~~~~ 157 (208)
+.+|++|+|+|+++..+... .++..+... .++|+++|+||+|+.+.. ..+. ..+. .+++ .++++||++|.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 80 READLVLFVVDGKRGITKED--ESLADFLRK--STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNI 151 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHH--HHHHHHHHH--HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTB
T ss_pred HhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCC
Confidence 99999999999986543322 222222222 248999999999985321 1222 3333 5576 78999999999
Q ss_pred ChHHHHHHHHHHcCC
Q 028507 158 NIKPLFRKIAAALPG 172 (208)
Q Consensus 158 ~i~~~~~~l~~~~~~ 172 (208)
|+.+++++|...+++
T Consensus 152 gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 152 NLDTMLETIIKKLEE 166 (439)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccc
Confidence 999999999988864
No 137
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=1.4e-21 Score=146.04 Aligned_cols=162 Identities=14% Similarity=0.118 Sum_probs=108.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCC--ccceeeEEEEEEECCEEEEEEEEEcCCch-----------hhhh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----------RFRS 73 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~ 73 (208)
...++|+|+|.+|+|||||+++|++..+.....+ +.+.........+++ ..+.||||||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4679999999999999999999999887655544 444555555666666 469999999943 3444
Q ss_pred chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCC------HHHHHHHHHhcC
Q 028507 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVS------IEEGEAKSRELN 145 (208)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~------~~~~~~~~~~~~ 145 (208)
.+...++++|++|+|+|+++.... ...++..+....+ ...|+++|+||+|+.+...+. ....+.++...+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 455556789999999998754331 1223333322211 236899999999987654433 235667777788
Q ss_pred CeEEEeecCCC-----CChHHHHHHHHHHcCC
Q 028507 146 VMFIETSAKAG-----FNIKPLFRKIAAALPG 172 (208)
Q Consensus 146 ~~~~~~sa~~~-----~~i~~~~~~l~~~~~~ 172 (208)
..++.++...+ .++.++|+.+..++.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88888877644 6889999988888754
No 138
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=3.5e-22 Score=161.37 Aligned_cols=157 Identities=17% Similarity=0.199 Sum_probs=105.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCc-------------------------------CCCCCCCccceeeEEEEEEEC
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-------------------------------FDNTYQATIGIDFLSKTMYLE 54 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (208)
....++|+++|++++|||||+++|++.. ...+..+..+++.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3467999999999999999999996431 111222444555555555555
Q ss_pred CEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhh---HHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCccc
Q 028507 55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR 130 (208)
Q Consensus 55 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~ 130 (208)
+ ..+.||||||+++|...+...+..+|++|+|+|+++... ++....+...+......++| +++++||+|+....
T Consensus 94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~ 171 (439)
T 3j2k_7 94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 171 (439)
T ss_pred C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence 4 579999999999999988889999999999999987421 11001111111111223477 89999999985321
Q ss_pred ------CCCHHHHHHHHHhcC------CeEEEeecCCCCChHHHHH
Q 028507 131 ------QVSIEEGEAKSRELN------VMFIETSAKAGFNIKPLFR 164 (208)
Q Consensus 131 ------~~~~~~~~~~~~~~~------~~~~~~sa~~~~~i~~~~~ 164 (208)
.....+...++..++ ++++++||++|.|+.++++
T Consensus 172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 111233344444444 4799999999999998554
No 139
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=9.1e-22 Score=151.72 Aligned_cols=161 Identities=16% Similarity=0.207 Sum_probs=112.4
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCch-h--------hhhch
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-R--------FRSLI 75 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~--------~~~~~ 75 (208)
..+..+|+|+|++|+|||||+|+|++.++. ....+.++.......+..++ ..+.+|||||+. . +....
T Consensus 5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CCEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHH
Confidence 355678999999999999999999988753 22223233333333344444 579999999987 2 33344
Q ss_pred hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecC
Q 028507 76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAK 154 (208)
Q Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~ 154 (208)
..++..+|++++|+|+++ +.....++.... ...+.|+++++||+|+.............+...+++ .++++||+
T Consensus 83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l--~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKL--REGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp TSCCCCEEEEEEEEETTC---CCHHHHHHHHHH--HSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHH--HhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence 567889999999999976 223333333222 224599999999999865222223444555555676 79999999
Q ss_pred CCCChHHHHHHHHHHcCCC
Q 028507 155 AGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 155 ~~~~i~~~~~~l~~~~~~~ 173 (208)
++.++.++++.+...+++.
T Consensus 158 ~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp TTTTHHHHHHHHHTTCCBC
T ss_pred CCCCHHHHHHHHHHhCCcC
Confidence 9999999999999987654
No 140
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=5.8e-22 Score=164.63 Aligned_cols=160 Identities=18% Similarity=0.228 Sum_probs=112.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc--CCC-------------CCCCccceeeEEEEEEE---CCEEEEEEEEEcCCch
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK--FDN-------------TYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~ 69 (208)
+-.+|+|+|+.++|||||+++|+... +.. +.....++......+.+ ++..+.++||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 34799999999999999999998532 110 01111222222223333 4556899999999999
Q ss_pred hhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC---
Q 028507 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--- 146 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 146 (208)
+|...+...+..+|++|+|+|+++..+......|+.... .++|+++++||+|+.... .......+...+++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999999999999999999999998666666666665543 358999999999996543 12334455555666
Q ss_pred eEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 147 MFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 147 ~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
.++++||++|.|+++++++|.+.++..
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred eEEEeecccCCCchhHHHHHhhcCCCc
Confidence 489999999999999999999998754
No 141
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=1.2e-21 Score=157.28 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=112.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCc---CCCCCCCccce--eeEEEEEEE-------------C--C----EEEEEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGI--DFLSKTMYL-------------E--D----RTVRLQL 62 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~i 62 (208)
.+.++|+++|+.++|||||+++|++.. +..+..+..++ .+....+.. + + ....+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 456999999999999999999998543 33333343333 232222211 1 1 1368999
Q ss_pred EEcCCchhhhhchhhhccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC--CCHHH
Q 028507 63 WDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEE 136 (208)
Q Consensus 63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~--~~~~~ 136 (208)
|||||+++|.......+..+|++|+|+|+++ +++.+.+. .+... + ..|+++++||+|+.+... ...++
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~-~-~~~iivviNK~Dl~~~~~~~~~~~~ 161 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQII-G-QKNIIIAQNKIELVDKEKALENYRQ 161 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHH-T-CCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHc-C-CCcEEEEEECccCCCHHHHHHHHHH
Confidence 9999999998888888889999999999985 33444332 22222 1 257899999999976432 12334
Q ss_pred HHHHHHh---cCCeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 137 GEAKSRE---LNVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 137 ~~~~~~~---~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
+..++.. .+++++++||++|.|+++++++|.+.++..
T Consensus 162 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 162 IKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 4455443 357999999999999999999999987643
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=1e-22 Score=164.60 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=101.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCch--------hhhhchhhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYI 79 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~ 79 (208)
..+|+|+|.+|||||||+|+|++..+. ....+..+.+.......+.+ ..+.+|||||+. .+......++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 479999999999999999999987764 23334444444444444444 569999999985 5666677788
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCCCCC
Q 028507 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN 158 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~~~~ 158 (208)
..+|++|+|+|++++.+... .++..+.. ..++|+++|+||+|+.+.... ...+. .+++ .++++||++|.|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCC
Confidence 99999999999987655433 33333322 246999999999998653211 11122 3455 789999999999
Q ss_pred hHHHHHHHHHHcCCC
Q 028507 159 IKPLFRKIAAALPGM 173 (208)
Q Consensus 159 i~~~~~~l~~~~~~~ 173 (208)
+.++++++.+.+++.
T Consensus 152 v~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNI 166 (436)
T ss_dssp HHHHHHHHHHTGGGC
T ss_pred hHHHHHHHHHhcCcc
Confidence 999999999988643
No 143
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=9.9e-23 Score=164.93 Aligned_cols=153 Identities=21% Similarity=0.244 Sum_probs=105.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchh--------hhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP--------SYI 79 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~--------~~~ 79 (208)
.++|+|+|.+|+|||||+|+|++..+. ....++++.+.....+.+++ ..+.+|||||+..+...+. .++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 578999999999999999999987543 34445555566555666777 5689999999866543322 357
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 028507 80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (208)
Q Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 159 (208)
..+|++++|+|++++.+... ..++..+. ..|+++|+||+|+.+..... ....+ ..+.+++++||++|.|+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~--~~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYP--ENITQIVHTAAAQKQGI 371 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCC--TTCCCEEEEBTTTTBSH
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHh--ccCCcEEEEECCCCCCH
Confidence 89999999999998755444 34444442 37999999999997655433 11111 13568999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028507 160 KPLFRKIAAALPGM 173 (208)
Q Consensus 160 ~~~~~~l~~~~~~~ 173 (208)
++++++|.+.+...
T Consensus 372 ~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 372 DSLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988654
No 144
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=4.5e-22 Score=150.52 Aligned_cols=163 Identities=12% Similarity=0.088 Sum_probs=107.6
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCc-CCCCCCCc-cceeeEEEEEEECCEEEEEEEEEcCCchhhhhc---------
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQAT-IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------- 74 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------- 74 (208)
..+.++|+|+|++|+|||||+++|++.. +.....++ ++.+.......+.+ ..+.||||||+..+...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 3467999999999999999999999877 44444443 44555555666666 56999999998765322
Q ss_pred --hhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEe-CCCCCcccCCCH-------HHHHHHHH
Q 028507 75 --IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGN-KTDLVEKRQVSI-------EEGEAKSR 142 (208)
Q Consensus 75 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~n-K~D~~~~~~~~~-------~~~~~~~~ 142 (208)
...+++.+|++|+|+|+++..... ..++..+....+. ..|+++++| |+|+.... +.. .+....+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHH
Confidence 223568999999999998632221 1222333333221 356666666 99986432 111 22333555
Q ss_pred hcCCe---E--EEeecCCCCChHHHHHHHHHHcCCC
Q 028507 143 ELNVM---F--IETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 143 ~~~~~---~--~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
..+.. + +++||+++.|++++|++|.+.+...
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 55432 2 7899999999999999999988643
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=1.5e-21 Score=161.98 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=114.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc--CCC-------------CCCCccceeeEEEEEEE---CCEEEEEEEEEcCCch
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK--FDN-------------TYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~ 69 (208)
+-.+|+|+|+.++|||||+++|+... +.. +.....++......+.+ ++..+.++||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 45799999999999999999998531 110 00111122111122222 4556899999999999
Q ss_pred hhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC---
Q 028507 70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--- 146 (208)
Q Consensus 70 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 146 (208)
+|...+...+..+|++|+|+|+++..+......|+.... .++|+++++||+|+.... .......+...+++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~ 158 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPE 158 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcc
Confidence 999988889999999999999998766777666665543 359999999999986543 12233445555666
Q ss_pred eEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 147 MFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 147 ~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
.++++||++|.|+.++|++|.+.++..
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred cEEEEEeecCCCchHHHHHHHHhcccc
Confidence 489999999999999999999998753
No 146
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=2.2e-21 Score=152.86 Aligned_cols=160 Identities=19% Similarity=0.115 Sum_probs=109.2
Q ss_pred cee-EEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch---------hhhhchhhh
Q 028507 9 KYK-LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIPSY 78 (208)
Q Consensus 9 ~~~-i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~~ 78 (208)
.++ |+|+|.+|+|||||+|+|.+..+.....+..+.+.....+.+++ ..+.+|||+|.. .+..... .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-E 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-H
Confidence 355 99999999999999999998876544555566666677777877 468999999962 2333333 4
Q ss_pred ccCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC-HHHHHHHHHhc---CCeEEEee
Q 028507 79 IRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSREL---NVMFIETS 152 (208)
Q Consensus 79 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~---~~~~~~~s 152 (208)
+..+|++++|+|++++. ....+..+...+......+.|+++|+||+|+.+..... ...+..++..+ +.+++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 78999999999999876 45555556655555444568999999999986543100 11222233444 24789999
Q ss_pred cCCCCChHHHHHHHHHHcC
Q 028507 153 AKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 153 a~~~~~i~~~~~~l~~~~~ 171 (208)
|+++.|+++++++|.+.+.
T Consensus 335 A~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhc
Confidence 9999999999999988764
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=4.4e-22 Score=161.02 Aligned_cols=178 Identities=20% Similarity=0.199 Sum_probs=116.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhch-----------
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI----------- 75 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 75 (208)
..++|+|+|++|+|||||+|+|++.... ....++++.+.....+.+++. .+.+|||+|........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4589999999999999999999987642 333445555555566777774 58999999975432221
Q ss_pred -hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH-----HHhcCCeEE
Q 028507 76 -PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFI 149 (208)
Q Consensus 76 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~ 149 (208)
..++..+|++++|+|+++..+.... .+...+. . .+.|+++++||+|+.+.+.....+.... ....+++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~-~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME-R--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH-H--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH-H--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 2356789999999999875544432 2222222 2 3599999999999976554434333222 222356999
Q ss_pred EeecCCCCChHHHHHHHHHHcCCCcccccccccccccccccc
Q 028507 150 ETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNLRS 191 (208)
Q Consensus 150 ~~sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (208)
++||++|.|++++|+.+.+.+.+...+.++........+...
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~ 374 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLA 374 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 999999999999999999988766555555444443333333
No 148
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=1.9e-22 Score=153.68 Aligned_cols=163 Identities=15% Similarity=0.228 Sum_probs=95.3
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCC-CCC-------CCccceeeEEEEEEECCEEEEEEEEEcCCchh-------
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTY-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------- 70 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------- 70 (208)
....++|+|+|.+|+|||||+|+|++.... ..+ .++.+.+.....+..++..+.+.||||||...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 345799999999999999999998866543 333 45555566555555566557899999999732
Q ss_pred hhhch-------hhhc-------------cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 71 FRSLI-------PSYI-------------RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 71 ~~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
+..+. ..++ ..+|+++++++.+.......-..++..+.. .+|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 22221 2222 237899999877652111112233443432 69999999999986543
Q ss_pred CCC--HHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHHcCC
Q 028507 131 QVS--IEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 131 ~~~--~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
+.. ..++...+...+++++++|+.+++++.+++++|.+.++-
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 321 233455556678899999999999999999999988753
No 149
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=5.2e-22 Score=149.05 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=107.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCc--cceeeEEEEEEECCEEEEEEEEEcCCc--------hhhhhch
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQ--------ERFRSLI 75 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~ 75 (208)
....++|+|+|.+|+|||||+|+|++........+. ++..........++ ..+.||||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 357899999999999999999999988875443333 33334444555666 56999999996 3333323
Q ss_pred hhhc----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCcccCC------CHHHHHHHHH
Q 028507 76 PSYI----RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQV------SIEEGEAKSR 142 (208)
Q Consensus 76 ~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~piivv~nK~D~~~~~~~------~~~~~~~~~~ 142 (208)
..++ +.+|++|+|+|+++.... ...++..+....+ .+.|+++++||.|+.+.... .....+.+..
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQ--DQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHH--HHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 2333 899999999999853221 1223333433332 25899999999998653211 1133566667
Q ss_pred hcCCeEEEeecCC-----CCChHHHHHHHHHHcCCC
Q 028507 143 ELNVMFIETSAKA-----GFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 143 ~~~~~~~~~sa~~-----~~~i~~~~~~l~~~~~~~ 173 (208)
..+..++.+++.. +.++.++++.|.+++.+.
T Consensus 174 ~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 174 ECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 7787777777655 578999999999988653
No 150
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.87 E-value=1e-23 Score=172.80 Aligned_cols=161 Identities=17% Similarity=0.181 Sum_probs=114.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV 87 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (208)
+.++|+++|++++|||||+++|.+..+.....++.+.+.....+...++ ..++||||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 4589999999999999999999977665445555554443333333221 369999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC-HHHHHHH---HHhc--CCeEEEeecCCCCChHH
Q 028507 88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAK---SREL--NVMFIETSAKAGFNIKP 161 (208)
Q Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~sa~~~~~i~~ 161 (208)
|+|+++......... +......++|+++++||+|+.+..... ..+.... +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt~e~----l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQTVES----IQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHHHHH----HHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHHHHH----HHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999997543333222 222333468999999999986533211 1111111 1122 24899999999999999
Q ss_pred HHHHHHHHcCCC
Q 028507 162 LFRKIAAALPGM 173 (208)
Q Consensus 162 ~~~~l~~~~~~~ 173 (208)
+|++|...+...
T Consensus 158 Lle~I~~l~~~~ 169 (537)
T 3izy_P 158 LAEATIALAEML 169 (537)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHhhhcc
Confidence 999999887543
No 151
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=1.1e-21 Score=160.35 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=99.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC-------------------------------CCCCCCccceeeEEEEEEECC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (208)
...+||+++|.+++|||||+++|++... .....+..+++.....+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3569999999999999999999975511 111122333343444444443
Q ss_pred EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHH-----HHHHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-----TSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
+.+.||||||+++|......++..+|++|+|+|+++..++.. ...+...+....+ ..|+++|+||+|+.+.+
T Consensus 111 --~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 111 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-IHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp --CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-CCCEEEEEECGGGGTTC
T ss_pred --ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-CCcEEEEEECcCcccch
Confidence 679999999999999999999999999999999998643221 2222222222222 24699999999997643
Q ss_pred CCCHHHHH----HHHHhc-----CCeEEEeecCCCCChHH
Q 028507 131 QVSIEEGE----AKSREL-----NVMFIETSAKAGFNIKP 161 (208)
Q Consensus 131 ~~~~~~~~----~~~~~~-----~~~~~~~sa~~~~~i~~ 161 (208)
+...++.. .++... +++++++||++|.|+.+
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 32233332 233333 35899999999999874
No 152
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=3.5e-22 Score=162.38 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=101.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCC--------chhhhhchh
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--------QERFRSLIP 76 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~ 76 (208)
.|...+|+|+|.+|||||||+|+|++..+. ....+..+.+..... .......+.+||||| ++.+.....
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~--~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSS--AEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEE--CTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEE--EEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence 466789999999999999999999987764 222333333333333 333335799999999 667777788
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCC-eEEEeecCC
Q 028507 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKA 155 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 155 (208)
.++..+|++|+|+|..+. +.....++..+... .++|+++|+||+|+.+... .... ...+++ ..+++||++
T Consensus 98 ~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~----~~~e-~~~lg~~~~~~iSA~~ 168 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREG--VTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA----NIYD-FYSLGFGEPYPISGTH 168 (456)
T ss_dssp HHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT--CCSCEEEEEECC-------------CC-SGGGSSSSEEECCTTT
T ss_pred hhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH--cCCCEEEEEECccchhhhh----hHHH-HHHcCCCceEEeeccc
Confidence 889999999999998753 23333444443332 4699999999999854321 1111 122343 567999999
Q ss_pred CCChHHHHHHHHHHcCCC
Q 028507 156 GFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 156 ~~~i~~~~~~l~~~~~~~ 173 (208)
|.|+.++++.+...+.+.
T Consensus 169 g~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 169 GLGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp CTTHHHHHHHHHTTGGGS
T ss_pred ccchHHHHHHHHhhcccc
Confidence 999999999999877543
No 153
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.4e-22 Score=142.35 Aligned_cols=116 Identities=18% Similarity=0.318 Sum_probs=88.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCC---CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccC--
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD-- 81 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~-- 81 (208)
.+.++|+|+|++|+|||||+++|.+..+.. ...++.+.++ ..+.+.+||+||+..+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 567899999999999999999999887643 2222222211 23569999999999887777776665
Q ss_pred --CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCcccC
Q 028507 82 --SSVAVVVYDVA-SRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 82 --~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~D~~~~~~ 131 (208)
+|++|+|||++ +++++..+..|+..+... ...++|+++|+||+|+.+...
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 899999988888877654 235799999999999976554
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=3.8e-22 Score=161.16 Aligned_cols=154 Identities=17% Similarity=0.252 Sum_probs=103.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC--cCCCC-----------------------------CCCccceeeEEEEEEECC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT-----------------------------YQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 55 (208)
.+.++|+++|++++|||||+++|++. .+... ..+..+++.....+...+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46799999999999999999999864 22211 112233333333333333
Q ss_pred EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHh----cCCCC-cEEEEEeCCCCCccc
Q 028507 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE----RGSDV-IIVLVGNKTDLVEKR 130 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~-piivv~nK~D~~~~~ 130 (208)
+.+.||||||+++|...+..++..+|++|+|+|+++ .+|+.+..|......+ ...++ ++++++||+|+.+..
T Consensus 84 --~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 --YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp --CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred --eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 679999999999999988889999999999999998 6666443322222111 11234 588999999997521
Q ss_pred ------CCCHHHHHHHHHhcC-----CeEEEeecCCCCChHHHH
Q 028507 131 ------QVSIEEGEAKSRELN-----VMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 131 ------~~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~~ 163 (208)
....++...++..++ ++++++||++|.|+.+++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 112345566666665 679999999999997543
No 155
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=3.4e-21 Score=153.93 Aligned_cols=161 Identities=15% Similarity=0.129 Sum_probs=110.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc-------CCCC-------CCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK-------FDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 73 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 73 (208)
+.++|+++|++++|||||+++|++.. +... .....+++.......+......+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998641 1100 001122222222233333336799999999999988
Q ss_pred chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCcccC---CCHHHHHHHHHhcC----
Q 028507 74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN---- 145 (208)
Q Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~---- 145 (208)
.....+..+|++|+|+|+++....... +++..+.. .++| +++++||+|+.+... ....+...++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE 157 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 888889999999999999974332222 22333322 2478 789999999874211 11235556666665
Q ss_pred -CeEEEeecCCCCC----------hHHHHHHHHHHcCC
Q 028507 146 -VMFIETSAKAGFN----------IKPLFRKIAAALPG 172 (208)
Q Consensus 146 -~~~~~~sa~~~~~----------i~~~~~~l~~~~~~ 172 (208)
++++++||++|.+ +.++++.|.+.++.
T Consensus 158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5899999999764 88999999988864
No 156
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=7.2e-21 Score=158.20 Aligned_cols=158 Identities=21% Similarity=0.204 Sum_probs=106.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEEC----------------CEEEEEEEEEcCCchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------------DRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~G~~~ 70 (208)
++.++|+|+|++++|||||+++|++..+........+.+......... .....++||||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 456899999999999999999998765532211111111111111110 0112599999999999
Q ss_pred hhhchhhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC-------------H
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-------------I 134 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~-------------~ 134 (208)
|..++...+..+|++|+|+|+++ +++++.+.. +.. .++|+++++||+|+....... .
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~ 155 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence 99999988999999999999998 666554432 222 359999999999986432110 0
Q ss_pred ----------HHHHHHHHhcC---------------CeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 135 ----------EEGEAKSRELN---------------VMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 135 ----------~~~~~~~~~~~---------------~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
.+......+.+ .+++++||++|.|+.+++++|...++
T Consensus 156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 01111122222 38999999999999999999988765
No 157
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=1.1e-20 Score=152.68 Aligned_cols=151 Identities=19% Similarity=0.184 Sum_probs=102.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC--CCC----------CC---------------------CccceeeEEEEEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--DNT----------YQ---------------------ATIGIDFLSKTMYL 53 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~--~~~----------~~---------------------~~~~~~~~~~~~~~ 53 (208)
...++|+++|++++|||||+++|++... ... .. ...+++.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3468999999999999999999986531 100 00 11222222233333
Q ss_pred CCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC--
Q 028507 54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-- 131 (208)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~-- 131 (208)
.+ ..+.||||||+++|...+..++..+|++|+|+|+++... ....+++..+.. .+ ..|+++++||+|+.+...
T Consensus 102 ~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~-~~-~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 102 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASL-LG-IKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHH-TT-CCEEEEEEECTTTTTSCHHH
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH-cC-CCeEEEEEEcCcCCcccHHH
Confidence 33 679999999999998888888999999999999997532 223333333332 22 135899999999975321
Q ss_pred C--CHHHHHHHHHhcC-----CeEEEeecCCCCChHHH
Q 028507 132 V--SIEEGEAKSRELN-----VMFIETSAKAGFNIKPL 162 (208)
Q Consensus 132 ~--~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~ 162 (208)
+ ...+...++..++ ++++++||++|.|+.++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1 1344556666677 68999999999999874
No 158
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=4e-22 Score=157.24 Aligned_cols=157 Identities=17% Similarity=0.273 Sum_probs=85.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCC--------CCccceeeEEEEEEECCEEEEEEEEEcCCc-------hhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~ 71 (208)
..++|+|+|++|+|||||+++|++... .... .++.+.......+...+..+.+.+|||||+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 468999999999999999999876443 2222 134444443344444566678999999998 555
Q ss_pred hhchh-------hhccCC-------------cEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 72 RSLIP-------SYIRDS-------------SVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 72 ~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
..+.. .++..+ |+++++++.+ ..++..+. .++..+ ...+|+++|+||+|+...+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 55544 443332 3444444432 23444443 233322 3569999999999997765
Q ss_pred CCCH--HHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHHc
Q 028507 131 QVSI--EEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
++.. .++..++..++++++++||+++.+ .+.|..+...+
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 5443 466777777889999999999988 66666655544
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=8.7e-21 Score=155.92 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=83.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCC----------------------CCCCCccceeeEEEEEEECCEEEEEEEEEc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD----------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (208)
+..+|+|+|++|+|||||+++|+..... ....+..++......+.+.+ +.++||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 4579999999999999999999621100 00012233344445555665 67999999
Q ss_pred CCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
||+.+|...+..+++.+|++|+|+|+++.........|. .+. ..++|+++|+||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999765555544332 222 24599999999999854
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.84 E-value=4e-21 Score=151.83 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=106.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEe
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 90 (208)
+|+++|++++|||||+++|+ ....+++.....+..++ ..+.||||||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 22222333333343444 569999999999998877788899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCcccCCC--HHHHHHHHHhcC---CeEEE--eecCC---CCC
Q 028507 91 VASRQSFLNTSKWIDEVRTERGSDVII-VLVGN-KTDLVEKRQVS--IEEGEAKSRELN---VMFIE--TSAKA---GFN 158 (208)
Q Consensus 91 ~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~sa~~---~~~ 158 (208)
++ ....+..+++..+... ++|. ++++| |+|+ +..... .++...++...+ +++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 53 3344445555544432 3776 88889 9998 533221 144555555443 68999 99999 999
Q ss_pred hHHHHHHHHHHcCC
Q 028507 159 IKPLFRKIAAALPG 172 (208)
Q Consensus 159 i~~~~~~l~~~~~~ 172 (208)
++++++.|.+.++.
T Consensus 167 i~~L~~~l~~~~~~ 180 (370)
T 2elf_A 167 VDELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccc
Confidence 99999999988754
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=2.6e-21 Score=155.10 Aligned_cols=162 Identities=20% Similarity=0.196 Sum_probs=112.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC--------cCCCC-------CCCccceeeEEEEEEECCEEEEEEEEEcCCchhh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD--------KFDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
.+.++|+++|++++|||||+++|++. .+... .....+++.......+......+.||||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 46799999999999999999999863 11110 0011222222223333333367999999999999
Q ss_pred hhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCcccC---CCHHHHHHHHHhcC--
Q 028507 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN-- 145 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~~---~~~~~~~~~~~~~~-- 145 (208)
.......+..+|++|+|+|+++... ....+++..+.. .++| +++++||+|+.+... ....+...++..++
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 8888888999999999999987543 333445544433 2478 889999999874211 11234555666655
Q ss_pred ---CeEEEeecCCCCC------------------hHHHHHHHHHHcCC
Q 028507 146 ---VMFIETSAKAGFN------------------IKPLFRKIAAALPG 172 (208)
Q Consensus 146 ---~~~~~~sa~~~~~------------------i~~~~~~l~~~~~~ 172 (208)
++++++||++|.| +.++++.|...++.
T Consensus 165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 6899999999987 78888888887763
No 162
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.84 E-value=2.2e-20 Score=146.41 Aligned_cols=122 Identities=18% Similarity=0.254 Sum_probs=100.6
Q ss_pred EEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhc-CCCCcE
Q 028507 49 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVII 117 (208)
Q Consensus 49 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~pi 117 (208)
..+.+++ +.+.+||++|++.++..|..++++++++|+|||+++ .+++.....|+..+.... ..++|+
T Consensus 186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 3344444 789999999999999999999999999999999998 456888888888886642 256999
Q ss_pred EEEEeCCCCCccc---------------CCCHHHHHHHHH-----------hcCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 118 VLVGNKTDLVEKR---------------QVSIEEGEAKSR-----------ELNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 118 ivv~nK~D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
++++||+|+.+++ ....+++..++. ..++.+++|||+++.|+.++|+++.+.+.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9999999985432 356778877776 35678999999999999999999998874
Q ss_pred C
Q 028507 172 G 172 (208)
Q Consensus 172 ~ 172 (208)
+
T Consensus 344 ~ 344 (353)
T 1cip_A 344 K 344 (353)
T ss_dssp H
T ss_pred H
Confidence 3
No 163
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.84 E-value=4.5e-20 Score=142.69 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=99.8
Q ss_pred EEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcC-CCCc
Q 028507 48 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVI 116 (208)
Q Consensus 48 ~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~p 116 (208)
...+..++ +++.+||++|++.++..|..++++++++|+|||++ +.+++.....|+..+..... .++|
T Consensus 159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence 34444554 78999999999999999999999999999999664 56778777777777765432 5799
Q ss_pred EEEEEeCCCCCccc----------------CCCHHHHHHHH----------HhcCCeEEEeecCCCCChHHHHHHHHHHc
Q 028507 117 IVLVGNKTDLVEKR----------------QVSIEEGEAKS----------RELNVMFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 117 iivv~nK~D~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
+++++||+|+.+++ ..+.+++..++ ...++.+++|||+++.|++.+|..+.+.+
T Consensus 237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 99999999986644 45677777773 34567889999999999999999999988
Q ss_pred CCC
Q 028507 171 PGM 173 (208)
Q Consensus 171 ~~~ 173 (208)
.+.
T Consensus 317 l~~ 319 (327)
T 3ohm_A 317 LQL 319 (327)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.84 E-value=2.4e-22 Score=163.41 Aligned_cols=155 Identities=22% Similarity=0.236 Sum_probs=108.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 86 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 86 (208)
.+..+|+++|++++|||||+++|....+.....++.+.+.....+.+++ ..++||||||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3568999999999999999999987665443333333333222333344 46899999999999999999999999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc--CCCHH--HHHHHHHhcC--CeEEEeecCCCC
Q 028507 87 VVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIE--EGEAKSRELN--VMFIETSAKAGF 157 (208)
Q Consensus 87 ~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~sa~~~~ 157 (208)
+|+|+++ +++.+.+ ..+. ..++|+++++||+|+.+.. .+... +...++..++ ++++++||++|.
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHH----HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 9999987 3333322 2222 2358999999999996432 11000 0001112233 689999999999
Q ss_pred ChHHHHHHHHHHc
Q 028507 158 NIKPLFRKIAAAL 170 (208)
Q Consensus 158 ~i~~~~~~l~~~~ 170 (208)
|+.++|++|....
T Consensus 153 gI~eLle~I~~~~ 165 (501)
T 1zo1_I 153 GIDELLDAILLQA 165 (501)
T ss_dssp TCTTHHHHTTTTC
T ss_pred Ccchhhhhhhhhh
Confidence 9999999987643
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.6e-21 Score=160.14 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=101.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCC-------------------------------CCccceeeEEEEEEECC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-------------------------------QATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 55 (208)
...++|+++|++|+|||||+++|++....... .+.++++.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 35789999999999999999999865321111 12333343344444444
Q ss_pred EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChh---hH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
+.+.||||||+++|......++..+|++|+|+|+++.. ++ .........+....+ ..|+++|+||+|+.+.+
T Consensus 245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg-i~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-IHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT-CCEEEEEEECTTTTTTC
T ss_pred --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC-CCeEEEEEecccccchh
Confidence 57999999999999999999999999999999998632 11 111111222222221 24599999999997633
Q ss_pred CCCH----HHHHHHHHhcC-----CeEEEeecCCCCChHHH
Q 028507 131 QVSI----EEGEAKSRELN-----VMFIETSAKAGFNIKPL 162 (208)
Q Consensus 131 ~~~~----~~~~~~~~~~~-----~~~~~~sa~~~~~i~~~ 162 (208)
.... .+...++...+ ++++++||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2222 22333333333 58999999999999865
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=1.4e-21 Score=159.07 Aligned_cols=155 Identities=17% Similarity=0.250 Sum_probs=90.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC--cCCC-----------------------------CCCCccceeeEEEEEEECC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDN-----------------------------TYQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 55 (208)
.+.++|+++|+.++|||||+++|+.. .+.. +.....+++.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 35689999999999999999999742 2210 0011222222223344444
Q ss_pred EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChh---hHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCccc-
Q 028507 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR- 130 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~- 130 (208)
..+.||||||+++|...+...+..+|++|+|+|+++.. +|+....+...+......++| +++++||+|+.+..
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 57999999999999998888899999999999999752 232212222222222223577 99999999985421
Q ss_pred -----CCCHHHHHHHHHhc-------CCeEEEeecCCCCChHHHH
Q 028507 131 -----QVSIEEGEAKSREL-------NVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 131 -----~~~~~~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~ 163 (208)
.....+...++... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11123455556555 3579999999999998754
No 167
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=5.6e-21 Score=155.09 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=101.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC--cCCCC-----------------------------CCCccceeeEEEEEEECC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT-----------------------------YQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 55 (208)
.+.++|+++|++++|||||+++|++. .+... .....+++.....+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46799999999999999999999864 22110 012223333333444444
Q ss_pred EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCc
Q 028507 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFL---NTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~ 128 (208)
..+.||||||+++|.......+..+|++|+|+|+++.. +|+ ...+.+..+. . .++| +++++||+|+.+
T Consensus 85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~--~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-T--LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-H--TTCCEEEEEEECGGGGT
T ss_pred --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-H--cCCCeEEEEEEcccccc
Confidence 67999999999999998888999999999999998642 221 2222222222 2 2465 899999999973
Q ss_pred ccC----CCHHHHHHHHHhcC-----CeEEEeecCCCCChHH
Q 028507 129 KRQ----VSIEEGEAKSRELN-----VMFIETSAKAGFNIKP 161 (208)
Q Consensus 129 ~~~----~~~~~~~~~~~~~~-----~~~~~~sa~~~~~i~~ 161 (208)
... ....+...++..++ ++++++||++|.|+.+
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 211 11234455555555 6899999999999864
No 168
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=2e-19 Score=136.14 Aligned_cols=127 Identities=13% Similarity=0.160 Sum_probs=90.1
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhcc----
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR---- 80 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---- 80 (208)
.++.++|+++|.+|+|||||+++|++..+. ....+.++.......+..++ ..+.||||||+.++......+++
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~ 110 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKG 110 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHH
Confidence 357899999999999999999999988752 23333334444555566666 47999999999877655444432
Q ss_pred -----CCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCcccCCCHH
Q 028507 81 -----DSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQVSIE 135 (208)
Q Consensus 81 -----~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~--~piivv~nK~D~~~~~~~~~~ 135 (208)
++|++++|++++... +.. ...|+..+....+.+ .|+++|+||+|+.+......+
T Consensus 111 ~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE 172 (262)
T ss_dssp HTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred HHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence 789999999987644 333 346777776665533 489999999999655444433
No 169
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.82 E-value=8.6e-20 Score=142.98 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=92.5
Q ss_pred EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 028507 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKT 124 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~ 124 (208)
+.+.+.+||++|++.++..+..++++++++|+|||++ +.++++....|+..+.... ..++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5689999999999999999999999999999999998 7789999999998887643 2679999999999
Q ss_pred CCCcccC--C-------------------CHHHHHHHHHh----------------cCCeEEEeecCCCCChHHHHHHHH
Q 028507 125 DLVEKRQ--V-------------------SIEEGEAKSRE----------------LNVMFIETSAKAGFNIKPLFRKIA 167 (208)
Q Consensus 125 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~sa~~~~~i~~~~~~l~ 167 (208)
|+.+++. . ..+++..++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9854322 1 13555555332 123568999999999999999999
Q ss_pred HHcC
Q 028507 168 AALP 171 (208)
Q Consensus 168 ~~~~ 171 (208)
+.+.
T Consensus 341 ~~I~ 344 (354)
T 2xtz_A 341 ETLR 344 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 170
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=4e-20 Score=160.80 Aligned_cols=162 Identities=16% Similarity=0.124 Sum_probs=109.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCc-------CCC-------CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDK-------FDN-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 72 (208)
.+.++|+++|++++|||||+++|++.. +.. ......+++.....+.++.....+.||||||+++|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 467999999999999999999998631 000 011122222222222333334679999999999999
Q ss_pred hchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCcccCC---CHHHHHHHHHhcC---
Q 028507 73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN--- 145 (208)
Q Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~--- 145 (208)
......+..+|++|+|+|+++... .+..+++..+... ++| +++++||+|+.+..+. ...++..++..++
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 888888999999999999987532 2233444444332 478 7899999999752211 1234556666665
Q ss_pred --CeEEEeecCCC--------CChHHHHHHHHHHcCC
Q 028507 146 --VMFIETSAKAG--------FNIKPLFRKIAAALPG 172 (208)
Q Consensus 146 --~~~~~~sa~~~--------~~i~~~~~~l~~~~~~ 172 (208)
++++++||++| .++.++++.|...++.
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 58999999999 4688999999887753
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.81 E-value=3e-21 Score=160.82 Aligned_cols=161 Identities=20% Similarity=0.238 Sum_probs=89.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC-------------------------------CCCCCCccceeeEEEEEEECC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYLED 55 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (208)
...++|+++|++++|||||+++|++... .....++++++.....+...
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 4568999999999999999999964210 11112333334333333333
Q ss_pred EEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChh---hH--HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCcc
Q 028507 56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF--LNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEK 129 (208)
Q Consensus 56 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~ 129 (208)
...+.||||||+.+|...+...+..+|++|+|+|+++.. ++ ......+..+.... ++| +++|+||+|+.+.
T Consensus 254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT
T ss_pred -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc
Confidence 367999999999999988888899999999999998532 12 11111111222222 365 8999999998652
Q ss_pred cCCC----HHHHHHHH-HhcCC-----eEEEeecCCCCChH--------------HHHHHHHHHcC
Q 028507 130 RQVS----IEEGEAKS-RELNV-----MFIETSAKAGFNIK--------------PLFRKIAAALP 171 (208)
Q Consensus 130 ~~~~----~~~~~~~~-~~~~~-----~~~~~sa~~~~~i~--------------~~~~~l~~~~~ 171 (208)
.... ..+...++ ...++ +++++||++|.|+. .+++.|...++
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 2111 22333444 44454 79999999999998 68888877654
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1.4e-19 Score=132.35 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=99.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh----------hhhchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIP 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~ 76 (208)
.+..+|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ .+.+||+||... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4568999999999999999999998774333344444443333333333 478999999732 222233
Q ss_pred hhc---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC--CCHHHHHHHHHhcC--Ce
Q 028507 77 SYI---RDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELN--VM 147 (208)
Q Consensus 77 ~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~~ 147 (208)
.++ ..++++++++|++++.+... +..|+ . . .++|+++++||+|+.+..+ .....+..++...+ +.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~-~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---V-D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---H-H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---H-H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence 333 57899999999987644332 22222 1 2 3588999999999865422 11344555555554 47
Q ss_pred EEEeecCCCCChHHHHHHHHHHcCC
Q 028507 148 FIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 148 ~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
++++|++++.++++++++|.+.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999987754
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.81 E-value=3.7e-20 Score=142.64 Aligned_cols=160 Identities=19% Similarity=0.208 Sum_probs=102.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCC------CCCc----------------------ccee-------------
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT------YQAT----------------------IGID------------- 45 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~------~~~~----------------------~~~~------------- 45 (208)
...++|+|+|.+|+|||||+|+|++..+... ..++ ++.+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999998876321 1122 0000
Q ss_pred ----------eEEEEEEECCEEEEEEEEEcCCch-------------hhhhchhhhccCCcEEE-EEEeCCChhhHHHHH
Q 028507 46 ----------FLSKTMYLEDRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAV-VVYDVASRQSFLNTS 101 (208)
Q Consensus 46 ----------~~~~~~~~~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 101 (208)
.....+... ....+.||||||.. .+..+...++..++.+| +|+|+++..+.....
T Consensus 104 ~g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp CSSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred cccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 000001111 02469999999963 34556667788888776 799998653333322
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh--cC-CeEEEeecCCCCChHHHHHHHHHHc
Q 028507 102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE--LN-VMFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 102 ~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
.++..+ ...+.|+++|+||+|+.+............... .+ .+++++||+++.|+++++++|....
T Consensus 183 ~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 183 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 333333 234689999999999976544333322211111 13 3688999999999999999988743
No 174
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.80 E-value=1.5e-19 Score=140.24 Aligned_cols=116 Identities=22% Similarity=0.267 Sum_probs=93.9
Q ss_pred EEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCC
Q 028507 57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125 (208)
Q Consensus 57 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~~~-~~~piivv~nK~D 125 (208)
.+.+.+||++|++.++..|..++++++++|+|||++ +.+++.....|+..+..... .++|+++++||+|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D 239 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD 239 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence 378999999999999999999999999999999998 67788888888888765433 6799999999999
Q ss_pred CCccc---------------CCCHHHHHHHHHh-c--------------------------CCeEEEeecCCCCChHHHH
Q 028507 126 LVEKR---------------QVSIEEGEAKSRE-L--------------------------NVMFIETSAKAGFNIKPLF 163 (208)
Q Consensus 126 ~~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~sa~~~~~i~~~~ 163 (208)
+.+++ ....+++..++.. + .+.++++||++..+++.+|
T Consensus 240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF 319 (340)
T 4fid_A 240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319 (340)
T ss_dssp HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence 86421 1234555444332 2 3678999999999999999
Q ss_pred HHHHHHcCC
Q 028507 164 RKIAAALPG 172 (208)
Q Consensus 164 ~~l~~~~~~ 172 (208)
..+.+.+.+
T Consensus 320 ~~v~~~Il~ 328 (340)
T 4fid_A 320 MLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=6.7e-19 Score=148.69 Aligned_cols=121 Identities=15% Similarity=0.143 Sum_probs=82.0
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhcCcCCCCC------------------CCccceeeEEEEEEECCEEEEEEE
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------------------QATIGIDFLSKTMYLEDRTVRLQL 62 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i 62 (208)
|......+..+|+|+|+.|+|||||+++|++....... ....++......+.... +.++|
T Consensus 1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nl 78 (665)
T 2dy1_A 1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFL 78 (665)
T ss_dssp -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEE
T ss_pred CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEE
Confidence 45555556789999999999999999999843321000 01222233333444444 67999
Q ss_pred EEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 028507 63 WDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~ 127 (208)
|||||+.+|......++..+|++++|+|+++.-... ...++..+.. .++|+++++||+|+.
T Consensus 79 iDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 79 LDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred EeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence 999999999988889999999999999987543222 2233333333 359999999999986
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.79 E-value=7.4e-19 Score=140.29 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=111.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh----hhch---hhhccCCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLI---PSYIRDSS 83 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~d 83 (208)
.|+|+|++|+|||||+++|.+........+.++.......+..++ ...+.+||+||.... ..+. ...+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 579999999999999999997754222223333333333444443 246899999996421 1111 22356799
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 028507 84 VAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 161 (208)
.+++++|++ ...+..+..+..++..... ...|.++|+||+|+... ....+....+...+++++.+||+++.++++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 5567777777666654421 24888999999998654 223444455556678999999999999999
Q ss_pred HHHHHHHHcCCCc
Q 028507 162 LFRKIAAALPGME 174 (208)
Q Consensus 162 ~~~~l~~~~~~~~ 174 (208)
++++|.+.+.+..
T Consensus 315 L~~~i~~~l~~~~ 327 (416)
T 1udx_A 315 LKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999886544
No 177
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=5.1e-18 Score=128.93 Aligned_cols=125 Identities=12% Similarity=0.093 Sum_probs=85.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchh-------h-
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-------S- 77 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~- 77 (208)
.+.++|+++|.+|+|||||+|+|++..+. ....+..+...........+ +.+.||||||+.++..... .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 35799999999999999999999987753 22223333333334444454 6799999999876543222 1
Q ss_pred -hccCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCcccCCCH
Q 028507 78 -YIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQVSI 134 (208)
Q Consensus 78 -~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~--~piivv~nK~D~~~~~~~~~ 134 (208)
....+|++++|+|++.. ++.. ...|+..+....+.+ +|+++|+||+|+.+......
T Consensus 115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~ 174 (270)
T 1h65_A 115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY 174 (270)
T ss_dssp TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence 13479999999998753 3333 246777776655433 69999999999976554333
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.77 E-value=5.9e-18 Score=143.44 Aligned_cols=116 Identities=21% Similarity=0.268 Sum_probs=83.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCc--C------CC----------CCCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDK--F------DN----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~--~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
.+..+|+|+|++|+|||||+++|+... + .. ......++......+.+.+ +.++||||||+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence 457899999999999999999998421 1 00 0011222333334445554 67999999999
Q ss_pred hhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
.+|...+..++..+|++|+|+|+++.........|.. +.. .++|+++++||+|+..
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9999989999999999999999998766666555543 322 3599999999999864
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.77 E-value=1.3e-19 Score=144.28 Aligned_cols=85 Identities=18% Similarity=0.202 Sum_probs=47.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEE---------------------EECC-EEEEEEEEEcCC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM---------------------YLED-RTVRLQLWDTAG 67 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~i~D~~G 67 (208)
++|+|+|.+|+|||||+|+|++.+......+.++.+...... .+++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999877433333333333222211 1122 246899999999
Q ss_pred chhh----hhchh---hhccCCcEEEEEEeCCCh
Q 028507 68 QERF----RSLIP---SYIRDSSVAVVVYDVASR 94 (208)
Q Consensus 68 ~~~~----~~~~~---~~~~~~d~~i~v~d~~~~ 94 (208)
.... ..+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7542 22222 457899999999999875
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=1.5e-17 Score=136.85 Aligned_cols=115 Identities=22% Similarity=0.208 Sum_probs=78.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc--CCC--------------------CCCCccceeeEEEEEEECCEEEEEEEEEc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK--FDN--------------------TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~--~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (208)
+.++|+|+|++|+|||||+++|+... +.. ......++......+.+.+ +.++||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence 56899999999999999999998531 100 0011112222233444454 67999999
Q ss_pred CCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
||+.+|......++..+|++|+|+|+++..... ...++.. ....++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~---~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEV---TRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHH---HTTTTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHH---HHHcCCCEEEEEcCcCCcc
Confidence 999999888888899999999999998643211 1222222 2234699999999999864
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.76 E-value=6.5e-18 Score=143.25 Aligned_cols=162 Identities=11% Similarity=0.158 Sum_probs=107.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCC-CCCCCccceee----------------------------------------
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDF---------------------------------------- 46 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~---------------------------------------- 46 (208)
..++|+|+|.+|+|||||+|+|++..+. ....+++....
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4689999999999999999999987753 23334331100
Q ss_pred -------------EEEEEEECCEE--EEEEEEEcCCchhh---hhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028507 47 -------------LSKTMYLEDRT--VRLQLWDTAGQERF---RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR 108 (208)
Q Consensus 47 -------------~~~~~~~~~~~--~~~~i~D~~G~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 108 (208)
....+..+... ..+.||||||.... ......++..+|++|+|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00011111100 25899999997653 3455667899999999999998777666655544442
Q ss_pred HhcCCCCcEEEEEeCCCCCcccCCCHH----------HHHH-----HHHh--------cCCeEEEeecC-----------
Q 028507 109 TERGSDVIIVLVGNKTDLVEKRQVSIE----------EGEA-----KSRE--------LNVMFIETSAK----------- 154 (208)
Q Consensus 109 ~~~~~~~piivv~nK~D~~~~~~~~~~----------~~~~-----~~~~--------~~~~~~~~sa~----------- 154 (208)
. .+.|+++|+||+|+........+ .... .... ...+++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 35789999999998654311111 1111 1111 12379999999
Q ss_pred ---CCCChHHHHHHHHHHcCC
Q 028507 155 ---AGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 155 ---~~~~i~~~~~~l~~~~~~ 172 (208)
++.|+.++++.|.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887743
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.76 E-value=3.1e-19 Score=137.47 Aligned_cols=160 Identities=16% Similarity=0.236 Sum_probs=84.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC-cCCCCCC--------CccceeeEEEEEEECCEEEEEEEEEcCCc-------hhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD-KFDNTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF 71 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-------~~~ 71 (208)
-.++|+|+|++|+|||||+++|.+. .++.... ++.........+...+....+++||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999998875 4433221 11111111222222333467999999997 444
Q ss_pred hhchh-------hhcc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 72 RSLIP-------SYIR-------------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 72 ~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
..+.. .++. .+++++++.+.+. .+++.+. ...+... ...+++++|+||.|+...++
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCHHH
Confidence 43332 2222 2344555544332 1233322 1222222 24589999999999976543
Q ss_pred C--CHHHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHHcCC
Q 028507 132 V--SIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 132 ~--~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
+ ..+++..++..++++++++||+++ +++++|..+.+.+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 2 245777888889999999999999 999999999887743
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=6e-19 Score=139.32 Aligned_cols=155 Identities=21% Similarity=0.224 Sum_probs=103.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeE----------------------------------------
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL---------------------------------------- 47 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 47 (208)
.-.+|+|+|++|+|||||+++|++..+........+....
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 3459999999999999999999998763322211110000
Q ss_pred --------------EEEEEECCEEEEEEEEEcCCchhh-------------hhchhhhccCCcEEEEEEeCCChhhHHHH
Q 028507 48 --------------SKTMYLEDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVVVYDVASRQSFLNT 100 (208)
Q Consensus 48 --------------~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 100 (208)
...+... ....+.+|||||...+ ..+...++..+|++|+|+|.++.+...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-- 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-- 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred HhcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence 0001111 1135899999997765 556677899999999999876433222
Q ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHHHHHH
Q 028507 101 SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 165 (208)
Q Consensus 101 ~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~ 165 (208)
..|+..+......+.|+++|+||+|+.+...............++.+++.+++.++.++++.+..
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 23444444444456899999999999876655555555555566788999999998877655443
No 184
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=138.98 Aligned_cols=160 Identities=16% Similarity=0.242 Sum_probs=83.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCC--------CCccceeeEEEEEEECCEEEEEEEEEcCCchhhh-------
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------- 72 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------- 72 (208)
-.++|+|+|++|+|||||++.|.+..+.... .++.........+...+....+++||++|...+.
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 3578999999999999999999987653211 1122111111112223333479999999976431
Q ss_pred h------------------chhhhccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCcccCC
Q 028507 73 S------------------LIPSYIRDSSVAVVVYDVASR-QSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (208)
Q Consensus 73 ~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~piivv~nK~D~~~~~~~ 132 (208)
. +.+.++.++++.+++|..+.. .+++.+. .|+..+. ..+|+|+|+||+|+...+++
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHH
Confidence 1 112334555554555544321 2334333 4555553 36999999999999766554
Q ss_pred CH--HHHHHHHHhcCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 133 SI--EEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
.. .++..++..++++++++|+.++.++.++|..+...++
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 43 5677778888999999999999999999988887765
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=3.6e-18 Score=132.47 Aligned_cols=163 Identities=20% Similarity=0.240 Sum_probs=98.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCC-CCCcccee---eEEE---------------------------------
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGID---FLSK--------------------------------- 49 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~-~~~~~~~~---~~~~--------------------------------- 49 (208)
....+|+|+|.+|+|||||+|+|++..+... ....+... ....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4568999999999999999999998876221 11111000 0000
Q ss_pred ----------------------EEEECCEEEEEEEEEcCCchh-------------hhhchhhhccCCcEEEEEEeCCCh
Q 028507 50 ----------------------TMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVYDVASR 94 (208)
Q Consensus 50 ----------------------~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~ 94 (208)
.+... ....+.||||||... +......++..+|++|+|+|.++.
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSP-HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEET-TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecC-CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 00111 114699999999753 445566778999999999997432
Q ss_pred hhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecC---C---CCChHHHHHHHH
Q 028507 95 QSF-LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK---A---GFNIKPLFRKIA 167 (208)
Q Consensus 95 ~s~-~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~---~---~~~i~~~~~~l~ 167 (208)
... .....+...+ ...+.|+++|+||+|+.+...............++..++++++. + +.|+.++++.+.
T Consensus 181 ~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~ 257 (315)
T 1jwy_B 181 DLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI 257 (315)
T ss_dssp CSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred chhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence 211 1111222222 23468999999999997655422333221111222456666655 4 788999999988
Q ss_pred HHcCCC
Q 028507 168 AALPGM 173 (208)
Q Consensus 168 ~~~~~~ 173 (208)
..++..
T Consensus 258 ~~~~~~ 263 (315)
T 1jwy_B 258 LYFKNH 263 (315)
T ss_dssp HHHHTC
T ss_pred HHHhCC
Confidence 887643
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.75 E-value=3.6e-17 Score=138.66 Aligned_cols=116 Identities=22% Similarity=0.264 Sum_probs=83.3
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhc--CcCCC-----------C-----CCCccceeeEEEEEEECCEEEEEEEEEcCCc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMY--DKFDN-----------T-----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~--~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 68 (208)
.+..+|+|+|++|+|||||+++|+. +.+.. . ..+..++......+.+.+ +.++||||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCC
Confidence 4578999999999999999999984 22210 0 012222333334455555 67999999999
Q ss_pred hhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
.+|...+..+++.+|++|+|+|+++..+......|.. +.. .++|+++|+||+|+..
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 9998888889999999999999998666555554443 333 3589999999999864
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.75 E-value=5.3e-17 Score=137.80 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=82.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC--cCCCC----------------CCCccceeeEEEEEEEC-----CEEEEEEEE
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT----------------YQATIGIDFLSKTMYLE-----DRTVRLQLW 63 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~--~~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~i~ 63 (208)
.+..+|+|+|+.|+|||||+++|+.. .+... .....++......+.+. +..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999999742 11110 01112222222333333 234789999
Q ss_pred EcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
||||+.+|...+..+++.+|++|+|+|+++.........|.. .. ..++|+++++||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCccc
Confidence 999999999888999999999999999997644444333322 22 23599999999999864
No 188
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.75 E-value=1.4e-18 Score=133.94 Aligned_cols=135 Identities=18% Similarity=0.149 Sum_probs=109.7
Q ss_pred HHHHHhhcCcCC-CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChh-hHHHHH
Q 028507 24 SIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTS 101 (208)
Q Consensus 24 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 101 (208)
+|+.++..+.|. ..+.||.+..+. ..+..++ ++.+||+ ++++..+++.+++++|++|+|||+++++ ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888888988 788899885443 3322222 6899999 8899999999999999999999999987 688899
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcC--CeEEEeecCCCCChHHHHHHHHHH
Q 028507 102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 102 ~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
.|+..+.. .++|+++|+||+|+.+.+.+ ++...++..++ +.++++||++|.|++++|..+...
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 99987765 36999999999999765432 44666777777 899999999999999999887653
No 189
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.72 E-value=3.4e-17 Score=128.72 Aligned_cols=122 Identities=18% Similarity=0.215 Sum_probs=93.0
Q ss_pred EEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhc-CCCCcE
Q 028507 49 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVII 117 (208)
Q Consensus 49 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~pi 117 (208)
..+.+++ +.+.+||++|++.++..|..++++++++|||||+++ .+++.....|+..+.... ..++|+
T Consensus 194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 4455554 789999999999999999999999999999999998 678999888888886642 357999
Q ss_pred EEEEeCCCCCccc----------------CCCHHHHHHHHH-----------hcCCeEEEeecCCCCChHHHHHHHHHHc
Q 028507 118 VLVGNKTDLVEKR----------------QVSIEEGEAKSR-----------ELNVMFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 118 ivv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
++++||+|+.+++ ..+.+++..++. ..++.+++|||+++.|+.++|+++.+.+
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 9999999986432 256677776651 3457899999999999999999999887
Q ss_pred CC
Q 028507 171 PG 172 (208)
Q Consensus 171 ~~ 172 (208)
.+
T Consensus 352 ~~ 353 (362)
T 1zcb_A 352 LH 353 (362)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 190
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.70 E-value=6.7e-17 Score=128.10 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=97.8
Q ss_pred EEEEECCEEEEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhc-CCCCcE
Q 028507 49 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVII 117 (208)
Q Consensus 49 ~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~~pi 117 (208)
..+.+++ +.+.|||++|++.++..|..++++++++|+|||+++ .++++....|+..+.... ..++|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 4455555 789999999999999999999999999999999998 889999999999987653 367999
Q ss_pred EEEEeCCCCCcccC---C---------------------------CHHHHHHHH-----Hh--------cCCeEEEeecC
Q 028507 118 VLVGNKTDLVEKRQ---V---------------------------SIEEGEAKS-----RE--------LNVMFIETSAK 154 (208)
Q Consensus 118 ivv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~sa~ 154 (208)
+||+||+|+.+++. + ...++..++ .. .++.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999854322 1 134555543 22 24577899999
Q ss_pred CCCChHHHHHHHHHHcC
Q 028507 155 AGFNIKPLFRKIAAALP 171 (208)
Q Consensus 155 ~~~~i~~~~~~l~~~~~ 171 (208)
++.||+++|..+.+.+.
T Consensus 368 d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHH
Confidence 99999999999988774
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.70 E-value=3.4e-16 Score=129.35 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=81.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC------------------cC----CCCCCCccceeeEEEEEEECCEEEEEEEEEc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD------------------KF----DNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 65 (208)
+.-+|+|+|+.++|||||..+|+.. .+ +.+....+++......+.+++ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 4578999999999999999999621 01 123334555555666777777 67999999
Q ss_pred CCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
|||.+|..-....++.+|++|+|+|+.+.=......-|.. ... .++|+++++||+|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH---hCCceEEEEecccchh
Confidence 9999999999999999999999999985322222223322 222 3599999999999853
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=8.8e-16 Score=120.20 Aligned_cols=146 Identities=12% Similarity=0.083 Sum_probs=91.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCE---------------EEEEEEEEcCCchhhh-
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR- 72 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~- 72 (208)
.++|+|+|.+|+|||||+|+|++..+.....+.++++.....+.+++. ...+.+||+||...+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 379999999999999999999987754333333333322223334432 1469999999987643
Q ss_pred ---hc---hhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHH-----------------------------
Q 028507 73 ---SL---IPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEV----------------------------- 107 (208)
Q Consensus 73 ---~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i----------------------------- 107 (208)
.+ ...+++.+|++++|+|+++. +++.++..+..++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 22 23347899999999999852 2333333222211
Q ss_pred -----------HH-------------------h-cCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEeecC
Q 028507 108 -----------RT-------------------E-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154 (208)
Q Consensus 108 -----------~~-------------------~-~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 154 (208)
.. + ....+|+++++|+.|..-........+..++...+.+++++||+
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 00 0 11248999999999853212233566677777788999999965
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.69 E-value=7.8e-17 Score=118.69 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=95.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCC------CCccce--------eeEEEEEEE----------------CCEEE
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATIGI--------DFLSKTMYL----------------EDRTV 58 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~------~~~~~~--------~~~~~~~~~----------------~~~~~ 58 (208)
..+|+|+|.+|+|||||+++|......... .+..+. ......+.. .....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 478999999999999999999865321110 111000 000011111 00124
Q ss_pred EEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHH
Q 028507 59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE 138 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~ 138 (208)
.+.+|||+|...... .+....+.+++|+|+++... ....+... . +.|+++|+||+|+.+.......+..
T Consensus 110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---RVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhh---h---hcCCEEEEecccCCcchhhHHHHHH
Confidence 688999998511111 11125688999999875431 11111111 1 2788999999998654444566666
Q ss_pred HHHHhc--CCeEEEeecCCCCChHHHHHHHHHHcCCCc
Q 028507 139 AKSREL--NVMFIETSAKAGFNIKPLFRKIAAALPGME 174 (208)
Q Consensus 139 ~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~~~~ 174 (208)
..+... +++++++|+++|.|+.++|++|.+.+....
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 666654 468999999999999999999998876543
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=2.5e-17 Score=129.71 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=94.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCC------CCcc----------------------cee-------------
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATI----------------------GID------------- 45 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~------~~~~----------------------~~~------------- 45 (208)
...++|+|+|.+|+|||||+|+|++..+.... .|+. +.+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999998763211 1210 000
Q ss_pred --------e--EEEEEEECCEEEEEEEEEcCCch-------------hhhhchhhhccCCc-EEEEEEeCCChhhHHHHH
Q 028507 46 --------F--LSKTMYLEDRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSS-VAVVVYDVASRQSFLNTS 101 (208)
Q Consensus 46 --------~--~~~~~~~~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 101 (208)
. ....+... ....+.||||||.. .+..+...++...+ ++++|.|++.. +...
T Consensus 109 ~g~~~gi~~~~~~~~i~~~-~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~- 184 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANS- 184 (353)
T ss_dssp HTTTTCCCCCCEEEEEEET-TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGC-
T ss_pred cccCCCcccCceEEEEecC-CCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchh-
Confidence 0 00011111 12469999999953 34455666666555 55556676542 2221
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH--HHhcCC-eEEEeecCCCCChHHHHHHHHH
Q 028507 102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK--SRELNV-MFIETSAKAGFNIKPLFRKIAA 168 (208)
Q Consensus 102 ~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~--~~~~~~-~~~~~sa~~~~~i~~~~~~l~~ 168 (208)
.++..+......+.|+++|+||+|+.+............ ....++ .++.+||+++.|+.++++++..
T Consensus 185 ~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 185 DALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 122223333335689999999999976543222221110 111233 6788999999999999998876
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.63 E-value=5.3e-18 Score=125.41 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=91.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeE------------EEEEEEC-CEE-----------------
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL------------SKTMYLE-DRT----------------- 57 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 57 (208)
+.++|+|+|.+|+|||||+++|+...+...+.++...++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4589999999999999999999977654433333332221 1111111 100
Q ss_pred --EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHH
Q 028507 58 --VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE 135 (208)
Q Consensus 58 --~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~ 135 (208)
..+.++|++|.-... ..+-...+..+.++|......... .. ... . ..|.++|+||+|+.+.......
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~---~--~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KH-PGI---M--KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH---H--TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hh-hhH---h--hcCCEEEEeccccCchhHHHHH
Confidence 134555555521000 011122344566676532111000 00 011 1 2678999999998765545667
Q ss_pred HHHHHHHhc--CCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 136 EGEAKSREL--NVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 136 ~~~~~~~~~--~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
+...++..+ +++++++||++|.|++++|++|.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 777777654 579999999999999999999988764
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.63 E-value=3.5e-16 Score=129.39 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=81.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCC---CCCCCccceeeEEEE---------------------------------
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKT--------------------------------- 50 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~--------------------------------- 50 (208)
...++|+|+|.+|+|||||+|+|++..+. ....+++........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998763 233333321100000
Q ss_pred ---EEECCE-EEEEEEEEcCCchh-----------hhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC
Q 028507 51 ---MYLEDR-TVRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV 115 (208)
Q Consensus 51 ---~~~~~~-~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 115 (208)
..+.+. ...+.||||||... +......++..+|++|+|+|+++.........++..+.. .+.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence 000000 02589999999764 445566678899999999999875444445555555432 348
Q ss_pred cEEEEEeCCCCCccc
Q 028507 116 IIVLVGNKTDLVEKR 130 (208)
Q Consensus 116 piivv~nK~D~~~~~ 130 (208)
|+++|+||+|+....
T Consensus 220 pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 220 KIRVVLNKADMVETQ 234 (550)
T ss_dssp GEEEEEECGGGSCHH
T ss_pred CEEEEEECCCccCHH
Confidence 899999999987543
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.62 E-value=7.7e-15 Score=115.46 Aligned_cols=149 Identities=15% Similarity=0.113 Sum_probs=91.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECC-------------------EEEEEEEEEcCCchh
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-------------------RTVRLQLWDTAGQER 70 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~G~~~ 70 (208)
++|+++|.+|+|||||+++|++........+..+++.......+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999997654333333323222222222221 224699999999875
Q ss_pred hh-------hchhhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHH--------------------------
Q 028507 71 FR-------SLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEV-------------------------- 107 (208)
Q Consensus 71 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i-------------------------- 107 (208)
.. ......++.+|++++|+|+++. +.+..+..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 42 1223357899999999999851 2222221111111
Q ss_pred ---------HHh-----------------------c-CCCCcEEEEEeCCCC--Ccc-cCCCHHHHHHHHHhcCCeEEEe
Q 028507 108 ---------RTE-----------------------R-GSDVIIVLVGNKTDL--VEK-RQVSIEEGEAKSRELNVMFIET 151 (208)
Q Consensus 108 ---------~~~-----------------------~-~~~~piivv~nK~D~--~~~-~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
... . ...+|+++++|+.|. .+. +......+..++...+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 000 0 123799999999974 222 1233566777788888999999
Q ss_pred ecCCCCC
Q 028507 152 SAKAGFN 158 (208)
Q Consensus 152 sa~~~~~ 158 (208)
||+...+
T Consensus 242 SAk~E~e 248 (368)
T 2dby_A 242 SARLEAE 248 (368)
T ss_dssp CHHHHHH
T ss_pred echhHHH
Confidence 9887433
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.62 E-value=1.6e-16 Score=125.15 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=69.1
Q ss_pred EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCH--H
Q 028507 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--E 135 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~--~ 135 (208)
+.+.||||||... .....+..+|++|+|+|....+....+.. .+ ...|+++|+||+|+........ .
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~~-----~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---GV-----LELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---TS-----GGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---hH-----hhcCCEEEEECCCCcChhHHHHHHH
Confidence 5699999999433 22334588999999999875443322211 01 2368899999999864322111 1
Q ss_pred HHHHHHHh-------cCCeEEEeecCCCCChHHHHHHHHHHcCC
Q 028507 136 EGEAKSRE-------LNVMFIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 136 ~~~~~~~~-------~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
+....... ++.+++++||++|.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 11211111 24689999999999999999999988754
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.62 E-value=1.2e-15 Score=131.86 Aligned_cols=116 Identities=18% Similarity=0.255 Sum_probs=83.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc------------CC----CCCCCccceeeEEEEEEE--------------CCEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK------------FD----NTYQATIGIDFLSKTMYL--------------EDRT 57 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~------------~~----~~~~~~~~~~~~~~~~~~--------------~~~~ 57 (208)
+..||+|+|++|+|||||+++|+... +. .+..+..++......+.+ ++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 45799999999999999999998541 10 011111222222222222 3346
Q ss_pred EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 028507 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~ 127 (208)
+.++||||||+.+|...+..+++.+|++|+|+|+++..++.....|..... .++|+++++||+|+.
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 889999999999999999999999999999999998766666555544332 358999999999986
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.6e-14 Score=112.52 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=103.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh-------hhchhhhccC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRD 81 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~ 81 (208)
..+|+|||.||||||||+|+|++.+......+.++.+.....+.+.+ .++.++|+||...- .......++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 36899999999999999999998877666778888888888888888 56999999996431 1122345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCc--------ccCCCHHHHHHHHHhcCCeEEEe
Q 028507 82 SSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVE--------KRQVSIEEGEAKSRELNVMFIET 151 (208)
Q Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
+|++++|+|+++|. ........++.... -...|.++++||.|... ......++.......+.+..-++
T Consensus 150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv 227 (376)
T 4a9a_A 150 CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376)
T ss_dssp CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence 99999999999873 33333333333221 13467788889999632 23456677777776666532223
Q ss_pred ecCCCCChHHHHHH
Q 028507 152 SAKAGFNIKPLFRK 165 (208)
Q Consensus 152 sa~~~~~i~~~~~~ 165 (208)
-...+...+++.+.
T Consensus 228 ~~~~nv~eddl~d~ 241 (376)
T 4a9a_A 228 AFRCDATVDDLIDV 241 (376)
T ss_dssp EECSCCCHHHHHHH
T ss_pred eecccCCHHHHHHH
Confidence 33344455555443
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.58 E-value=5.5e-14 Score=119.73 Aligned_cols=116 Identities=20% Similarity=0.207 Sum_probs=78.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC--------cC----------CCCCCCccceeeEEEEEEECC-----EEEEEEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD--------KF----------DNTYQATIGIDFLSKTMYLED-----RTVRLQLWD 64 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~D 64 (208)
+--||+|+|+.++|||||..+|+.. .. ..+..+.+++......+.+.+ +.+.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 4468999999999999999998721 11 112233344444445555532 358899999
Q ss_pred cCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 028507 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127 (208)
Q Consensus 65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~ 127 (208)
||||.+|..-....++-+|++|+|+|+.+.=......-|.+... .++|+++++||+|..
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH----HTCCEEEEEECSSST
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH----cCCCeEEEEcccccc
Confidence 99999999999999999999999999984322222223333222 249999999999974
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.57 E-value=8.8e-16 Score=129.18 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=77.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc--CcCC------C----------CCCCccceeeEEEEEEECCEEEEEEEEEcCCchhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY--DKFD------N----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~--~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 71 (208)
.||+|+|+.++|||||..+|+. +... . +....+++......+.+++ +.++|+|||||.+|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence 5799999999999999999872 2111 0 0111233333334444554 67999999999999
Q ss_pred hhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
.......++.+|++|+|+|+.+.=......-|.. ...+ ++|.++++||+|...
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHc---CCCeEEEEecccccc
Confidence 9999999999999999999984311122222222 2222 488899999999753
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.55 E-value=6.2e-16 Score=121.37 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=62.0
Q ss_pred EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC--HH
Q 028507 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IE 135 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~--~~ 135 (208)
+.+.|+||+|.... .......+|++++|+|++.++....+.. .+ ...|.++|+||+|+.+..... ..
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~~~~~ 235 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPARRIQA 235 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHHHHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHHHHHH
Confidence 46899999995421 2334678999999999986533221111 11 136778899999986422110 01
Q ss_pred HHHHHHH-------hcCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 136 EGEAKSR-------ELNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 136 ~~~~~~~-------~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
+...... .++.+++.+|++++.|+++++++|.+.+.
T Consensus 236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1111111 12457899999999999999999988764
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.54 E-value=3.6e-14 Score=107.00 Aligned_cols=109 Identities=17% Similarity=0.056 Sum_probs=68.0
Q ss_pred EEEEEEEcCCchhhhhchh------hhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCc
Q 028507 58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~ 128 (208)
+.+.||||||......... ..+.. +++|+++|+.. +..+.....+.... ....++|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI--DLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH--HHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH--hcccCCCeEEEEecccccc
Confidence 4699999999876543221 23455 88888998753 22222221111111 1113489999999999865
Q ss_pred ccCCCHHHHHH----------------------------HHHhcC--CeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 129 KRQVSIEEGEA----------------------------KSRELN--VMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 129 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
..+. .+... .+..++ .+++++||+++.|+++++++|.+.+.
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 4321 11111 123333 48999999999999999999988764
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.51 E-value=3.4e-14 Score=120.38 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=97.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCcccee----------------------------------------
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGID---------------------------------------- 45 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~---------------------------------------- 45 (208)
....+|+|+|.+++|||||+|+|++..+ +.....++...
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4567999999999999999999998776 22222111100
Q ss_pred ----------eEEEEEEECCEEEEEEEEEcCCchh-------------hhhchhhhc-cCCcEEEEEEeCCChhhHHHHH
Q 028507 46 ----------FLSKTMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYI-RDSSVAVVVYDVASRQSFLNTS 101 (208)
Q Consensus 46 ----------~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 101 (208)
.....+...+ ...+.|+||||... +..+...++ ..+|++++|+|++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0011111111 12488999999543 222333344 5789999999998643222222
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHH--hcCC-eEEEeecCCCCChHHHHHHHHHH
Q 028507 102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR--ELNV-MFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 102 ~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~--~~~~-~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
.++..+. ..+.|+++|+||+|+.+.............. ..++ +++.+||++|.|++++++.+...
T Consensus 208 ~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHC---TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHH---hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2333332 3458999999999998655443221110000 1232 67889999999999999998863
No 206
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.51 E-value=1.4e-14 Score=113.40 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=65.3
Q ss_pred EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCH--H
Q 028507 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--E 135 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~--~ 135 (208)
+.+.||||||....... ....+|++++|+|++..+.+..+.. .. .+.|.++|+||+|+........ .
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 57999999997654332 4589999999999975533221111 11 1267789999999865322111 1
Q ss_pred HHHHHHHhc-------CCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 136 EGEAKSREL-------NVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 136 ~~~~~~~~~-------~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
+........ ..+++++||++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 222211121 357899999999999999999988764
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.46 E-value=2e-13 Score=105.11 Aligned_cols=99 Identities=20% Similarity=0.174 Sum_probs=80.6
Q ss_pred chhhhhchhhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC-HHHHHHHHHhcC
Q 028507 68 QERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELN 145 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 145 (208)
++++..+.+.++.++|++++|+|+++|. ++..+..|+..+.. .++|+++|+||+|+.+...+. .++...++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5677888888999999999999999986 88888999887654 459999999999997654222 344555666778
Q ss_pred CeEEEeecCCCCChHHHHHHHHHH
Q 028507 146 VMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 146 ~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
++++++||+++.|++++++.+...
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTTTC
T ss_pred CeEEEEECCCCCCHHHHHhhccCc
Confidence 999999999999999999877653
No 208
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.39 E-value=3.2e-13 Score=106.71 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=52.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCE---------------EEEEEEEEcCCchhhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR 72 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~~~ 72 (208)
..++|+|+|.+|+|||||+|+|++..+.....++++++.....+.+.+. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4589999999999999999999988765555566655555555555432 1259999999987644
Q ss_pred h-------chhhhccCCcEEEEEEeCCChh
Q 028507 73 S-------LIPSYIRDSSVAVVVYDVASRQ 95 (208)
Q Consensus 73 ~-------~~~~~~~~~d~~i~v~d~~~~~ 95 (208)
. .+..+++.+|++++|+|+++.+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 3456688999999999998543
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.38 E-value=7.7e-13 Score=103.27 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=62.4
Q ss_pred EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHH
Q 028507 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG 137 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~ 137 (208)
+.+.|+||+|..... ......+|.+++|+|....+....+... +. ..+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 569999999965322 1234689999999998644322111111 11 134467779999754222211122
Q ss_pred HHHHHh----------cCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 138 EAKSRE----------LNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 138 ~~~~~~----------~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
+.+... ++.+++.+|++++.|++++++.|.+.+.
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222211 1357899999999999999999988764
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.37 E-value=2.3e-11 Score=96.38 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=63.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCE---------------EEEEEEEEcCCchh-
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER- 70 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~- 70 (208)
...+++|+|++|+|||||+|+|++... .....|+++++.....+.+.+. ...+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 357999999999999999999998776 5555666666655555555541 13589999999543
Q ss_pred ------hhhchhhhccCCcEEEEEEeCCC
Q 028507 71 ------FRSLIPSYIRDSSVAVVVYDVAS 93 (208)
Q Consensus 71 ------~~~~~~~~~~~~d~~i~v~d~~~ 93 (208)
+...+...++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234445789999999999863
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.28 E-value=6.1e-12 Score=90.29 Aligned_cols=104 Identities=7% Similarity=-0.063 Sum_probs=70.1
Q ss_pred CCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHH---hc--CCCCcEEEEEeCC-CCCcccCCCHHHHHH
Q 028507 66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT---ER--GSDVIIVLVGNKT-DLVEKRQVSIEEGEA 139 (208)
Q Consensus 66 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~---~~--~~~~piivv~nK~-D~~~~~~~~~~~~~~ 139 (208)
+|+..++.+|+.|+.++|++|||+|++|.+.++ ....+..+.. .. ..++|++|++||. |+. ...+..++..
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHH
Confidence 378889999999999999999999999875543 3333322221 11 2568999999985 664 3345555544
Q ss_pred HHHh----cCCeEEEeecCCCCChHHHHHHHHHHcCC
Q 028507 140 KSRE----LNVMFIETSAKAGFNIKPLFRKIAAALPG 172 (208)
Q Consensus 140 ~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~ 172 (208)
.... ..+.+..|||.+|+|+.+.++||.+.+..
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 4332 34689999999999999999999887753
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.16 E-value=1.3e-10 Score=87.34 Aligned_cols=106 Identities=7% Similarity=-0.078 Sum_probs=74.6
Q ss_pred cCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHH---HHH-Hh-cCCCCcEEEEEeC-CCCCcccCCCHHHHH
Q 028507 65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWID---EVR-TE-RGSDVIIVLVGNK-TDLVEKRQVSIEEGE 138 (208)
Q Consensus 65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~i~-~~-~~~~~piivv~nK-~D~~~~~~~~~~~~~ 138 (208)
.+|+..++.+|+.|+.++|++|||+|++|.+.++ ....+. .+. .. ...++|++|++|| .|+.. ..+..++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 3577889999999999999999999999887544 222222 222 22 1256999999996 57743 34455554
Q ss_pred HHHHh----cCCeEEEeecCCCCChHHHHHHHHHHcCCC
Q 028507 139 AKSRE----LNVMFIETSAKAGFNIKPLFRKIAAALPGM 173 (208)
Q Consensus 139 ~~~~~----~~~~~~~~sa~~~~~i~~~~~~l~~~~~~~ 173 (208)
..... ..+.+..|||.+|+|+.+.++||.+.+...
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 44322 345899999999999999999999988543
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.03 E-value=2.1e-11 Score=96.35 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=83.4
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC------cCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhch-------
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI------- 75 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~------- 75 (208)
..+++++|.+|+|||||+|+|++. .......+.++. ......+.. .+.++||||......+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTL--DMIEIPLES---GATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSC--EEEEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEE--eeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence 468999999999999999999975 222223333332 233333433 27999999954322111
Q ss_pred hhhc---cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEee
Q 028507 76 PSYI---RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS 152 (208)
Q Consensus 76 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 152 (208)
...+ ...+.++++++....-.+..+.. +......+.|+++++||.|........ .....+.+..+..+...+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSC
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCC
Confidence 1112 67899999999842110111111 222233568999999999987655443 333455566676666666
Q ss_pred cCCCCCh
Q 028507 153 AKAGFNI 159 (208)
Q Consensus 153 a~~~~~i 159 (208)
+.+.+++
T Consensus 312 ~~~~~~~ 318 (369)
T 3ec1_A 312 KRYAAEF 318 (369)
T ss_dssp GGGTTTC
T ss_pred chhhhhc
Confidence 5554443
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.02 E-value=1e-09 Score=87.58 Aligned_cols=139 Identities=14% Similarity=0.210 Sum_probs=71.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCC----CCccceeeEEEEEEECCEEEEEEEEEcCCchhh--------------
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------------- 71 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------------- 71 (208)
++++|+|++|+|||||++.|.+..+.... .+..............+....++++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 56999999999999999999987543211 111111111111222222236899999985321
Q ss_pred ----hhchhhh---------ccC--CcE-EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC--
Q 028507 72 ----RSLIPSY---------IRD--SSV-AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-- 133 (208)
Q Consensus 72 ----~~~~~~~---------~~~--~d~-~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~-- 133 (208)
......+ +.. +|+ ++|+.|...+-+..+ + .+.......+|+|+|.||+|.....+..
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----i-eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----L-VTMKKLDSKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----H-HHHHHTCSCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----H-HHHHHHhhCCCEEEEEcchhccchHHHHHH
Confidence 0011111 112 233 555666653322222 1 2222223569999999999987544321
Q ss_pred HHHHHHHHHhcCCeEEEeec
Q 028507 134 IEEGEAKSRELNVMFIETSA 153 (208)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~sa 153 (208)
...+.......|+.++.+|.
T Consensus 198 ~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHcCCcEEecCC
Confidence 12223223445777777774
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.00 E-value=1.1e-09 Score=86.43 Aligned_cols=97 Identities=22% Similarity=0.321 Sum_probs=74.0
Q ss_pred CchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH----HH
Q 028507 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK----SR 142 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~ 142 (208)
..++|..+...+.+..+++++|+|++++. ..|...+....+ ++|+++|+||+|+.+.. ...++...+ +.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 35788888888889999999999999863 345555555543 68999999999997543 233333333 55
Q ss_pred hcCC---eEEEeecCCCCChHHHHHHHHHHc
Q 028507 143 ELNV---MFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 143 ~~~~---~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
..++ .++.+||++|.|++++++.|.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6677 799999999999999999997754
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.97 E-value=5.6e-10 Score=91.12 Aligned_cols=151 Identities=19% Similarity=0.177 Sum_probs=83.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhh------cCcC---CC-CCCCcc-----------ceeeEEEEEE-------------E
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFM------YDKF---DN-TYQATI-----------GIDFLSKTMY-------------L 53 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~------~~~~---~~-~~~~~~-----------~~~~~~~~~~-------------~ 53 (208)
+...|+|+|.+|+||||+++.|. +.+. .. .+.+.. ++++...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999988 3322 00 011100 1111110000 0
Q ss_pred CCEEEEEEEEEcCCchhhhh-chhh---h--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCC
Q 028507 54 EDRTVRLQLWDTAGQERFRS-LIPS---Y--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDL 126 (208)
Q Consensus 54 ~~~~~~~~i~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ivv~nK~D~ 126 (208)
....+.+.|+||||...... +... . +..+|.+++|+|++...... .....+... +|+ .+|+||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCCcc
Confidence 00225699999999653211 1111 1 23789999999998643211 122223221 554 788899997
Q ss_pred CcccCCCHHHHHHHHHhcCCeE------------------EEeecCCCCC-hHHHHHHHHHH
Q 028507 127 VEKRQVSIEEGEAKSRELNVMF------------------IETSAKAGFN-IKPLFRKIAAA 169 (208)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~sa~~~~~-i~~~~~~l~~~ 169 (208)
...... +.......+.++ +.+|+..|.+ +.++++++.+.
T Consensus 253 ~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 533221 122233344433 3467888988 99999998876
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.96 E-value=3.4e-11 Score=95.08 Aligned_cols=135 Identities=12% Similarity=0.131 Sum_probs=76.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCC-------CCCCCccceeeEEEEEEECCEEEEEEEEEcCCchhhhhch----h-
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFD-------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI----P- 76 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----~- 76 (208)
..+++++|.+|+|||||+|+|++.... ....+.+ +.......+... +.++||||......+. .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gt--T~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGT--TLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCe--ecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHH
Confidence 468999999999999999999976321 1222222 222333334332 8999999964332111 1
Q ss_pred ---hh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHhcCCeEEEe
Q 028507 77 ---SY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET 151 (208)
Q Consensus 77 ---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
.+ ....+..+++++....-.+..+.. +........|+++++||.|....... ......+.+..|..+...
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~ 309 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPP 309 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSS
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCC
Confidence 11 356788888888742110111110 11222356899999999998765543 333344555666554444
Q ss_pred ec
Q 028507 152 SA 153 (208)
Q Consensus 152 sa 153 (208)
++
T Consensus 310 ~~ 311 (368)
T 3h2y_A 310 TP 311 (368)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.95 E-value=8.5e-10 Score=83.43 Aligned_cols=138 Identities=13% Similarity=0.174 Sum_probs=71.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCC--------C-CccceeeEEEEEEECCEEEEEEEEEcCCchhhh-------
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY--------Q-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------- 72 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------- 72 (208)
+++++|+|++|+|||||++.|.+...+... . .+.............+-...++++|++|.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999865432211 0 010000000000111111268999999842100
Q ss_pred ---hch------------------hhhccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCccc
Q 028507 73 ---SLI------------------PSYIRDSSVAVVVYDVAS-RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130 (208)
Q Consensus 73 ---~~~------------------~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~ 130 (208)
... +-.+..+++.++++|... +-.... ...+..+. .. +++++|++|.|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCHH
Confidence 000 011335688888898652 211111 22233332 23 8999999999987543
Q ss_pred CCC--HHHHHHHHHhcCCeEEEe
Q 028507 131 QVS--IEEGEAKSRELNVMFIET 151 (208)
Q Consensus 131 ~~~--~~~~~~~~~~~~~~~~~~ 151 (208)
+.. ...+......+++.+++.
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~~ 179 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYPQ 179 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHHHHcCccccCC
Confidence 321 233344455667766643
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.85 E-value=2.7e-09 Score=84.24 Aligned_cols=97 Identities=22% Similarity=0.261 Sum_probs=72.4
Q ss_pred CchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHH----HH
Q 028507 67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK----SR 142 (208)
Q Consensus 67 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~----~~ 142 (208)
.++.|..+...+...++++++|+|++++.+ .|...+....+ +.|+++|+||+|+.+.. ....+...+ +.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467888888888899999999999998763 34444444443 68999999999997543 223333333 45
Q ss_pred hcCC---eEEEeecCCCCChHHHHHHHHHHc
Q 028507 143 ELNV---MFIETSAKAGFNIKPLFRKIAAAL 170 (208)
Q Consensus 143 ~~~~---~~~~~sa~~~~~i~~~~~~l~~~~ 170 (208)
..|+ .++.+||++|.|++++++.+.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 5676 789999999999999999997765
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.79 E-value=1.1e-08 Score=77.74 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=68.8
Q ss_pred EEEcCCch-hhhhchhhhccCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHH
Q 028507 62 LWDTAGQE-RFRSLIPSYIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE 138 (208)
Q Consensus 62 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~ 138 (208)
|-..|||. .........+..+|+++.|+|+.+|.+... +..++ .++|+++|+||+|+.+... .+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence 44578876 344556667899999999999998876542 33222 3599999999999976321 12223
Q ss_pred HHHHhcCCeEEEeecCCCCChHHHHHHHHHHcC
Q 028507 139 AKSRELNVMFIETSAKAGFNIKPLFRKIAAALP 171 (208)
Q Consensus 139 ~~~~~~~~~~~~~sa~~~~~i~~~~~~l~~~~~ 171 (208)
.+....+++++.+||.++.|++++++.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 334455789999999999999999998877764
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.78 E-value=1.6e-07 Score=74.85 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=85.9
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCcc-c--eeeEEEEEEECCEEEEEEEEEcCCchhhhhchh-----hhcc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-G--IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-----SYIR 80 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-----~~~~ 80 (208)
...++|+|++|+|||||+|.|.+...+....... + .+......... ..-.+.+||++|......... ..+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3589999999999999999999754322111111 0 00001111111 111479999998542111111 1233
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC--c-----ccCCCHHHH----HHHH----HhcC
Q 028507 81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV--E-----KRQVSIEEG----EAKS----RELN 145 (208)
Q Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~--~-----~~~~~~~~~----~~~~----~~~~ 145 (208)
..+..++ ++...... .. ......+.. .+.|+++|.||.|+. + -......+. ..+. .+.+
T Consensus 148 ~~~~~~~-lS~G~~~k-qr-v~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFKK-ND-IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCCH-HH-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCccH-HH-HHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555 77652111 11 111222222 348999999999874 1 011122222 2222 1222
Q ss_pred ---CeEEEeec--CCCCChHHHHHHHHHHcCCCccc
Q 028507 146 ---VMFIETSA--KAGFNIKPLFRKIAAALPGMETL 176 (208)
Q Consensus 146 ---~~~~~~sa--~~~~~i~~~~~~l~~~~~~~~~~ 176 (208)
..++.+|+ .++.+++++.+.+...+++.+..
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~ 257 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH 257 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhh
Confidence 36788999 56667999999999998766543
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.53 E-value=8.2e-08 Score=73.00 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=35.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCcC-CCCCCCccceeeEEEEEEECCEEEEEEEEEcCCch
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 69 (208)
..++++++|.+|+|||||+|+|.+... .....+.++.... .+.... .+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence 468999999999999999999998763 2333333332221 222322 48999999964
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.45 E-value=6.2e-08 Score=72.90 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=35.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 70 (208)
++++++|.+|+|||||+|+|.+...... .++.+.+.....+.... .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 5999999999999999999997765321 12222222222222222 489999999654
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.45 E-value=2.2e-07 Score=74.70 Aligned_cols=83 Identities=17% Similarity=0.111 Sum_probs=47.5
Q ss_pred EEEEEEEcCCchhhhh-ch---h--hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCcc
Q 028507 58 VRLQLWDTAGQERFRS-LI---P--SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV-I-IVLVGNKTDLVEK 129 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~-~~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-iivv~nK~D~~~~ 129 (208)
+.+.|+||||...... +. . ..+..+|.+++|+|++... ........+. ..+ | ..+|+||+|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~----~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAFK----EAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence 5689999999543211 11 1 1123689999999987442 1222222222 235 5 7888999997431
Q ss_pred cCCCHHHHHHHHHhcCCeEEEe
Q 028507 130 RQVSIEEGEAKSRELNVMFIET 151 (208)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
. ..+.......+.++.++
T Consensus 254 ~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 G----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp T----HHHHHHHHHSSCCEEEE
T ss_pred h----HHHHHHHHHHCCCEEEe
Confidence 1 22334556667766655
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.38 E-value=1.1e-06 Score=70.48 Aligned_cols=91 Identities=18% Similarity=0.088 Sum_probs=53.2
Q ss_pred EEEEEEEcCCchhhhh-c---hh--hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 58 VRLQLWDTAGQERFRS-L---IP--SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~-~---~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
+.+.|+||+|...... . .. ......|.+++|+|++..... ......+.... .+..+|+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~~---~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEAT---PIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHSC---TTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhhC---CCeEEEEECCCCccc--
Confidence 5689999999432111 0 11 113467999999999753322 22223333322 345678899997432
Q ss_pred CCHHHHHHHHHhcCCeEEEeecCCCCChH
Q 028507 132 VSIEEGEAKSRELNVMFIETSAKAGFNIK 160 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 160 (208)
...+.......+.++.+++. |++++
T Consensus 255 --gG~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred --ccHHHHHHHHHCCCEEEEEc--CCChH
Confidence 23345555677888887774 65443
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.28 E-value=4.9e-07 Score=75.12 Aligned_cols=64 Identities=14% Similarity=0.018 Sum_probs=39.0
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCC-ccceeeEEEEE--EE-CCEEEEEEEEEcCCchh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTM--YL-EDRTVRLQLWDTAGQER 70 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~--~~-~~~~~~~~i~D~~G~~~ 70 (208)
.+..+|+|+|.+|+|||||+|+|++......... +.+.+...... .. ......+.++||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3457899999999999999999998764211111 11111111111 11 11224699999999654
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.28 E-value=3.9e-07 Score=68.53 Aligned_cols=94 Identities=14% Similarity=0.056 Sum_probs=62.0
Q ss_pred cCCchhh-hhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHHHHHHHHh
Q 028507 65 TAGQERF-RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE 143 (208)
Q Consensus 65 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~ 143 (208)
.|||... .......+.++|++++|+|+.+|.+..... +. + . ++|.++|+||+|+.+... .+....+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~~--~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEKT--TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHHH--HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHHH--HHHHHHHHHH
Confidence 3665532 234556689999999999999886654311 11 1 1 589999999999976422 1222334445
Q ss_pred cCCeEEEeecCCCCChHHHHHHHHHH
Q 028507 144 LNVMFIETSAKAGFNIKPLFRKIAAA 169 (208)
Q Consensus 144 ~~~~~~~~sa~~~~~i~~~~~~l~~~ 169 (208)
.++++ .+|++++.|++++++.+...
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 57888 99999999999998887654
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.20 E-value=6e-07 Score=71.96 Aligned_cols=90 Identities=13% Similarity=0.052 Sum_probs=53.5
Q ss_pred EEEEEEEcCCchh--hh----hchhh--hccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcc
Q 028507 58 VRLQLWDTAGQER--FR----SLIPS--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129 (208)
Q Consensus 58 ~~~~i~D~~G~~~--~~----~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~ 129 (208)
+.+.|+||||... .. ..... .....+.+++|+|+...... ......+.... .+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~~---~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQAS---PIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHHC---SSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhccc---CCcEEEEecccccc-
Confidence 5688999999533 11 11111 12256899999999753222 22233343332 44678889999642
Q ss_pred cCCCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 028507 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (208)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 159 (208)
....+.......+.|+.+++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 234455566677999888875 6554
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.20 E-value=4.6e-07 Score=69.49 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=60.0
Q ss_pred hhhchhhhccCCcEEEEEEeCCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC--CHHHHHHHHHhcCCe
Q 028507 71 FRSLIPSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELNVM 147 (208)
Q Consensus 71 ~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~ 147 (208)
...+.+..+.++|.+++|+|+.+|..- ..+.+++.... ..++|.++|+||+|+.++... ............|++
T Consensus 76 ~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 76 TNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp SCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence 344555678999999999999977543 33444333222 235888999999999765320 012233333455889
Q ss_pred EEEeecCCCCChHHHHH
Q 028507 148 FIETSAKAGFNIKPLFR 164 (208)
Q Consensus 148 ~~~~sa~~~~~i~~~~~ 164 (208)
++.+|+.++.|+++++.
T Consensus 153 v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEECCHHHHTTCTTTGG
T ss_pred EEEEecCCCCCHHHHHh
Confidence 99999998887766554
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.06 E-value=7.5e-06 Score=68.69 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
..++|+|++|+|||||++.+.+...
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-
T ss_pred CeEEEECCCCChHHHHHHHHhCCCC
Confidence 4599999999999999999987643
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.05 E-value=8.8e-06 Score=62.21 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=55.7
Q ss_pred EEEEEEEcCCchh--hhh-chh-----hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCc
Q 028507 58 VRLQLWDTAGQER--FRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128 (208)
Q Consensus 58 ~~~~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~ 128 (208)
+.+.|+||||... ... +.. .....+|.+++|+|+... .........+.. ..+ ..+|.||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5699999999655 211 211 124578999999998642 122222233332 245 677889999642
Q ss_pred ccCCCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 028507 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 161 (208)
....+.......+.++.+++ .|+++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 23345566777888888776 5666654
No 232
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.90 E-value=7.3e-07 Score=72.59 Aligned_cols=110 Identities=12% Similarity=0.055 Sum_probs=60.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcCcCCCCCCCccceeeEEEEEEECCEEEEEEEEEcCCchh--hhhch--------h
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLI--------P 76 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~--------~ 76 (208)
...++|+++|.+|+||||+.++|...... ...++.............+......+||..|.+. ....+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999998754220 0011111000000000001112346788888632 22222 4
Q ss_pred hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q 028507 77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVG 121 (208)
Q Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~ 121 (208)
.++...++.++|+|.++. .......|+..+.... .+++++-
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~---~~vv~l~ 156 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG---YKTFFVE 156 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT---CEEEEEE
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC---CcEEEEE
Confidence 455567888999999986 5556666666665442 4455543
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.88 E-value=4.9e-05 Score=59.42 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=55.2
Q ss_pred hccCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCC-HHHHHHHHHhcCCeEEEeecCC
Q 028507 78 YIRDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELNVMFIETSAKA 155 (208)
Q Consensus 78 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~sa~~ 155 (208)
.+.++|.+++|.+. +|.. ...+.+++...... ++|.++|+||+|+.++.... ..+........|++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 36799999988765 4543 33344444333222 37889999999997643210 1112223345688999999999
Q ss_pred CCChHHHHHHH
Q 028507 156 GFNIKPLFRKI 166 (208)
Q Consensus 156 ~~~i~~~~~~l 166 (208)
+.+++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99998887654
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.77 E-value=4.4e-05 Score=61.46 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=21.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
+-.-|.|+|++++|||||+|.|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3455788999999999999999864
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.58 E-value=4.1e-05 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
++++|+|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988754
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=6.7e-05 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
--++|+|++|+|||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998864
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.42 E-value=7.8e-05 Score=53.44 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
-.++|+|++|+|||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.33 E-value=5.6e-05 Score=57.94 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.-.++|+|++|+|||||+|.|.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3478999999999999999998654
No 239
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.33 E-value=0.0011 Score=53.22 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=44.6
Q ss_pred EEEEEEEcCCchhhhh-chh-----hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCccc
Q 028507 58 VRLQLWDTAGQERFRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR 130 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~D~~~~~ 130 (208)
+.+.|+||||...... +.. ..+...+.+++|+|+..... .......+... ++ .-+|+||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~----l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA----LPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH----SCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc----CCCeEEEEecCCCCccH
Confidence 5699999999543321 111 12347889999999874322 22222333322 33 34577999974322
Q ss_pred CCCHHHHHHHHHhcCCeEEEe
Q 028507 131 QVSIEEGEAKSRELNVMFIET 151 (208)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~ 151 (208)
..+.......+.++..+
T Consensus 257 ----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 257 ----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp ----THHHHHHHHHCCCEEEE
T ss_pred ----HHHHHHHHHHCCCeEEE
Confidence 12334445556554443
No 240
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.29 E-value=0.00013 Score=51.67 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
++|+|++|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999998853
No 241
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.28 E-value=0.00019 Score=51.32 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=21.9
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
++.--|+|+|++|+|||||++.|...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 44557899999999999999999854
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.27 E-value=0.00014 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
--++|+|++|+|||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 45899999999999999998764
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.27 E-value=0.00015 Score=52.93 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.--++|+|++|+|||||++.|.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4467899999999999999988643
No 244
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.26 E-value=0.00016 Score=51.25 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
|+|+||+|+|||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.24 E-value=0.00016 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999987643
No 246
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.24 E-value=0.00025 Score=49.44 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+...|+|+|++|+||||+.+.|..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998764
No 247
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.24 E-value=0.00016 Score=52.65 Aligned_cols=24 Identities=33% Similarity=0.647 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-.++|+|++|+|||||++.|.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999988643
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.24 E-value=0.00016 Score=50.49 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=17.5
Q ss_pred eEEEEcCCCCCHHHHHHHhh
Q 028507 11 KLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~ 30 (208)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999644
No 249
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.19 E-value=0.00027 Score=50.00 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.-.|+|+|++|+|||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999999865
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.18 E-value=0.00022 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
--|+|+|++|+|||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999999998653
No 251
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.18 E-value=0.00027 Score=49.59 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~ 30 (208)
++...|+|+|++|+||||+.+.|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 345679999999999999999886
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.16 E-value=0.00026 Score=51.05 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=21.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
+...|+|+|++|+|||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988753
No 253
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.13 E-value=0.00029 Score=49.73 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
...|+|.|++|+||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.12 E-value=0.00028 Score=48.88 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCCHHHHHHHh
Q 028507 10 YKLVFLGDQSVGKTSIITRF 29 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l 29 (208)
+.|+|+|++|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 56899999999999999998
No 255
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.12 E-value=0.00025 Score=52.23 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999888654
No 256
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.09 E-value=0.0004 Score=49.03 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=22.5
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.++...|+|+|++|+||||+.+.|...
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345578999999999999999988654
No 257
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.09 E-value=0.00035 Score=50.02 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
+...|+|+|++|+||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34578999999999999999987654
No 258
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.09 E-value=0.00029 Score=50.54 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
+..-|+|+|++|+|||||.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999998753
No 259
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.07 E-value=0.00032 Score=50.66 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~ 30 (208)
++|+|+|++|+||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 260
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.07 E-value=0.00032 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999988654
No 261
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.05 E-value=0.00032 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
-.++|+|++|+|||||+|.|.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3689999999999999999997553
No 262
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.05 E-value=0.00035 Score=50.54 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~ 30 (208)
++|+|+|++|+||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.05 E-value=0.00042 Score=48.37 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|+|++|+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.05 E-value=0.00034 Score=48.60 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
..|+|+|++|+||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988753
No 265
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.04 E-value=0.00047 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
|+...|+|.|++|+||||+.+.|..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 266
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.04 E-value=0.00031 Score=51.35 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988654
No 267
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.03 E-value=0.00039 Score=50.02 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+...|+|+|++|+|||||++.|.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998875
No 268
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.01 E-value=0.00037 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
-++|+|++|+|||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999974
No 269
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.01 E-value=0.00039 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988654
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.01 E-value=0.00041 Score=48.04 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
.|+|.|++|+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 271
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.00 E-value=0.00042 Score=50.60 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~ 30 (208)
+.|+|+|++|+||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999886
No 272
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.99 E-value=0.00051 Score=48.56 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+...|+|.|++|+||||+.+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999988753
No 273
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.98 E-value=0.00041 Score=51.99 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|+.|+|||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988654
No 274
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.98 E-value=0.00041 Score=51.18 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988653
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.98 E-value=0.00043 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988654
No 276
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.97 E-value=0.00042 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999988654
No 277
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.97 E-value=0.00042 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.++|+|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988753
No 278
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.96 E-value=0.00049 Score=50.90 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~ 30 (208)
..|+|+|++|+|||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.95 E-value=0.00058 Score=47.64 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|+|++|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 280
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.95 E-value=0.0006 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~ 30 (208)
+...|+|+|++|+||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999886
No 281
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.95 E-value=0.00044 Score=51.90 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999988654
No 282
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.94 E-value=0.00053 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
+.|+|.|++|+||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999998864
No 283
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.94 E-value=0.00047 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.=.++|+|++|+|||||++.|.+-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 346899999999999999988754
No 284
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.94 E-value=0.00055 Score=48.93 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
...|+|+|++|+|||||++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 285
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.94 E-value=0.00052 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999988654
No 286
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.94 E-value=0.00061 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+...|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
No 287
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.94 E-value=0.00046 Score=51.53 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988654
No 288
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.93 E-value=0.0005 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.-++|+|++|+|||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999864
No 289
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.93 E-value=0.00052 Score=50.93 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988654
No 290
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.93 E-value=0.0005 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988654
No 291
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.92 E-value=0.00049 Score=51.56 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 57899999999999999988654
No 292
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.92 E-value=0.00057 Score=49.29 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
|.|+|+|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999888763
No 293
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.91 E-value=0.00051 Score=50.76 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988654
No 294
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.91 E-value=0.00049 Score=51.51 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
=.++|+|+.|+|||||++.+.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999988753
No 295
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.90 E-value=0.00061 Score=52.07 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
-.++++|++|+|||||+|.|.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4578999999999999999986543
No 296
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.89 E-value=0.00054 Score=50.90 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988654
No 297
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.89 E-value=0.00055 Score=51.11 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988654
No 298
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.88 E-value=0.00056 Score=48.93 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
++|+|+|++|+||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999998875
No 299
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.88 E-value=0.00056 Score=50.86 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 300
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.88 E-value=0.00062 Score=49.50 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|+|++|+||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998764
No 301
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.88 E-value=0.00061 Score=50.98 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999988653
No 302
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.87 E-value=0.00082 Score=47.97 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
...+.|+|+|++|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.86 E-value=0.00057 Score=51.44 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988654
No 304
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.86 E-value=0.00044 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.++|+|+.|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998865
No 305
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.86 E-value=0.00062 Score=51.15 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 306
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.85 E-value=0.00061 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
++|+|.|++|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 307
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.85 E-value=0.0007 Score=48.68 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+...|+|.|++|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998874
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.85 E-value=0.0007 Score=47.75 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|.|++|+||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 309
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.84 E-value=0.00067 Score=51.27 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988654
No 310
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.84 E-value=0.00052 Score=48.13 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 311
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.84 E-value=0.00072 Score=48.26 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|+|++|+||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999998863
No 312
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.83 E-value=0.00062 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.603 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.-.++++|++|+|||||+|.|. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3468999999999999999998 43
No 313
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.83 E-value=0.00076 Score=47.62 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
...|+|+|++|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999998864
No 314
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.83 E-value=0.00067 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|+|++|+||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 315
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.83 E-value=0.00066 Score=48.53 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
...|+|+|++|+|||||.+.|...
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988643
No 316
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.82 E-value=0.00065 Score=50.60 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999988654
No 317
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.82 E-value=0.00082 Score=48.16 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
+.|+|+|++|+||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 318
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.81 E-value=0.0004 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=15.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhh-cC
Q 028507 10 YKLVFLGDQSVGKTSIITRFM-YD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~-~~ 32 (208)
--++|+|++|+|||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358899999999999999998 54
No 319
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.80 E-value=0.00068 Score=50.88 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988653
No 320
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.79 E-value=0.00091 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.+.|+|.|++|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999988754
No 321
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.79 E-value=0.00084 Score=46.35 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
++|+|.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 322
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.79 E-value=0.0027 Score=42.73 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 356999999999999999877643
No 323
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.78 E-value=0.0007 Score=52.02 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.+..-|+|+|++|+|||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44577999999999999999988754
No 324
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.77 E-value=0.00098 Score=49.27 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+.++|+|.|++|+||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 325
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.77 E-value=0.00078 Score=49.61 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHhh
Q 028507 11 KLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~ 30 (208)
-++|+|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57899999999999999887
No 326
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.76 E-value=0.00087 Score=50.22 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988764
No 327
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.76 E-value=0.0014 Score=46.69 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~ 30 (208)
-..|+|.|++|+||||+.+.|.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999998886
No 328
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.75 E-value=0.00099 Score=48.30 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
.+.|+|+|++|+||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999988763
No 329
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.74 E-value=0.00073 Score=49.09 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998643
No 330
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.74 E-value=0.0013 Score=46.24 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
++...|+|+|.+|+||||+.+.|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 331
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.73 E-value=0.00038 Score=48.69 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.++|+|++|+|||||++.|.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999988754
No 332
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.71 E-value=0.0012 Score=50.04 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.2
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
.+..-|+|.|++|+||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999864
No 333
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.71 E-value=0.0011 Score=47.10 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=22.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.+.+.|+|+|++|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44578999999999999999988754
No 334
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.71 E-value=0.001 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+++|++|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 335
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.70 E-value=0.001 Score=48.42 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
+.|+|.|++|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998863
No 336
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.69 E-value=0.0006 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=.++|+|++|+|||||++.+.+-.
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 368999999999999999887543
No 337
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.67 E-value=0.00079 Score=52.87 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.-+++|+|++|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999888653
No 338
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.67 E-value=0.00088 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999988754
No 339
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.67 E-value=0.0032 Score=50.66 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=37.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc------------------CcCCC---CCCCccceeeEEEEEEE---CCEEEEEEEE
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY------------------DKFDN---TYQATIGIDFLSKTMYL---EDRTVRLQLW 63 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~------------------~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~i~ 63 (208)
+-.-|.|+|+.++|||+|+|.|+. ..|.. ...-|.|+-.....+.. ++..+.+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 335566899999999999996641 12211 11223333322222211 4567889999
Q ss_pred EcCCchh
Q 028507 64 DTAGQER 70 (208)
Q Consensus 64 D~~G~~~ 70 (208)
||.|...
T Consensus 146 DTEG~~d 152 (457)
T 4ido_A 146 DTQGTFD 152 (457)
T ss_dssp EECCBTC
T ss_pred eccCCCC
Confidence 9999553
No 340
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.66 E-value=0.0015 Score=45.97 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|.|++|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988863
No 341
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.65 E-value=0.0013 Score=48.50 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=20.9
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+...|+|+|+.|+|||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998875
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.65 E-value=0.0012 Score=46.63 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~ 30 (208)
...|+|+|++|+||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999886
No 343
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.65 E-value=0.0013 Score=47.07 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
+...|+|+|++|+|||||.+.|...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999988754
No 344
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.65 E-value=0.0033 Score=44.95 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
.++|.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998864
No 345
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.63 E-value=0.0011 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988654
No 346
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.62 E-value=0.0051 Score=41.45 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
...|++.|++|+|||++.+.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999988754
No 347
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.62 E-value=0.0012 Score=46.52 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
+.|+|.|.+|+||||+.+.|..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 348
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.62 E-value=0.0016 Score=48.44 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=20.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~ 30 (208)
...|+|+|++|+||||+.+.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999887
No 349
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.62 E-value=0.00075 Score=47.28 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=16.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+...|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998863
No 350
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.62 E-value=0.0011 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999988653
No 351
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.62 E-value=0.0013 Score=45.82 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..+.|+|++|+|||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998875
No 352
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.61 E-value=0.0011 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999988653
No 353
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.61 E-value=0.0012 Score=51.80 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999888654
No 354
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.61 E-value=0.0013 Score=46.49 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
-|+|.|++|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998874
No 355
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.0012 Score=51.78 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999988654
No 356
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.60 E-value=0.0012 Score=45.99 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
+|+|+|++|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999988863
No 357
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.60 E-value=0.0012 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999988654
No 358
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.58 E-value=0.00082 Score=45.80 Aligned_cols=24 Identities=13% Similarity=0.379 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-.++++|++|+|||+|++.+.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999887643
No 359
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.58 E-value=0.0011 Score=51.78 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.++|+|+.|+|||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999988753
No 360
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.57 E-value=0.0012 Score=50.52 Aligned_cols=89 Identities=18% Similarity=0.105 Sum_probs=47.8
Q ss_pred EEEEEEcCCchhhhh------------chhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 028507 59 RLQLWDTAGQERFRS------------LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~ 126 (208)
.+.++|++|...... +.+......+.++++.|...... +...+..+....+ + .++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~~--~-t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAVG--L-TGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHHC--C-SEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHcC--C-cEEEEECCcc
Confidence 356899999532111 11122345777888999874432 2223333333322 3 3566799986
Q ss_pred CcccCCCHHHHHHHHHhcCCeEEEeecCCCCCh
Q 028507 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159 (208)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i 159 (208)
.... ..+.......+.++.++. .|+.+
T Consensus 260 ~a~g----g~~l~i~~~~~~pi~~ig--~Ge~~ 286 (304)
T 1rj9_A 260 TAKG----GVLIPIVRTLKVPIKFVG--VGEGP 286 (304)
T ss_dssp SCCC----TTHHHHHHHHCCCEEEEE--CSSST
T ss_pred cccc----cHHHHHHHHHCCCeEEEe--CCCCh
Confidence 4322 233455666788777765 44443
No 361
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.56 E-value=0.0013 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999988643
No 362
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.56 E-value=0.0013 Score=51.83 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999988654
No 363
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.55 E-value=0.0021 Score=48.82 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.7
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~ 30 (208)
.+...|+|+|++|+|||||.+.|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 355789999999999999998765
No 364
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.55 E-value=0.0013 Score=49.61 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998764
No 365
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.55 E-value=0.0012 Score=47.92 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCCHHHHHHHhh
Q 028507 10 YKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~ 30 (208)
+.|+|+|++|+||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999886
No 366
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.54 E-value=0.0019 Score=47.24 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.+..-|+|.|+.|+|||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44578999999999999999988765
No 367
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.52 E-value=0.0023 Score=46.43 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=19.5
Q ss_pred CCceeEE-EEcCCCCCHHHHHHHhhc
Q 028507 7 LAKYKLV-FLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~-vvG~~~~GKstli~~l~~ 31 (208)
+++.||+ |+|+|||||+|....|..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556655 579999999999888763
No 368
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.52 E-value=0.0013 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-.++|+|+.|+|||||++.+.+-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998654
No 369
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.52 E-value=0.0015 Score=47.23 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
+.|+|+|++|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998853
No 370
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.51 E-value=0.0012 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-.++|+|+.|+|||||++.|.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 479999999999999999998643
No 371
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.48 E-value=0.0015 Score=51.41 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-.++|+|++|+|||||++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999988753
No 372
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.48 E-value=0.0021 Score=44.95 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+...|+|+|.+|+||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 373
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.48 E-value=0.0019 Score=46.22 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+...|+|+|++|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998764
No 374
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.48 E-value=0.0015 Score=49.90 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
.--++++|+.|+||||+++.|.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34688999999999999998863
No 375
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.47 E-value=0.0016 Score=48.27 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
++|+|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988754
No 376
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.47 E-value=0.002 Score=46.55 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.5
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
.+.|+|.|++|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998864
No 377
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.47 E-value=0.0019 Score=47.29 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=20.1
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhc
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
|+.+. -..+++.|+|++|+||||+...|..
T Consensus 1 ~~~~~-~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 1 MAHHH-HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---------CEEEEECCTTSCHHHHHHHHHH
T ss_pred CCccc-ccccceeeECCCCCCHHHHHHHHHH
Confidence 34433 4568999999999999999988753
No 378
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.45 E-value=0.0016 Score=47.67 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=18.4
Q ss_pred CCCCCCceeEEEEcCCCCCHHHHHHHhhc
Q 028507 3 PVSALAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 3 ~~~~~~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
|.+-++..-|+|.|++|+||||+++.|..
T Consensus 19 ~~~m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 19 PGSMARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp ----CCCCEEEEECCC---CHHHHHHHHH
T ss_pred CccccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33334567799999999999999998763
No 379
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.45 E-value=0.00066 Score=48.82 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
-|+|+|++|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999998863
No 380
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.45 E-value=0.002 Score=45.01 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988743
No 381
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.43 E-value=0.0017 Score=50.25 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=52.2
Q ss_pred EEEEEEcCCchhhhhc-hhh-----hccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCC
Q 028507 59 RLQLWDTAGQERFRSL-IPS-----YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV 132 (208)
Q Consensus 59 ~~~i~D~~G~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~ 132 (208)
.+.++|++|....... ... ..-..|-.+++.|..... .+......+....+ + .++++||.|... +
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~~--i-t~iilTKlD~~a-~-- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAVK--I-DGIILTKLDADA-R-- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHSC--C-CEEEEECGGGCS-C--
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhcC--C-CEEEEeCcCCcc-c--
Confidence 3667999996432211 111 122478889999976432 33333344443321 2 366679999522 1
Q ss_pred CHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 028507 133 SIEEGEAKSRELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 161 (208)
.-.+.......+.++.+++ +|+++++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 2345566777788888887 6776644
No 382
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.43 E-value=0.0011 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999988654
No 383
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.43 E-value=0.0019 Score=45.81 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|.|++|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 384
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.43 E-value=0.0019 Score=49.45 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
+...|+|+|++|+|||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988763
No 385
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.42 E-value=0.002 Score=47.26 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~ 30 (208)
+.+.|+|.|++|+||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999876
No 386
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.41 E-value=0.0019 Score=44.72 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|.|++|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999988763
No 387
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.41 E-value=0.0021 Score=47.92 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|+|.+|+||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999998874
No 388
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.40 E-value=0.0026 Score=48.03 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.5
Q ss_pred CceeEEEEcCCCCCHHHHHHHhh
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~ 30 (208)
+.+.|+|.|++|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999886
No 389
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.40 E-value=0.0026 Score=45.30 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=22.6
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-..+.|+|+|.+|+||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45799999999999999999988643
No 390
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.40 E-value=0.0017 Score=51.47 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.++|+|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999988753
No 391
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.40 E-value=0.0027 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
..+-|+|+|++|+|||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999988753
No 392
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.39 E-value=0.0018 Score=48.07 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=20.8
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
....|+++|++|+||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999998864
No 393
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.38 E-value=0.0018 Score=45.36 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|+|++|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999988764
No 394
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.37 E-value=0.0024 Score=46.74 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
.++|+|+|++|+||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998863
No 395
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.37 E-value=0.0021 Score=47.82 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
-|+|+|++|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998863
No 396
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.35 E-value=0.0016 Score=50.22 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|+.|+|||||++.|.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46788999999999999999653
No 397
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.35 E-value=0.0026 Score=49.27 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=19.9
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhc
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
|++++ |+ .-|+|+|++|+|||||...|..
T Consensus 1 ~~~m~-m~-~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 1 MTEMT-KP-FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp ------CC-EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCC-CC-ceEEEECCCcCcHHHHHHHHHH
Confidence 45443 33 4689999999999999988763
No 398
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.35 E-value=0.0019 Score=51.64 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|+|+.|+|||||++.+.+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999988643
No 399
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.31 E-value=0.0021 Score=49.78 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999988754
No 400
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.30 E-value=0.0023 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
-++|+|++|+|||||+..+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999988743
No 401
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.30 E-value=0.0023 Score=48.16 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
++|+|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999988754
No 402
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.30 E-value=0.0028 Score=46.98 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=20.6
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+.+.|+|.|++|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999987754
No 403
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.29 E-value=0.0011 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988654
No 404
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.28 E-value=0.0022 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
..++|+|+.|+|||||++.+.+--
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 459999999999999999998654
No 405
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.24 E-value=0.0025 Score=44.54 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999998864
No 406
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.23 E-value=0.0025 Score=49.88 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.8
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
.--++++|+.|+||||+++.|.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45688999999999999998763
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.21 E-value=0.0038 Score=45.66 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
+...|+|.|++|+||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999988743
No 408
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.20 E-value=0.0033 Score=43.39 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
-.|+|.|.+|+||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999988753
No 409
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0023 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-.++|+|+.|+|||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46899999999999999988743
No 410
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.18 E-value=0.0024 Score=44.46 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999888643
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.18 E-value=0.0028 Score=49.44 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=21.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=+++|+|+.|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998764
No 412
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.17 E-value=0.0028 Score=47.08 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
.-.|+|+|++|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 413
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.16 E-value=0.0028 Score=51.59 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=48.9
Q ss_pred EEEEEEEcCCchhhhh-ch---h---h----h-ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 028507 58 VRLQLWDTAGQERFRS-LI---P---S----Y-IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~-~~---~---~----~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 125 (208)
+.+.|+||+|...... +. . . + ....+-+++|+|.+.... .+ .....+....+ +. .+|+||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al-~~ak~f~~~~~--it-gvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AV-SQAKLFHEAVG--LT-GITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HH-HHHHHHHHHTC--CS-EEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HH-HHHHHHHhhcC--CC-EEEEEcCC
Confidence 3478999999532111 10 0 0 1 113567888999874321 11 22333433322 33 56679998
Q ss_pred CCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 028507 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 161 (208)
-.. ....+...+..++.++.++. +|+++++
T Consensus 450 ~ta----kgG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 450 GTA----KGGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp GCS----CCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred Ccc----cccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 522 12345566667788877765 5655543
No 414
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.16 E-value=0.0035 Score=49.17 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.1
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~ 30 (208)
.+.+||+|+|.+|+|||||+.++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 457999999999999999998764
No 415
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.15 E-value=0.0026 Score=48.24 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
-++|+|++|+|||||+..+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47899999999999999887543
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.14 E-value=0.004 Score=44.79 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+...|+|+|++|+||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998764
No 417
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.11 E-value=0.0037 Score=45.47 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
.-.++|.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 418
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.10 E-value=0.0033 Score=46.62 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-.++|+|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999988753
No 419
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.10 E-value=0.0034 Score=45.17 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
--++|+|++|+|||||+..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987
No 420
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.09 E-value=0.0034 Score=45.90 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999998864
No 421
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.07 E-value=0.0049 Score=47.46 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|+|++|+|||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988864
No 422
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.05 E-value=0.004 Score=44.27 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
..++|.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988753
No 423
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.97 E-value=0.0039 Score=50.18 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=+++|+|++|+|||||++.+.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999988764
No 424
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.96 E-value=0.014 Score=44.94 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
..++|.|++|+|||+|.+.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999988643
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.94 E-value=0.0041 Score=50.58 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
-++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998864
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.94 E-value=0.0041 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
.-.++|+|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999998885
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.93 E-value=0.0052 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..|+|+|++|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 428
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.91 E-value=0.0063 Score=43.87 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=22.5
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhc
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
|+.+..-.-|-|.++|..|+||||+.+.|..
T Consensus 1 ~~~~~~~~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 1 MAHHHHHHMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp -----CCSCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcccccceeEEEEECCCCCCHHHHHHHHHH
Confidence 5555555559999999999999999998764
No 429
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.91 E-value=0.0041 Score=51.91 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=.++++|++|+|||||++.+.+-.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 368999999999999999887653
No 430
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.91 E-value=0.0064 Score=50.27 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=.++|+|+.|+|||||++.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
No 431
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.89 E-value=0.0059 Score=43.49 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
.|+|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 432
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.89 E-value=0.0048 Score=44.49 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.1
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+.+.|+|+|++|+||||+.+.|..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999987754
No 433
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.88 E-value=0.0055 Score=41.62 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHhh
Q 028507 12 LVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~ 30 (208)
.+|+|+.|+|||||+.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999875
No 434
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0062 Score=51.03 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
.++|+|+.|+|||||++.|.+...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 589999999999999999986543
No 435
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.85 E-value=0.0077 Score=48.14 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
..-|+|+|++|+||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356888999999999999998753
No 436
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.84 E-value=0.0051 Score=44.51 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998864
No 437
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.84 E-value=0.0065 Score=44.47 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=21.5
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
.+...|+|+|++|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999988764
No 438
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.82 E-value=0.0064 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988654
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.81 E-value=0.0067 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
-++|+|+.|+|||||++.+.+...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 578999999999999999987543
No 440
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.77 E-value=0.004 Score=51.92 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=.++++|++|+|||||++.+.+-.
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368999999999999999877543
No 441
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.73 E-value=0.0056 Score=45.98 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999988754
No 442
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.73 E-value=0.0056 Score=46.34 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.7
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.-.++|.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357899999999999999988753
No 443
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.72 E-value=0.0085 Score=43.63 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=20.9
Q ss_pred CCCceeEEEEcCCCCCHHHHHHHhh
Q 028507 6 ALAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 6 ~~~~~~i~vvG~~~~GKstli~~l~ 30 (208)
..+..-|+|.|.+|+||||+++.|.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3456779999999999999998876
No 444
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.72 E-value=0.0043 Score=51.96 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCc
Confidence 368999999999999999988653
No 445
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.72 E-value=0.0052 Score=44.11 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
-.+++.|+||+|||++..++..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999887764
No 446
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.71 E-value=0.0062 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
..++|.|++|+|||+|.+.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999998875
No 447
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.70 E-value=0.0055 Score=46.08 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998874
No 448
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.70 E-value=0.0084 Score=50.28 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
=.++|+|+.|+|||||++.+.+...
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3689999999999999999987543
No 449
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.70 E-value=0.008 Score=46.03 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=20.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+..-|+|+||+|+|||+|...|..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHH
Confidence 345688999999999999998864
No 450
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.69 E-value=0.0047 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
=.++++|++|+|||||++.+.+-.
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 368999999999999999887644
No 451
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.69 E-value=0.016 Score=41.17 Aligned_cols=85 Identities=8% Similarity=0.062 Sum_probs=55.5
Q ss_pred EEEEEEEcCCchhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCcccCCCHH
Q 028507 58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSIE 135 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~D~~~~~~~~~~ 135 (208)
+.+.|+|+|+.. .......+..+|.+|++...+.. + ..+...+..+.... .+..++.+|.|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 568999999754 33445566789999999988743 4 56666666665443 345677899999985322 123
Q ss_pred HHHHHHHhcCCeEE
Q 028507 136 EGEAKSRELNVMFI 149 (208)
Q Consensus 136 ~~~~~~~~~~~~~~ 149 (208)
+..+....++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 44555555665554
No 452
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.68 E-value=0.0085 Score=43.30 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhh
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~ 30 (208)
|+..-|+|.|++|+||||+++.|.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHH
Confidence 567789999999999999999876
No 453
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.64 E-value=0.0095 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
.-|+|+|+.|+|||+|...|..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999988874
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.63 E-value=0.0063 Score=45.34 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.0
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
+.+.|+|.|.+|+||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4468899999999999999887643
No 455
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.63 E-value=0.0054 Score=51.25 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999887543
No 456
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.62 E-value=0.0065 Score=46.66 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-.++|.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35889999999999999988753
No 457
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.59 E-value=0.0078 Score=42.94 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=21.7
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
....|+|+|++|+|||+|...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34668999999999999999987543
No 458
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.59 E-value=0.0069 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-.+++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999999988754
No 459
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.57 E-value=0.0066 Score=46.22 Aligned_cols=85 Identities=14% Similarity=0.058 Sum_probs=47.3
Q ss_pred EEEEEEEcCCchhhhh-ch---hhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccC
Q 028507 58 VRLQLWDTAGQERFRS-LI---PSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ 131 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~-~~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~ 131 (208)
..+.|+||+|...... .. ...+. ..+..++|+|++.. ...+..+...+. .-+. .-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~-~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPV-NQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCC-CEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCC-CEEEEeCCCcccc--
Confidence 4689999999664322 11 11222 36788899988732 233333333222 1112 2455699996432
Q ss_pred CCHHHHHHHHHhcCCeEEEee
Q 028507 132 VSIEEGEAKSRELNVMFIETS 152 (208)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~s 152 (208)
...+...+...++++.+++
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2355666777788776654
No 460
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.57 E-value=0.009 Score=49.37 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
.++|+|+.|+|||||++.+.+...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987543
No 461
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.55 E-value=0.0068 Score=46.01 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.-+++.|+||+|||+|.+.+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45667799999999999988743
No 462
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.54 E-value=0.014 Score=41.74 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=26.3
Q ss_pred CCCCCCCCceeEEEEcCCCCCHHHHHHHhhc
Q 028507 1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 1 m~~~~~~~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
|+|..+.+.+-|+|.|.+||||+++.+.+..
T Consensus 3 ~~~~~~~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 3 MAPLGGAPRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCTTBCCCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccccCCCEEEEEECCCCCChHHHHHHHHH
Confidence 7777666778999999999999999887764
No 463
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.51 E-value=0.0097 Score=49.89 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
.++|+|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999987543
No 464
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.51 E-value=0.008 Score=47.18 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHhh
Q 028507 12 LVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~ 30 (208)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876
No 465
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.48 E-value=0.0084 Score=45.87 Aligned_cols=92 Identities=17% Similarity=0.108 Sum_probs=50.5
Q ss_pred EEEEEEEcCCchhhhh-ch------hhh-----ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 028507 58 VRLQLWDTAGQERFRS-LI------PSY-----IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125 (208)
Q Consensus 58 ~~~~i~D~~G~~~~~~-~~------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 125 (208)
+.+.|+|+||...... +. ... -...+.+++|+|++.. .+.+.. ...+.... ++ .-+|.||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~~--~i-~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEAV--NV-TGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHHS--CC-CEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhcC--CC-CEEEEeCCC
Confidence 3589999999532111 00 111 1247889999998732 222222 23333322 12 345569999
Q ss_pred CCcccCCCHHHHHHHHHhcCCeEEEeecCCCCChHH
Q 028507 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKP 161 (208)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 161 (208)
.... ...+.......+.|+.+++ .|+.+++
T Consensus 261 ~~~~----gG~~l~~~~~~~~Pi~~i~--~Ge~~~d 290 (306)
T 1vma_A 261 GTAK----GGITLAIARELGIPIKFIG--VGEKAED 290 (306)
T ss_dssp GCSC----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred Cccc----hHHHHHHHHHHCCCEEEEe--CCCChhh
Confidence 5322 2346677778888887776 3444443
No 466
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.47 E-value=0.011 Score=48.79 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
.++|+|+.|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999987543
No 467
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.47 E-value=0.007 Score=46.94 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
++|.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988763
No 468
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.44 E-value=0.0076 Score=47.04 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-.++|.|++|+|||||++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 469
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.44 E-value=0.012 Score=44.73 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=19.0
Q ss_pred ceeEEEEcCCCCCHHHHHHHhh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~ 30 (208)
...++|.|++|+|||+|.+.+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999998665
No 470
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.39 E-value=0.0089 Score=43.68 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999877653
No 471
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.37 E-value=0.0083 Score=46.77 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcCc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~~ 33 (208)
--+.|+|++|+|||||+..+....
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999988653
No 472
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.37 E-value=0.0094 Score=45.17 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
-.+++.|++|+|||++.+.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 473
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.012 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHhhcCcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~~~ 34 (208)
++|+|+.|+|||||++.+.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 78999999999999999987544
No 474
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.35 E-value=0.012 Score=43.21 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
..|+|.|..|+||||+.+.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999988743
No 475
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.042 Score=40.01 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=19.0
Q ss_pred eeEEEE--cCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFL--GDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vv--G~~~~GKstli~~l~~~ 32 (208)
=||+|+ |+++.|||+|++++.+.
T Consensus 28 nkilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 28 NKILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CceEEEecCcccccHHHHHHHHhcc
Confidence 355555 99999999999999976
No 476
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.33 E-value=0.01 Score=46.43 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCc
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDK 33 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~ 33 (208)
.++|.|++|+|||+|++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999887543
No 477
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.31 E-value=0.0057 Score=46.42 Aligned_cols=24 Identities=13% Similarity=0.222 Sum_probs=17.4
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+.+-|+|.|++|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988763
No 478
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.31 E-value=0.076 Score=37.98 Aligned_cols=85 Identities=7% Similarity=-0.031 Sum_probs=56.1
Q ss_pred EEEEEEEcCCc-hhhhhchhhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCcccCCCHHH
Q 028507 58 VRLQLWDTAGQ-ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE 136 (208)
Q Consensus 58 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D~~~~~~~~~~~ 136 (208)
+.+.|+|+|+. .. ......+..+|.+|++...+ ..+...+...+..+.... +.++.+|+|+.+.... ....+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 56899999985 32 23345567899999999876 456677777777776533 3668889999985320 11344
Q ss_pred HHHHHHhcCCeEE
Q 028507 137 GEAKSRELNVMFI 149 (208)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (208)
..+...+++.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 5555555666554
No 479
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.28 E-value=0.013 Score=43.80 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
....++|.|++|+|||+|.+.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3467899999999999999988754
No 480
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.28 E-value=0.0099 Score=46.00 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
+++.|++|+||||+++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999988754
No 481
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.26 E-value=0.016 Score=43.95 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-.++|+|++|+|||++.+.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999988753
No 482
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.25 E-value=0.012 Score=43.22 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.8
Q ss_pred CCceeEEEEcCCCCCHHHHHHHhhc
Q 028507 7 LAKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 7 ~~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
|+..-|+|.|++|+||||+++.|..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999998763
No 483
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.25 E-value=0.017 Score=44.22 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHhhc
Q 028507 10 YKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~ 31 (208)
.-|+|+|++|+|||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4578899999999999998863
No 484
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.24 E-value=0.013 Score=45.69 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=19.2
Q ss_pred ceeEEEEcCCCCCHHHHHHHhh
Q 028507 9 KYKLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~ 30 (208)
..+|+|+|++|+||||+...|.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 3679999999999999998665
No 485
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.22 E-value=0.011 Score=45.59 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-.|+|.|++|+|||+|.+.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999988754
No 486
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.16 E-value=0.14 Score=39.09 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=16.3
Q ss_pred EEEEcCCCCCHHHHHHHhhcC
Q 028507 12 LVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 12 i~vvG~~~~GKstli~~l~~~ 32 (208)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 344566999999999988643
No 487
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.09 E-value=0.014 Score=44.61 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.1
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhc
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~ 31 (208)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988764
No 488
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.08 E-value=0.015 Score=41.98 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.2
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhc
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~ 31 (208)
+..-|+|-|.+|+||||+++.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999998763
No 489
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.07 E-value=0.014 Score=51.40 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcCcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYDKF 34 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~~~ 34 (208)
.++|+|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999987654
No 490
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.05 E-value=0.014 Score=44.87 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
...++|.|++|+|||+|.+.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356999999999999999988753
No 491
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.05 E-value=0.016 Score=40.44 Aligned_cols=24 Identities=17% Similarity=0.422 Sum_probs=20.6
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
..=+++.|++|+||||+.-.|...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 345899999999999999988864
No 492
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.04 E-value=0.015 Score=41.58 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=17.3
Q ss_pred eEEEEcCCCCCHHHHHHHhh
Q 028507 11 KLVFLGDQSVGKTSIITRFM 30 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~ 30 (208)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 45788999999999999875
No 493
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.04 E-value=0.013 Score=45.28 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988743
No 494
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.013 Score=46.89 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
-|++.||||+|||+|.+++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998753
No 495
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.01 E-value=0.012 Score=46.02 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
-.++|.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988743
No 496
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.97 E-value=0.015 Score=44.77 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhcC
Q 028507 11 KLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~~ 32 (208)
-++|.|++|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5788999999999999998754
No 497
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.97 E-value=0.0061 Score=45.37 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhc
Q 028507 11 KLVFLGDQSVGKTSIITRFMY 31 (208)
Q Consensus 11 ~i~vvG~~~~GKstli~~l~~ 31 (208)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999998874
No 498
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.97 E-value=0.014 Score=47.45 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.3
Q ss_pred ceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 9 KYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 9 ~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
.-+++|+|++|+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999987643
No 499
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.92 E-value=0.0099 Score=49.22 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=21.3
Q ss_pred CceeEEEEcCCCCCHHHHHHHhhcC
Q 028507 8 AKYKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 8 ~~~~i~vvG~~~~GKstli~~l~~~ 32 (208)
+...|+|+|++|+|||||.+.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3467999999999999999988754
No 500
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.015 Score=46.64 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHhhcC
Q 028507 10 YKLVFLGDQSVGKTSIITRFMYD 32 (208)
Q Consensus 10 ~~i~vvG~~~~GKstli~~l~~~ 32 (208)
--|++.||||+|||.|.+++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
Done!