Query 028511
Match_columns 208
No_of_seqs 190 out of 1503
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 12:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10146 aminoalkylphosphonic 99.9 2.3E-21 5.1E-26 132.4 12.6 134 22-177 2-137 (144)
2 PRK10140 putative acetyltransf 99.9 1.9E-20 4E-25 130.4 15.2 146 22-191 2-154 (162)
3 TIGR03827 GNAT_ablB putative b 99.9 8E-21 1.7E-25 142.2 14.2 152 20-202 112-266 (266)
4 PRK03624 putative acetyltransf 99.9 5.5E-20 1.2E-24 124.8 14.4 129 23-179 2-131 (140)
5 PRK09491 rimI ribosomal-protei 99.8 5.2E-20 1.1E-24 126.1 13.6 146 23-202 1-146 (146)
6 COG1247 Sortase and related ac 99.8 1.6E-19 3.5E-24 123.3 14.0 158 23-205 1-167 (169)
7 TIGR02406 ectoine_EctA L-2,4-d 99.8 1.2E-19 2.6E-24 125.5 12.8 131 26-181 1-131 (157)
8 TIGR02382 wecD_rffC TDP-D-fuco 99.8 3.5E-19 7.5E-24 127.3 14.6 133 21-179 41-186 (191)
9 PTZ00330 acetyltransferase; Pr 99.8 8.8E-19 1.9E-23 120.1 15.6 135 20-178 3-141 (147)
10 PRK10975 TDP-fucosamine acetyl 99.8 2E-18 4.3E-23 123.7 13.2 131 23-179 46-189 (194)
11 KOG3216 Diamine acetyltransfer 99.8 6.4E-18 1.4E-22 110.9 13.9 139 21-178 1-146 (163)
12 COG0456 RimI Acetyltransferase 99.8 5.4E-18 1.2E-22 119.7 14.6 147 21-182 9-158 (177)
13 KOG3235 Subunit of the major N 99.8 2.2E-18 4.8E-23 113.6 11.2 151 24-203 2-154 (193)
14 TIGR01575 rimI ribosomal-prote 99.8 1.2E-17 2.6E-22 112.0 14.2 120 33-182 1-120 (131)
15 PHA00673 acetyltransferase dom 99.8 9.8E-18 2.1E-22 113.1 13.3 129 28-178 11-146 (154)
16 PRK10809 ribosomal-protein-S5- 99.8 1.7E-17 3.7E-22 118.9 14.9 153 16-191 10-179 (194)
17 PF13527 Acetyltransf_9: Acety 99.8 3.6E-18 7.8E-23 114.2 10.4 125 25-176 1-127 (127)
18 PRK07922 N-acetylglutamate syn 99.8 1.6E-17 3.5E-22 116.1 13.8 124 21-178 3-127 (169)
19 PLN02706 glucosamine 6-phospha 99.8 2.9E-17 6.3E-22 113.0 14.9 134 22-178 5-144 (150)
20 PF00583 Acetyltransf_1: Acety 99.8 5.9E-18 1.3E-22 104.6 9.5 80 87-174 4-83 (83)
21 KOG3139 N-acetyltransferase [G 99.8 2.4E-17 5.1E-22 109.5 12.7 134 24-182 14-150 (165)
22 PF13523 Acetyltransf_8: Acety 99.8 5.1E-17 1.1E-21 112.0 15.0 134 26-180 1-143 (152)
23 PF13420 Acetyltransf_4: Acety 99.8 6.8E-18 1.5E-22 116.7 10.6 137 26-188 1-149 (155)
24 PRK10151 ribosomal-protein-L7/ 99.8 2.9E-17 6.3E-22 116.2 14.0 153 21-202 8-176 (179)
25 TIGR03103 trio_acet_GNAT GNAT- 99.8 5E-17 1.1E-21 132.3 16.7 139 20-179 79-218 (547)
26 PRK10314 putative acyltransfer 99.8 1.3E-17 2.9E-22 114.6 11.4 141 27-203 10-151 (153)
27 PLN02825 amino-acid N-acetyltr 99.7 1.1E-17 2.5E-22 133.6 11.1 147 24-202 368-514 (515)
28 PRK15130 spermidine N1-acetylt 99.7 1.4E-17 3E-22 118.6 10.3 146 21-192 4-159 (186)
29 PRK10514 putative acetyltransf 99.7 9E-17 1.9E-21 109.9 12.6 122 24-181 2-129 (145)
30 PRK07757 acetyltransferase; Pr 99.7 1.5E-16 3.2E-21 109.7 13.1 123 23-179 1-123 (152)
31 PF13673 Acetyltransf_10: Acet 99.7 7.8E-17 1.7E-21 106.1 10.9 106 33-173 1-117 (117)
32 TIGR03585 PseH pseudaminic aci 99.7 1.6E-16 3.4E-21 110.0 10.1 138 25-189 2-149 (156)
33 TIGR01686 FkbH FkbH-like domai 99.7 5.6E-16 1.2E-20 119.0 14.1 133 19-176 182-319 (320)
34 PRK09831 putative acyltransfer 99.7 1.4E-16 3.1E-21 109.1 9.7 117 24-180 1-128 (147)
35 TIGR01890 N-Ac-Glu-synth amino 99.7 1.9E-16 4.1E-21 126.1 11.2 125 24-180 283-407 (429)
36 TIGR03448 mycothiol_MshD mycot 99.7 1.9E-15 4.1E-20 115.0 16.2 137 20-179 146-289 (292)
37 KOG3396 Glucosamine-phosphate 99.7 7.7E-16 1.7E-20 99.1 11.3 137 21-178 4-144 (150)
38 PRK05279 N-acetylglutamate syn 99.7 2.2E-16 4.8E-21 126.2 10.7 124 24-179 295-418 (441)
39 PRK12308 bifunctional arginino 99.7 7.3E-16 1.6E-20 127.6 14.0 125 21-179 461-585 (614)
40 PRK10562 putative acetyltransf 99.7 1.2E-15 2.6E-20 104.3 12.6 118 26-179 2-126 (145)
41 COG1246 ArgA N-acetylglutamate 99.7 1.1E-15 2.5E-20 101.6 11.0 122 25-178 2-123 (153)
42 KOG3234 Acetyltransferase, (GN 99.7 9.4E-16 2E-20 101.2 9.4 154 24-206 2-155 (173)
43 COG3153 Predicted acetyltransf 99.7 2.5E-15 5.4E-20 103.1 11.6 131 22-182 2-135 (171)
44 PRK01346 hypothetical protein; 99.7 4.5E-15 9.8E-20 118.1 14.9 135 20-179 3-137 (411)
45 PHA01807 hypothetical protein 99.6 8.8E-15 1.9E-19 99.9 12.1 121 28-171 8-136 (153)
46 PF13302 Acetyltransf_3: Acety 99.6 1.6E-14 3.4E-19 98.3 13.1 128 23-174 1-142 (142)
47 PF13508 Acetyltransf_7: Acety 99.6 1.2E-14 2.6E-19 88.8 11.2 68 88-175 12-79 (79)
48 TIGR03448 mycothiol_MshD mycot 99.6 3.2E-14 7E-19 108.3 12.7 120 28-178 5-128 (292)
49 PF08445 FR47: FR47-like prote 99.6 7.1E-14 1.5E-18 86.4 9.5 62 116-178 21-82 (86)
50 PRK13688 hypothetical protein; 99.5 3.4E-13 7.4E-18 92.6 10.4 115 26-179 20-134 (156)
51 KOG3138 Predicted N-acetyltran 99.5 2.9E-13 6.3E-18 94.0 10.1 156 23-202 16-172 (187)
52 cd02169 Citrate_lyase_ligase C 99.5 4.1E-13 8.8E-18 101.2 10.8 71 88-179 15-85 (297)
53 KOG2488 Acetyltransferase (GNA 99.5 5.1E-13 1.1E-17 91.3 10.2 127 32-182 54-186 (202)
54 COG3393 Predicted acetyltransf 99.4 1.2E-12 2.5E-17 94.5 10.3 78 88-179 186-263 (268)
55 COG2153 ElaA Predicted acyltra 99.4 2.7E-12 5.8E-17 84.0 8.9 143 26-204 10-154 (155)
56 COG3818 Predicted acetyltransf 99.4 4.7E-12 1E-16 81.2 8.4 144 20-182 4-152 (167)
57 COG1670 RimL Acetyltransferase 99.4 1.4E-11 3E-16 87.3 11.5 90 88-187 77-167 (187)
58 TIGR00124 cit_ly_ligase [citra 99.3 1.1E-11 2.5E-16 94.8 10.8 73 88-181 40-112 (332)
59 KOG3397 Acetyltransferases [Ge 99.3 3.6E-11 7.9E-16 81.0 11.6 79 88-181 66-144 (225)
60 COG3981 Predicted acetyltransf 99.3 2.4E-11 5.3E-16 82.1 8.6 84 87-179 77-160 (174)
61 KOG4144 Arylalkylamine N-acety 99.2 2.2E-11 4.7E-16 80.4 4.3 153 19-179 7-162 (190)
62 TIGR01211 ELP3 histone acetylt 99.2 1.4E-10 3.1E-15 93.6 9.5 84 87-178 422-516 (522)
63 PF08444 Gly_acyl_tr_C: Aralky 99.1 3.2E-10 6.9E-15 68.9 6.7 73 87-177 7-79 (89)
64 PF13718 GNAT_acetyltr_2: GNAT 99.0 6.4E-09 1.4E-13 73.3 10.4 83 114-202 88-195 (196)
65 PF12746 GNAT_acetyltran: GNAT 99.0 3.4E-08 7.4E-13 73.2 13.3 126 20-182 125-251 (265)
66 cd04301 NAT_SF N-Acyltransfera 98.9 1.4E-08 3E-13 58.4 7.8 58 87-155 7-64 (65)
67 PF14542 Acetyltransf_CG: GCN5 98.7 1E-07 2.2E-12 57.5 7.9 66 87-171 7-72 (78)
68 COG4552 Eis Predicted acetyltr 98.7 8.2E-08 1.8E-12 72.3 8.0 81 88-179 48-128 (389)
69 KOG4135 Predicted phosphogluco 98.7 1.2E-06 2.6E-11 57.9 11.9 65 115-179 106-171 (185)
70 COG1444 Predicted P-loop ATPas 98.7 4.3E-07 9.3E-12 75.8 12.2 85 114-205 529-613 (758)
71 PF12568 DUF3749: Acetyltransf 98.6 1.3E-06 2.9E-11 56.7 10.8 85 62-176 35-123 (128)
72 COG2388 Predicted acetyltransf 98.4 2.6E-06 5.6E-11 53.3 7.0 55 88-155 24-78 (99)
73 COG3053 CitC Citrate lyase syn 98.3 2.4E-05 5.1E-10 57.9 12.3 75 87-182 45-119 (352)
74 COG5628 Predicted acetyltransf 98.3 3.6E-06 7.7E-11 53.6 6.4 74 88-174 46-119 (143)
75 PF04958 AstA: Arginine N-succ 98.3 4.4E-05 9.6E-10 58.5 13.2 142 23-176 1-186 (342)
76 PF00765 Autoind_synth: Autoin 98.3 2.4E-05 5.2E-10 55.2 10.5 133 29-178 5-155 (182)
77 COG0454 WecD Histone acetyltra 98.1 4.8E-06 1E-10 54.0 4.3 44 122-173 87-130 (156)
78 PRK13834 putative autoinducer 98.1 0.00018 3.9E-09 51.9 12.4 132 30-177 14-164 (207)
79 TIGR03694 exosort_acyl putativ 98.0 7E-05 1.5E-09 55.4 9.9 136 24-176 8-196 (241)
80 PRK10456 arginine succinyltran 98.0 0.00011 2.4E-09 56.3 10.7 143 23-177 1-185 (344)
81 PF06852 DUF1248: Protein of u 98.0 0.00038 8.3E-09 48.7 11.7 81 88-178 56-137 (181)
82 COG3375 Uncharacterized conser 97.9 0.00072 1.6E-08 48.3 12.2 135 23-181 2-140 (266)
83 PF13480 Acetyltransf_6: Acety 97.9 0.00066 1.4E-08 45.6 11.4 107 24-158 20-136 (142)
84 COG3882 FkbH Predicted enzyme 97.7 0.00022 4.8E-09 56.6 8.5 135 21-178 411-550 (574)
85 TIGR03245 arg_AOST_alph argini 97.7 0.0007 1.5E-08 51.8 10.2 141 25-177 1-184 (336)
86 COG1243 ELP3 Histone acetyltra 97.7 6.8E-05 1.5E-09 59.0 4.5 51 125-178 459-509 (515)
87 TIGR03243 arg_catab_AOST argin 97.7 0.00076 1.7E-08 51.6 9.9 141 25-177 1-183 (335)
88 TIGR03244 arg_catab_AstA argin 97.6 0.00086 1.9E-08 51.4 9.1 141 25-177 1-183 (336)
89 PF05301 Mec-17: Touch recepto 97.5 0.00099 2.2E-08 42.9 7.7 81 88-171 18-98 (120)
90 PF01233 NMT: Myristoyl-CoA:pr 97.5 0.005 1.1E-07 41.9 11.4 118 19-154 19-148 (162)
91 PF13880 Acetyltransf_13: ESCO 97.4 0.00026 5.6E-09 41.3 3.5 29 116-144 5-33 (70)
92 COG3916 LasI N-acyl-L-homoseri 97.4 0.0055 1.2E-07 43.5 10.5 136 27-178 10-163 (209)
93 KOG3698 Hyaluronoglucosaminida 97.4 0.00066 1.4E-08 55.0 6.7 163 4-179 658-879 (891)
94 KOG2535 RNA polymerase II elon 97.1 0.001 2.2E-08 50.8 4.8 48 127-177 498-546 (554)
95 KOG4601 Uncharacterized conser 97.0 0.0048 1E-07 44.3 7.2 133 25-170 22-159 (264)
96 PRK14852 hypothetical protein; 96.9 0.0052 1.1E-07 53.7 8.1 145 22-183 27-186 (989)
97 COG3138 AstA Arginine/ornithin 96.7 0.0069 1.5E-07 45.0 6.2 105 23-139 1-142 (336)
98 PHA01733 hypothetical protein 96.5 0.022 4.8E-07 38.5 7.3 95 87-203 55-150 (153)
99 TIGR03019 pepcterm_femAB FemAB 96.5 0.087 1.9E-06 41.0 11.8 128 23-180 151-283 (330)
100 PHA00432 internal virion prote 96.5 0.0062 1.3E-07 40.4 4.5 30 149-178 92-121 (137)
101 cd04264 DUF619-NAGS DUF619 dom 96.5 0.017 3.8E-07 36.4 6.2 44 115-163 33-76 (99)
102 PF01853 MOZ_SAS: MOZ/SAS fami 96.4 0.033 7.1E-07 39.2 7.7 50 88-150 65-114 (188)
103 PF04377 ATE_C: Arginine-tRNA- 96.4 0.15 3.4E-06 33.8 11.2 61 87-161 47-107 (128)
104 KOG2036 Predicted P-loop ATPas 96.3 0.013 2.8E-07 49.1 6.4 33 116-148 614-646 (1011)
105 PRK01305 arginyl-tRNA-protein 96.3 0.28 6.1E-06 36.3 12.9 74 87-178 152-227 (240)
106 TIGR03827 GNAT_ablB putative b 95.9 0.02 4.4E-07 43.1 5.3 63 132-204 21-83 (266)
107 PF09390 DUF1999: Protein of u 95.9 0.3 6.5E-06 32.6 10.1 125 24-177 1-140 (161)
108 PLN03238 probable histone acet 95.4 0.092 2E-06 39.4 6.9 49 88-149 140-188 (290)
109 cd04265 DUF619-NAGS-U DUF619 d 95.3 0.067 1.5E-06 33.7 5.1 48 115-168 33-80 (99)
110 KOG2779 N-myristoyl transferas 95.2 0.17 3.6E-06 39.2 7.8 115 19-151 76-202 (421)
111 COG2401 ABC-type ATPase fused 94.8 0.017 3.7E-07 45.8 1.7 65 113-177 238-307 (593)
112 PF02474 NodA: Nodulation prot 94.6 0.059 1.3E-06 37.2 3.7 120 29-172 15-137 (196)
113 PLN03239 histone acetyltransfe 94.4 0.18 4E-06 39.0 6.5 34 117-150 214-247 (351)
114 PF02799 NMT_C: Myristoyl-CoA: 94.4 1.2 2.7E-05 31.6 10.1 129 24-176 29-163 (190)
115 PTZ00064 histone acetyltransfe 94.2 0.17 3.7E-06 41.0 6.1 50 88-150 369-418 (552)
116 PF11124 Pho86: Inorganic phos 93.4 1.6 3.4E-05 33.3 9.5 83 88-177 178-270 (304)
117 PF04768 DUF619: Protein of un 93.3 2 4.3E-05 30.1 11.1 109 33-175 33-143 (170)
118 PF13444 Acetyltransf_5: Acety 93.3 0.4 8.6E-06 30.3 5.6 50 89-138 41-100 (101)
119 PLN00104 MYST -like histone ac 93.1 0.21 4.5E-06 40.2 4.9 49 88-149 291-339 (450)
120 COG2935 Putative arginyl-tRNA: 92.6 0.67 1.5E-05 34.1 6.5 61 87-161 159-219 (253)
121 KOG2747 Histone acetyltransfer 91.4 0.49 1.1E-05 37.4 5.0 34 116-149 260-293 (396)
122 PRK00756 acyltransferase NodA; 90.1 1.1 2.5E-05 30.8 5.2 110 29-159 15-127 (196)
123 PF09924 DUF2156: Uncharacteri 90.0 1.9 4.1E-05 33.1 7.2 108 24-159 133-248 (299)
124 COG5092 NMT1 N-myristoyl trans 89.2 3 6.5E-05 32.0 7.3 109 26-152 84-201 (451)
125 KOG3014 Protein involved in es 89.0 3.6 7.8E-05 30.4 7.4 33 114-146 181-213 (257)
126 cd04266 DUF619-NAGS-FABP DUF61 88.8 2.2 4.8E-05 27.4 5.6 49 114-168 37-87 (108)
127 KOG2779 N-myristoyl transferas 88.7 5.6 0.00012 31.1 8.6 131 23-176 260-395 (421)
128 COG5630 ARG2 Acetylglutamate s 88.4 2 4.3E-05 33.8 6.1 111 32-176 345-458 (495)
129 KOG2696 Histone acetyltransfer 87.8 1 2.2E-05 35.2 4.2 32 116-147 217-248 (403)
130 PF11090 DUF2833: Protein of u 87.8 2 4.4E-05 26.2 4.7 28 150-177 56-83 (86)
131 PF04339 DUF482: Protein of un 86.8 9.9 0.00021 30.3 9.3 129 23-186 199-337 (370)
132 COG5027 SAS2 Histone acetyltra 84.0 0.93 2E-05 35.1 2.4 31 116-146 262-292 (395)
133 PRK04531 acetylglutamate kinas 83.2 14 0.00031 29.8 8.9 55 115-175 309-365 (398)
134 PHA02769 hypothetical protein; 82.7 1.3 2.9E-05 28.3 2.4 44 134-179 94-140 (154)
135 COG5092 NMT1 N-myristoyl trans 78.6 11 0.00024 29.1 6.3 149 17-175 252-411 (451)
136 cd03173 DUF619-like DUF619 dom 75.9 16 0.00036 23.0 5.7 48 115-168 32-79 (98)
137 PRK02983 lysS lysyl-tRNA synth 72.4 28 0.00061 32.2 8.4 59 87-159 429-487 (1094)
138 PF11039 DUF2824: Protein of u 71.1 28 0.00061 23.2 9.5 79 88-183 47-127 (151)
139 PF12261 T_hemolysin: Thermost 67.4 17 0.00037 25.7 4.9 59 113-178 84-142 (179)
140 PF00925 GTP_cyclohydro2: GTP 65.6 8.4 0.00018 27.0 3.1 46 125-179 122-167 (169)
141 cd07235 MRD Mitomycin C resist 65.0 6.4 0.00014 25.2 2.3 24 153-177 4-27 (122)
142 COG2266 GTP:adenosylcobinamide 61.9 26 0.00056 24.7 4.8 46 133-179 25-70 (177)
143 COG3473 Maleate cis-trans isom 60.9 19 0.00042 26.1 4.1 37 142-178 110-149 (238)
144 PF04816 DUF633: Family of unk 60.7 12 0.00027 27.1 3.3 47 132-178 74-122 (205)
145 COG2898 Uncharacterized conser 60.7 62 0.0013 27.4 7.5 58 87-157 401-458 (538)
146 cd09012 Glo_EDI_BRP_like_24 Th 59.3 15 0.00033 23.6 3.3 19 160-178 10-28 (124)
147 COG0807 RibA GTP cyclohydrolas 57.1 36 0.00077 24.5 5.0 53 121-182 119-171 (193)
148 PF12953 DUF3842: Domain of un 56.0 20 0.00042 23.9 3.3 46 128-177 7-52 (131)
149 TIGR02990 ectoine_eutA ectoine 55.2 21 0.00047 26.5 3.8 46 134-179 104-152 (239)
150 cd08353 Glo_EDI_BRP_like_7 Thi 54.0 10 0.00022 25.1 1.8 28 150-178 4-31 (142)
151 cd08358 Glo_EDI_BRP_like_21 Th 53.0 27 0.00058 23.1 3.7 20 160-179 12-32 (127)
152 cd08356 Glo_EDI_BRP_like_17 Th 52.5 9.4 0.0002 24.3 1.5 21 160-180 11-31 (113)
153 PRK09318 bifunctional 3,4-dihy 51.3 40 0.00088 27.1 5.0 33 147-181 325-357 (387)
154 PF04339 DUF482: Protein of un 49.0 56 0.0012 26.2 5.5 66 121-189 105-170 (370)
155 PF08901 DUF1847: Protein of u 48.5 27 0.00058 24.1 3.1 41 138-178 43-87 (157)
156 cd08350 BLMT_like BLMT, a bleo 48.4 16 0.00035 23.3 2.1 21 160-180 12-32 (120)
157 PF04555 XhoI: Restriction end 46.9 99 0.0022 22.1 5.7 39 121-159 144-182 (196)
158 PRK09319 bifunctional 3,4-dihy 46.1 52 0.0011 27.9 5.0 35 145-181 346-380 (555)
159 cd04263 DUF619-NAGK-FABP DUF61 45.8 76 0.0016 20.0 5.7 48 115-168 32-79 (98)
160 COG2384 Predicted SAM-dependen 45.4 40 0.00087 24.8 3.8 49 131-179 92-142 (226)
161 PF13380 CoA_binding_2: CoA bi 45.2 57 0.0012 21.1 4.3 53 117-178 56-108 (116)
162 TIGR00505 ribA GTP cyclohydrol 44.8 54 0.0012 23.5 4.4 47 125-180 121-167 (191)
163 PRK00393 ribA GTP cyclohydrola 44.1 56 0.0012 23.5 4.5 48 124-180 123-170 (197)
164 PF04015 DUF362: Domain of unk 42.6 54 0.0012 23.5 4.2 44 135-178 22-67 (206)
165 PF02836 Glyco_hydro_2_C: Glyc 42.3 89 0.0019 23.9 5.6 67 115-181 13-81 (298)
166 PF02100 ODC_AZ: Ornithine dec 41.6 72 0.0016 20.5 4.2 53 125-178 31-87 (108)
167 cd08342 HPPD_N_like N-terminal 41.5 37 0.0008 22.3 3.1 26 153-179 4-30 (136)
168 COG1212 KdsB CMP-2-keto-3-deox 41.5 86 0.0019 23.3 4.9 47 134-182 27-73 (247)
169 PLN02831 Bifunctional GTP cycl 41.1 50 0.0011 27.2 4.2 34 146-181 377-410 (450)
170 PF14696 Glyoxalase_5: Hydroxy 40.9 18 0.00038 24.5 1.4 32 149-181 9-40 (139)
171 PF03376 Adeno_E3B: Adenovirus 40.8 13 0.00028 21.2 0.6 14 124-137 52-65 (67)
172 PF02388 FemAB: FemAB family; 39.9 1.8E+02 0.004 23.6 7.2 54 127-180 74-142 (406)
173 PRK09311 bifunctional 3,4-dihy 39.0 71 0.0015 26.0 4.7 35 145-181 342-376 (402)
174 PRK08815 GTP cyclohydrolase; P 37.7 62 0.0013 26.0 4.1 46 127-181 297-342 (375)
175 KOG1472 Histone acetyltransfer 36.2 25 0.00054 30.6 1.8 74 90-178 431-505 (720)
176 PRK14837 undecaprenyl pyrophos 35.7 64 0.0014 23.9 3.7 35 125-159 26-60 (230)
177 TIGR00055 uppS undecaprenyl di 35.6 64 0.0014 23.9 3.6 34 126-159 20-53 (226)
178 PRK10150 beta-D-glucuronidase; 35.4 1.7E+02 0.0038 25.1 6.8 69 113-181 288-358 (604)
179 cd08344 MhqB_like_N N-terminal 35.4 31 0.00066 21.7 1.9 28 151-179 4-31 (112)
180 PRK14831 undecaprenyl pyrophos 35.3 55 0.0012 24.6 3.3 37 126-162 41-78 (249)
181 cd07267 THT_Oxygenase_N N-term 34.5 32 0.0007 21.6 1.9 27 152-179 6-32 (113)
182 COG3607 Predicted lactoylgluta 34.5 21 0.00046 23.6 0.9 20 160-179 13-32 (133)
183 cd08346 PcpA_N_like N-terminal 34.3 49 0.0011 20.8 2.8 28 151-179 3-31 (126)
184 PRK14019 bifunctional 3,4-dihy 33.3 66 0.0014 25.8 3.7 33 144-179 330-362 (367)
185 PRK14829 undecaprenyl pyrophos 32.9 66 0.0014 24.1 3.4 37 126-162 35-72 (243)
186 PF12681 Glyoxalase_2: Glyoxal 32.1 40 0.00087 20.7 2.0 18 162-179 7-25 (108)
187 PTZ00129 40S ribosomal protein 32.1 1.7E+02 0.0037 20.1 6.4 47 134-180 74-131 (149)
188 PRK12485 bifunctional 3,4-dihy 31.9 74 0.0016 25.5 3.7 35 143-180 332-366 (369)
189 PF01255 Prenyltransf: Putativ 31.7 76 0.0017 23.3 3.6 37 126-162 15-52 (223)
190 PRK14832 undecaprenyl pyrophos 31.3 76 0.0016 24.0 3.5 34 126-159 39-72 (253)
191 cd00475 CIS_IPPS Cis (Z)-Isopr 31.0 82 0.0018 23.2 3.6 34 126-159 21-54 (221)
192 PRK03681 hypA hydrogenase nick 30.9 73 0.0016 20.6 3.0 24 131-154 4-27 (114)
193 PF10566 Glyco_hydro_97: Glyco 30.2 90 0.0019 23.9 3.8 40 136-176 73-123 (273)
194 PF02388 FemAB: FemAB family; 29.8 3.1E+02 0.0067 22.3 8.5 40 117-157 318-357 (406)
195 PRK14841 undecaprenyl pyrophos 29.8 90 0.0019 23.2 3.6 37 126-162 24-61 (233)
196 PRK10240 undecaprenyl pyrophos 29.1 85 0.0018 23.3 3.4 34 126-159 14-47 (229)
197 PRK14842 undecaprenyl pyrophos 29.0 97 0.0021 23.2 3.7 34 126-159 29-62 (241)
198 PTZ00349 dehydrodolichyl dipho 27.8 94 0.002 24.4 3.6 34 126-159 40-73 (322)
199 cd00641 GTP_cyclohydro2 GTP cy 27.7 1.4E+02 0.003 21.4 4.3 47 125-180 123-169 (193)
200 cd07043 STAS_anti-anti-sigma_f 27.6 1.4E+02 0.0031 17.8 4.2 41 133-176 54-94 (99)
201 TIGR03645 glyox_marine lactoyl 27.5 49 0.0011 22.7 1.9 28 149-177 4-32 (162)
202 PRK14840 undecaprenyl pyrophos 27.5 99 0.0021 23.3 3.6 34 126-159 43-76 (250)
203 PRK14827 undecaprenyl pyrophos 27.5 84 0.0018 24.4 3.2 37 126-162 88-125 (296)
204 cd07253 Glo_EDI_BRP_like_2 Thi 27.3 72 0.0016 20.0 2.6 30 149-179 3-33 (125)
205 cd02540 GT2_GlmU_N_bac N-termi 26.8 1.2E+02 0.0026 21.8 4.0 43 134-176 25-67 (229)
206 cd08362 BphC5-RrK37_N_like N-t 26.7 44 0.00095 21.0 1.5 31 150-181 4-35 (120)
207 PRK14834 undecaprenyl pyrophos 26.6 1.2E+02 0.0026 22.9 3.8 34 126-159 35-68 (249)
208 PRK14833 undecaprenyl pyrophos 26.4 1E+02 0.0023 22.9 3.5 34 126-159 25-58 (233)
209 cd08352 Glo_EDI_BRP_like_1 Thi 26.2 69 0.0015 20.0 2.4 29 149-178 3-32 (125)
210 PRK14839 undecaprenyl pyrophos 26.0 1.1E+02 0.0024 22.9 3.5 34 126-159 30-63 (239)
211 PF12804 NTP_transf_3: MobA-li 25.9 75 0.0016 21.4 2.6 43 134-178 23-65 (160)
212 cd04182 GT_2_like_f GT_2_like_ 25.6 96 0.0021 21.3 3.2 41 134-174 25-65 (186)
213 PRK07198 hypothetical protein; 25.5 1.2E+02 0.0027 24.5 3.9 47 126-181 329-376 (418)
214 TIGR00100 hypA hydrogenase nic 25.2 1E+02 0.0023 19.9 3.0 23 131-153 4-26 (115)
215 PRK00762 hypA hydrogenase nick 25.0 1.1E+02 0.0023 20.2 3.1 24 131-154 4-27 (124)
216 PF00903 Glyoxalase: Glyoxalas 24.9 47 0.001 20.9 1.4 28 152-180 4-32 (128)
217 cd07252 BphC1-RGP6_N_like N-te 24.8 63 0.0014 20.5 2.0 27 151-178 4-31 (120)
218 PRK05031 tRNA (uracil-5-)-meth 24.8 1.5E+02 0.0032 23.7 4.4 59 119-185 289-348 (362)
219 TIGR01417 PTS_I_fam phosphoeno 24.8 1.5E+02 0.0033 25.4 4.6 44 136-179 482-525 (565)
220 cd06844 STAS Sulphate Transpor 24.7 1.8E+02 0.0038 17.9 4.0 39 134-175 56-94 (100)
221 TIGR00377 ant_ant_sig anti-ant 24.6 1.5E+02 0.0033 18.3 3.7 40 134-176 60-99 (108)
222 COG0623 FabI Enoyl-[acyl-carri 24.5 1.5E+02 0.0032 22.3 3.9 42 118-159 145-187 (259)
223 PF12652 CotJB: CotJB protein; 24.1 29 0.00062 20.9 0.2 19 153-171 20-38 (78)
224 PRK10291 glyoxalase I; Provisi 24.1 66 0.0014 20.7 2.0 18 161-178 7-25 (129)
225 cd07238 Glo_EDI_BRP_like_5 Thi 24.0 57 0.0012 20.3 1.6 18 160-177 10-28 (112)
226 cd07240 ED_TypeI_classII_N N-t 23.9 99 0.0021 19.1 2.8 21 160-180 12-33 (117)
227 PRK09314 bifunctional 3,4-dihy 23.8 1.4E+02 0.003 23.7 3.9 12 166-177 302-313 (339)
228 PRK12380 hydrogenase nickel in 23.8 1.2E+02 0.0025 19.7 3.0 23 131-153 4-26 (113)
229 PF02268 TFIIA_gamma_N: Transc 23.5 1.3E+02 0.0027 16.3 2.6 22 127-148 5-26 (49)
230 cd07265 2_3_CTD_N N-terminal d 23.5 69 0.0015 20.3 2.0 28 151-179 6-34 (122)
231 PRK14835 undecaprenyl pyrophos 23.4 1.3E+02 0.0028 23.1 3.6 36 126-161 62-98 (275)
232 PF01740 STAS: STAS domain; I 23.3 1.3E+02 0.0027 19.1 3.2 39 134-175 65-103 (117)
233 cd07042 STAS_SulP_like_sulfate 23.2 1.9E+02 0.004 17.6 4.2 41 134-177 58-98 (107)
234 COG0346 GloA Lactoylglutathion 23.2 1E+02 0.0022 19.1 2.8 28 152-180 5-33 (138)
235 COG1658 Small primase-like pro 23.0 62 0.0013 21.5 1.6 23 121-143 59-81 (127)
236 PRK14838 undecaprenyl pyrophos 22.7 1.4E+02 0.0029 22.5 3.5 34 126-159 31-64 (242)
237 TIGR02886 spore_II_AA anti-sig 22.6 2E+02 0.0043 17.7 4.7 40 134-176 56-95 (106)
238 cd08349 BLMA_like Bleomycin bi 22.5 67 0.0015 19.7 1.8 18 162-179 10-28 (112)
239 PRK07758 hypothetical protein; 22.4 94 0.002 19.5 2.2 22 130-151 72-93 (95)
240 PRK14828 undecaprenyl pyrophos 22.3 1.5E+02 0.0033 22.4 3.7 36 126-161 47-84 (256)
241 COG0375 HybF Zn finger protein 22.1 1.6E+02 0.0036 19.2 3.4 36 132-167 5-46 (115)
242 PF04260 DUF436: Protein of un 22.1 2.3E+02 0.005 19.9 4.2 50 133-182 44-96 (172)
243 cd08347 PcpA_C_like C-terminal 22.0 89 0.0019 21.3 2.4 29 150-179 2-31 (157)
244 PF02896 PEP-utilizers_C: PEP- 22.0 1.1E+02 0.0024 23.7 3.0 47 134-180 233-279 (293)
245 PRK14968 putative methyltransf 21.9 1E+02 0.0022 21.3 2.8 45 135-179 128-172 (188)
246 cd07264 Glo_EDI_BRP_like_15 Th 21.7 1.1E+02 0.0024 19.2 2.7 24 153-177 4-28 (125)
247 PF09924 DUF2156: Uncharacteri 21.6 1.8E+02 0.004 22.2 4.2 43 133-178 56-98 (299)
248 TIGR00068 glyox_I lactoylgluta 21.5 63 0.0014 21.6 1.5 29 149-178 17-46 (150)
249 cd07255 Glo_EDI_BRP_like_12 Th 21.1 87 0.0019 19.8 2.1 27 152-179 5-32 (125)
250 PLN02300 lactoylglutathione ly 21.0 62 0.0013 24.6 1.5 29 149-178 24-53 (286)
251 PF07395 Mig-14: Mig-14; Inte 21.0 3.9E+02 0.0084 20.4 5.6 31 121-151 205-239 (264)
252 COG3543 Uncharacterized conser 20.9 1.7E+02 0.0036 19.6 3.2 41 121-161 9-50 (135)
253 cd07266 HPCD_N_class_II N-term 20.6 77 0.0017 20.0 1.8 29 150-179 5-34 (121)
254 TIGR00151 ispF 2C-methyl-D-ery 20.6 2.5E+02 0.0054 19.5 4.2 32 124-156 63-94 (155)
255 PRK14830 undecaprenyl pyrophos 20.4 1.8E+02 0.0038 22.0 3.7 33 129-161 46-79 (251)
256 cd07263 Glo_EDI_BRP_like_16 Th 20.4 79 0.0017 19.5 1.8 19 161-179 9-28 (119)
257 cd07249 MMCE Methylmalonyl-CoA 20.3 96 0.0021 19.5 2.2 27 152-179 3-30 (128)
258 cd01027 TOPRIM_RNase_M5_like T 20.2 70 0.0015 19.2 1.4 23 121-143 49-71 (81)
259 PLN02979 glycolate oxidase 20.0 2E+02 0.0044 23.1 4.2 50 117-174 123-172 (366)
No 1
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.87 E-value=2.3e-21 Score=132.42 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=100.5
Q ss_pred CCeeEEecccccHHHHHHhhhhcCCCCCCChH--HHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccc
Q 028511 22 PEIVVREARIEDIWEVAETHCSCFFPNYTFPL--DLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTV 99 (208)
Q Consensus 22 ~~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~ 99 (208)
+++.||+++.+|++.+.+++.......+.... ..+......+...++++..+ +++||++.+...
T Consensus 2 ~~~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~--------------~~ivG~~~~~~~ 67 (144)
T PRK10146 2 PACELRPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLD--------------GEVVGMIGLHLQ 67 (144)
T ss_pred CccEEeeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEEC--------------CEEEEEEEEEec
Confidence 46789999999999999998865543333211 11111112333455666655 899999988542
Q ss_pred cCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEe
Q 028511 100 ADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
... ......++|..++|+|+|||+|+|+.|++++++.+++.|+..+.+.+...|..|++||+++||+..+
T Consensus 68 ~~~--------~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~ 137 (144)
T PRK10146 68 FHL--------HHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSH 137 (144)
T ss_pred ccc--------cccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhh
Confidence 210 0111245788999999999999999999999999999999999999999999999999999998775
No 2
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.86 E-value=1.9e-20 Score=130.41 Aligned_cols=146 Identities=22% Similarity=0.274 Sum_probs=105.0
Q ss_pred CCeeEEecccccHHHHHHhhhhc--CC----CCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEE
Q 028511 22 PEIVVREARIEDIWEVAETHCSC--FF----PNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILT 95 (208)
Q Consensus 22 ~~i~ir~~~~~D~~~i~~l~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~ 95 (208)
..+.||+++.+|++.+.++.... +. ........+...+........+++..+ |++||++.
T Consensus 2 ~~i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------------~~~vG~~~ 67 (162)
T PRK10140 2 SEIVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACID--------------GDVVGHLT 67 (162)
T ss_pred CccEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEEC--------------CEEEEEEE
Confidence 45899999999999999998743 11 111122223233322223344555444 89999998
Q ss_pred eccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHh-cCCceEEEEeecCChhhHhhhhhCCCe
Q 028511 96 VDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARG-WGCRSIALHCDFNNLGATKLYKGQGFK 174 (208)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~-~g~~~i~l~~~~~n~~a~~~y~k~GF~ 174 (208)
+..... ......+.+ +++|+|+|||+|+|+.|++.+++++++ .|...+.+.+...|.+|++||+|+||+
T Consensus 68 ~~~~~~---------~~~~~~~~~-~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~ 137 (162)
T PRK10140 68 IDVQQR---------PRRSHVADF-GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFE 137 (162)
T ss_pred Eecccc---------cccceEEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCE
Confidence 864211 001123444 699999999999999999999999998 599999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCC
Q 028511 175 CVKVPEGANWPQPKNSP 191 (208)
Q Consensus 175 ~~~~~~~~~~~~~~~~~ 191 (208)
..+..+.+.+..+.+.+
T Consensus 138 ~~g~~~~~~~~~~~~~d 154 (162)
T PRK10140 138 IEGTGKKYALRNGEYVD 154 (162)
T ss_pred EEeecccceeeCCeEEE
Confidence 99998777655554433
No 3
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.86 E-value=8e-21 Score=142.22 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=117.5
Q ss_pred CCCCeeEEecccccHHHHHHhhhhcCCCCCCCh---HHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEe
Q 028511 20 XSPEIVVREARIEDIWEVAETHCSCFFPNYTFP---LDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTV 96 (208)
Q Consensus 20 ~~~~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~ 96 (208)
.+..+.||+++++|++++.+++..++.. ++.+ .++...... ....++++..+ |++||++.+
T Consensus 112 ~~~~~~IR~a~~~D~~~l~~L~~~v~~~-~~~~~~~~~~l~~~~~-~~~~~~v~~~~--------------g~iVG~~~~ 175 (266)
T TIGR03827 112 LPEGFTLRIATEDDADAMAALYRKVFPT-YPFPIHDPAYLLETMK-SNVVYFGVEDG--------------GKIIALASA 175 (266)
T ss_pred CCCceEEEECCHHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhc-CCcEEEEEEEC--------------CEEEEEEEE
Confidence 4567999999999999999999987642 2211 122222222 33445556555 899999886
Q ss_pred ccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEE
Q 028511 97 DTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCV 176 (208)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~ 176 (208)
.... ....++|..++|+|+|||+|+|++|++++++++++.|+..+.+.+...|.++.++|+|+||+..
T Consensus 176 ~~~~------------~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~ 243 (266)
T TIGR03827 176 EMDP------------ENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYG 243 (266)
T ss_pred ecCC------------CCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccc
Confidence 3211 1235889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCchhhhhhhhc
Q 028511 177 KVPEGANWPQPKNSPDVKFKFMMKLL 202 (208)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~m~k~l 202 (208)
|+.++.....+.+.+ +.+|.|.|
T Consensus 244 G~l~n~~~i~G~~~d---~~i~~k~l 266 (266)
T TIGR03827 244 GTLVNNTNISGGFES---MNIWYKQL 266 (266)
T ss_pred cEEeecceecCCccc---ceeeeecC
Confidence 999888776666544 56676654
No 4
>PRK03624 putative acetyltransferase; Provisional
Probab=99.85 E-value=5.5e-20 Score=124.80 Aligned_cols=129 Identities=21% Similarity=0.265 Sum_probs=97.7
Q ss_pred CeeEEecccccHHHHHHhhhhcCC-CCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccC
Q 028511 23 EIVVREARIEDIWEVAETHCSCFF-PNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVAD 101 (208)
Q Consensus 23 ~i~ir~~~~~D~~~i~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~ 101 (208)
.+.||+++++|++.+.+++..... ..+.................++++..+ +++||++.+....
T Consensus 2 ~~~ir~~~~~d~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------------~~~vG~~~~~~~~- 66 (140)
T PRK03624 2 AMEIRVFRQADFEAVIALWERCDLTRPWNDPEMDIERKLNHDPSLFLVAEVG--------------GEVVGTVMGGYDG- 66 (140)
T ss_pred ceEEEEcccccHHHHHHHHHhcCCCcchhhHHHHHHHHhcCCCceEEEEEcC--------------CcEEEEEEeeccC-
Confidence 578999999999999999887621 112111111222222333455555544 8999998864311
Q ss_pred CCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 102 FLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 102 ~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
....+..++|+|+|||+|+|+.|++.+++.+++.|++.+.+.+.++|+.+.+||+|+||+..++.
T Consensus 67 -------------~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~ 131 (140)
T PRK03624 67 -------------HRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDRI 131 (140)
T ss_pred -------------CCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccEE
Confidence 23577789999999999999999999999999999999999999999999999999999987653
No 5
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.85 E-value=5.2e-20 Score=126.10 Aligned_cols=146 Identities=15% Similarity=0.127 Sum_probs=105.7
Q ss_pred CeeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCC
Q 028511 23 EIVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADF 102 (208)
Q Consensus 23 ~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~ 102 (208)
+++||+++++|++.+.++........+. ....... .......+....+ +++||++.+....
T Consensus 1 ~~~iR~~~~~D~~~l~~l~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~--------------~~~vG~~~~~~~~-- 61 (146)
T PRK09491 1 MNTISSLTPADLPAAYHIEQRAHAFPWS--EKTFASN-QGERYLNLKLTVN--------------GQMAAFAITQVVL-- 61 (146)
T ss_pred CcchhcCChhhhHHHHHHHHhcCCCCCC--HHHHHHH-HhcCceEEEEEEC--------------CeEEEEEEEEeec--
Confidence 3679999999999999997765433332 2222111 1111122223333 8999998875422
Q ss_pred CCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCCC
Q 028511 103 LPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEGA 182 (208)
Q Consensus 103 ~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~ 182 (208)
+...+..++|+|+|||+|+|+.+++++++.+++.|...+.+.+...|.++.+||+|+||+..+..+.+
T Consensus 62 ------------~~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~ 129 (146)
T PRK09491 62 ------------DEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTIRRNY 129 (146)
T ss_pred ------------CceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeeeeecc
Confidence 13567889999999999999999999999999999999999999999999999999999999887666
Q ss_pred CCCCCCCCCCchhhhhhhhc
Q 028511 183 NWPQPKNSPDVKFKFMMKLL 202 (208)
Q Consensus 183 ~~~~~~~~~~~~~~~m~k~l 202 (208)
.+....+. +.+.|.+.|
T Consensus 130 ~~~~~~~~---d~~~~~~~~ 146 (146)
T PRK09491 130 YPTADGRE---DAIIMALPL 146 (146)
T ss_pred ccCCCCce---eEEEEeccC
Confidence 43322232 356666653
No 6
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=1.6e-19 Score=123.35 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=119.4
Q ss_pred CeeEEecccccHHHHHHhhhhcCCC------CCCChHHHH-HhhhcCCC--ceEEEEeecCcccccCCccccCCCcEEEE
Q 028511 23 EIVVREARIEDIWEVAETHCSCFFP------NYTFPLDLM-LRVDSRMD--ETFFLGSEDFKVGGLDGKFSLHRGYVAGI 93 (208)
Q Consensus 23 ~i~ir~~~~~D~~~i~~l~~~~~~~------~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~ivG~ 93 (208)
++.||+++.+|++.|.++++..... ..+.+.+.. ........ ..++++..+ +|+++|+
T Consensus 1 ~~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~-------------~g~v~G~ 67 (169)
T COG1247 1 EMEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEE-------------DGKVLGY 67 (169)
T ss_pred CcEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcC-------------CCeEEEE
Confidence 3679999999999999999865432 222222222 22222222 244555443 3899999
Q ss_pred EEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCC
Q 028511 94 LTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGF 173 (208)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF 173 (208)
+.+.+...+.. - +...-.+++|+|+.||+|+|++|++.+++.++++|+..+...+..+|.+++++++++||
T Consensus 68 a~~~~fr~r~a--------y-~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF 138 (169)
T COG1247 68 ASAGPFRERPA--------Y-RHTVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGF 138 (169)
T ss_pred EEeeeccCccc--------c-ceEEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCC
Confidence 99876443211 1 22344499999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCCCCCCCCCCchhhhhhhhccCC
Q 028511 174 KCVKVPEGANWPQPKNSPDVKFKFMMKLLKAP 205 (208)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~m~k~l~~~ 205 (208)
+..|..+...++++.+.+ ..+|.+.|...
T Consensus 139 ~~~G~~~~vg~k~g~wld---~~~~~~~l~~~ 167 (169)
T COG1247 139 EEVGTFPEVGDKFGRWLD---LVLMQLLLEEG 167 (169)
T ss_pred EEeccccccccccceEEe---eeeeehhhccc
Confidence 999999988777777765 68888888654
No 7
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.83 E-value=1.2e-19 Score=125.54 Aligned_cols=131 Identities=20% Similarity=0.223 Sum_probs=96.2
Q ss_pred EEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCCCC
Q 028511 26 VREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFLPR 105 (208)
Q Consensus 26 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~~ 105 (208)
||+++.+|+++|.+|...+..........+.. .........+++..+ ++++||++.......
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~-------------~~~ivG~~~~~~~~~---- 62 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDLNSSYAYLL-LCTDFADTSIVAESE-------------GGEIVGFVSGYLRPD---- 62 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCcccceehhh-hhhhcCCcEEEEEcC-------------CCeEEEEEEEEecCC----
Confidence 68999999999999998874332221111111 112222334444422 379999987533111
Q ss_pred CCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCC
Q 028511 106 KGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEG 181 (208)
Q Consensus 106 ~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~ 181 (208)
.....++..++|+|+|||+|+|++|++.+++++++.+...+.+.|..+|.++++||+|+||+.......
T Consensus 63 -------~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~~~~ 131 (157)
T TIGR02406 63 -------RPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRGVHLIE 131 (157)
T ss_pred -------CCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccCCCeEe
Confidence 124578999999999999999999999999999999999999999999999999999999987654433
No 8
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.83 E-value=3.5e-19 Score=127.25 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=98.3
Q ss_pred CCCeeEEecccccHHHHHHhhhhcCCC-----CCCChHH---HH----Hhhh-cCCCceEEEEeecCcccccCCccccCC
Q 028511 21 SPEIVVREARIEDIWEVAETHCSCFFP-----NYTFPLD---LM----LRVD-SRMDETFFLGSEDFKVGGLDGKFSLHR 87 (208)
Q Consensus 21 ~~~i~ir~~~~~D~~~i~~l~~~~~~~-----~~~~~~~---~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
...+.||+++++|++.+.+++.+.+.. .+..+.. +. .... .......++.... +
T Consensus 41 ~~~~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------------~ 107 (191)
T TIGR02382 41 TSDPGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDA-------------S 107 (191)
T ss_pred CCCCcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEcc-------------C
Confidence 345689999999999999999876431 2222211 11 1111 1111222322221 3
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhh
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKL 167 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~ 167 (208)
|++||++.+..... ..++|..++|+|+|||+|+|++|++++++++++.|+..+.+.|..+|.+|++|
T Consensus 108 g~iiG~i~l~~~~~-------------~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~ 174 (191)
T TIGR02382 108 GDPRGYVTLRELND-------------TDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRL 174 (191)
T ss_pred CeEEEEEEEEecCC-------------CceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHH
Confidence 89999998864211 24688889999999999999999999999999999999999999999999999
Q ss_pred hhhCCCeEEecC
Q 028511 168 YKGQGFKCVKVP 179 (208)
Q Consensus 168 y~k~GF~~~~~~ 179 (208)
|+|+||+..++.
T Consensus 175 Y~klGF~~~~~~ 186 (191)
T TIGR02382 175 YIRSGANIESTA 186 (191)
T ss_pred HHHcCCccccce
Confidence 999999988764
No 9
>PTZ00330 acetyltransferase; Provisional
Probab=99.83 E-value=8.8e-19 Score=120.05 Aligned_cols=135 Identities=20% Similarity=0.259 Sum_probs=93.6
Q ss_pred CCCCeeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhh---cCCC-ceEEEEeecCcccccCCccccCCCcEEEEEE
Q 028511 20 XSPEIVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVD---SRMD-ETFFLGSEDFKVGGLDGKFSLHRGYVAGILT 95 (208)
Q Consensus 20 ~~~~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~ 95 (208)
++.++.||+++++|++++.+++................... .... ...+++.. +|++||++.
T Consensus 3 ~~~~~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~vG~~~ 68 (147)
T PTZ00330 3 MSGSLELRDLEEGDLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSP--------------TQRIVGTAS 68 (147)
T ss_pred CcceEEEEEcccccHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeC--------------CCEEEEEEE
Confidence 44568999999999999999987654332211111111111 1111 12233333 389999998
Q ss_pred eccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeE
Q 028511 96 VDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKC 175 (208)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~ 175 (208)
+....... ......++|..++|+|+|||+|+|++|++++++.+++.|+..+.+.+ |.+|++||+++||+.
T Consensus 69 ~~~~~~~~-------~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~---n~~a~~~y~k~GF~~ 138 (147)
T PTZ00330 69 LFVEPKFT-------RGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDC---TEDMVAFYKKLGFRA 138 (147)
T ss_pred EEeccccc-------cCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEec---ChHHHHHHHHCCCEE
Confidence 75322110 01123578999999999999999999999999999999988886654 679999999999998
Q ss_pred Eec
Q 028511 176 VKV 178 (208)
Q Consensus 176 ~~~ 178 (208)
...
T Consensus 139 ~~~ 141 (147)
T PTZ00330 139 CER 141 (147)
T ss_pred ece
Confidence 763
No 10
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.80 E-value=2e-18 Score=123.71 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=97.7
Q ss_pred CeeEEecccccHHHHHHhhhhcCCC-----CCCChH---HHHHhh-----hcCCCceEEEEeecCcccccCCccccCCCc
Q 028511 23 EIVVREARIEDIWEVAETHCSCFFP-----NYTFPL---DLMLRV-----DSRMDETFFLGSEDFKVGGLDGKFSLHRGY 89 (208)
Q Consensus 23 ~i~ir~~~~~D~~~i~~l~~~~~~~-----~~~~~~---~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (208)
...||+++++|++.+.++....+.. .+..+. .+.... .......++++..+ +|+
T Consensus 46 ~~~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------------~g~ 112 (194)
T PRK10975 46 TTGARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDA-------------SGQ 112 (194)
T ss_pred CCCcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcC-------------CCC
Confidence 4678999999999999998876432 121111 111111 11112234444432 378
Q ss_pred EEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhh
Q 028511 90 VAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYK 169 (208)
Q Consensus 90 ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~ 169 (208)
+||++.+....+ ..++|..++|+|+|||+|+|++|++.+++++++.|++.+.+.+..+|.++++||+
T Consensus 113 ~vG~~~l~~~~~-------------~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye 179 (194)
T PRK10975 113 IQGFVTLRELND-------------TDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI 179 (194)
T ss_pred EEEEEEEEecCC-------------CceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH
Confidence 999998854211 2478888999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEecC
Q 028511 170 GQGFKCVKVP 179 (208)
Q Consensus 170 k~GF~~~~~~ 179 (208)
|+||+..++.
T Consensus 180 k~Gf~~~~~~ 189 (194)
T PRK10975 180 RSGANIESTA 189 (194)
T ss_pred HCCCeEeEEE
Confidence 9999999875
No 11
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.79 E-value=6.4e-18 Score=110.95 Aligned_cols=139 Identities=19% Similarity=0.154 Sum_probs=103.3
Q ss_pred CCCeeEEecccccHHHHHHhhhhc--CCC---CCCChH-HHHHh-hhcCCCceEEEEeecCcccccCCccccCCCcEEEE
Q 028511 21 SPEIVVREARIEDIWEVAETHCSC--FFP---NYTFPL-DLMLR-VDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGI 93 (208)
Q Consensus 21 ~~~i~ir~~~~~D~~~i~~l~~~~--~~~---~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~ 93 (208)
++.+.||.++++|.+.+..|+.+- |.. +..... .+... ..+.+...+.++..+ ..++.++|+
T Consensus 1 m~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie-----------~~~~~~aGf 69 (163)
T KOG3216|consen 1 MDNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIE-----------TSGEVVAGF 69 (163)
T ss_pred CCceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEe-----------cCCCceeEE
Confidence 457899999999999999998753 111 111111 11111 234455556555542 114899999
Q ss_pred EEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCC
Q 028511 94 LTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGF 173 (208)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF 173 (208)
+.....-+ ++.. ....||..++|.|+|||+|+|+.|++.+-+.|.+.|+.++.+.|..-|++|+.||++.|+
T Consensus 70 ~~yf~~ys--tW~~------k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~ga 141 (163)
T KOG3216|consen 70 ALYFNNYS--TWLG------KQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGA 141 (163)
T ss_pred eeeecccc--cccc------cceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCc
Confidence 88865332 1111 246899999999999999999999999999999999999999999999999999999999
Q ss_pred eEEec
Q 028511 174 KCVKV 178 (208)
Q Consensus 174 ~~~~~ 178 (208)
+..+.
T Consensus 142 q~l~~ 146 (163)
T KOG3216|consen 142 QDLKE 146 (163)
T ss_pred cccce
Confidence 98765
No 12
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.79 E-value=5.4e-18 Score=119.70 Aligned_cols=147 Identities=24% Similarity=0.335 Sum_probs=108.8
Q ss_pred CCCeeEEecccccHH--HHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEecc
Q 028511 21 SPEIVVREARIEDIW--EVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDT 98 (208)
Q Consensus 21 ~~~i~ir~~~~~D~~--~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~ 98 (208)
...+.+|+++.+|+. .+..+....+....++....+...........+++..+. ..+. ..++++|++....
T Consensus 9 ~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~-~~~~------~~~~~~G~~~~~~ 81 (177)
T COG0456 9 EDKVTIREAINKDLLDVALAALEARTFDIRLPWSREYFEKDLTQAPELLLVAETGG-LDGL------LDGKVVGFLLVRV 81 (177)
T ss_pred ccceehhhhhhcccchHHHHHHhhhcCCCCCcchHHHHHHHHhhCcceeEEEEecc-cCCC------cccceeEEEEEEE
Confidence 456789999999999 888888887754223344444444455666666666531 0000 0025899988752
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCC-ceEEEEeecCChhhHhhhhhCCCeEEe
Q 028511 99 VADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGC-RSIALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~-~~i~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
....... ...++|..++|+|+|||+|+|++|++++++.+++.+. ..+.+.|..+|.+|+.||+++||+..+
T Consensus 82 ~~~~~~~--------~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~ 153 (177)
T COG0456 82 VDGRPSA--------DHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVK 153 (177)
T ss_pred ecCCccc--------cCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEe
Confidence 2211000 2368999999999999999999999999999999986 899999999999999999999999999
Q ss_pred cCCCC
Q 028511 178 VPEGA 182 (208)
Q Consensus 178 ~~~~~ 182 (208)
+...+
T Consensus 154 ~~~~y 158 (177)
T COG0456 154 IRKNY 158 (177)
T ss_pred eehhh
Confidence 88765
No 13
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.79 E-value=2.2e-18 Score=113.55 Aligned_cols=151 Identities=22% Similarity=0.312 Sum_probs=119.1
Q ss_pred eeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCC
Q 028511 24 IVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFL 103 (208)
Q Consensus 24 i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~ 103 (208)
+.||.++.+|+-.+-.....+.+.++. ..++.....++++..+|+.+. +|+|||++......+
T Consensus 2 m~iR~ar~~DL~~mQ~~Nl~~lpENyq--mkyylyh~lswp~lSyVA~D~-------------~gkiVGYvlAkmee~-- 64 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCNLLNLPENYQ--MKYYLYHGLSWPQLSYVAEDE-------------NGKIVGYVLAKMEED-- 64 (193)
T ss_pred cccccCCHHHHHHhhhcccccCcHHHh--HHHHHHhhcccccceEEEEcC-------------CCcEEEEeeeehhhc--
Confidence 679999999998887665555444433 233333345678888888864 499999998865432
Q ss_pred CCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhc-CCceEEEEeecCChhhHhhhh-hCCCeEEecCCC
Q 028511 104 PRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGW-GCRSIALHCDFNNLGATKLYK-GQGFKCVKVPEG 181 (208)
Q Consensus 104 ~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~n~~a~~~y~-k~GF~~~~~~~~ 181 (208)
+......+.|.+++|...||+.|+|++||.+......+- +...+.|.|..+|-+|+++|+ .+||++.+..+.
T Consensus 65 ------p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~k 138 (193)
T KOG3235|consen 65 ------PDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPK 138 (193)
T ss_pred ------ccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeecccc
Confidence 223345789999999999999999999999988777765 899999999999999999998 999999998766
Q ss_pred CCCCCCCCCCCchhhhhhhhcc
Q 028511 182 ANWPQPKNSPDVKFKFMMKLLK 203 (208)
Q Consensus 182 ~~~~~~~~~~~~~~~~m~k~l~ 203 (208)
+ +.+|.+..-|.|.|+
T Consensus 139 Y------YadGedAyaM~~~L~ 154 (193)
T KOG3235|consen 139 Y------YADGEDAYAMRKDLS 154 (193)
T ss_pred c------ccccHHHHHHHHHHH
Confidence 5 556777899999884
No 14
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.78 E-value=1.2e-17 Score=112.02 Aligned_cols=120 Identities=26% Similarity=0.392 Sum_probs=92.9
Q ss_pred cHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCCCCCCCCCCC
Q 028511 33 DIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFLPRKGPLRQR 112 (208)
Q Consensus 33 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~~~~~~~~~ 112 (208)
|++++.++....|..++.. ..+.... ......++++..+ +++||++.+....
T Consensus 1 d~~~i~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~--------------~~~vg~~~~~~~~------------ 52 (131)
T TIGR01575 1 DLKAVLEIEAAAFAFPWTE-AQFAEEL-ANYHLCYLLARIG--------------GKVVGYAGVQIVL------------ 52 (131)
T ss_pred CHHHHHHHHHhhCCCCCCH-HHHHHHh-cCCCceEEEEecC--------------CeEEEEEEEEecC------------
Confidence 6788889988887664322 1222223 2233344444444 8999999875421
Q ss_pred CCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCCC
Q 028511 113 RTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEGA 182 (208)
Q Consensus 113 ~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~ 182 (208)
....+..++|+|+|||+|+|++|++++++.+++.+...+.+.+.+.|..+++||+++||+..++.+.+
T Consensus 53 --~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~ 120 (131)
T TIGR01575 53 --DEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNY 120 (131)
T ss_pred --CCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCcccccccc
Confidence 24678899999999999999999999999999999999999999999999999999999999987665
No 15
>PHA00673 acetyltransferase domain containing protein
Probab=99.78 E-value=9.8e-18 Score=113.07 Aligned_cols=129 Identities=13% Similarity=0.073 Sum_probs=98.1
Q ss_pred ecccccHHHHHHhhhhcCCC----CCCCh---HHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEecccc
Q 028511 28 EARIEDIWEVAETHCSCFFP----NYTFP---LDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVA 100 (208)
Q Consensus 28 ~~~~~D~~~i~~l~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~ 100 (208)
-++.+|+++|.+|+.+.-.. ....+ ...+..+...+...++++.++ |++||++.+...+
T Consensus 11 ~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~~--------------g~vVG~~~l~~~p 76 (154)
T PHA00673 11 FAELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFRG--------------EELVGFACLLVTP 76 (154)
T ss_pred hccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEEC--------------CEEEEEEEEEEec
Confidence 46899999999998763111 11111 122455656777888888876 8999998886644
Q ss_pred CCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 101 DFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
.. ...+...+.|..++|+|++||+|||++|+++++++++++|+..++++..++. ..+.||.++|++.+.+
T Consensus 77 ~l-------~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~-~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 77 VP-------HFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEG-RLVQLLPAAGYRETNR 146 (154)
T ss_pred CC-------ccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCc-cchHHHHhCCchhhch
Confidence 31 1122346899999999999999999999999999999999999999876643 5699999999998764
No 16
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.78 E-value=1.7e-17 Score=118.93 Aligned_cols=153 Identities=13% Similarity=0.164 Sum_probs=106.0
Q ss_pred CCCCCCCCeeEEecccccHHHHHHhhhh--cCCCCCCC--------hHHH------HHhhhcCCCceEEEEeecCccccc
Q 028511 16 XXXXXSPEIVVREARIEDIWEVAETHCS--CFFPNYTF--------PLDL------MLRVDSRMDETFFLGSEDFKVGGL 79 (208)
Q Consensus 16 ~~~~~~~~i~ir~~~~~D~~~i~~l~~~--~~~~~~~~--------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 79 (208)
+++.....+.||+++++|++.+.+++.. .+...+.. .... ............++....
T Consensus 10 ~~~l~t~rl~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------ 83 (194)
T PRK10809 10 KVRLTTDRLVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDP------ 83 (194)
T ss_pred ceeeccCcEEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEEC------
Confidence 3445567899999999999999998775 22222221 1111 111111222223333221
Q ss_pred CCccccCCCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhc-CCceEEEEee
Q 028511 80 DGKFSLHRGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGW-GCRSIALHCD 158 (208)
Q Consensus 80 ~~~~~~~~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~ 158 (208)
.++++||++.+..... .....+.| +++|.|+|||+|+|+.+++.+++++++. |++++.+.|.
T Consensus 84 ------~~~~~iG~i~l~~~~~----------~~~~~~ei-g~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~ 146 (194)
T PRK10809 84 ------DEKEIIGVANFSNVVR----------GSFHACYL-GYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYM 146 (194)
T ss_pred ------CCCeEEEEEEEEeecC----------CCeeeEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEee
Confidence 1378999999864211 01124566 7899999999999999999999999985 9999999999
Q ss_pred cCChhhHhhhhhCCCeEEecCCCCCCCCCCCCC
Q 028511 159 FNNLGATKLYKGQGFKCVKVPEGANWPQPKNSP 191 (208)
Q Consensus 159 ~~n~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~ 191 (208)
++|.+|+++|+|+||+..++.+......+.+.+
T Consensus 147 ~~N~~S~~l~ek~Gf~~~g~~~~~~~~~g~~~d 179 (194)
T PRK10809 147 PHNKRSGDLLARLGFEKEGYAKDYLLIDGQWRD 179 (194)
T ss_pred CCCHHHHHHHHHCCCcEEeeeccccccCCeEEE
Confidence 999999999999999999988776544444333
No 17
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.77 E-value=3.6e-18 Score=114.17 Aligned_cols=125 Identities=20% Similarity=0.299 Sum_probs=89.5
Q ss_pred eEEecccccHHHHHHhhhhcCCCCCCChH--HHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCC
Q 028511 25 VVREARIEDIWEVAETHCSCFFPNYTFPL--DLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADF 102 (208)
Q Consensus 25 ~ir~~~~~D~~~i~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~ 102 (208)
.||+++++|.+++.++++.+|........ ...... .....++++.++ |++||++.+.+..-
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------------~~ivg~~~~~~~~~- 63 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNL--YGPGRCVVAEDD--------------GKIVGHVGLIPRRL- 63 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHH--HHTTEEEEEEET--------------TEEEEEEEEEEEEE-
T ss_pred CceECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcc--cCcCcEEEEEEC--------------CEEEEEEEEEEEEE-
Confidence 48999999999999999999977655441 111222 123467777776 89999988755321
Q ss_pred CCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEE
Q 028511 103 LPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCV 176 (208)
Q Consensus 103 ~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~ 176 (208)
......-..++|..++|+|+|||+|+|++|++++++.+++.|+..+.+.. ...+||+++||+.+
T Consensus 64 -----~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~-----~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 64 -----SVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP-----SSPPFYRRFGFEYA 127 (127)
T ss_dssp -----EETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE------SSHHHHHHTTEEEE
T ss_pred -----EECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec-----CChhhhhcCCCEEC
Confidence 01111224689999999999999999999999999999999999777755 23699999999863
No 18
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.77 E-value=1.6e-17 Score=116.13 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=90.7
Q ss_pred CCCeeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEe-ecCcccccCCccccCCCcEEEEEEeccc
Q 028511 21 SPEIVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGS-EDFKVGGLDGKFSLHRGYVAGILTVDTV 99 (208)
Q Consensus 21 ~~~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ivG~~~~~~~ 99 (208)
.+++.||+++++|.+.+.++.................... ....++++. .+ ++++|++.+...
T Consensus 3 ~~~i~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~--~~~~~~va~~~~--------------~~iiG~~~~~~~ 66 (169)
T PRK07922 3 AGAITVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYE--AVQEFWVAEHLD--------------GEVVGCGALHVM 66 (169)
T ss_pred CCCceeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHh--hcCcEEEEEecC--------------CcEEEEEEEeec
Confidence 3568999999999999999987643222211111111111 123345555 44 899999887542
Q ss_pred cCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 100 ADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
. .+.+.|..++|+|+|||+|+|++|++++++++++.|++.+.+.+. +.+||+|+||+..+.
T Consensus 67 ~-------------~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~-----~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 67 W-------------EDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF-----EVEFFARHGFVEIDG 127 (169)
T ss_pred C-------------CCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec-----cHHHHHHCCCEECcc
Confidence 1 135789899999999999999999999999999999999987654 378999999999764
No 19
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.77 E-value=2.9e-17 Score=112.95 Aligned_cols=134 Identities=21% Similarity=0.278 Sum_probs=93.2
Q ss_pred CCeeEEecccccHH-HHHHhhhhcCCCCCCChH-HHHHhhh---cC-CCceEEEEeecCcccccCCccccCCCcEEEEEE
Q 028511 22 PEIVVREARIEDIW-EVAETHCSCFFPNYTFPL-DLMLRVD---SR-MDETFFLGSEDFKVGGLDGKFSLHRGYVAGILT 95 (208)
Q Consensus 22 ~~i~ir~~~~~D~~-~i~~l~~~~~~~~~~~~~-~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~ 95 (208)
..+.||+++.+|.+ .+..++....... +.+. .+...+. .. .....+++..+ .++++||++.
T Consensus 5 ~~~~ir~~~~~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ivG~~~ 71 (150)
T PLN02706 5 EKFKVRRLEISDKSKGFLELLQQLTVVG-DVTEEEFEARFQELASLGDDHLICVIEDA------------ASGRIIATGS 71 (150)
T ss_pred CceEEeEhhhcccchHHHHHHHhccCCC-CCCHHHHHHHHHHHHhCCCcEEEEEEEeC------------CCCcEEEEEE
Confidence 45889999999998 5888877643322 2222 2222221 21 22233444431 1278999987
Q ss_pred eccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeE
Q 028511 96 VDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKC 175 (208)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~ 175 (208)
+....... ......++|..++|+|+|||+|+|+.|++.+++++++.|+..+.+.+.++|. +||+|+||+.
T Consensus 72 ~~~~~~~~-------~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~---~~y~k~GF~~ 141 (150)
T PLN02706 72 VFVERKFI-------RNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENK---AFYEKCGYVR 141 (150)
T ss_pred EEEEeecc-------cCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccH---HHHHHCcCEE
Confidence 74211100 1112356788899999999999999999999999999999999999999884 6999999998
Q ss_pred Eec
Q 028511 176 VKV 178 (208)
Q Consensus 176 ~~~ 178 (208)
.+.
T Consensus 142 ~g~ 144 (150)
T PLN02706 142 KEI 144 (150)
T ss_pred ehh
Confidence 873
No 20
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.77 E-value=5.9e-18 Score=104.60 Aligned_cols=80 Identities=29% Similarity=0.491 Sum_probs=71.7
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHh
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATK 166 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~ 166 (208)
+|++||++.+....... .....++|..++|+|+|||+|+|+.|++++++.+++.|+..+.+.+.++|..+++
T Consensus 4 ~~~ivg~~~~~~~~~~~--------~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~ 75 (83)
T PF00583_consen 4 DGQIVGFASLRPPPEPF--------DHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARR 75 (83)
T ss_dssp TTEEEEEEEEEEEETTT--------TTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHH
T ss_pred CCEEEEEEEEEECCCcc--------ccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHH
Confidence 59999999987644311 1146899999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCe
Q 028511 167 LYKGQGFK 174 (208)
Q Consensus 167 ~y~k~GF~ 174 (208)
||+|+||+
T Consensus 76 ~~~k~Gf~ 83 (83)
T PF00583_consen 76 FYEKLGFE 83 (83)
T ss_dssp HHHHTTEE
T ss_pred HHHHcCCC
Confidence 99999996
No 21
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.76 E-value=2.4e-17 Score=109.54 Aligned_cols=134 Identities=25% Similarity=0.293 Sum_probs=98.3
Q ss_pred eeEEecc---cccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEecccc
Q 028511 24 IVVREAR---IEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVA 100 (208)
Q Consensus 24 i~ir~~~---~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~ 100 (208)
..|+..+ +.-++.|.++....+..+++. -........++..++++.++ ++..||.+......
T Consensus 14 ~~i~~~~~~~~~~l~~im~Li~k~lsepyS~--~tyrYf~~~wp~~~~~a~d~-------------~~~~VGai~ck~~~ 78 (165)
T KOG3139|consen 14 EVIRPSLYPAEEYLADIMRLIDKDLSEPYSI--YTYRYFVPNWPCFCFLALDE-------------KGDTVGAIVCKLDT 78 (165)
T ss_pred eeeeeecchHHHHHHHHHHHHhhhcCchhHH--HHHHhcccCCceEEEEEEcC-------------CCceEEEEEEeccc
Confidence 3455543 333445666666555443331 12233334566677777765 12268887775432
Q ss_pred CCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCC
Q 028511 101 DFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPE 180 (208)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~ 180 (208)
. .+...++|..++|+++|||+|||++|++.+++.++.+|+..++|.+...|.+|.++|+++||+..++..
T Consensus 79 ~----------r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~~ 148 (165)
T KOG3139|consen 79 H----------RNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRLF 148 (165)
T ss_pred c----------CCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEeccee
Confidence 2 113579999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 028511 181 GA 182 (208)
Q Consensus 181 ~~ 182 (208)
.+
T Consensus 149 ~Y 150 (165)
T KOG3139|consen 149 RY 150 (165)
T ss_pred EE
Confidence 65
No 22
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.76 E-value=5.1e-17 Score=111.98 Aligned_cols=134 Identities=18% Similarity=0.196 Sum_probs=96.0
Q ss_pred EEecc-cccHHHHHHhhhhc----CCCCCCCh---HHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEec
Q 028511 26 VREAR-IEDIWEVAETHCSC----FFPNYTFP---LDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVD 97 (208)
Q Consensus 26 ir~~~-~~D~~~i~~l~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~ 97 (208)
||+++ .+|++.|.+++++. +....... ..+...+...+....+++..+ |+++|++.+.
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~d--------------g~~~g~~~~~ 66 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDD--------------GEPIGYFEIY 66 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEET--------------TEEEEEEEEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEEC--------------CEEEEEEEEe
Confidence 69999 99999999998755 22222221 122222322455567777776 9999999885
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhc-CCceEEEEeecCChhhHhhhhhCCCeEE
Q 028511 98 TVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGW-GCRSIALHCDFNNLGATKLYKGQGFKCV 176 (208)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~n~~a~~~y~k~GF~~~ 176 (208)
...... ........++.+.++|++||+|+|+.+++.+++.+++. ++..+.+.+..+|.+++++|+|+||+.+
T Consensus 67 ~~~~~~-------~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~ 139 (152)
T PF13523_consen 67 WPDEDY-------DADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKV 139 (152)
T ss_dssp EGGGSS----------TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEE
T ss_pred cccccc-------cCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEe
Confidence 422211 11346788989999999999999999999999999987 8999999999999999999999999999
Q ss_pred ecCC
Q 028511 177 KVPE 180 (208)
Q Consensus 177 ~~~~ 180 (208)
++..
T Consensus 140 g~~~ 143 (152)
T PF13523_consen 140 GEFE 143 (152)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9864
No 23
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.76 E-value=6.8e-18 Score=116.68 Aligned_cols=137 Identities=23% Similarity=0.284 Sum_probs=97.0
Q ss_pred EEecccccHHHHHHhhhhc-----CCCCCC-ChHHHH----HhhhcCCCceEEEEee-cCcccccCCccccCCCcEEEEE
Q 028511 26 VREARIEDIWEVAETHCSC-----FFPNYT-FPLDLM----LRVDSRMDETFFLGSE-DFKVGGLDGKFSLHRGYVAGIL 94 (208)
Q Consensus 26 ir~~~~~D~~~i~~l~~~~-----~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~ivG~~ 94 (208)
||+++++|+++|.+++++. +..... ...... ...........+++.. + |++||++
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------------g~iiG~~ 66 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEED--------------GKIIGYV 66 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECT--------------TEEEEEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcC--------------CcEEEEE
Confidence 7999999999999998742 111111 111111 2221123344454444 5 9999999
Q ss_pred EeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHH-HhcCCceEEEEeecCChhhHhhhhhCCC
Q 028511 95 TVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQA-RGWGCRSIALHCDFNNLGATKLYKGQGF 173 (208)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~-~~~g~~~i~l~~~~~n~~a~~~y~k~GF 173 (208)
.+....+ ....+.+ .++|.|++|++|+|+.|+..+++++ ++.|++.+.+.+...|.++++||+++||
T Consensus 67 ~~~~~~~-----------~~~~~~~-~~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF 134 (155)
T PF13420_consen 67 SLRDIDP-----------YNHTAEL-SIYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGF 134 (155)
T ss_dssp EEEESSS-----------GTTEEEE-EEEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTE
T ss_pred EEEeeec-----------cCCEEEE-eeEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCC
Confidence 8875322 2235566 5888899999999999999999999 7889999999999999999999999999
Q ss_pred eEEecCCCCCCCCCC
Q 028511 174 KCVKVPEGANWPQPK 188 (208)
Q Consensus 174 ~~~~~~~~~~~~~~~ 188 (208)
+..++.+++.+..+.
T Consensus 135 ~~~g~~~~~~~~~~~ 149 (155)
T PF13420_consen 135 EEEGELKDHIFINGK 149 (155)
T ss_dssp EEEEEEEEEEEETTE
T ss_pred EEEEEEecEEEECCe
Confidence 999998776555443
No 24
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.76 E-value=2.9e-17 Score=116.24 Aligned_cols=153 Identities=14% Similarity=0.220 Sum_probs=107.6
Q ss_pred CCCeeEEecccccHHHHHHhhh--hcC---CCCCCC---h-HHHHHhhh------cCCCceEEEEeecCcccccCCcccc
Q 028511 21 SPEIVVREARIEDIWEVAETHC--SCF---FPNYTF---P-LDLMLRVD------SRMDETFFLGSEDFKVGGLDGKFSL 85 (208)
Q Consensus 21 ~~~i~ir~~~~~D~~~i~~l~~--~~~---~~~~~~---~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
.+.+.||+++++|++.+.+++. ..+ ...++. . .+....+. .......+++..+
T Consensus 8 t~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~------------ 75 (179)
T PRK10151 8 SESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKE------------ 75 (179)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEEC------------
Confidence 3568999999999999999974 211 011221 1 11111111 1111223444444
Q ss_pred CCCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhc-CCceEEEEeecCChhh
Q 028511 86 HRGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGW-GCRSIALHCDFNNLGA 164 (208)
Q Consensus 86 ~~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~n~~a 164 (208)
|++||++.+....+ ..+.+.| +++++|+|||+|+|+.+++.+++++++. |++++.+.+..+|.+|
T Consensus 76 --~~~iG~~~l~~~~~-----------~~~~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S 141 (179)
T PRK10151 76 --DELIGVLSFNRIEP-----------LNKTAYI-GYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPAS 141 (179)
T ss_pred --CEEEEEEEEEeecc-----------CCCceEE-EEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHH
Confidence 89999998754221 1235677 6789999999999999999999999875 8999999999999999
Q ss_pred HhhhhhCCCeEEecCCCCCCCCCCCCCCchhhhhhhhc
Q 028511 165 TKLYKGQGFKCVKVPEGANWPQPKNSPDVKFKFMMKLL 202 (208)
Q Consensus 165 ~~~y~k~GF~~~~~~~~~~~~~~~~~~~~~~~~m~k~l 202 (208)
+++|+|+||+..++.+...+..+.+.+ ..+|.+.+
T Consensus 142 ~~v~ek~Gf~~~g~~~~~~~~~g~~~D---~~~~~~~~ 176 (179)
T PRK10151 142 NQVALRNGFTLEGCLKQAEYLNGAYDD---VNLYARII 176 (179)
T ss_pred HHHHHHCCCEEEeEeccceEECCEEEE---EEEEEEee
Confidence 999999999999998877665555433 45665544
No 25
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.76 E-value=5e-17 Score=132.34 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=103.0
Q ss_pred CCCCeeEEec-ccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEecc
Q 028511 20 XSPEIVVREA-RIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDT 98 (208)
Q Consensus 20 ~~~~i~ir~~-~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~ 98 (208)
....+.||++ +++|++.|.+|+.......+... .++... ......++++.++ .+|++||++....
T Consensus 79 ~~~g~~IR~~~~~~D~~~I~~L~~~~~~~p~~~~-~~~~~~-~~~~~~~~vA~~~------------~~g~IVG~~~~~~ 144 (547)
T TIGR03103 79 TPRGFTVRRLRGPADVDAINRLYAARGMVPVRVD-FVLDHR-HSRAITYLVAEDE------------ASGAIIGTVMGVD 144 (547)
T ss_pred CCCCcEEEeCCChhHHHHHHHHHHhcCCCCCCHH-HHHHHh-cCCCceEEEEEEC------------CCCeEEEEEEEEe
Confidence 4456899997 68999999999998654333221 222222 3344556666542 1389999987532
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 99 VADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
....+ . ......+|..++|+|+|||+|+|++|++++++++++.|+..+.+.|..+|.++++||+|+||+.+..
T Consensus 145 ~~~~~------~-d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~ 217 (547)
T TIGR03103 145 HRKAF------N-DPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPV 217 (547)
T ss_pred ccccc------c-CCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeE
Confidence 21110 0 1112468899999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 028511 179 P 179 (208)
Q Consensus 179 ~ 179 (208)
.
T Consensus 218 y 218 (547)
T TIGR03103 218 F 218 (547)
T ss_pred E
Confidence 4
No 26
>PRK10314 putative acyltransferase; Provisional
Probab=99.76 E-value=1.3e-17 Score=114.60 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=99.6
Q ss_pred EecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCCCCC
Q 028511 27 REARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFLPRK 106 (208)
Q Consensus 27 r~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~~~ 106 (208)
..++.+++.++..+..++|......+.......+.......+++..+ +++||++.+....+
T Consensus 10 ~~l~~~~~~~~~~lR~~VF~~eq~~~~~e~D~~d~~~~~~h~~~~~~--------------~~~vg~~r~~~~~~----- 70 (153)
T PRK10314 10 SELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDLTGDNRHILGWKN--------------DELVAYARILKSDD----- 70 (153)
T ss_pred hhCCHHHHHHHHHHHHHHhhhhcCCCccccCCCCCCCCcEEEEEEEC--------------CEEEEEEEEecCCC-----
Confidence 45677888899999889886554444221111111123445555555 89999998865211
Q ss_pred CCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhc-CCceEEEEeecCChhhHhhhhhCCCeEEecCCCCCCC
Q 028511 107 GPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGW-GCRSIALHCDFNNLGATKLYKGQGFKCVKVPEGANWP 185 (208)
Q Consensus 107 ~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~~~~ 185 (208)
....++|..++|+|+|||+|+|++|++++++.+++. +...+.+.+. ..+.+||+|+||+.++.. |
T Consensus 71 ------~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~---~~a~~fY~k~GF~~~g~~----f- 136 (153)
T PRK10314 71 ------DLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQ---AHLQNFYQSFGFIPVTEV----Y- 136 (153)
T ss_pred ------CCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehH---HHHHHHHHHCCCEECCCc----c-
Confidence 112479999999999999999999999999999875 6777877664 468899999999998853 1
Q ss_pred CCCCCCCchhhhhhhhcc
Q 028511 186 QPKNSPDVKFKFMMKLLK 203 (208)
Q Consensus 186 ~~~~~~~~~~~~m~k~l~ 203 (208)
...|.+.+.|.|.+-
T Consensus 137 ---~~~Gi~h~~M~~~~~ 151 (153)
T PRK10314 137 ---EEDGIPHIGMAREVI 151 (153)
T ss_pred ---ccCCCCcHhhhhhhh
Confidence 233556788888763
No 27
>PLN02825 amino-acid N-acetyltransferase
Probab=99.75 E-value=1.1e-17 Score=133.58 Aligned_cols=147 Identities=15% Similarity=0.146 Sum_probs=103.8
Q ss_pred eeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCC
Q 028511 24 IVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFL 103 (208)
Q Consensus 24 i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~ 103 (208)
-.||+++.+|++.|.+|++............. +.+.. ....+++++.+ |++||++.+.+...
T Consensus 368 e~IR~At~eDi~~I~~Li~~lee~g~lv~rs~-e~le~-ei~~f~V~e~D--------------g~IVG~aal~~~~~-- 429 (515)
T PLN02825 368 EGTRMARVEDLAGIRQIIRPLEESGILVRRTD-EELLR-ALDSFVVVERE--------------GSIIACAALFPFFE-- 429 (515)
T ss_pred hhheeCCHHHHHHHHHHHHHHHHcCCCcCCCH-HHHHh-cCCcEEEEEEC--------------CEEEEEEEEEeecC--
Confidence 46999999999999999986543322211111 11111 22356666666 89999998764321
Q ss_pred CCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCCCC
Q 028511 104 PRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEGAN 183 (208)
Q Consensus 104 ~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~~ 183 (208)
...++|..++|+|+|||+|+|++|++++++.++++|++.+.+.+. .+.+||+++||+..+....+.
T Consensus 430 ----------~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt----~a~~fY~k~GF~~~~~~~lp~ 495 (515)
T PLN02825 430 ----------EKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLTT----RTADWFVRRGFSECSIESLPE 495 (515)
T ss_pred ----------CCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeC----cHHHHHHHCCCEEeChhhCCH
Confidence 235889999999999999999999999999999999999998763 578999999999998765543
Q ss_pred CCCCCCCCCchhhhhhhhc
Q 028511 184 WPQPKNSPDVKFKFMMKLL 202 (208)
Q Consensus 184 ~~~~~~~~~~~~~~m~k~l 202 (208)
-+...+...-...++.|.|
T Consensus 496 ~~~~~yn~~r~sk~~~k~l 514 (515)
T PLN02825 496 ARRKRINLSRGSKYYMKKL 514 (515)
T ss_pred HHHhhcCccCCcEEEEEec
Confidence 3333333333344555544
No 28
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.75 E-value=1.4e-17 Score=118.58 Aligned_cols=146 Identities=16% Similarity=0.159 Sum_probs=103.3
Q ss_pred CCCeeEEecccccHHHHHHhhhhcC----CCCCCCh--HH---HHHhhhcCCCceEEEEeecCcccccCCccccCCCcEE
Q 028511 21 SPEIVVREARIEDIWEVAETHCSCF----FPNYTFP--LD---LMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVA 91 (208)
Q Consensus 21 ~~~i~ir~~~~~D~~~i~~l~~~~~----~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv 91 (208)
+..+.||+++++|++.+.++..... ....+.. .+ +............+++..+ |++|
T Consensus 4 ~~~l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------------g~~i 69 (186)
T PRK15130 4 AHSVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECD--------------GEKA 69 (186)
T ss_pred CCeeEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEEC--------------CEEE
Confidence 3568999999999999999866431 1111111 11 1112212233344555444 8999
Q ss_pred EEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHh-cCCceEEEEeecCChhhHhhhhh
Q 028511 92 GILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARG-WGCRSIALHCDFNNLGATKLYKG 170 (208)
Q Consensus 92 G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~-~g~~~i~l~~~~~n~~a~~~y~k 170 (208)
|++.+..... ....+.+ +++|+|+|||+|+|+++++.+++++++ .|..++.+.|...|.+|++||+|
T Consensus 70 G~~~~~~~~~-----------~~~~~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek 137 (186)
T PRK15130 70 GLVELVEINH-----------VHRRAEF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRK 137 (186)
T ss_pred EEEEEEeecC-----------CCCeEEE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHH
Confidence 9998754211 1123555 699999999999999999999999986 49999999999999999999999
Q ss_pred CCCeEEecCCCCCCCCCCCCCC
Q 028511 171 QGFKCVKVPEGANWPQPKNSPD 192 (208)
Q Consensus 171 ~GF~~~~~~~~~~~~~~~~~~~ 192 (208)
+||+..+..+.+....+.+.+.
T Consensus 138 ~GF~~~~~~~~~~~~~g~~~d~ 159 (186)
T PRK15130 138 LGFEVEGELIHEFFINGEYRNT 159 (186)
T ss_pred CCCEEEEEEeheEEECCEEEEE
Confidence 9999999887765444444443
No 29
>PRK10514 putative acetyltransferase; Provisional
Probab=99.74 E-value=9e-17 Score=109.85 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=86.0
Q ss_pred eeEEecccccHHHHHHhhhhcCC--CCC-C--ChHHHHHhhh-cCCCceEEEEeecCcccccCCccccCCCcEEEEEEec
Q 028511 24 IVVREARIEDIWEVAETHCSCFF--PNY-T--FPLDLMLRVD-SRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVD 97 (208)
Q Consensus 24 i~ir~~~~~D~~~i~~l~~~~~~--~~~-~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~ 97 (208)
+.||+++++|++++.+++...+. ..+ . ........+. ......++++..+ ++++||++.+.
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~iG~~~~~ 68 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDE-------------RDQPVGFMLLS 68 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEec-------------CCcEEEEEEEe
Confidence 67999999999999999876431 111 1 1111111111 0112223333321 38999999874
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEe
Q 028511 98 TVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
. ..+..++|+|+|||+|+|++|++++++.+ +.+.+.+...|.++++||+|+||+..+
T Consensus 69 ~------------------~~~~~~~v~p~~rgkGig~~Ll~~~~~~~-----~~i~~~v~~~N~~a~~~yek~Gf~~~~ 125 (145)
T PRK10514 69 G------------------GHMEALFVDPDVRGCGVGRMLVEHALSLH-----PELTTDVNEQNEQAVGFYKKMGFKVTG 125 (145)
T ss_pred c------------------CcEeEEEECHHhccCCHHHHHHHHHHHhc-----cccEEEeecCCHHHHHHHHHCCCEEec
Confidence 2 34668999999999999999999999864 357788999999999999999999998
Q ss_pred cCCC
Q 028511 178 VPEG 181 (208)
Q Consensus 178 ~~~~ 181 (208)
+...
T Consensus 126 ~~~~ 129 (145)
T PRK10514 126 RSEV 129 (145)
T ss_pred cccc
Confidence 7653
No 30
>PRK07757 acetyltransferase; Provisional
Probab=99.73 E-value=1.5e-16 Score=109.69 Aligned_cols=123 Identities=20% Similarity=0.333 Sum_probs=89.1
Q ss_pred CeeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCC
Q 028511 23 EIVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADF 102 (208)
Q Consensus 23 ~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~ 102 (208)
++.||+++++|++.+.++........+..... ...... ....++++..+ |+++|++.+....
T Consensus 1 ~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~~~--------------~~lvG~~~l~~~~-- 62 (152)
T PRK07757 1 MMEIRKARLSDVKAIHALINVYAKKGLMLPRS-LDELYE-NIRDFYVAEEE--------------GEIVGCCALHILW-- 62 (152)
T ss_pred CceEeeCCcccHHHHHHHHHHHHhcCCccCCC-HHHHHh-ccCcEEEEEEC--------------CEEEEEEEEEecc--
Confidence 36899999999999999987643322221111 111111 11234444444 8999999885421
Q ss_pred CCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 103 LPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 103 ~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
.+.++|..++|+|+|||+|+|++|++.+++.+++.|+..+.+.+. +.+||+|+||+..+..
T Consensus 63 -----------~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~-----~~~~Y~k~GF~~~~~~ 123 (152)
T PRK07757 63 -----------EDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY-----QPEFFEKLGFREVDKE 123 (152)
T ss_pred -----------CCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC-----cHHHHHHCCCEEcccc
Confidence 135789999999999999999999999999999999988766543 3689999999998764
No 31
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.73 E-value=7.8e-17 Score=106.06 Aligned_cols=106 Identities=26% Similarity=0.429 Sum_probs=77.3
Q ss_pred cHHHHHHhhhhcCCCCC-CC----------hHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccC
Q 028511 33 DIWEVAETHCSCFFPNY-TF----------PLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVAD 101 (208)
Q Consensus 33 D~~~i~~l~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~ 101 (208)
|+++|.+|+.+++.... .. ..+............++++..+ |++||++.+..
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------------~~ivG~~~~~~--- 63 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEG--------------GEIVGFAWLEP--- 63 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEET--------------TEEEEEEEEET---
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEEC--------------CEEEEEEEEcC---
Confidence 67888888876543321 11 1122223334444677788877 89999999852
Q ss_pred CCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCC
Q 028511 102 FLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGF 173 (208)
Q Consensus 102 ~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF 173 (208)
...|..++|+|+|||+|+|++|++++++.+++ |+..+.+. .|..+.+||+++||
T Consensus 64 --------------~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~---~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 64 --------------DGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVE---ANERARRFYRKLGF 117 (117)
T ss_dssp --------------CEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEE---C-HHHHHHHHHTT-
T ss_pred --------------CCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEE---eCHHHHHHHHhCCC
Confidence 24599999999999999999999999999966 88877776 78899999999998
No 32
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.70 E-value=1.6e-16 Score=109.95 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=99.0
Q ss_pred eEEecccccHHHHHHhhhhcC------CCCCCChH---HHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEE
Q 028511 25 VVREARIEDIWEVAETHCSCF------FPNYTFPL---DLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILT 95 (208)
Q Consensus 25 ~ir~~~~~D~~~i~~l~~~~~------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~ 95 (208)
.+|+++++|++.+.++..... ........ .+.......+...++++..+ |++||++.
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------g~~vG~~~ 67 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQE--------------SRPIGVIS 67 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEEC--------------CEEEEEEE
Confidence 479999999999999876431 11111111 22223323233344555544 89999999
Q ss_pred eccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHh-cCCceEEEEeecCChhhHhhhhhCCCe
Q 028511 96 VDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARG-WGCRSIALHCDFNNLGATKLYKGQGFK 174 (208)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~-~g~~~i~l~~~~~n~~a~~~y~k~GF~ 174 (208)
+..... ..+.+.+ ++++.|.+| +|+|+.+++.+++++++ .++..+.+.|...|.+|++||+|+||+
T Consensus 68 ~~~~~~-----------~~~~~~~-g~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~ 134 (156)
T TIGR03585 68 FTDINL-----------VHKSAFW-GIYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFE 134 (156)
T ss_pred EEecCh-----------hhCeEEE-EEEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCe
Confidence 864221 1134566 456999999 99999999999999986 499999999999999999999999999
Q ss_pred EEecCCCCCCCCCCC
Q 028511 175 CVKVPEGANWPQPKN 189 (208)
Q Consensus 175 ~~~~~~~~~~~~~~~ 189 (208)
..++.+.+.+..+.+
T Consensus 135 ~~g~~~~~~~~~g~~ 149 (156)
T TIGR03585 135 REGVFRQGIFKEGEY 149 (156)
T ss_pred EeeeehhheeECCeE
Confidence 999988775554443
No 33
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.70 E-value=5.6e-16 Score=119.02 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=97.8
Q ss_pred CCCCCeeEEecccccHHHHHHhhhhc--CCCC-CCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEE
Q 028511 19 XXSPEIVVREARIEDIWEVAETHCSC--FFPN-YTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILT 95 (208)
Q Consensus 19 ~~~~~i~ir~~~~~D~~~i~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~ 95 (208)
...+.++||+++++|++.+.+|...+ |... ..++.+........+ ..+++...+.. .++.+||++.
T Consensus 182 ~l~m~~~Ir~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~--~~~~~~~~d~~---------gd~givG~~~ 250 (320)
T TIGR01686 182 NLELSLNISKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKE--EIVTVSMSDRF---------GDSGIIGIFV 250 (320)
T ss_pred hCCCEEEEEECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCC--CEEEEEEEecC---------CCCceEEEEE
Confidence 34567899999999999999999877 4321 122223233322323 23333221110 1368999998
Q ss_pred eccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEee--cCChhhHhhhhhCCC
Q 028511 96 VDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCD--FNNLGATKLYKGQGF 173 (208)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~--~~n~~a~~~y~k~GF 173 (208)
+... .+.++|..++|+|++||+|+|++|++++++.+++.|+..+.+.+. ..|..+++||+++||
T Consensus 251 ~~~~--------------~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF 316 (320)
T TIGR01686 251 FEKK--------------EGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGF 316 (320)
T ss_pred EEec--------------CCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCC
Confidence 7542 136899999999999999999999999999999999999999875 479999999999999
Q ss_pred eEE
Q 028511 174 KCV 176 (208)
Q Consensus 174 ~~~ 176 (208)
+..
T Consensus 317 ~~~ 319 (320)
T TIGR01686 317 EDE 319 (320)
T ss_pred ccC
Confidence 854
No 34
>PRK09831 putative acyltransferase; Provisional
Probab=99.70 E-value=1.4e-16 Score=109.12 Aligned_cols=117 Identities=15% Similarity=0.252 Sum_probs=82.8
Q ss_pred eeEEecccccHHHHHHhhhhcCCCCC--CChHHHHHhh---------hcCCCceEEEEeecCcccccCCccccCCCcEEE
Q 028511 24 IVVREARIEDIWEVAETHCSCFFPNY--TFPLDLMLRV---------DSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAG 92 (208)
Q Consensus 24 i~ir~~~~~D~~~i~~l~~~~~~~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG 92 (208)
+.||+++++|++.+.++....+.... ..+.+..... .......++++..+ |+++|
T Consensus 1 ~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------------~~iiG 66 (147)
T PRK09831 1 IQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVIN--------------AQPVG 66 (147)
T ss_pred CccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHhcCceEEEEEC--------------CEEEE
Confidence 36899999999999999886643211 1111111100 01112345555544 89999
Q ss_pred EEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCC
Q 028511 93 ILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQG 172 (208)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~G 172 (208)
++.+.. .++..++|+|+|||+|+|++|++++++.+.+ +.+ . .|..+++||+|+|
T Consensus 67 ~~~~~~------------------~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v--~-~~~~a~~~Y~k~G 120 (147)
T PRK09831 67 FITCIE------------------HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTV--D-ASITAKPFFERYG 120 (147)
T ss_pred EEEehh------------------ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEe--e-cchhhHHHHHHCC
Confidence 988742 4677899999999999999999999998765 333 3 2468999999999
Q ss_pred CeEEecCC
Q 028511 173 FKCVKVPE 180 (208)
Q Consensus 173 F~~~~~~~ 180 (208)
|+..+..+
T Consensus 121 f~~~g~~~ 128 (147)
T PRK09831 121 FQTVKQQR 128 (147)
T ss_pred CEEeeccc
Confidence 99999865
No 35
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.69 E-value=1.9e-16 Score=126.11 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=91.5
Q ss_pred eeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCC
Q 028511 24 IVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFL 103 (208)
Q Consensus 24 i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~ 103 (208)
+.||+++.+|++++.++++......+..... ...+ ......++++..+ |+++|++.+....+
T Consensus 283 ~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~-~~~l-~~~~~~~~V~~~d--------------g~iVG~~~~~~~~~-- 344 (429)
T TIGR01890 283 ESIRQATIDDIGGIAALIRPLEEQGILVRRS-REYL-EREISEFSIIEHD--------------GNIIGCAALYPYAE-- 344 (429)
T ss_pred hheEECCHHHHHHHHHHHHHHHHcCCchhhh-HHHH-HhhcCcEEEEEEC--------------CEEEEEEEEEecCC--
Confidence 4799999999999999986543333322111 1111 1222345556555 89999998865321
Q ss_pred CCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCC
Q 028511 104 PRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPE 180 (208)
Q Consensus 104 ~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~ 180 (208)
...++|..++|+|+|||+|+|++|+++++++++++|+..+.+. ..| +.+||+++||+.+++..
T Consensus 345 ----------~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~--~~~--a~~fY~k~GF~~~g~~~ 407 (429)
T TIGR01890 345 ----------EDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVL--TTR--TGHWFRERGFQTASVDE 407 (429)
T ss_pred ----------CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEe--ecc--hHHHHHHCCCEECChhh
Confidence 2357899999999999999999999999999999999987653 333 57999999999998753
No 36
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.69 E-value=1.9e-15 Score=115.02 Aligned_cols=137 Identities=17% Similarity=0.163 Sum_probs=96.4
Q ss_pred CCCCeeEEeccc-ccHHHHHHhhhhcCCCCC---CChHHHHHhh-hc--CCCceEEEEeecCcccccCCccccCCCcEEE
Q 028511 20 XSPEIVVREARI-EDIWEVAETHCSCFFPNY---TFPLDLMLRV-DS--RMDETFFLGSEDFKVGGLDGKFSLHRGYVAG 92 (208)
Q Consensus 20 ~~~~i~ir~~~~-~D~~~i~~l~~~~~~~~~---~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG 92 (208)
.+..+.+|+++. .|.+.+.++.+..|.... .+........ .. .....++++..+ .+|++||
T Consensus 146 ~~~g~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------------~~~~~vG 213 (292)
T TIGR03448 146 VPDGVTVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDD------------APGELLG 213 (292)
T ss_pred CCCCeEeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEEC------------CCCcEEE
Confidence 456899999864 588888888777764321 1211211111 11 112334444441 0278999
Q ss_pred EEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCC
Q 028511 93 ILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQG 172 (208)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~G 172 (208)
++.+....+ .....+|..++|+|+|||+|+|+.|++.+++++++.|...+.+.+..+|.++++||+|+|
T Consensus 214 ~~~~~~~~~-----------~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~G 282 (292)
T TIGR03448 214 FHWTKVHPD-----------EPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLG 282 (292)
T ss_pred EEEEEecCC-----------CCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcC
Confidence 975532111 112467777899999999999999999999999999999999999999999999999999
Q ss_pred CeEEecC
Q 028511 173 FKCVKVP 179 (208)
Q Consensus 173 F~~~~~~ 179 (208)
|+..++.
T Consensus 283 F~~~~~~ 289 (292)
T TIGR03448 283 FTVAEVD 289 (292)
T ss_pred CEEcccc
Confidence 9987754
No 37
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.69 E-value=7.7e-16 Score=99.07 Aligned_cols=137 Identities=21% Similarity=0.230 Sum_probs=101.0
Q ss_pred CCCeeEEecccccHHH-HHHhhhhcCCCCCCChHHHHHhhh---cCCCceEEEEeecCcccccCCccccCCCcEEEEEEe
Q 028511 21 SPEIVVREARIEDIWE-VAETHCSCFFPNYTFPLDLMLRVD---SRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTV 96 (208)
Q Consensus 21 ~~~i~ir~~~~~D~~~-i~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~ 96 (208)
+..+.+|++..+|+.. ..+++..--..+.-.+.+|..++. ...+.++++...|. ..+++||.+.+
T Consensus 4 P~~~~lR~L~~~D~~kGf~elL~qLT~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~-----------~s~~vigtatL 72 (150)
T KOG3396|consen 4 PDGFKLRPLEEDDYGKGFIELLKQLTSVGVVTREQFEKRFEAMKKSGDWYYIVVIEDK-----------ESEKVIGTATL 72 (150)
T ss_pred CCceEEeecccccccchHHHHHHHHhhccccCHHHHHHHHHHHHhcCCcEEEEEEEeC-----------CcCeEEEEEEE
Confidence 3458999999999986 666666543344444555554332 33443444444431 13899999888
Q ss_pred ccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEE
Q 028511 97 DTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCV 176 (208)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~ 176 (208)
....-|... -+..+.|..+.|+++|||+++|+.|+..+...++..|+-++.|.|.+.| +.||+|+||...
T Consensus 73 ~IE~KfIh~-------~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~n---v~FYeKcG~s~~ 142 (150)
T KOG3396|consen 73 FIERKFIHG-------CGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKN---VKFYEKCGYSNA 142 (150)
T ss_pred EEehhhhhc-------ccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhh---hhHHHHcCcccc
Confidence 654443322 2346899999999999999999999999999999999999999999977 799999999887
Q ss_pred ec
Q 028511 177 KV 178 (208)
Q Consensus 177 ~~ 178 (208)
+.
T Consensus 143 ~~ 144 (150)
T KOG3396|consen 143 GN 144 (150)
T ss_pred ch
Confidence 63
No 38
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.69 E-value=2.2e-16 Score=126.25 Aligned_cols=124 Identities=19% Similarity=0.272 Sum_probs=90.5
Q ss_pred eeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCC
Q 028511 24 IVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFL 103 (208)
Q Consensus 24 i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~ 103 (208)
+.||+++.+|+++|.+++.......+..... ...+. .....++++.++ ++++|++.+.....
T Consensus 295 ~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~-~~~l~-~~~~~~~va~~d--------------g~iVG~~~~~~~~~-- 356 (441)
T PRK05279 295 EQLRRATIDDVGGILELIRPLEEQGILVRRS-REQLE-REIDKFTVIERD--------------GLIIGCAALYPFPE-- 356 (441)
T ss_pred HHeEeCCHHHHHHHHHHHHHHHHcCCccccC-HHHHh-cccCcEEEEEEC--------------CEEEEEEEEEEcCC--
Confidence 7899999999999999976432222211111 11121 122345566555 89999987754221
Q ss_pred CCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 104 PRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 104 ~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
...++|..++|+|+|||+|+|++|+++++++++++|+..+.+.. ..+++||+++||+..++.
T Consensus 357 ----------~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~----~~a~~fY~k~GF~~~g~~ 418 (441)
T PRK05279 357 ----------EKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT----TRTAHWFLERGFVPVDVD 418 (441)
T ss_pred ----------CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec----chHHHHHHHCcCEECChh
Confidence 13578999999999999999999999999999999999886643 367999999999999874
No 39
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.69 E-value=7.3e-16 Score=127.57 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=92.2
Q ss_pred CCCeeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEecccc
Q 028511 21 SPEIVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVA 100 (208)
Q Consensus 21 ~~~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~ 100 (208)
+..+.||+++++|++.+.++...........+... ..+.. ....++++..+ |++|||+.+....
T Consensus 461 ~~gm~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~-~~l~~-~~~~~~Va~~~--------------g~IVG~~~l~~~~ 524 (614)
T PRK12308 461 TSGVKVRPARLTDIDAIEGMVAYWAGLGENLPRSR-NELVR-DIGSFAVAEHH--------------GEVTGCASLYIYD 524 (614)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHHHhhhcccccCH-HHHhc-ccCcEEEEEEC--------------CEEEEEEEEEEcC
Confidence 44578999999999999999875432211111111 11211 22345666655 8999999875421
Q ss_pred CCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 101 DFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
...++|..++|+|+|||+|+|+.|++++++++++.|++.+.+.+ .+.+||+|+||+.+++.
T Consensus 525 -------------~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~-----~a~~FYek~GF~~~~~~ 585 (614)
T PRK12308 525 -------------SGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLT-----RVPEFFMKQGFSPTSKS 585 (614)
T ss_pred -------------CCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEee-----CcHHHHHHCCCEECCcc
Confidence 13578999999999999999999999999999999999988754 24699999999998864
No 40
>PRK10562 putative acetyltransferase; Provisional
Probab=99.68 E-value=1.2e-15 Score=104.33 Aligned_cols=118 Identities=20% Similarity=0.264 Sum_probs=84.2
Q ss_pred EEecccccHHHHHHhhhhcCCCCCCCh-HHHHHhh----hc--CCCceEEEEeecCcccccCCccccCCCcEEEEEEecc
Q 028511 26 VREARIEDIWEVAETHCSCFFPNYTFP-LDLMLRV----DS--RMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDT 98 (208)
Q Consensus 26 ir~~~~~D~~~i~~l~~~~~~~~~~~~-~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~ 98 (208)
||+++.+|++.+.+++........+.. ...+... .. ......+++..+ |++||++.+..
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------------~~~iG~~~~~~ 67 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLPAAQTWVWEED--------------GKLLGFVSVLE 67 (145)
T ss_pred cccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcCcccEEEEEEC--------------CEEEEEEEEee
Confidence 799999999999999876532111111 1111111 00 122233444444 78999998743
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 99 VADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
...+..++|+|+|||+|+|+.|++++++. +..+.+.+...|..+++||+|+||+.++.
T Consensus 68 -----------------~~~i~~~~v~~~~rg~G~g~~ll~~~~~~-----~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~ 125 (145)
T PRK10562 68 -----------------GRFVGALFVAPKAVRRGIGKALMQHVQQR-----YPHLSLEVYQKNQRAVNFYHAQGFRIVDS 125 (145)
T ss_pred -----------------ccEEEEEEECHHHcCCCHHHHHHHHHHhh-----CCeEEEEEEcCChHHHHHHHHCCCEEccc
Confidence 13577899999999999999999988774 45688889999999999999999999986
Q ss_pred C
Q 028511 179 P 179 (208)
Q Consensus 179 ~ 179 (208)
.
T Consensus 126 ~ 126 (145)
T PRK10562 126 A 126 (145)
T ss_pred c
Confidence 4
No 41
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.67 E-value=1.1e-15 Score=101.63 Aligned_cols=122 Identities=21% Similarity=0.316 Sum_probs=94.3
Q ss_pred eEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCCC
Q 028511 25 VVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFLP 104 (208)
Q Consensus 25 ~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~ 104 (208)
.||.++.+|.+.|.+++......+--.+.+. ..+ ......+.+++.+ |.++|++.+.+..
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~-~~l-e~~i~dF~i~E~~--------------g~viGC~aL~~~~---- 61 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQGILLRRSR-EQL-EEEIDDFTIIERD--------------GKVIGCAALHPVL---- 61 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhccccchhhH-HHH-HHHHhhheeeeeC--------------CcEEEEEeecccC----
Confidence 5899999999999999887543322111111 111 2223456666666 9999999997422
Q ss_pred CCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 105 RKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 105 ~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
..+.+.+..++|+|+|||+|+|.+|++.++..|++.|++.+++.+. .+..||+++||+....
T Consensus 62 --------~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 62 --------EEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred --------ccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec----ccHHHHHHcCCeECcc
Confidence 2357999999999999999999999999999999999999988775 4689999999998865
No 42
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.66 E-value=9.4e-16 Score=101.19 Aligned_cols=154 Identities=16% Similarity=0.197 Sum_probs=117.5
Q ss_pred eeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCC
Q 028511 24 IVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFL 103 (208)
Q Consensus 24 i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~ 103 (208)
.++|+++.+|+-..-.+........++ ..+........++.+++++.. +++|.|++......
T Consensus 2 tt~r~f~~~Dlf~fNninLDpltEt~~--~~Fyl~yl~~~pe~~~~a~~p-------------~~~imgyimgk~Eg--- 63 (173)
T KOG3234|consen 2 TTIRPFTPQDLFKFNNINLDPLTETFP--ISFYLIYLAIWPEDFIVAEAP-------------TGEIMGYIMGKVEG--- 63 (173)
T ss_pred CccccccHHHHHhhccccccccccccc--eehhHHHHHhChHHhEeccCC-------------CCceEEEEeeeccc---
Confidence 468999999988776665544333333 344444445566777777643 37888888774321
Q ss_pred CCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCCCC
Q 028511 104 PRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEGAN 183 (208)
Q Consensus 104 ~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~~ 183 (208)
....-++++..+.|.|+||+.|+|+.||+.+++.....+.-.+.+.|...|.-|+.+|+++||...++...++
T Consensus 64 -------~~~~wh~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi~YY 136 (173)
T KOG3234|consen 64 -------KDTEWHGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVIEYY 136 (173)
T ss_pred -------cCcceeeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceEEEeeeeee
Confidence 1112358899999999999999999999999999999888889999999999999999999999999988875
Q ss_pred CCCCCCCCCchhhhhhhhccCCC
Q 028511 184 WPQPKNSPDVKFKFMMKLLKAPT 206 (208)
Q Consensus 184 ~~~~~~~~~~~~~~m~k~l~~~~ 206 (208)
+. + ++.+..-|+|.|+..+
T Consensus 137 ~~-g---~deda~dMRKalSrD~ 155 (173)
T KOG3234|consen 137 SV-G---PDEDAYDMRKALSRDV 155 (173)
T ss_pred cc-C---CCcchHhhhhhhccCc
Confidence 43 2 4556799999997654
No 43
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.66 E-value=2.5e-15 Score=103.07 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=101.0
Q ss_pred CCeeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhh---cCCCceEEEEeecCcccccCCccccCCCcEEEEEEecc
Q 028511 22 PEIVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVD---SRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDT 98 (208)
Q Consensus 22 ~~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~ 98 (208)
+++.||..++.|++.|.++..++|... ... .....+. .......+++.++ |++||.+.+++
T Consensus 2 ~~~~ir~e~~~d~~~i~~~~~~aF~~~-~e~-~~v~~lR~~~~~~~~LslVA~d~--------------g~vvG~Il~s~ 65 (171)
T COG3153 2 MMMLIRTETPADIPAIEALTREAFGPG-REA-KLVDKLREGGRPDLTLSLVAEDD--------------GEVVGHILFSP 65 (171)
T ss_pred CccEEEecChhhHHHHHHHHHHHhhcc-hHH-HHHHHHHhcCCcccceeEEEeeC--------------CEEEEEEEEeE
Confidence 568999999999999999999998621 111 1222222 2244667778776 99999999876
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 99 VADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
..-- ....+...+.-+.|+|+|||+|||++|++..++.++..|+..+.+.-.+ .+|.++||+....
T Consensus 66 v~~~--------g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp------~YY~rfGF~~~~~ 131 (171)
T COG3153 66 VTVG--------GEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGDP------TYYSRFGFEPAAG 131 (171)
T ss_pred EEec--------CcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCc------ccccccCcEEccc
Confidence 4321 2233567888999999999999999999999999999999988876554 8999999999987
Q ss_pred CCCC
Q 028511 179 PEGA 182 (208)
Q Consensus 179 ~~~~ 182 (208)
....
T Consensus 132 ~~l~ 135 (171)
T COG3153 132 AKLY 135 (171)
T ss_pred cccc
Confidence 6554
No 44
>PRK01346 hypothetical protein; Provisional
Probab=99.66 E-value=4.5e-15 Score=118.07 Aligned_cols=135 Identities=17% Similarity=0.103 Sum_probs=96.2
Q ss_pred CCCCeeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccc
Q 028511 20 XSPEIVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTV 99 (208)
Q Consensus 20 ~~~~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~ 99 (208)
+++.+.||+++++|++++.++...+|....+ ................+++.++ |++||++.+.+.
T Consensus 3 ~~~~~~iR~~~~~D~~~i~~L~~~~f~~~~~-~~~~~~~~~~~~~~~~~va~~~--------------~~lvg~~~~~~~ 67 (411)
T PRK01346 3 RDMAITIRTATEEDWPAWFRAAATGFGDSPS-DEELEAWRALVEPDRTLGAFDG--------------DEVVGTAGAFDL 67 (411)
T ss_pred CCCCceeecCCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHHhcCcCCeEEEEEC--------------CEEEEEEEEecc
Confidence 3467899999999999999999998865432 1111111111223344555554 899999887543
Q ss_pred cCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 100 ADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
....+ ........+|..++|+|+|||+|+|++||+++++.+++.|...+.+.+.. .+||+|+||+.....
T Consensus 68 ~~~~~-----~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~-----~~~Y~r~Gf~~~~~~ 137 (411)
T PRK01346 68 RLTVP-----GGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE-----GGIYGRFGYGPATYS 137 (411)
T ss_pred ccccC-----CCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc-----hhhHhhCCCeeccce
Confidence 21100 01112468999999999999999999999999999999999877776543 479999999988654
No 45
>PHA01807 hypothetical protein
Probab=99.63 E-value=8.8e-15 Score=99.86 Aligned_cols=121 Identities=17% Similarity=0.076 Sum_probs=84.4
Q ss_pred ecccccHHHHHHhhhhcCCC---C--CCChHHHHHhhh---cCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccc
Q 028511 28 EARIEDIWEVAETHCSCFFP---N--YTFPLDLMLRVD---SRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTV 99 (208)
Q Consensus 28 ~~~~~D~~~i~~l~~~~~~~---~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~ 99 (208)
.++.+|+..+..+..+.+.. . |....+...... .......+++..+ |++||++.+...
T Consensus 8 ~~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~d--------------g~lvG~~~l~~~ 73 (153)
T PHA01807 8 HAKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFRD--------------GKLAGIAVLVFE 73 (153)
T ss_pred hhhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEEC--------------CEEEEEEEEEcC
Confidence 46778888888887755422 1 211122111111 2233444556555 899999888543
Q ss_pred cCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhC
Q 028511 100 ADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQ 171 (208)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~ 171 (208)
.. ........+..++|+|+|||+|+|++||+.+++.+++.|+..+.+.+..+|.++++||++.
T Consensus 74 ~~---------~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~~ 136 (153)
T PHA01807 74 DD---------PHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRRV 136 (153)
T ss_pred CC---------cceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHhc
Confidence 21 0011233455589999999999999999999999999999999999999999999999975
No 46
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.63 E-value=1.6e-14 Score=98.26 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=87.8
Q ss_pred CeeEEecccccHHHHHHhhhhc----CC---CCCCChHHHHHhhh---c-CC--CceEEEEeecCcccccCCccccCCCc
Q 028511 23 EIVVREARIEDIWEVAETHCSC----FF---PNYTFPLDLMLRVD---S-RM--DETFFLGSEDFKVGGLDGKFSLHRGY 89 (208)
Q Consensus 23 ~i~ir~~~~~D~~~i~~l~~~~----~~---~~~~~~~~~~~~~~---~-~~--~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (208)
.+.||+++++|++.+.++.+.. +. ..+.........+. . .. ....+++..+ ++++
T Consensus 1 Rl~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------~~~~ 68 (142)
T PF13302_consen 1 RLTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDK------------DDGE 68 (142)
T ss_dssp SEEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEET------------TTTE
T ss_pred CEEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEec------------cCCc
Confidence 3789999999999999998622 11 11111112111111 1 11 1233444432 1368
Q ss_pred EEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHH-hcCCceEEEEeecCChhhHhhh
Q 028511 90 VAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQAR-GWGCRSIALHCDFNNLGATKLY 168 (208)
Q Consensus 90 ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~-~~g~~~i~l~~~~~n~~a~~~y 168 (208)
+||++.+..... ..+.+.| ++.|.|+|||+|+|+.++..++++++ ..|+..+.+.+.++|.+|++++
T Consensus 69 ~iG~i~~~~~~~-----------~~~~~ei-g~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~ 136 (142)
T PF13302_consen 69 IIGFIGLYNIDK-----------NNNWAEI-GYWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLL 136 (142)
T ss_dssp EEEEEEEEEEET-----------TTTEEEE-EEEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHH
T ss_pred eEEEeeeeeccc-----------CCCcccc-ccchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHH
Confidence 999999843211 2357888 69999999999999999999999996 5699999999999999999999
Q ss_pred hhCCCe
Q 028511 169 KGQGFK 174 (208)
Q Consensus 169 ~k~GF~ 174 (208)
+|+||+
T Consensus 137 ~k~GF~ 142 (142)
T PF13302_consen 137 EKLGFE 142 (142)
T ss_dssp HHTT-E
T ss_pred HHcCCC
Confidence 999996
No 47
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.63 E-value=1.2e-14 Score=88.85 Aligned_cols=68 Identities=31% Similarity=0.503 Sum_probs=56.3
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhh
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKL 167 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~ 167 (208)
+++||++.+.... +..+|..++|+|+|||+|+|+.|++++.+.+.. ..+.+.+ ++.+.+|
T Consensus 12 ~~ivG~~~~~~~~--------------~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~---~~~~~~f 71 (79)
T PF13508_consen 12 GEIVGFIRLWPNE--------------DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFT---NPAAIKF 71 (79)
T ss_dssp TEEEEEEEEEETT--------------TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEE---EHHHHHH
T ss_pred CEEEEEEEEEEcC--------------CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEE---cHHHHHH
Confidence 9999999985432 368999999999999999999999999888843 4566665 4589999
Q ss_pred hhhCCCeE
Q 028511 168 YKGQGFKC 175 (208)
Q Consensus 168 y~k~GF~~ 175 (208)
|+++||++
T Consensus 72 Y~~~GF~~ 79 (79)
T PF13508_consen 72 YEKLGFEE 79 (79)
T ss_dssp HHHTTEEE
T ss_pred HHHCcCCC
Confidence 99999985
No 48
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.59 E-value=3.2e-14 Score=108.27 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=86.6
Q ss_pred ecccccHHHHHHhhhhcCCCC--CCChHHHHHhhhcC--CCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCC
Q 028511 28 EARIEDIWEVAETHCSCFFPN--YTFPLDLMLRVDSR--MDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFL 103 (208)
Q Consensus 28 ~~~~~D~~~i~~l~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~ 103 (208)
+++++|+++|.+|...++... .+...+....+... .....+++..+ +++||++.+....+
T Consensus 5 ~l~~~d~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~vG~~~~~~~~~-- 68 (292)
T TIGR03448 5 ALDADLRRDVRELLAAATAVDGVAPVSEQVLRGLREPGAGHTRHLVAVDS--------------DPIVGYANLVPARG-- 68 (292)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHhhccccCCCCceEEEEEEC--------------CEEEEEEEEEcCCC--
Confidence 578999999999988664332 22333333333211 12334555544 89999998754221
Q ss_pred CCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 104 PRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 104 ~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
....|..++|+|+|||+|+|++|++++++.+. ..+.+.+...|..+++||+++||+....
T Consensus 69 -----------~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~ 128 (292)
T TIGR03448 69 -----------TDPAMAELVVHPAHRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAARALASRLGLVPTRE 128 (292)
T ss_pred -----------CcceEEEEEECHhhcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHCCCEEccE
Confidence 12578899999999999999999999998764 4577888889999999999999987754
No 49
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.55 E-value=7.1e-14 Score=86.40 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=54.3
Q ss_pred ceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 116 IAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 116 ~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
.+.|..++|+|+|||+|+|+.++..+.+.+.+.|.. ..+.+..+|.+|+++|+|+||+....
T Consensus 21 ~g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 21 DGEIGGVYTLPEHRRRGLGSALVAALARELLERGKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp TCCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred CcEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 478999999999999999999999999999998877 67889999999999999999998864
No 50
>PRK13688 hypothetical protein; Provisional
Probab=99.50 E-value=3.4e-13 Score=92.57 Aligned_cols=115 Identities=12% Similarity=0.131 Sum_probs=76.1
Q ss_pred EEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCCCC
Q 028511 26 VREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFLPR 105 (208)
Q Consensus 26 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~~ 105 (208)
||++..+|+.++.++...++. ......++++.++ +++||++.+.........
T Consensus 20 ~~~~~~~dl~~l~~l~~~~f~--------------~~~~~~~~~~~~~--------------~~~VG~~~l~~~dg~~~~ 71 (156)
T PRK13688 20 FREFGNQELSMLEELQANIIE--------------NDSESPFYGIYYG--------------DSLVARMSLYKKGGVEEP 71 (156)
T ss_pred HHHhcHHHHHHHHhhhhhEee--------------cCCCCCEEEEEEC--------------CEEEEEEEEEecCCcccc
Confidence 577777888888877666551 1122344555555 788898776332110000
Q ss_pred CCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 106 KGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 106 ~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
........++|..++|+|+|||+|+|++|++.+. +.++. + .+...| .+.+||+|+||+..++.
T Consensus 72 ---~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~----~~~~~-~--~~~~~~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 72 ---YFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAK----SFQLP-I--KTIARN-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred ---cccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHH----HhCCe-E--EEEecc-chHHHHHhCCCEEeEEe
Confidence 0112345689999999999999999999998643 33443 2 334445 57899999999999875
No 51
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.50 E-value=2.9e-13 Score=93.96 Aligned_cols=156 Identities=21% Similarity=0.227 Sum_probs=107.0
Q ss_pred CeeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCC
Q 028511 23 EIVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADF 102 (208)
Q Consensus 23 ~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~ 102 (208)
.+.++..++.++.++..|....|+..+.. .++........-.-+.+. + +..+|.........
T Consensus 16 ~~~l~~it~~nl~~~~~l~~~~fP~~y~~--kfy~~~~~~~~~~~~A~~-~--------------~~~v~a~~~k~~~~- 77 (187)
T KOG3138|consen 16 LIELRLITPNNLKQLKQLNEDIFPISYVD--KFYPDVLSNGDLTQLAYY-N--------------EIAVGAVACKLIKF- 77 (187)
T ss_pred ceeeccCCcchHHHHHHHhccccCcchHH--HHHHHHHhcCCHHHhhhh-c--------------cccccceeeeehhh-
Confidence 48999999999999999999887666543 355555433222222222 2 33333333322111
Q ss_pred CCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcC-CceEEEEeecCChhhHhhhhhCCCeEEecCCC
Q 028511 103 LPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWG-CRSIALHCDFNNLGATKLYKGQGFKCVKVPEG 181 (208)
Q Consensus 103 ~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g-~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~ 181 (208)
... ..........+|..++|.+.||.+|||+.|++.+.+.+.+.+ +..+++.+...|..++.||++.||+.+++...
T Consensus 78 ~~~--~~r~~~~~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~ 155 (187)
T KOG3138|consen 78 VQN--AKRLFGNRVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKN 155 (187)
T ss_pred hhh--hhhhhccceeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeecccc
Confidence 000 000000115899999999999999999999999999999987 88899999999999999999999999999887
Q ss_pred CCCCCCCCCCCchhhhhhhhc
Q 028511 182 ANWPQPKNSPDVKFKFMMKLL 202 (208)
Q Consensus 182 ~~~~~~~~~~~~~~~~m~k~l 202 (208)
++..... .+...|.+.+
T Consensus 156 ~y~~~~~----~~~~~l~~~~ 172 (187)
T KOG3138|consen 156 YYSILGP----PDDSFLRKLL 172 (187)
T ss_pred ccccccC----cchhhhhhhe
Confidence 7433322 2245566655
No 52
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.48 E-value=4.1e-13 Score=101.18 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=63.0
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhh
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKL 167 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~ 167 (208)
+++||++.+.. ..|..++|+|+|||+|+|++|++++++.+++.|+..+.+.+... +.+|
T Consensus 15 ~~iVG~~~l~~------------------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~---~~~f 73 (297)
T cd02169 15 GELIATGSIAG------------------NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPK---NAKF 73 (297)
T ss_pred CEEEEEEEecc------------------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEccc---HHHH
Confidence 89999988742 36889999999999999999999999999999999999988764 4699
Q ss_pred hhhCCCeEEecC
Q 028511 168 YKGQGFKCVKVP 179 (208)
Q Consensus 168 y~k~GF~~~~~~ 179 (208)
|+|+||+..+..
T Consensus 74 Yek~GF~~~~~~ 85 (297)
T cd02169 74 FRGLGFKELANA 85 (297)
T ss_pred HHHCCCEEeccc
Confidence 999999999843
No 53
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.48 E-value=5.1e-13 Score=91.27 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=94.3
Q ss_pred ccHHHHHHhhhhcCC-----CCCCChHH-HHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCCCC
Q 028511 32 EDIWEVAETHCSCFF-----PNYTFPLD-LMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFLPR 105 (208)
Q Consensus 32 ~D~~~i~~l~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~~ 105 (208)
++++.+..|...... ..|.+... ...++. .....++++.++ .+++|||..+....+
T Consensus 54 ~~ldw~f~L~k~nm~~~Y~qs~~Gw~~~~K~~El~-~~~~~Yi~a~~~-------------~~~~vgf~~Frf~vd---- 115 (202)
T KOG2488|consen 54 EDLDWCFSLFKKNMGAMYRQSSWGWDDNSKAKELR-NRKLRYICAWNN-------------KSKLVGFTMFRFTVD---- 115 (202)
T ss_pred HHHHHHHHHHHhhhHHHhhhcccccCchhHHHHHh-hccceEEEEEcC-------------CCceeeEEEEEEEcc----
Confidence 677777777765322 22333322 333443 333455555554 248999998865432
Q ss_pred CCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCCC
Q 028511 106 KGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEGA 182 (208)
Q Consensus 106 ~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~ 182 (208)
.+...+++..+-|.+.|||+|||+.||+.++..+.....+.|.|.|...|.+|+.||.++||......+..
T Consensus 116 ------~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~sp~~ 186 (202)
T KOG2488|consen 116 ------TGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHRLGFVVDEESPCD 186 (202)
T ss_pred ------cCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHHHcCcccCCCCCcc
Confidence 22357899999999999999999999999999999999999999999999999999999999988765443
No 54
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.45 E-value=1.2e-12 Score=94.47 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=68.3
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhh
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKL 167 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~ 167 (208)
|+||+.+...... ...+.|.+++|+|+|||+|+|+.|+..+.+..-..|.. .+|.+..+|+.|.+.
T Consensus 186 ~~iVa~A~t~a~~-------------~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~-~~L~~~~~N~~A~~i 251 (268)
T COG3393 186 GKIVAKAETAAEN-------------PAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKI-PCLFVNSDNPVARRI 251 (268)
T ss_pred CcEEEeeeccccC-------------CcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCe-eEEEEecCCHHHHHH
Confidence 6999888775433 35789999999999999999999999999999998877 567788999999999
Q ss_pred hhhCCCeEEecC
Q 028511 168 YKGQGFKCVKVP 179 (208)
Q Consensus 168 y~k~GF~~~~~~ 179 (208)
|+|.||+..|..
T Consensus 252 Y~riGF~~~g~~ 263 (268)
T COG3393 252 YQRIGFREIGEF 263 (268)
T ss_pred HHHhCCeecceE
Confidence 999999999854
No 55
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=99.40 E-value=2.7e-12 Score=84.02 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=95.3
Q ss_pred EEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhc-CCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCCC
Q 028511 26 VREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDS-RMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFLP 104 (208)
Q Consensus 26 ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~ 104 (208)
+..++...+-++..|..+.|.....-+..-....+. ....+.+....+ |++++++.+.+...
T Consensus 10 ~~~Lt~~ely~LlkLRv~VFVVEQ~CPY~E~Dg~Dl~~~~~Hl~~~~~~--------------g~LvAyaRLl~~~~--- 72 (155)
T COG2153 10 FNDLTVRELYELLKLRVDVFVVEQNCPYPELDGKDLLGDTRHLLGWTPD--------------GELVAYARLLPPGA--- 72 (155)
T ss_pred hhhcCHHHHHHHHHhheeEEEEecCCCCcCcCCcccccccceEEEEcCC--------------CeEEEEEecCCCCC---
Confidence 344556666777777777775433322222222222 122334444434 99999999865322
Q ss_pred CCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcC-CceEEEEeecCChhhHhhhhhCCCeEEecCCCCC
Q 028511 105 RKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWG-CRSIALHCDFNNLGATKLYKGQGFKCVKVPEGAN 183 (208)
Q Consensus 105 ~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g-~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~~ 183 (208)
......|+++.|.|++||+|+|++||..+++.+.+.. -+.+++..-. -...||.++||..++..
T Consensus 73 --------~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQa---hLq~fYa~~GFv~~~e~---- 137 (155)
T COG2153 73 --------EYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQA---HLQDFYASFGFVRVGEE---- 137 (155)
T ss_pred --------CcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHH---HHHHHHHHhCcEEcCch----
Confidence 2234789999999999999999999999999999873 4456665443 56899999999998853
Q ss_pred CCCCCCCCCchhhhhhhhccC
Q 028511 184 WPQPKNSPDVKFKFMMKLLKA 204 (208)
Q Consensus 184 ~~~~~~~~~~~~~~m~k~l~~ 204 (208)
...+|.+.+-|.+.+.+
T Consensus 138 ----yledGIpHv~M~r~~~~ 154 (155)
T COG2153 138 ----YLEDGIPHVGMIREVIQ 154 (155)
T ss_pred ----hhcCCCCchhhhhcccC
Confidence 23456667888776543
No 56
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=99.37 E-value=4.7e-12 Score=81.16 Aligned_cols=144 Identities=20% Similarity=0.186 Sum_probs=102.0
Q ss_pred CCCCeeEEecccccHHHHHHhhhhcCC-CCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEecc
Q 028511 20 XSPEIVVREARIEDIWEVAETHCSCFF-PNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDT 98 (208)
Q Consensus 20 ~~~~i~ir~~~~~D~~~i~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~ 98 (208)
.++++.||.....|..+++.|.++.-. -.|-..........+ .|++..+ |.+.|++....
T Consensus 4 vsmp~~~~D~~apd~aavLaLNNeha~elswLe~erL~~l~~e-----AF~ArR~--------------G~l~afl~tFd 64 (167)
T COG3818 4 VSMPILIRDVRAPDLAAVLALNNEHALELSWLELERLYRLYKE-----AFVARRD--------------GNLAAFLVTFD 64 (167)
T ss_pred cccceehhhhcCCchhhHHhccchhhhhccccCHHHHHHHHHH-----HHHHhhc--------------cchhhheeecc
Confidence 456678898888999999999886532 122222222222211 1466666 44444433322
Q ss_pred ccC--CCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEee--cCChhhHhhhhhCCCe
Q 028511 99 VAD--FLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCD--FNNLGATKLYKGQGFK 174 (208)
Q Consensus 99 ~~~--~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~--~~n~~a~~~y~k~GF~ 174 (208)
... -.+...+...+-++..+|+.+.|....||+|+|++|.+.+.+.++..|+..+++.|. +.|+++..|...+||.
T Consensus 65 ~~a~ydSpNFlWFrErYe~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~ 144 (167)
T COG3818 65 SSARYDSPNFLWFRERYENFFYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFH 144 (167)
T ss_pred ccccCCCCceeehhhhCCceEEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCce
Confidence 111 124444556667789999999999999999999999999999999999999888864 5688999999999999
Q ss_pred EEecCCCC
Q 028511 175 CVKVPEGA 182 (208)
Q Consensus 175 ~~~~~~~~ 182 (208)
++|.....
T Consensus 145 eVG~a~ih 152 (167)
T COG3818 145 EVGQATIH 152 (167)
T ss_pred EccceEEe
Confidence 99976443
No 57
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.4e-11 Score=87.34 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=75.0
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhc-CCceEEEEeecCChhhHh
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGW-GCRSIALHCDFNNLGATK 166 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~n~~a~~ 166 (208)
+++||.+.+..... ....+.+.| ++.+.|+|+|+|+|+.++..+++++++. ++.++.+.|.+.|.+|++
T Consensus 77 ~~~iG~~~~~~~~~---------~~~~~~~~i-g~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~r 146 (187)
T COG1670 77 GELIGVIGLSDIDR---------AANGDLAEI-GYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIR 146 (187)
T ss_pred CeEEEEEEEEEecc---------ccccceEEE-EEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHH
Confidence 68999999875331 112245666 7788999999999999999999999985 999999999999999999
Q ss_pred hhhhCCCeEEecCCCCCCCCC
Q 028511 167 LYKGQGFKCVKVPEGANWPQP 187 (208)
Q Consensus 167 ~y~k~GF~~~~~~~~~~~~~~ 187 (208)
+++|+||+..+..+...+..+
T Consensus 147 v~ek~Gf~~eg~~~~~~~~~g 167 (187)
T COG1670 147 VYEKLGFRLEGELRQHEFIKG 167 (187)
T ss_pred HHHHcCChhhhhhhhceeeCC
Confidence 999999999998777644444
No 58
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.35 E-value=1.1e-11 Score=94.81 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=64.6
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhh
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKL 167 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~ 167 (208)
|++||++.+.. ..|..++|+|+|||+|+|++|++++++.+++.|...+.+.+.+.| .+|
T Consensus 40 ~~lVg~g~l~g------------------~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~---~~f 98 (332)
T TIGR00124 40 EEIIGCGGIAG------------------NVIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEY---AAL 98 (332)
T ss_pred CEEEEEEEEec------------------CEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchH---HHH
Confidence 89999988732 258899999999999999999999999999999999999887655 589
Q ss_pred hhhCCCeEEecCCC
Q 028511 168 YKGQGFKCVKVPEG 181 (208)
Q Consensus 168 y~k~GF~~~~~~~~ 181 (208)
|+++||...+....
T Consensus 99 y~klGF~~i~~~~~ 112 (332)
T TIGR00124 99 FEYCGFKTLAEAKD 112 (332)
T ss_pred HHHcCCEEeeeecc
Confidence 99999999987654
No 59
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.34 E-value=3.6e-11 Score=80.97 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=67.1
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhh
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKL 167 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~ 167 (208)
.++||...++...+ ....+++..+.|+.+.||+|+|+.||+.++.+++..|++.+++.+.. -.+|
T Consensus 66 ~~VigH~rLS~i~n-----------~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~D----Q~~F 130 (225)
T KOG3397|consen 66 DEVLGHSRLSHLPN-----------RDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDD----QCRF 130 (225)
T ss_pred cceeeeeccccCCC-----------CCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeeccc----chhh
Confidence 78999988876433 23578999999999999999999999999999999999999998764 3699
Q ss_pred hhhCCCeEEecCCC
Q 028511 168 YKGQGFKCVKVPEG 181 (208)
Q Consensus 168 y~k~GF~~~~~~~~ 181 (208)
|+++||+...-...
T Consensus 131 Ye~lGYe~c~Pi~~ 144 (225)
T KOG3397|consen 131 YESLGYEKCDPIVH 144 (225)
T ss_pred hhhhcccccCceec
Confidence 99999998765443
No 60
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.29 E-value=2.4e-11 Score=82.10 Aligned_cols=84 Identities=24% Similarity=0.320 Sum_probs=70.8
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHh
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATK 166 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~ 166 (208)
++++||++.++..-+..- ...-++| +..|.|+.||+|+|++|++.+++.|++.|++.+.+.|..+|.+|++
T Consensus 77 d~~ivG~i~lRh~Ln~~l--------l~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrk 147 (174)
T COG3981 77 DGQIVGFINLRHQLNDFL--------LEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRK 147 (174)
T ss_pred CCcEEEEEEeeeecchHH--------HhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhH
Confidence 499999999976432100 0113677 8899999999999999999999999999999999999999999999
Q ss_pred hhhhCCCeEEecC
Q 028511 167 LYKGQGFKCVKVP 179 (208)
Q Consensus 167 ~y~k~GF~~~~~~ 179 (208)
.-+++|=....+.
T Consensus 148 vI~~NGGile~~~ 160 (174)
T COG3981 148 VIEANGGILENEF 160 (174)
T ss_pred HHHhcCCEEeEEE
Confidence 9999998777654
No 61
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=99.19 E-value=2.2e-11 Score=80.45 Aligned_cols=153 Identities=16% Similarity=0.086 Sum_probs=96.2
Q ss_pred CCCCCeeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEecc
Q 028511 19 XXSPEIVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDT 98 (208)
Q Consensus 19 ~~~~~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~ 98 (208)
..+..+.||+..++|..++..|....|+++.....+......-.-++.+....+. ..-..-+..+.+||++..+.
T Consensus 7 ~~p~~~~irp~i~e~~q~~~~Lea~~FPe~erasfeii~~r~i~~pevc~glf~~-----~~h~~~~~~~tLIghIigs~ 81 (190)
T KOG4144|consen 7 LKPEAPRIRPGIPESCQRRHTLEASEFPEDERASFEIIRERFISVPEVCPGLFDE-----IRHFLTLCEGTLIGHIIGSL 81 (190)
T ss_pred CCcccccCCCCChHHHHHHhccccccCChhHHHHHHHHHHHHhcchhhcchhhhh-----HHhhhhhccccceehhhccc
Confidence 3445678999999999999999888886554444333322211111211111100 00000112477888776543
Q ss_pred ccCCC--CCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhc-CCceEEEEeecCChhhHhhhhhCCCeE
Q 028511 99 VADFL--PRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGW-GCRSIALHCDFNNLGATKLYKGQGFKC 175 (208)
Q Consensus 99 ~~~~~--~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~n~~a~~~y~k~GF~~ 175 (208)
.+... ...-..+..++..+.|+.+.|+|+||.+|+|..|+..-++..-++ -.+++.|.+.. +.++||+++||+.
T Consensus 82 ~~~E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~---pLvPFYEr~gFk~ 158 (190)
T KOG4144|consen 82 WDKERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHD---PLVPFYERFGFKA 158 (190)
T ss_pred CcchhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecC---CccchhHhcCcee
Confidence 22211 001112344556699999999999999999999999877776666 34567776765 7899999999999
Q ss_pred EecC
Q 028511 176 VKVP 179 (208)
Q Consensus 176 ~~~~ 179 (208)
++..
T Consensus 159 vgp~ 162 (190)
T KOG4144|consen 159 VGPC 162 (190)
T ss_pred eccc
Confidence 9873
No 62
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=99.18 E-value=1.4e-10 Score=93.61 Aligned_cols=84 Identities=19% Similarity=0.360 Sum_probs=64.9
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEe-----------CccccccChHHHHHHHHHHHHHhcCCceEEE
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAV-----------REKFRRKGIAKRLIAKAEAQARGWGCRSIAL 155 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v-----------~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l 155 (208)
++.++||+.+........ .....+.+.|..+.| +++|||+|+|++||+++++.+++.|+..+.+
T Consensus 422 ~~~l~G~lrlr~~~~~~~-----~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v 496 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAH-----RKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILV 496 (522)
T ss_pred CCeEEEEEEEecCccccc-----ccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEE
Confidence 578999999876432110 011123566766664 4999999999999999999999999999887
Q ss_pred EeecCChhhHhhhhhCCCeEEec
Q 028511 156 HCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 156 ~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
.+ |..+++||+|+||+..+.
T Consensus 497 ~s---~~~A~~FY~klGf~~~g~ 516 (522)
T TIGR01211 497 IS---GIGVREYYRKLGYELDGP 516 (522)
T ss_pred ee---CchHHHHHHHCCCEEEcc
Confidence 43 679999999999998874
No 63
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.12 E-value=3.2e-10 Score=68.87 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=67.3
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHh
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATK 166 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~ 166 (208)
+|.+|..+.... ++++...++.|+|||+|+.+.++....+.+.+.|+. ++..|..+|+.+++
T Consensus 7 eG~PVSW~lmdq-----------------tge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r 68 (89)
T PF08444_consen 7 EGNPVSWSLMDQ-----------------TGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQR 68 (89)
T ss_pred CCCEeEEEEecc-----------------cccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHH
Confidence 589999888754 689999999999999999999999999999999999 89999999999999
Q ss_pred hhhhCCCeEEe
Q 028511 167 LYKGQGFKCVK 177 (208)
Q Consensus 167 ~y~k~GF~~~~ 177 (208)
+..++||...-
T Consensus 69 ~~~~lg~~~~p 79 (89)
T PF08444_consen 69 LSKSLGFIFMP 79 (89)
T ss_pred HHHHCCCeecC
Confidence 99999998753
No 64
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=99.01 E-value=6.4e-09 Score=73.29 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=51.2
Q ss_pred CCceEEEEEEeCccccccChHHHHHHHHHHHH-------------------------HhcCCceEEEEeecCChhhHhhh
Q 028511 114 TGIAYISNVAVREKFRRKGIAKRLIAKAEAQA-------------------------RGWGCRSIALHCDFNNLGATKLY 168 (208)
Q Consensus 114 ~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~-------------------------~~~g~~~i~l~~~~~n~~a~~~y 168 (208)
-..+.|.+++|+|++|++|+|+++++.+++++ +..++..+-+... -++...+||
T Consensus 88 l~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG-~t~~Ll~FW 166 (196)
T PF13718_consen 88 LSGARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFG-ATPELLKFW 166 (196)
T ss_dssp SEEEEEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------------------S-SEEEEEEE---HHHHHHH
T ss_pred hcceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccC-CCHHHHHHH
Confidence 44678999999999999999999999999999 3557776544332 345789999
Q ss_pred hhCCCeEEecCCCCCCCCCCCCCCchhhhhhhhc
Q 028511 169 KGQGFKCVKVPEGANWPQPKNSPDVKFKFMMKLL 202 (208)
Q Consensus 169 ~k~GF~~~~~~~~~~~~~~~~~~~~~~~~m~k~l 202 (208)
.|+||..+....... ...|....+|.|.|
T Consensus 167 ~k~gf~pv~l~~~~n-----~~SGe~S~imlr~l 195 (196)
T PF13718_consen 167 QKNGFVPVYLGQTRN-----EASGEHSAIMLRPL 195 (196)
T ss_dssp HCTT-EEEEE-SS-------TTT---EEEEEEE-
T ss_pred HHCCcEEEEEecCcc-----cccCceeeeEEeec
Confidence 999999987643321 11233356666655
No 65
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=98.96 E-value=3.4e-08 Score=73.19 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=78.1
Q ss_pred CCCCeeEEecccccHHHHHH-hhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEecc
Q 028511 20 XSPEIVVREARIEDIWEVAE-THCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDT 98 (208)
Q Consensus 20 ~~~~i~ir~~~~~D~~~i~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~ 98 (208)
.+..+.|+++.++.+..... .+...+...|....++.. . ..-+++..+ |+||+-+....
T Consensus 125 lp~~y~l~~Ide~l~~~~~~e~~s~d~~~~~~s~e~Fl~----~--G~Gf~i~~~--------------~~iVs~~~s~~ 184 (265)
T PF12746_consen 125 LPEGYELKRIDEELYENSLEEEWSEDLVSQFSSYEDFLK----N--GFGFCILHD--------------GEIVSGCSSYF 184 (265)
T ss_dssp S-TTCEEEE--HHHHHHHHHSCCCGGGTTTSSSHHHHHH----H----EEEEEET--------------TEEEEEEEEEE
T ss_pred CCCCeEEEECCHHHHHhhhhhHhHHHHHHhcCCHHHHHh----c--CcEEEEEEC--------------CEEEEEEEEEE
Confidence 34568889988887777652 233334444433222221 1 233444444 67766443322
Q ss_pred ccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 99 VADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
.. .+...| .+.++|+|||+|+|+.+..+++..|.++|..- .+.| .|.+|+++-+|+||+....
T Consensus 185 ~~-------------~~~~EI-~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P-~WDc--~N~~S~~lA~kLGf~~~~~ 247 (265)
T PF12746_consen 185 VY-------------ENGIEI-DIETHPEYRGKGLATAVAAAFILECLENGLYP-SWDC--HNLASIALAEKLGFHFDFE 247 (265)
T ss_dssp EE-------------TTEEEE-EEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EE-E-EE--SSHHHHHHHHHCT--EEEE
T ss_pred EE-------------CCEEEE-EEEECHHhhcCCHHHHHHHHHHHHHHHCCCCc-CeeC--CCHHHHHHHHHcCCcccce
Confidence 11 135777 88999999999999999999999999998774 4555 5999999999999999886
Q ss_pred CCCC
Q 028511 179 PEGA 182 (208)
Q Consensus 179 ~~~~ 182 (208)
...+
T Consensus 248 Y~~Y 251 (265)
T PF12746_consen 248 YTAY 251 (265)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5444
No 66
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.91 E-value=1.4e-08 Score=58.44 Aligned_cols=58 Identities=31% Similarity=0.534 Sum_probs=49.5
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEE
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIAL 155 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l 155 (208)
+++++|++.+..... ....+++..++|+|+|||+|+|++++..+.+++++.|+..+.+
T Consensus 7 ~~~~ig~~~~~~~~~-----------~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 7 DGEIVGFASLSPDGS-----------GGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred CCEEEEEEEEEecCC-----------CCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 489999999876432 2357899899999999999999999999999999988888765
No 67
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.74 E-value=1e-07 Score=57.53 Aligned_cols=66 Identities=27% Similarity=0.412 Sum_probs=50.6
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHh
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATK 166 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~ 166 (208)
+|+.+|++.... .++...|.+..|.|++||+|+|+.|++.++++++++|.+ |...|. =+.+
T Consensus 7 ~g~~~a~l~Y~~--------------~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k-v~p~C~----y~~~ 67 (78)
T PF14542_consen 7 DGEEIAELTYRE--------------DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK-VVPTCS----YVAK 67 (78)
T ss_dssp STTEEEEEEEEE--------------SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E-EEETSH----HHHH
T ss_pred CCEEEEEEEEEe--------------CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE-EEEECH----HHHH
Confidence 488999998854 235899999999999999999999999999999999888 444444 3455
Q ss_pred hhhhC
Q 028511 167 LYKGQ 171 (208)
Q Consensus 167 ~y~k~ 171 (208)
+++++
T Consensus 68 ~~~~h 72 (78)
T PF14542_consen 68 YFRRH 72 (78)
T ss_dssp HHHH-
T ss_pred HHHhC
Confidence 55554
No 68
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=98.71 E-value=8.2e-08 Score=72.34 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=63.3
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhh
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKL 167 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~ 167 (208)
.++++.+...+..-++ ....-....|..+++.|+|||+|..++|+.+.++..+++|+....|.. .+.+|
T Consensus 48 qkl~s~L~i~~f~~~f------~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P-----~s~~i 116 (389)
T COG4552 48 QKLASRLHIPPFIFWF------GNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHP-----FSGGI 116 (389)
T ss_pred hhhhhcccccchheee------CCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEecc-----Cchhh
Confidence 5666666665433222 233335789999999999999999999999999999999999877743 34799
Q ss_pred hhhCCCeEEecC
Q 028511 168 YKGQGFKCVKVP 179 (208)
Q Consensus 168 y~k~GF~~~~~~ 179 (208)
|+|+||+..+..
T Consensus 117 YrKfGye~asn~ 128 (389)
T COG4552 117 YRKFGYEYASNY 128 (389)
T ss_pred HhhccccccceE
Confidence 999999987764
No 69
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=1.2e-06 Score=57.92 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=57.8
Q ss_pred CceEEEEEEeCccccccChHHHHHHHHHHHHHhc-CCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 115 GIAYISNVAVREKFRRKGIAKRLIAKAEAQARGW-GCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 115 ~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
..+.+.-+.-.|..||+|+|+..+.+++.++... +..+..+.+..+|.+++++|+|++|..+...
T Consensus 106 ~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~n 171 (185)
T KOG4135|consen 106 ITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFYN 171 (185)
T ss_pred eeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeeee
Confidence 4567766666899999999999999999999986 8888999999999999999999999998763
No 70
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=98.68 E-value=4.3e-07 Score=75.80 Aligned_cols=85 Identities=21% Similarity=0.174 Sum_probs=62.4
Q ss_pred CCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCCCCCCCCCCCCCc
Q 028511 114 TGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEGANWPQPKNSPDV 193 (208)
Q Consensus 114 ~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~~~ 193 (208)
-..+-|.+++|+|++|++|||++|++.++++++ .|+..+-.. .--++...+||.|+||.++...+...-.- |-
T Consensus 529 l~G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~Dwlgvs-FG~t~~L~rFW~rnGF~pVhls~~rn~~S-----Ge 601 (758)
T COG1444 529 LVGWRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVS-FGYTEELLRFWLRNGFVPVHLSPTRNASS-----GE 601 (758)
T ss_pred cceeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeec-cCCCHHHHHHHHHcCeEEEEecCccCcCC-----Cc
Confidence 345788899999999999999999999999997 456644333 33455889999999999998765542222 22
Q ss_pred hhhhhhhhccCC
Q 028511 194 KFKFMMKLLKAP 205 (208)
Q Consensus 194 ~~~~m~k~l~~~ 205 (208)
...+|.|.|+.+
T Consensus 602 ys~i~lkpLs~~ 613 (758)
T COG1444 602 YTAIVLKPLSDA 613 (758)
T ss_pred eeEEEEecCCHH
Confidence 246677776543
No 71
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.63 E-value=1.3e-06 Score=56.72 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=58.2
Q ss_pred CCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHH
Q 028511 62 RMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKA 141 (208)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~ 141 (208)
......+.+.-| ++++|.+.+... +..+.|..++|.+--|++|+|..|++.+
T Consensus 35 ~~~~~l~aArFN--------------dRlLgAv~v~~~--------------~~~~~L~~l~VRevTRrRGVG~yLlee~ 86 (128)
T PF12568_consen 35 DEGHRLFAARFN--------------DRLLGAVKVTIS--------------GQQAELSDLCVREVTRRRGVGLYLLEEV 86 (128)
T ss_dssp -SSEEEEEEEET--------------TEEEEEEEEEEE--------------TTEEEEEEEEE-TT-SSSSHHHHHHHHH
T ss_pred ccCCeEEEEEec--------------hheeeeEEEEEc--------------CcceEEeeEEEeeccccccHHHHHHHHH
Confidence 345677777777 999999888642 2479999999999999999999999998
Q ss_pred HHHHHhcCCceEEEEeec---CC-hhhHhhhhhCCCeEE
Q 028511 142 EAQARGWGCRSIALHCDF---NN-LGATKLYKGQGFKCV 176 (208)
Q Consensus 142 ~~~~~~~g~~~i~l~~~~---~n-~~a~~~y~k~GF~~~ 176 (208)
.+.+ .+++.+.+.... .+ .....|...+||...
T Consensus 87 ~rq~--p~i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 87 LRQL--PDIKHWWLADEGVEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp HHHS---S--EEEE--TT-S--THHHHHHHHHHHT-EE-
T ss_pred HHHC--CCCcEEEEecCCCcccchHHHHHHHHHcCcccc
Confidence 8877 356666665332 12 345688999999654
No 72
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.37 E-value=2.6e-06 Score=53.35 Aligned_cols=55 Identities=33% Similarity=0.421 Sum_probs=46.7
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEE
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIAL 155 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l 155 (208)
|..+|.+..... +.+...|.+-+|.+++||+|+|++|+..+++.+++.|.+.+=+
T Consensus 24 G~~~~e~~y~~~-------------~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~ 78 (99)
T COG2388 24 GEVIGEATYYDR-------------GENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPL 78 (99)
T ss_pred CcEEEEEEEecC-------------CCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEccc
Confidence 888888887543 2367999999999999999999999999999999999875433
No 73
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.33 E-value=2.4e-05 Score=57.90 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=65.1
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHh
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATK 166 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~ 166 (208)
++++|++..+.. -.|..++|++.+||-|++-+|+.++++.+.+.|...+.+.+.+ ....
T Consensus 45 ~~~iiacGsiaG------------------nvikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp---~~~~ 103 (352)
T COG3053 45 NEEIIACGSIAG------------------NVIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKP---EYAA 103 (352)
T ss_pred CCcEEEeccccc------------------ceeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEech---hHHH
Confidence 389999877743 4677899999999999999999999999999999999999988 5579
Q ss_pred hhhhCCCeEEecCCCC
Q 028511 167 LYKGQGFKCVKVPEGA 182 (208)
Q Consensus 167 ~y~k~GF~~~~~~~~~ 182 (208)
+|+.+||......+..
T Consensus 104 lFk~~GF~~i~~~~~~ 119 (352)
T COG3053 104 LFKQCGFSEIASAENV 119 (352)
T ss_pred HHHhCCceEeeccCce
Confidence 9999999998766543
No 74
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.30 E-value=3.6e-06 Score=53.59 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=56.2
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhh
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKL 167 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~ 167 (208)
|.+|||+.+-..+. .+......+..+.|...|||+|+|++...++....+ |. ..+.+..+|..|+.|
T Consensus 46 ~~~igf~l~L~~~~---------~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~--g~--w~Va~i~EN~PA~~f 112 (143)
T COG5628 46 GLPVGFALVLDLAH---------SPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW--GV--WQVATVRENTPARAF 112 (143)
T ss_pred CceeeeeeeecccC---------CCCcccccchheEeeehhhccchhHHHHHHHHHHhh--ce--EEEEEeccCChhHHH
Confidence 78999988754221 122335677889999999999999999999876654 32 456678899999999
Q ss_pred hhhCCCe
Q 028511 168 YKGQGFK 174 (208)
Q Consensus 168 y~k~GF~ 174 (208)
|++.-+.
T Consensus 113 wK~~~~t 119 (143)
T COG5628 113 WKRVAET 119 (143)
T ss_pred HHhhhcc
Confidence 9998655
No 75
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=98.28 E-value=4.4e-05 Score=58.51 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=75.6
Q ss_pred CeeEEecccccHHHHHHhhhhcCC--CCCCChHHHHH--------hh---h-cC--CCceEEEEeecCcccccCCccccC
Q 028511 23 EIVVREARIEDIWEVAETHCSCFF--PNYTFPLDLML--------RV---D-SR--MDETFFLGSEDFKVGGLDGKFSLH 86 (208)
Q Consensus 23 ~i~ir~~~~~D~~~i~~l~~~~~~--~~~~~~~~~~~--------~~---~-~~--~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
|+.|||++.+|+++|.+|...+-. ...+...+... .+ . .. ...+.+|.++. +
T Consensus 1 M~viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~------------~ 68 (342)
T PF04958_consen 1 MLVIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDT------------E 68 (342)
T ss_dssp -EEEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEET------------T
T ss_pred CeEEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEec------------C
Confidence 478999999999999999987743 23333322211 11 1 11 22355666652 1
Q ss_pred CCcEEEEEEeccccC----CCCCC-------------------CCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHH
Q 028511 87 RGYVAGILTVDTVAD----FLPRK-------------------GPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEA 143 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~----~~~~~-------------------~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~ 143 (208)
.|+|+|++.+..... ++... ...-..-.+.-+|+.++++|+||+.|.|+.|-..-.-
T Consensus 69 tg~vvGts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfL 148 (342)
T PF04958_consen 69 TGEVVGTSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFL 148 (342)
T ss_dssp T--EEEEEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHH
T ss_pred CCcEEEEEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHH
Confidence 489999998854322 11110 0012234567899999999999999999999887776
Q ss_pred HHHhc--CCc-eEEEE--eecCChhhHhhhhhCCCeEE
Q 028511 144 QARGW--GCR-SIALH--CDFNNLGATKLYKGQGFKCV 176 (208)
Q Consensus 144 ~~~~~--g~~-~i~l~--~~~~n~~a~~~y~k~GF~~~ 176 (208)
++.+. -+. .+... -..+..+--+||+.+|-+..
T Consensus 149 FiA~~~~rF~~~viAElrG~~De~G~SPFWdalG~~FF 186 (342)
T PF04958_consen 149 FIAQHRERFADRVIAELRGVSDEDGRSPFWDALGRHFF 186 (342)
T ss_dssp HHHH-GGGS-SEEEEE--B---TT---HHHHHTGGGTS
T ss_pred HHHhChhhcchheeeeccCCcCCCCCCchHHHhhcccc
Confidence 66554 222 23332 22233356799999885544
No 76
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=98.25 E-value=2.4e-05 Score=55.20 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=86.3
Q ss_pred cccccHHHHHHhhhhcCCCCCCChHHHHH--hhh--cCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccC---
Q 028511 29 ARIEDIWEVAETHCSCFFPNYTFPLDLML--RVD--SRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVAD--- 101 (208)
Q Consensus 29 ~~~~D~~~i~~l~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~--- 101 (208)
+..++++++..+-.+.|.....+...... +.+ +.....++++.++ |+++|++.+.+...
T Consensus 5 ~~~~~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~--------------g~v~g~~RLlptt~p~M 70 (182)
T PF00765_consen 5 LSRRLLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDD--------------GRVVGCARLLPTTGPYM 70 (182)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEET--------------TEEEEEEEEEETTS--H
T ss_pred cCHHHHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEEC--------------CEEEEEeeeccCCCcch
Confidence 44567888888888888765544332111 111 2334455555555 89999988765321
Q ss_pred ---CCCCC--CCCCCCCCCceEEEEEEeCccccc------cChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhh
Q 028511 102 ---FLPRK--GPLRQRRTGIAYISNVAVREKFRR------KGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKG 170 (208)
Q Consensus 102 ---~~~~~--~~~~~~~~~~~~i~~l~v~p~~rg------~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k 170 (208)
.++.. ........+.+++..++|+++.++ .-+...|+..+.+++.++|++.++..+.. ...+++.+
T Consensus 71 L~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~---~~~r~l~r 147 (182)
T PF00765_consen 71 LSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDP---AMERILRR 147 (182)
T ss_dssp HHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEH---HHHHHHHH
T ss_pred hhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEECh---HHHHHHHH
Confidence 11111 112333468999999999998532 24678999999999999999999988876 78999999
Q ss_pred CCCeEEec
Q 028511 171 QGFKCVKV 178 (208)
Q Consensus 171 ~GF~~~~~ 178 (208)
.||.....
T Consensus 148 ~G~~~~~l 155 (182)
T PF00765_consen 148 AGWPVRRL 155 (182)
T ss_dssp CT-EEEES
T ss_pred cCCceEEC
Confidence 99987753
No 77
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=98.10 E-value=4.8e-06 Score=53.96 Aligned_cols=44 Identities=34% Similarity=0.437 Sum_probs=40.6
Q ss_pred EEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCC
Q 028511 122 VAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGF 173 (208)
Q Consensus 122 l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF 173 (208)
++|+|+|||+|+|+.|++.+++.++..|+. .|..+..+|.++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce--------ehHHHHHHHHhcCC
Confidence 999999999999999999999999997766 66688999999998
No 78
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=98.09 E-value=0.00018 Score=51.92 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=84.4
Q ss_pred ccccHHHHHHhhhhcCCCCCCChHHHH--Hhhh--cCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccC----
Q 028511 30 RIEDIWEVAETHCSCFFPNYTFPLDLM--LRVD--SRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVAD---- 101 (208)
Q Consensus 30 ~~~D~~~i~~l~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~---- 101 (208)
..++++++..+-.+.|.....+..... .+.+ +.....+++...+ +|+++|++-+-+...
T Consensus 14 ~~~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~-------------~g~vvG~~RLlptt~p~ml 80 (207)
T PRK13834 14 EASLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISD-------------SGRVAGCARLLPAIGPTML 80 (207)
T ss_pred CHHHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeC-------------CCeEEEEEecccCCCcchh
Confidence 355677777777777765443322111 1111 2233445554433 379999987754321
Q ss_pred --CCCCCC--CCCCCCCCceEEEEEEeCcccccc---C----hHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhh
Q 028511 102 --FLPRKG--PLRQRRTGIAYISNVAVREKFRRK---G----IAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKG 170 (208)
Q Consensus 102 --~~~~~~--~~~~~~~~~~~i~~l~v~p~~rg~---G----ig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k 170 (208)
.++... .......+.+++..++|++++++. + +...|+..+.+++..+|++.++..+.+ ...+++.+
T Consensus 81 ~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~---~~~r~l~r 157 (207)
T PRK13834 81 AQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDL---RFERILAR 157 (207)
T ss_pred hhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECH---HHHHHHHH
Confidence 111111 112235789999999999986322 2 567899999999999999999887776 67889999
Q ss_pred CCCeEEe
Q 028511 171 QGFKCVK 177 (208)
Q Consensus 171 ~GF~~~~ 177 (208)
+||....
T Consensus 158 ~G~~~~~ 164 (207)
T PRK13834 158 AGWPMQR 164 (207)
T ss_pred cCCCeEE
Confidence 9987653
No 79
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=98.05 E-value=7e-05 Score=55.39 Aligned_cols=136 Identities=20% Similarity=0.163 Sum_probs=86.4
Q ss_pred eeEEecc-cccHHHHHHhhhhcCCCCCCCh------HHHH-HhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEE
Q 028511 24 IVVREAR-IEDIWEVAETHCSCFFPNYTFP------LDLM-LRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILT 95 (208)
Q Consensus 24 i~ir~~~-~~D~~~i~~l~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~ 95 (208)
+.++.+. .+++.++..+..++|.....++ .... ... +.. ...+++... ++|++||++.
T Consensus 8 ~~v~~a~~~~~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~-D~~-~~h~l~~~~------------~~g~vvG~~R 73 (241)
T TIGR03694 8 FEIIPAVTPELLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEY-DAH-SVHSLLRHR------------RTGTFVGCVR 73 (241)
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCC-CCC-CcEEEEEEC------------CCCCEEEEEE
Confidence 4566554 4557888888877775433332 1111 112 222 333333321 0378999988
Q ss_pred ecccc---C--------CCCCC--C----CCCCCCCCceEEEEEEeCcccccc--------C------------------
Q 028511 96 VDTVA---D--------FLPRK--G----PLRQRRTGIAYISNVAVREKFRRK--------G------------------ 132 (208)
Q Consensus 96 ~~~~~---~--------~~~~~--~----~~~~~~~~~~~i~~l~v~p~~rg~--------G------------------ 132 (208)
+.+.. + .+... . .........+++..++|++++|++ |
T Consensus 74 Ll~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T TIGR03694 74 LVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRF 153 (241)
T ss_pred EeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccC
Confidence 76531 1 11000 0 000134689999999999999974 2
Q ss_pred --hHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEE
Q 028511 133 --IAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCV 176 (208)
Q Consensus 133 --ig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~ 176 (208)
+...|+..+.+++.+.|++.++..+.+ ...+++.++|+...
T Consensus 154 ~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~---~l~r~l~r~G~~~~ 196 (241)
T TIGR03694 154 PHIPLGLYLGLIALSSANGITHWYAIMEP---RLARLLSRFGIQFR 196 (241)
T ss_pred chHHHHHHHHHHHHHHHCCCcEEEEEeCH---HHHHHHHHhCCceE
Confidence 567799999999999999999888877 67889999997654
No 80
>PRK10456 arginine succinyltransferase; Provisional
Probab=98.02 E-value=0.00011 Score=56.26 Aligned_cols=143 Identities=13% Similarity=0.167 Sum_probs=85.1
Q ss_pred CeeEEecccccHHHHHHhhhhcCCC--CCCChHHHHH-hhh----------c-CCCceEEEEeecCcccccCCccccCCC
Q 028511 23 EIVVREARIEDIWEVAETHCSCFFP--NYTFPLDLML-RVD----------S-RMDETFFLGSEDFKVGGLDGKFSLHRG 88 (208)
Q Consensus 23 ~i~ir~~~~~D~~~i~~l~~~~~~~--~~~~~~~~~~-~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (208)
|+.|||++.+|+++|.+|...+-.. ..+...+... ++. . ....+.||.++. +.|
T Consensus 1 M~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~------------~tg 68 (344)
T PRK10456 1 MMVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDS------------ETG 68 (344)
T ss_pred CeEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeC------------CCC
Confidence 3789999999999999998876422 2222222211 111 1 233455566542 148
Q ss_pred cEEEEEEecccc----CCCCCCC-------------------CCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHH
Q 028511 89 YVAGILTVDTVA----DFLPRKG-------------------PLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQA 145 (208)
Q Consensus 89 ~ivG~~~~~~~~----~~~~~~~-------------------~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~ 145 (208)
+|+|++.+.... +|+.... ..-..-.+.-+|+.|+++|+||+.|.|+.|-+.-.-++
T Consensus 69 ~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~RfLFi 148 (344)
T PRK10456 69 TVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFM 148 (344)
T ss_pred cEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHHHHHHH
Confidence 999998875422 2221100 01233456779999999999999999998877655544
Q ss_pred Hhc--CC-ce--EEEEeecCChhhHhhhhhCCCeEEe
Q 028511 146 RGW--GC-RS--IALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 146 ~~~--g~-~~--i~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
.+. -+ .+ ..+--..+..+.-+||+.+|=+..+
T Consensus 149 A~~~erF~~~viAEmRG~~De~G~SPFWd~lg~hFF~ 185 (344)
T PRK10456 149 AAFRDKFNDKVVAEMRGVIDEHGYSPFWQSLGKRFFS 185 (344)
T ss_pred HhhHhhhhhhhheeccCccCCCCCCccHHHhhccccC
Confidence 432 11 11 2222333444567899998876654
No 81
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.96 E-value=0.00038 Score=48.72 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=53.0
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhh
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKL 167 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~ 167 (208)
.++|+.+.+-...+ .....++....++.++++|+|||+|+++.+-+.+.+..+..+-. +.+. .+..+.++
T Consensus 56 ~~via~~~~~~~~~------l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~~~~~~~~~N-~~~~---~~~~~~~~ 125 (181)
T PF06852_consen 56 DRVIATVHLIRFDP------LNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICMDELDSVDDN-SVAQ---GNVKMSNF 125 (181)
T ss_pred CcEEEEEEEEEecc------CCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHHHHhccCCCc-eeee---cCHHHHHH
Confidence 67887766633221 01122356789999999999999999976666655655554444 3332 34478888
Q ss_pred hhh-CCCeEEec
Q 028511 168 YKG-QGFKCVKV 178 (208)
Q Consensus 168 y~k-~GF~~~~~ 178 (208)
|.+ +||...+.
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 875 59888776
No 82
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00072 Score=48.28 Aligned_cols=135 Identities=17% Similarity=0.139 Sum_probs=89.4
Q ss_pred CeeEEecc-cccHHHHHHhhhhcCCCCCC--ChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccc
Q 028511 23 EIVVREAR-IEDIWEVAETHCSCFFPNYT--FPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTV 99 (208)
Q Consensus 23 ~i~ir~~~-~~D~~~i~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~ 99 (208)
.+.+|.++ +.++++..++...+|..... .+.+....+ .......+-+..+ +|++||.....+.
T Consensus 2 ~vvvrrl~dp~el~~~~dV~~~aWg~~d~~~~~~d~i~al-~~~GGlvlgAf~~-------------dg~lVGls~G~pg 67 (266)
T COG3375 2 KVVVRRLTDPAELDEAEDVQASAWGSEDRDGAPADTIRAL-RYHGGLVLGAFSA-------------DGRLVGLSYGYPG 67 (266)
T ss_pred ceeEEecCCHHHHHHHHHHHHHHhCccccccchHHHHHHH-HhcCCeEEEEEcC-------------CCcEEEEEeccCC
Confidence 46677764 67888888888887643321 222333322 2233444444444 4699998665431
Q ss_pred cCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhh-hhhCCCeEEec
Q 028511 100 ADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKL-YKGQGFKCVKV 178 (208)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~-y~k~GF~~~~~ 178 (208)
. .......+-+.++|.|+++++|+|-+|=...-+++.++|+..+.+...+-|....+| ..|+|-.....
T Consensus 68 ~----------r~g~~y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~G~tli~WTfDPl~alNA~fNi~KLGa~artY 137 (266)
T COG3375 68 G----------RGGSLYLYSHMLGVREEVKGSGLGVALKMKQRERALSMGYTLIAWTFDPLNALNARFNISKLGAIARTY 137 (266)
T ss_pred c----------CCCceeeeeeehhccccccccchhhhhHHHHHHHHHhcCeeeEEEecccchhhhhhcchhhhceeEEEe
Confidence 0 011225677789999999999999999999999999999999999988887655555 45777554443
Q ss_pred CCC
Q 028511 179 PEG 181 (208)
Q Consensus 179 ~~~ 181 (208)
.++
T Consensus 138 i~n 140 (266)
T COG3375 138 IKN 140 (266)
T ss_pred ecc
Confidence 333
No 83
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.85 E-value=0.00066 Score=45.59 Aligned_cols=107 Identities=14% Similarity=0.045 Sum_probs=74.7
Q ss_pred eeEEec-ccccHHHHHHhhhhcCCCC-----CCChHHHHHhhhcC----CCceEEEEeecCcccccCCccccCCCcEEEE
Q 028511 24 IVVREA-RIEDIWEVAETHCSCFFPN-----YTFPLDLMLRVDSR----MDETFFLGSEDFKVGGLDGKFSLHRGYVAGI 93 (208)
Q Consensus 24 i~ir~~-~~~D~~~i~~l~~~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~ 93 (208)
+.++.. .++|++.+.+++...+... ...+.++...+... ..-..+++..+ |++||+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--------------g~~va~ 85 (142)
T PF13480_consen 20 VRFEVATDPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDG--------------GEPVAF 85 (142)
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEEC--------------CEEEEE
Confidence 555553 5778999988887665433 12344555544322 22344445555 888888
Q ss_pred EEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEee
Q 028511 94 LTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCD 158 (208)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~ 158 (208)
...... ++..+.....++|+++..+.|..|+..+++++.+.|++.+.+...
T Consensus 86 ~~~~~~--------------~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 86 ALGFRH--------------GGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred EEEEEE--------------CCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 765432 236778888899999999999999999999999999998877553
No 84
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.75 E-value=0.00022 Score=56.58 Aligned_cols=135 Identities=17% Similarity=0.127 Sum_probs=96.0
Q ss_pred CCCeeEEecccccHHHHHHhhhhcCCCCCCChH---HHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEec
Q 028511 21 SPEIVVREARIEDIWEVAETHCSCFFPNYTFPL---DLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVD 97 (208)
Q Consensus 21 ~~~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~ 97 (208)
.+.++++++.+.+++.|.+|...+-........ +-...+...+....+-....+.+. |.-+||.+.+.
T Consensus 411 em~l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfg---------DnGiigvviv~ 481 (574)
T COG3882 411 EMRLTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFG---------DNGIIGVVIVE 481 (574)
T ss_pred eEEEEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccc---------cCceEEEEEEE
Confidence 466888999999999999998876332222111 111222223333333333333332 57789998885
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeec--CChhhHhhhhhCCCeE
Q 028511 98 TVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF--NNLGATKLYKGQGFKC 175 (208)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~--~n~~a~~~y~k~GF~~ 175 (208)
.. .+.+.|+.+...-..=|+++-.+|+..+++.|...|...+...-.+ .|.....||+++||+.
T Consensus 482 kk--------------~~~w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l 547 (574)
T COG3882 482 KK--------------ESEWFIDTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKL 547 (574)
T ss_pred ec--------------CCeEEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhcccc
Confidence 42 2468888888888889999999999999999999999999887544 5778899999999996
Q ss_pred Eec
Q 028511 176 VKV 178 (208)
Q Consensus 176 ~~~ 178 (208)
.++
T Consensus 548 ~~e 550 (574)
T COG3882 548 KGE 550 (574)
T ss_pred ccc
Confidence 654
No 85
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=97.69 E-value=0.0007 Score=51.82 Aligned_cols=141 Identities=13% Similarity=0.168 Sum_probs=82.7
Q ss_pred eEEecccccHHHHHHhhhhcCCC--CCCChHHHHH------------hhh-cCCCceEEEEeecCcccccCCccccCCCc
Q 028511 25 VVREARIEDIWEVAETHCSCFFP--NYTFPLDLML------------RVD-SRMDETFFLGSEDFKVGGLDGKFSLHRGY 89 (208)
Q Consensus 25 ~ir~~~~~D~~~i~~l~~~~~~~--~~~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (208)
.|||++.+|+++|.+|...+-.. ..+...+... ... .....+.||.++. +.|+
T Consensus 1 viRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt------------~tg~ 68 (336)
T TIGR03245 1 IVRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDT------------ETGK 68 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeC------------CCCc
Confidence 37999999999999998876422 2222221111 111 2223455566542 1489
Q ss_pred EEEEEEecccc----CCCCCCC-------------------CCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHH
Q 028511 90 VAGILTVDTVA----DFLPRKG-------------------PLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQAR 146 (208)
Q Consensus 90 ivG~~~~~~~~----~~~~~~~-------------------~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~ 146 (208)
|+|++.+.... +|+.... ..-..-.+.-+|+.|+++|+||+.|.|+.|-+.-.-++.
T Consensus 69 vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~RfLFiA 148 (336)
T TIGR03245 69 LLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRARLLFMA 148 (336)
T ss_pred EEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHHHHHHHH
Confidence 99998875422 2221100 012334567799999999999999999988776655444
Q ss_pred hc--CC-ceE--EEEeecCChhhHhhhhhCCCeEEe
Q 028511 147 GW--GC-RSI--ALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 147 ~~--g~-~~i--~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
+. -+ .++ .+.-..+..+--+||+.+|-+..+
T Consensus 149 ~~~erF~~~viAEmrG~~De~G~SPFWd~lg~hFF~ 184 (336)
T TIGR03245 149 AHRERFQSRIIVEIQGVQDDNGDSPFWDAIGRHFFD 184 (336)
T ss_pred hhHhhhhhhheeeccCccCCCCCCccHHHhhccccC
Confidence 32 11 112 222233334566899998876654
No 86
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.66 E-value=6.8e-05 Score=59.00 Aligned_cols=51 Identities=22% Similarity=0.461 Sum_probs=45.1
Q ss_pred CccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 125 REKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 125 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
...||.+|+|+.||+.+++.|++.+..+|.+...- +++.+|.|+||+..|.
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgi---G~ReYy~k~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGI---GVREYYRKLGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecc---cHHHHHHHhCccccCC
Confidence 57899999999999999999999998888776554 8899999999998873
No 87
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=97.65 E-value=0.00076 Score=51.59 Aligned_cols=141 Identities=13% Similarity=0.185 Sum_probs=82.6
Q ss_pred eEEecccccHHHHHHhhhhcCCC--CCCChHHHHH------------hhhcCCCceEEEEeecCcccccCCccccCCCcE
Q 028511 25 VVREARIEDIWEVAETHCSCFFP--NYTFPLDLML------------RVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYV 90 (208)
Q Consensus 25 ~ir~~~~~D~~~i~~l~~~~~~~--~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 90 (208)
.|||++.+|+++|.+|...+-.. ..+...+... ........+.||.++. +.|+|
T Consensus 1 vvRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~------------~tg~v 68 (335)
T TIGR03243 1 IVRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDT------------ETGTV 68 (335)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeC------------CCCeE
Confidence 37999999999999998876322 2222221111 1112233445566542 14899
Q ss_pred EEEEEecccc----CCCCCCC-------------------CCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHh
Q 028511 91 AGILTVDTVA----DFLPRKG-------------------PLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARG 147 (208)
Q Consensus 91 vG~~~~~~~~----~~~~~~~-------------------~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~ 147 (208)
+|++.+.... +|+.... ..-..-.+.-+|+.++++|+||+.|.|+.|-+.-.-++.+
T Consensus 69 vGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~RfLFiA~ 148 (335)
T TIGR03243 69 AGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRFLFIAA 148 (335)
T ss_pred EEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHHHHHHHHh
Confidence 9998875422 2221110 0123345677999999999999999999887766554443
Q ss_pred c--CC-ceE--EEEeecCChhhHhhhhhCCCeEEe
Q 028511 148 W--GC-RSI--ALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 148 ~--g~-~~i--~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
. -+ .++ .+.-..+..+--+||+.+|-+..+
T Consensus 149 ~~erF~~~viAEmrG~~De~G~SPFWd~lg~hFF~ 183 (335)
T TIGR03243 149 FRERFGDKIIAEMRGVSDEQGRSPFWEALGRHFFS 183 (335)
T ss_pred hHhhhhhhheeeccCccCCCCCCccHHHhhccccC
Confidence 2 11 112 222233334556899999877664
No 88
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=97.56 E-value=0.00086 Score=51.38 Aligned_cols=141 Identities=16% Similarity=0.225 Sum_probs=82.4
Q ss_pred eEEecccccHHHHHHhhhhcCCC--CCCChHHHHH-hhh----------c-CCCceEEEEeecCcccccCCccccCCCcE
Q 028511 25 VVREARIEDIWEVAETHCSCFFP--NYTFPLDLML-RVD----------S-RMDETFFLGSEDFKVGGLDGKFSLHRGYV 90 (208)
Q Consensus 25 ~ir~~~~~D~~~i~~l~~~~~~~--~~~~~~~~~~-~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 90 (208)
.|||++.+|+++|.+|...+-.. ..+...+... ++. . ....+.||.++. +.|+|
T Consensus 1 vvRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt------------~tg~v 68 (336)
T TIGR03244 1 IVRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDT------------ETGTV 68 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeC------------CCCeE
Confidence 37999999999999998876422 2222222211 111 1 223455566542 13899
Q ss_pred EEEEEecccc----CCCCCCC-------------------CCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHh
Q 028511 91 AGILTVDTVA----DFLPRKG-------------------PLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARG 147 (208)
Q Consensus 91 vG~~~~~~~~----~~~~~~~-------------------~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~ 147 (208)
+|++.+.... +|+.... ..-..-.+.-+|+.|+++|+||+.|.|+.|-+.-.-++.+
T Consensus 69 vGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~RfLFiA~ 148 (336)
T TIGR03244 69 AGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKSRFLFIAQ 148 (336)
T ss_pred EEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHHHHHHHHh
Confidence 9998875422 2221100 0123345677999999999999999999887765544433
Q ss_pred c--CC-ceE--EEEeecCChhhHhhhhhCCCeEEe
Q 028511 148 W--GC-RSI--ALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 148 ~--g~-~~i--~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
. -+ .++ .+.-..+..+.-+||+.+|-+..+
T Consensus 149 ~~erF~~~viAEmrG~~De~G~SPFWd~lg~hFF~ 183 (336)
T TIGR03244 149 FRERFSKKIIAEMRGVSDEQGRSPFWNALGRHFFS 183 (336)
T ss_pred hHhhhhhhhhhhhcCccCCCCCCchHHHhhccccC
Confidence 2 11 112 222223333556899999877664
No 89
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=97.53 E-value=0.00099 Score=42.89 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=49.8
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhh
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKL 167 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~ 167 (208)
|.++|++-+....-+..........-....-|-.++|+++.|++|+|++|+++++..- +..--.+.+....+....|
T Consensus 18 g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~e---~~~p~~~a~DrPS~Kll~F 94 (120)
T PF05301_consen 18 GAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQEE---NVSPHQLAIDRPSPKLLSF 94 (120)
T ss_pred ceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHHc---CCCcccceecCCcHHHHHH
Confidence 7899998765433322111111111112335568999999999999999999986543 3443445555555567777
Q ss_pred hhhC
Q 028511 168 YKGQ 171 (208)
Q Consensus 168 y~k~ 171 (208)
.+|+
T Consensus 95 l~Kh 98 (120)
T PF05301_consen 95 LKKH 98 (120)
T ss_pred HHHh
Confidence 7664
No 90
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=97.52 E-value=0.005 Score=41.94 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=71.6
Q ss_pred CCCCCeeEEeccc---ccHHHHHHhhhhcCCCCC------CChHHHHHhhhcCCC---ceEEEEeecCcccccCCccccC
Q 028511 19 XXSPEIVVREARI---EDIWEVAETHCSCFFPNY------TFPLDLMLRVDSRMD---ETFFLGSEDFKVGGLDGKFSLH 86 (208)
Q Consensus 19 ~~~~~i~ir~~~~---~D~~~i~~l~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
..+..+....+.. ++++++.+++++.|..+- .++.++.......+. ++.+..... .
T Consensus 19 ~LP~gF~W~~~dl~d~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~------------~ 86 (162)
T PF01233_consen 19 PLPDGFEWSTLDLNDDEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVK------------S 86 (162)
T ss_dssp --STTEEEEE--TTSHHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEET------------T
T ss_pred CCCCCCEEEecCCCCHHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEEC------------C
Confidence 3455677776654 557778888888775432 355566665544332 233433321 1
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEE
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIA 154 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~ 154 (208)
.+++|||+..-+..-.. ....-...+|..|+|+++.|+++++--|+.++.+.+...|+-+..
T Consensus 87 ~~kLvgfIsaip~~irv------~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 87 SKKLVGFISAIPATIRV------RDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp TTEEEEEEEEEEEEEEE------TTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred CCEEEEEEccceEEEEE------eeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 38999998764422100 111224689999999999999999999999999999988866543
No 91
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=97.39 E-value=0.00026 Score=41.26 Aligned_cols=29 Identities=41% Similarity=0.556 Sum_probs=26.1
Q ss_pred ceEEEEEEeCccccccChHHHHHHHHHHH
Q 028511 116 IAYISNVAVREKFRRKGIAKRLIAKAEAQ 144 (208)
Q Consensus 116 ~~~i~~l~v~p~~rg~Gig~~ll~~~~~~ 144 (208)
.+.|..++|+|.+|++||+++||+.+.+.
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHh
Confidence 47888999999999999999999988765
No 92
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.37 E-value=0.0055 Score=43.52 Aligned_cols=136 Identities=18% Similarity=0.265 Sum_probs=87.5
Q ss_pred EecccccHHHHHHhhhhcCCCCCCChH----HHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccC-
Q 028511 27 REARIEDIWEVAETHCSCFFPNYTFPL----DLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVAD- 101 (208)
Q Consensus 27 r~~~~~D~~~i~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~- 101 (208)
+...++-++++..+-...|.....+.. .++...-+.....++++... +|+|+|++.+-+...
T Consensus 10 ~~~~~~~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~-------------~g~I~G~~RlLptt~P 76 (209)
T COG3916 10 RELFPKALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTS-------------DGRIVGCVRLLPTTGP 76 (209)
T ss_pred chhcHHHHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcC-------------CCcEEEEEEeccCCCc
Confidence 445566677777777777754433322 21111113333445555332 399999998754321
Q ss_pred -C----CCC--CCCCCCCCCCceEEEEEEeCc--cccccC----hHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhh
Q 028511 102 -F----LPR--KGPLRQRRTGIAYISNVAVRE--KFRRKG----IAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLY 168 (208)
Q Consensus 102 -~----~~~--~~~~~~~~~~~~~i~~l~v~p--~~rg~G----ig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y 168 (208)
. ++. .+.......+.++...++|++ .-+..| ++..|+.-+++++.+.|++.|+..+.. ...+.+
T Consensus 77 ~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~---~meril 153 (209)
T COG3916 77 YMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDT---GMERIL 153 (209)
T ss_pred chhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEch---HHHHHH
Confidence 1 010 112234456899999998886 333322 377899999999999999999998887 888999
Q ss_pred hhCCCeEEec
Q 028511 169 KGQGFKCVKV 178 (208)
Q Consensus 169 ~k~GF~~~~~ 178 (208)
++.||.....
T Consensus 154 ~r~Gw~~~ri 163 (209)
T COG3916 154 RRAGWPLTRI 163 (209)
T ss_pred HHcCCCeEEc
Confidence 9999987764
No 93
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00066 Score=54.96 Aligned_cols=163 Identities=11% Similarity=0.071 Sum_probs=103.6
Q ss_pred CCCCCcccCCCCCCCCCC--CCeeEEecccccHHHHHHhhhhcCCC-CCCChH----HH-----HHhhhcCCCceEEEEe
Q 028511 4 KSSDGIISNXXXXXXXXS--PEIVVREARIEDIWEVAETHCSCFFP-NYTFPL----DL-----MLRVDSRMDETFFLGS 71 (208)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~--~~i~ir~~~~~D~~~i~~l~~~~~~~-~~~~~~----~~-----~~~~~~~~~~~~~~~~ 71 (208)
.|-|+..+++..+.|..+ +-+.|||.+..|-+.+..+....+.. +...+. .+ .-.+.....+.++++.
T Consensus 658 lpvd~~ndlf~~~~p~~Pt~~~y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~d~liggllsls~~lC~v~~ 737 (891)
T KOG3698|consen 658 LPVDDDNDLFLSNKPFLPTCMFYDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFADDNLIGGLLSLSEHLCEVVD 737 (891)
T ss_pred cccCCCcceeecCCCCCccceeEeeccCccccHHHHHhhhhheeccCceeccCCCCCccccccchhheeccChhheeeee
Confidence 366777777776655432 34789999999999999888776521 111110 11 1111122334566665
Q ss_pred ecCcccccCCccccCCCcEEEEEEeccccCCCCC-----------------CCC-----------------CCCCC----
Q 028511 72 EDFKVGGLDGKFSLHRGYVAGILTVDTVADFLPR-----------------KGP-----------------LRQRR---- 113 (208)
Q Consensus 72 ~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~~-----------------~~~-----------------~~~~~---- 113 (208)
+. +++|+|+.+.......+.+ ..+ .+...
T Consensus 738 de-------------~~~i~gYa~a~~Dvt~F~rn~~i~w~~~l~EKY~~~i~p~~~g~~~~~~~e~i~~S~h~~~~~~~ 804 (891)
T KOG3698|consen 738 DE-------------GHKIVGYASAHFDVTLFSRNFLITWKEKLKEKYRGLIEPIGSGKLTDEYIEFIQNSQHPMDIEEW 804 (891)
T ss_pred cC-------------CCceeEEeeeecccchhhhceeeeeHHHHHHHhhccccccCCchhHHHHHHHHHHccCccchhhc
Confidence 54 4779998776433221100 000 01000
Q ss_pred ---------CCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 114 ---------TGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 114 ---------~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
++...+-..++..+.-.-|+.+.|++-++..++..|.....+.|..++.+-++||.++||...+..
T Consensus 805 ~~~~P~~~~~nfPa~v~~~~~~~a~D~~~~k~m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~ 879 (891)
T KOG3698|consen 805 YPKIPDQIFENFPAWVETYFGMDASDAHPMKKMIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLS 879 (891)
T ss_pred cccCcHHHHhcChHHHhhccccccccchHHHHHHHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHh
Confidence 111111134566666688999999999999999999999999999999999999999999988764
No 94
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=97.09 E-value=0.001 Score=50.76 Aligned_cols=48 Identities=29% Similarity=0.474 Sum_probs=40.9
Q ss_pred cccccChHHHHHHHHHHHHHhc-CCceEEEEeecCChhhHhhhhhCCCeEEe
Q 028511 127 KFRRKGIAKRLIAKAEAQARGW-GCRSIALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 127 ~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
.||.+|+|+.|++.++..|++. |..+|.+.... +.+++|.|+||+..|
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGV---GtR~YY~klGY~LdG 546 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVISGV---GTRNYYRKLGYELDG 546 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEecc---chHHHHHhhCeeecC
Confidence 5999999999999999999976 77777665443 668999999999877
No 95
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.0048 Score=44.28 Aligned_cols=133 Identities=15% Similarity=0.128 Sum_probs=71.0
Q ss_pred eEEecccccHHHHHHhhhh-----cCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccc
Q 028511 25 VVREARIEDIWEVAETHCS-----CFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTV 99 (208)
Q Consensus 25 ~ir~~~~~D~~~i~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~ 99 (208)
.+|+..+.-..++.+++.. +-..++..+......+.....+.++...++.. .+ -+.+.|++-+...
T Consensus 22 ~lrp~~p~~~~~v~eiId~LgklSAkaq~l~~piTsadKl~~sd~~vvy~~kd~~a-~~--------ks~l~GllKVG~K 92 (264)
T KOG4601|consen 22 DLRPYGPKRYWAVAEIIDCLGKLSAKAQGLKRPITSADKLVDSDEEVVYYIKDEKA-NG--------KSILKGLLKVGYK 92 (264)
T ss_pred hcccCCcchhHHHHHHHHHHHHhhHHHhccccccchHHHhhcCcceEEEEEeeccc-Cc--------chheeeeehccce
Confidence 3555554444555555441 12345556666666665444454444443211 10 1578888766544
Q ss_pred cCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhh
Q 028511 100 ADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKG 170 (208)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k 170 (208)
.-|........ ......-|-.++|+++.|+.|.|+.|++++++. .+..--.+.+.........|.+|
T Consensus 93 kLfl~D~~~~~-ye~e~lcILDFyVheS~QR~G~G~~lfdyMl~k---E~vephQ~a~DrPS~kLl~Fm~k 159 (264)
T KOG4601|consen 93 KLFLTDNEQNQ-YEEEALCILDFYVHESEQRSGNGFKLFDYMLKK---ENVEPHQCAFDRPSAKLLQFMEK 159 (264)
T ss_pred eEEEeccHhhh-hccCCceEEEEEeehhhhhcCchHHHHHHHHHh---cCCCchheeccChHHHHHHHHHH
Confidence 33332222211 123345666999999999999999999988653 34333333333322244555543
No 96
>PRK14852 hypothetical protein; Provisional
Probab=96.91 E-value=0.0052 Score=53.70 Aligned_cols=145 Identities=13% Similarity=0.024 Sum_probs=95.0
Q ss_pred CCeeEEec-ccccHHHHHHhhhhcCC-CCCCChH---HHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEe
Q 028511 22 PEIVVREA-RIEDIWEVAETHCSCFF-PNYTFPL---DLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTV 96 (208)
Q Consensus 22 ~~i~ir~~-~~~D~~~i~~l~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~ 96 (208)
....||.+ +.+|+.++..|...+|. .++..+. .....+...+....+++... +.++|+..+
T Consensus 27 dr~~~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~--------------~~~l~T~t~ 92 (989)
T PRK14852 27 DRPAIKIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKSY--------------HDVLCTLTH 92 (989)
T ss_pred cCcceeecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEeccC--------------CcEEEEEEE
Confidence 45778887 57889999998876652 2222111 11122223333444555433 456666655
Q ss_pred ccccC-CC--------CCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhh
Q 028511 97 DTVAD-FL--------PRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKL 167 (208)
Q Consensus 97 ~~~~~-~~--------~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~ 167 (208)
..... .. .........+...+++..++++++.|..-+--.+++.+..++...++..+.+.|.+ +=..|
T Consensus 93 ~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnP---kH~~F 169 (989)
T PRK14852 93 IPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNP---KHVKF 169 (989)
T ss_pred ecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECc---chHHH
Confidence 44322 11 11222345567889999999999888877777888888888877799999999988 44799
Q ss_pred hhh-CCCeEEecCCCCC
Q 028511 168 YKG-QGFKCVKVPEGAN 183 (208)
Q Consensus 168 y~k-~GF~~~~~~~~~~ 183 (208)
|++ +||+..+..+.+.
T Consensus 170 Y~r~l~f~~ig~~r~~p 186 (989)
T PRK14852 170 YTDIFLFKPFGEVRHYD 186 (989)
T ss_pred HHHHhCCccccccccCC
Confidence 995 5999999877663
No 97
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=96.68 E-value=0.0069 Score=45.00 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=60.9
Q ss_pred CeeEEecccccHHHHHHhhhhcCCC--CCCChHHH-----------HHhhh-cCCCceEEEEeecCcccccCCccccCCC
Q 028511 23 EIVVREARIEDIWEVAETHCSCFFP--NYTFPLDL-----------MLRVD-SRMDETFFLGSEDFKVGGLDGKFSLHRG 88 (208)
Q Consensus 23 ~i~ir~~~~~D~~~i~~l~~~~~~~--~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (208)
++.+||++..|++++.++...+-.. ..+...+. ++... .....++++.++. +.|
T Consensus 1 mlvvRP~~~aDl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDs------------etG 68 (336)
T COG3138 1 MLVVRPVERADLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDS------------ETG 68 (336)
T ss_pred CcccccccccCHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEec------------CCc
Confidence 3578999999999999998876322 12222111 11111 2233455555552 138
Q ss_pred cEEEEEEeccc----cCCCCCCCC-------------------CCCCCCCceEEEEEEeCccccccChHHHHHH
Q 028511 89 YVAGILTVDTV----ADFLPRKGP-------------------LRQRRTGIAYISNVAVREKFRRKGIAKRLIA 139 (208)
Q Consensus 89 ~ivG~~~~~~~----~~~~~~~~~-------------------~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~ 139 (208)
+++|+..+... .+|+..... ....-.+.-+++.++++|+||.-|.|+.|-+
T Consensus 69 ~VvG~saI~a~vGl~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Llsr 142 (336)
T COG3138 69 TVVGISAIEAAVGLNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLLSK 142 (336)
T ss_pred eEEeEEEEEEeeccCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhhhh
Confidence 88888776432 222211100 1223455678889999999998888876544
No 98
>PHA01733 hypothetical protein
Probab=96.54 E-value=0.022 Score=38.51 Aligned_cols=95 Identities=18% Similarity=0.096 Sum_probs=56.5
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHH-hcCCceEEEEeecCChhhH
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQAR-GWGCRSIALHCDFNNLGAT 165 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~-~~g~~~i~l~~~~~n~~a~ 165 (208)
+|+++|.+...+. . .++++.++.+.+..=.+ +-+..+.++-.++. ...+..+.-.|...|..++
T Consensus 55 nG~l~aI~Gv~~d--~----------~~~vG~pWlV~T~~v~k---~~~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hi 119 (153)
T PHA01733 55 DGSLAGVAGLVED--M----------GNRVGEIWMVCTPAIEK---NPIALLRGAKWWLPKSRNYDLLWNIVDKRNLVHR 119 (153)
T ss_pred CCcEEEEeccccc--c----------cCCCCceeEEecHHhHh---CCHHHHHHHHHHHHHhccccHHHHhHhcccHHHH
Confidence 4788888776541 1 11334444444433222 22233333333333 4478888888999999999
Q ss_pred hhhhhCCCeEEecCCCCCCCCCCCCCCchhhhhhhhcc
Q 028511 166 KLYKGQGFKCVKVPEGANWPQPKNSPDVKFKFMMKLLK 203 (208)
Q Consensus 166 ~~y~k~GF~~~~~~~~~~~~~~~~~~~~~~~~m~k~l~ 203 (208)
+|.+.+||+.....+ .+..+..+.-+.|.-.
T Consensus 120 r~Lk~lGF~f~~~~~-------~g~~~~~F~~f~~~~~ 150 (153)
T PHA01733 120 KLLRKLGFKGLRYVQ-------PGPLYLPFIEFVKKCA 150 (153)
T ss_pred HHHHHcCceeecccc-------cCcCCCchHHHHHHhc
Confidence 999999999887532 2334455666666543
No 99
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=96.50 E-value=0.087 Score=41.03 Aligned_cols=128 Identities=13% Similarity=-0.007 Sum_probs=83.4
Q ss_pred CeeEEecccccHHHHHHhhhhcCCCC--CCChHHHHHhhhcC-CC-ceEEEEe-ecCcccccCCccccCCCcEEEEEEec
Q 028511 23 EIVVREARIEDIWEVAETHCSCFFPN--YTFPLDLMLRVDSR-MD-ETFFLGS-EDFKVGGLDGKFSLHRGYVAGILTVD 97 (208)
Q Consensus 23 ~i~ir~~~~~D~~~i~~l~~~~~~~~--~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~~g~ivG~~~~~ 97 (208)
.++++. .+|++...+++...+... ...+.++++.+... .. ...+++. .+ |++||.+.+.
T Consensus 151 Gv~v~~--~~~l~~F~~l~~~t~~r~g~p~~~~~~f~~l~~~~~~~~~l~~a~~~~--------------g~~va~~l~~ 214 (330)
T TIGR03019 151 GLTVTV--DGDLDRFYDVYAENMRDLGTPVFSRRYFRLLKDVFGEDCEVLTVRLGD--------------GVVASAVLSF 214 (330)
T ss_pred CeEEEE--CCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcccCEEEEEEEeCC--------------CCEEEEEEEE
Confidence 355554 456888888777554321 12445555554322 22 2233444 33 7777775543
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEe
Q 028511 98 TVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
... +..+....+..+++++.+-+..|+-++++++.++|++...+.....|.+..+|=++.||+.+.
T Consensus 215 ~~~--------------~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G~~~~~ 280 (330)
T TIGR03019 215 YFR--------------DEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWGFEPQP 280 (330)
T ss_pred EeC--------------CEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCCCeecc
Confidence 311 123332446689999999999999999999999999999998766566677777889999876
Q ss_pred cCC
Q 028511 178 VPE 180 (208)
Q Consensus 178 ~~~ 180 (208)
..-
T Consensus 281 l~~ 283 (330)
T TIGR03019 281 LHY 283 (330)
T ss_pred ceE
Confidence 554
No 100
>PHA00432 internal virion protein A
Probab=96.48 E-value=0.0062 Score=40.42 Aligned_cols=30 Identities=13% Similarity=-0.054 Sum_probs=27.2
Q ss_pred CCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 149 GCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 149 g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
.+..+.-.|...|..+++|.+.+||+....
T Consensus 92 ~yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 92 QYPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hhhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 388899999999999999999999998765
No 101
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=96.45 E-value=0.017 Score=36.37 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=37.4
Q ss_pred CceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChh
Q 028511 115 GIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLG 163 (208)
Q Consensus 115 ~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~ 163 (208)
...+|+.++|.+..||.|+|..+++.+.+. .+.+...+.++|+.
T Consensus 33 ~~~yLdKfaV~~~~~g~gvad~vf~~i~~d-----~~~L~Wrsr~~n~~ 76 (99)
T cd04264 33 GVPYLDKFAVSSSAQGEGTSDALWRRLRRD-----FPKLFWRSRKTNPI 76 (99)
T ss_pred CceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEeCCCCcc
Confidence 578999999999999999999999987655 45688888888863
No 102
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=96.37 E-value=0.033 Score=39.23 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=37.5
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCC
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGC 150 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~ 150 (208)
-.++||..=.... .....+.-+.|.|.||++|+|+.|++..-+.++..|.
T Consensus 65 ~h~vGyFSKEk~s-------------~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~~ 114 (188)
T PF01853_consen 65 FHIVGYFSKEKES-------------WDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREGK 114 (188)
T ss_dssp EEEEEEEEEESS--------------TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTTS
T ss_pred ceeEEEEEEEecc-------------cCCeeEeehhhcchhhhcchhhhhhhhHHHHhhccCc
Confidence 4689987754321 1246777899999999999999999999998887653
No 103
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=96.36 E-value=0.15 Score=33.75 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=46.8
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCC
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNN 161 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n 161 (208)
+|++||...+...++- .-.| -..-+|++..+.+|+-.+-..++.|++.|.+.+++.-...+
T Consensus 47 ~~kLiav~v~D~l~~g-------------lSaV-Y~fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YLGY~I~~ 107 (128)
T PF04377_consen 47 DGKLIAVAVVDILPDG-------------LSAV-YTFYDPDYSKRSLGTYSILREIELARELGLPYYYLGYWIHG 107 (128)
T ss_pred CCeEEEEEEeecccch-------------hhhe-eeeeCCCccccCcHHHHHHHHHHHHHHcCCCEEeeCeEeCC
Confidence 4899999887654331 1112 23459999999999999999999999999999999855433
No 104
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.34 E-value=0.013 Score=49.08 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=29.0
Q ss_pred ceEEEEEEeCccccccChHHHHHHHHHHHHHhc
Q 028511 116 IAYISNVAVREKFRRKGIAKRLIAKAEAQARGW 148 (208)
Q Consensus 116 ~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~ 148 (208)
-+.|-+++|+|+|++.|+|++.++-+.++...+
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y~eG~ 646 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDYFEGK 646 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHHHhcc
Confidence 467889999999999999999999999887644
No 105
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=96.32 E-value=0.28 Score=36.29 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=53.3
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEE--EEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhh
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISN--VAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGA 164 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a 164 (208)
+|++||.+.+...++ .|.. .+-+|++-.+++|+..+-..++.|++.|.+.+++.-...+-
T Consensus 152 ~g~LiaVav~D~l~d----------------~lSAVY~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~YLGY~I~~c-- 213 (240)
T PRK01305 152 DGKLVAVAVTDVLDD----------------GLSAVYTFYDPDEEHRSLGTFAILWQIELAKRLGLPYVYLGYWIKGS-- 213 (240)
T ss_pred CCeEEEEEEEeccCC----------------ceeeEEEeeCCCccccCCHHHHHHHHHHHHHHcCCCeEeeeEEECCC--
Confidence 489999988865433 2223 35599999999999999999999999999999998665443
Q ss_pred HhhhhhCCCeEEec
Q 028511 165 TKLYKGQGFKCVKV 178 (208)
Q Consensus 165 ~~~y~k~GF~~~~~ 178 (208)
.++==|.-|++...
T Consensus 214 ~kM~YK~~f~P~E~ 227 (240)
T PRK01305 214 RKMNYKARFRPLEI 227 (240)
T ss_pred CcccccccCCccee
Confidence 22222444554444
No 106
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=95.88 E-value=0.02 Score=43.13 Aligned_cols=63 Identities=21% Similarity=0.180 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCCCCCCCCCCCCCchhhhhhhhccC
Q 028511 132 GIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEGANWPQPKNSPDVKFKFMMKLLKA 204 (208)
Q Consensus 132 Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~~~~~~~~~~~~~~~~m~k~l~~ 204 (208)
|-...++..+.+.|++.|+.+|.+.+... ....|++.||...+..+.+. .+.+..+|.|-|.+
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~---~~~~~~~~g~~~e~~i~~~f-------~g~~~~~~~~~~~~ 83 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGS---DKPLFEERGYLEEAKIPGYF-------NGHDAYFMSKYLDE 83 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHH---HHHHHHHCCCeEEEeccccc-------CCCceEEEEEcCch
Confidence 44788999999999999999999999884 48999999999999987663 22356888777744
No 107
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=95.87 E-value=0.3 Score=32.65 Aligned_cols=125 Identities=13% Similarity=0.144 Sum_probs=66.0
Q ss_pred eeEEecccccHHHHHHhhhhcCCCC---C------------CChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCC
Q 028511 24 IVVREARIEDIWEVAETHCSCFFPN---Y------------TFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRG 88 (208)
Q Consensus 24 i~ir~~~~~D~~~i~~l~~~~~~~~---~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (208)
|.+|++.+.|++.+..+-....... + +.+..-... .....+.|++.+. +|
T Consensus 1 M~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrf--y~RsgHSFvA~~e-------------~~ 65 (161)
T PF09390_consen 1 MRYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRF--YERSGHSFVAEDE-------------GG 65 (161)
T ss_dssp -EEE---GGGHHHHHHC--------------------STTS---HHHHHH--HHCCS--EEEE-E-------------TT
T ss_pred CcccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhh--hhccCCcEEEEcc-------------CC
Confidence 4689999999999988844331110 0 111111111 2245677888733 28
Q ss_pred cEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhh
Q 028511 89 YVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLY 168 (208)
Q Consensus 89 ~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y 168 (208)
++.||+...... ..+..++.+..+.+.|. +......-|+.++...+-..|+-.+.+...+ ....-.
T Consensus 66 ~~~GfvLAQaVW----------QGdrptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p---~l~~A~ 131 (161)
T PF09390_consen 66 ELQGFVLAQAVW----------QGDRPTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYDAGVYEVHLHLDP---ELEAAA 131 (161)
T ss_dssp EEEEEEEEEEEE-----------SSSEEEEEEEE---EE-SSHHHHHHHHHHHHHHHHHTT-SEEEE---T---HHHHHH
T ss_pred ceeeeeehhHHh----------cCCCceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhccceEEEEeeCCH---HHHHHH
Confidence 999998764311 22334677777766654 5567888899999999999999999998887 455556
Q ss_pred hhCCCeEEe
Q 028511 169 KGQGFKCVK 177 (208)
Q Consensus 169 ~k~GF~~~~ 177 (208)
..-||...+
T Consensus 132 ~a~~~~~~~ 140 (161)
T PF09390_consen 132 RAEGFRLGG 140 (161)
T ss_dssp HHTT----S
T ss_pred hhcccccCC
Confidence 677887655
No 108
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=95.40 E-value=0.092 Score=39.44 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=37.7
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcC
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWG 149 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g 149 (208)
..+|||..=.... .....+.-+.|.|.||++|+|+.|++..-+..+..|
T Consensus 140 ~h~vGYFSKEK~s-------------~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 140 SHIVGYFSKEKVS-------------AEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred cEEEEEeceeccc-------------cCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 5789986543211 123567789999999999999999999999888765
No 109
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=95.27 E-value=0.067 Score=33.72 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=38.5
Q ss_pred CceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhh
Q 028511 115 GIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLY 168 (208)
Q Consensus 115 ~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y 168 (208)
...+|..++|.+..||+|+|..|++.+.+. .+.+...+.++|+.. ++|
T Consensus 33 ~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d-----~~~L~Wrsr~~n~~n-~Wy 80 (99)
T cd04265 33 GVPYLDKFAVSSSAQGEGTGEALWRRLRRD-----FPKLFWRSRSTNPIN-PWY 80 (99)
T ss_pred CceEEEEEEEchhhhhcChHHHHHHHHHhh-----CCceEEEeCCCCccc-ceE
Confidence 478999999999999999999999987655 345778888877633 443
No 110
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=95.19 E-value=0.17 Score=39.15 Aligned_cols=115 Identities=11% Similarity=0.076 Sum_probs=68.4
Q ss_pred CCCCCeeEEecccc---cHHHHHHhhhhcCCCCC------CChHHHHHhhhcCC---CceEEEEeecCcccccCCccccC
Q 028511 19 XXSPEIVVREARIE---DIWEVAETHCSCFFPNY------TFPLDLMLRVDSRM---DETFFLGSEDFKVGGLDGKFSLH 86 (208)
Q Consensus 19 ~~~~~i~ir~~~~~---D~~~i~~l~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
.....+....+..+ |+.++..++++.+.++- .+..++.......+ .++.+..... .
T Consensus 76 ~lp~gf~W~tldv~~~~~l~el~~lL~enyVEd~~~m~rf~Ys~eFl~Wal~~pg~~~~WHiGVRv~------------~ 143 (421)
T KOG2779|consen 76 SLPTGFRWETLDVSDFKDLEELYNLLNENYVEDDDSMFRFDYSPEFLKWALQPPGWKKEWHIGVRVK------------S 143 (421)
T ss_pred cCCCCceeeccCCccHhHHHHHHhhcccCCCCccccchhhhccHHHHHhhhcCCCCccceEEEEEEe------------c
Confidence 33444444444444 45566666666554322 23345544443222 2344444332 1
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCc
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCR 151 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~ 151 (208)
..++|||+...+..- ...+.....+.|..++|+.+.|+++++--|++++.+.+.-.|+-
T Consensus 144 s~kLVaFIsaiP~~i------rvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIf 202 (421)
T KOG2779|consen 144 SKKLVAFISAIPATI------RVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIF 202 (421)
T ss_pred CCceEEEEeccccEE------EEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhh
Confidence 369999988754221 11122234789999999999999999999999999988766543
No 111
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.75 E-value=0.017 Score=45.77 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=48.1
Q ss_pred CCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEE-----eecCChhhHhhhhhCCCeEEe
Q 028511 113 RTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALH-----CDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 113 ~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~-----~~~~n~~a~~~y~k~GF~~~~ 177 (208)
+...+.|..+.|+|+||+-|+|..-+..+.++..++-.....-. +...-..-..|+++.||...-
T Consensus 238 ntaaariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 238 NTAAARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred hhhhhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 45567899999999999999999999999999998765543321 111111224799999999764
No 112
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=94.58 E-value=0.059 Score=37.16 Aligned_cols=120 Identities=15% Similarity=0.078 Sum_probs=73.8
Q ss_pred cccccHHHHHHhhhhcCCCCCCC---hHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCCCC
Q 028511 29 ARIEDIWEVAETHCSCFFPNYTF---PLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFLPR 105 (208)
Q Consensus 29 ~~~~D~~~i~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~~ 105 (208)
++.+|..++.+++..+|.+.-.+ +.+--.......++.-.+..+...+++..+. +--|+.+.
T Consensus 15 L~l~dH~eLa~ffrktYgptg~fnakpFeg~RSWAGARPElRaIgyD~~GvaAH~G~-------LRRFIkVG-------- 79 (196)
T PF02474_consen 15 LQLADHVELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIGYDSRGVAAHMGL-------LRRFIKVG-------- 79 (196)
T ss_pred cchhhhHHHHHHHHHhcCCCCcccCccCCcccccccCCceeEEEeecCchHHHHHHH-------HHHHhccC--------
Confidence 44567888999999887654322 1111223333444555555554333322211 00011110
Q ss_pred CCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCC
Q 028511 106 KGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQG 172 (208)
Q Consensus 106 ~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~G 172 (208)
.-+--.++++.++|.|+.+|.||+..| ..+.-.+++.|+......|.. +..+.+++++
T Consensus 80 -----~vDlLVaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~---al~~Hv~R~~ 137 (196)
T PF02474_consen 80 -----EVDLLVAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRH---ALRNHVERLC 137 (196)
T ss_pred -----CcceeEEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchH---HHHHHHHHHh
Confidence 011125889899999999999999976 688888888999988888887 6677777665
No 113
>PLN03239 histone acetyltransferase; Provisional
Probab=94.43 E-value=0.18 Score=38.99 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=29.9
Q ss_pred eEEEEEEeCccccccChHHHHHHHHHHHHHhcCC
Q 028511 117 AYISNVAVREKFRRKGIAKRLIAKAEAQARGWGC 150 (208)
Q Consensus 117 ~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~ 150 (208)
..+.-+.|.|.||++|+|+.|++..-+..+..|.
T Consensus 214 ~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg~ 247 (351)
T PLN03239 214 YNLACILTFPAHQRKGYGRFLIAFSYELSKKEEK 247 (351)
T ss_pred CceEEEEecChhhhcchhhhhHhhhhHhhhhcCC
Confidence 4677899999999999999999999998887653
No 114
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=94.42 E-value=1.2 Score=31.61 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=73.6
Q ss_pred eeEEecccccHHHHHHhhhhcCCCCCC----C-hHHHHHhhhcC-CCceEEEEeecCcccccCCccccCCCcEEEEEEec
Q 028511 24 IVVREARIEDIWEVAETHCSCFFPNYT----F-PLDLMLRVDSR-MDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVD 97 (208)
Q Consensus 24 i~ir~~~~~D~~~i~~l~~~~~~~~~~----~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~ 97 (208)
--+|+++++|++++.+++++.... +. . .++....+... .--+.+|.+++ +|+|..++.+.
T Consensus 29 ~glR~m~~~Dv~~v~~Ll~~yl~~-f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~-------------~~~ITDf~SFY 94 (190)
T PF02799_consen 29 PGLRPMEEKDVPQVTKLLNKYLKK-FDLAPVFSEEEVKHWFLPRKNVVYSYVVEDP-------------DGKITDFFSFY 94 (190)
T ss_dssp TTEEE--GGGHHHHHHHHHHHHTT-SSEEEE--HHHHHHHHS-BTTTEEEEEEEET-------------TSEEEEEEEEE
T ss_pred CccccCchhhHHHHHHHHHHHHHh-cccccccCHHHHHhhcccCCCeEEEEEEecC-------------CCceeeEEEEe
Confidence 348999999999999998865432 22 1 12333333322 22345566654 36777777665
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEE
Q 028511 98 TVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCV 176 (208)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~ 176 (208)
..+.-. ........-..+++ ..++... -=-++|+..++-.|++.|+...-+.-.-+|. .|.+.+.|..-
T Consensus 95 ~Lpstv--i~~~k~~~l~aAY~-fY~~~~~----~~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~---~fL~~lKFg~G 163 (190)
T PF02799_consen 95 SLPSTV--IGNPKHKTLKAAYS-FYYVATS----TRLKELMNDALILAKNEGFDVFNALDLMDNS---SFLEDLKFGPG 163 (190)
T ss_dssp EEEEEE--SSSSSSSEEEEEEE-EEEEESS----SHHHHHHHHHHHHHHHTTESEEEEESTTTGG---GTTTTTT-EEE
T ss_pred ecceee--cCCCCccceeeeee-eeeeecC----CCHHHHHHHHHHHHHHcCCCEEehhhhccch---hhHhhCCccCC
Confidence 433210 00111111234444 3344333 2356788888889999999988777777775 78899999843
No 115
>PTZ00064 histone acetyltransferase; Provisional
Probab=94.24 E-value=0.17 Score=40.99 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=37.9
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCC
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGC 150 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~ 150 (208)
-.+|||..=.... .....+.-+.|.|.||++|+|+.|++..-+..+..|.
T Consensus 369 ~HiVGYFSKEK~S-------------~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEgk 418 (552)
T PTZ00064 369 CHIVGYFSKEKVS-------------LLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEGK 418 (552)
T ss_pred cEEEEEecccccC-------------cccCceEEEEecchhhhcchhhhhhhhhhhhhhhcCC
Confidence 4788886543211 1234677899999999999999999999998887653
No 116
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=93.36 E-value=1.6 Score=33.33 Aligned_cols=83 Identities=20% Similarity=0.259 Sum_probs=63.7
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhc---------C-CceEEEEe
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGW---------G-CRSIALHC 157 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~---------g-~~~i~l~~ 157 (208)
+.+|+.+.+.+..+... .+.-...|.++.|..=|..-|+-..|++++.-..++. | --.+.+.+
T Consensus 178 etPIAiisl~~~~~~St-------~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d~ 250 (304)
T PF11124_consen 178 ETPIAIISLVPNKDQST-------KENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVDV 250 (304)
T ss_pred CCceEEEEeccccccCC-------CceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEEe
Confidence 58888888876544221 1234688999999999999999999999997666542 1 11355667
Q ss_pred ecCChhhHhhhhhCCCeEEe
Q 028511 158 DFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 158 ~~~n~~a~~~y~k~GF~~~~ 177 (208)
...+....++.++.||....
T Consensus 251 YSFD~~~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 251 YSFDKDMKKTLKKKGFKKIS 270 (304)
T ss_pred eeccHHHHHHHHHCCCeeee
Confidence 88888999999999999988
No 117
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=93.30 E-value=2 Score=30.12 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=64.1
Q ss_pred cHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCCCCCCCCCCC
Q 028511 33 DIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFLPRKGPLRQR 112 (208)
Q Consensus 33 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~~~~~~~~~ 112 (208)
|.+.|.+++..++... .....+..++.. .....++... =+.++.+..... ..
T Consensus 33 d~~kL~~ll~~sf~~~-~~v~~yl~~l~~-~~~~iy~d~~---------------y~~~AIVt~e~~-----------~~ 84 (170)
T PF04768_consen 33 DLDKLRALLERSFGGK-LDVDHYLDRLNN-RLFKIYVDED---------------YEGAAIVTPEGP-----------DS 84 (170)
T ss_dssp -HHHHHHHHHHHSTSS-SBHTTHHHHHHT-S-SEEEEETT---------------SSEEEEEEEE-S-----------CT
T ss_pred CHHHHHHHHHhccccc-ccHHHHHHHhhc-cceEEEEeCC---------------ceEEEEEEecCC-----------CC
Confidence 8999999999998322 222355555532 2223333221 122333332111 11
Q ss_pred CCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhh-hhC-CCeE
Q 028511 113 RTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLY-KGQ-GFKC 175 (208)
Q Consensus 113 ~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y-~k~-GF~~ 175 (208)
....++|..++|.+..||.|++..++..+.+. ++.+...+..+|+ ..++| ++. |+-.
T Consensus 85 ~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d-----~p~L~Wrsr~~n~-~~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 85 NGPVPYLDKFAVSKSAQGSGVADNVFNAIRKD-----FPKLFWRSREDNP-NNKWYFERSDGSFK 143 (170)
T ss_dssp CTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH------SSEEEEEETT-T-THHHHHHH-SEEEE
T ss_pred CCCCeEEEEEEecchhhhcCHHHHHHHHHHHh-----ccceEEEecCCCC-cccEEEEeeEEEEE
Confidence 23579999999999999999999999988544 3448888888885 55666 333 6544
No 118
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=93.26 E-value=0.4 Score=30.33 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=32.9
Q ss_pred cEEEEEEeccccCC------CCC----CCCCCCCCCCceEEEEEEeCccccccChHHHHH
Q 028511 89 YVAGILTVDTVADF------LPR----KGPLRQRRTGIAYISNVAVREKFRRKGIAKRLI 138 (208)
Q Consensus 89 ~ivG~~~~~~~~~~------~~~----~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll 138 (208)
++||++.+....+. +.. ...........++|..++|+|+||++.....|+
T Consensus 41 ~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 41 EVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 48888877543321 110 011122334899999999999999998887775
No 119
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=93.09 E-value=0.21 Score=40.17 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=37.2
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcC
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWG 149 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g 149 (208)
-.+|||..=.... .....+.-+.|.|.||++|+|+.|++..-+..+..|
T Consensus 291 ~h~vGyFSKEk~s-------------~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 291 CHMVGYFSKEKHS-------------EEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred cEEEEEecccccC-------------cCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 4789986543211 123467789999999999999999999988887665
No 120
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.67 Score=34.12 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=47.2
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCC
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNN 161 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n 161 (208)
.|++|+.......++ -...--..-+|++..+++|+.++-.-+.+|++.|.+.++|.-...+
T Consensus 159 ~G~LvAVavtDvL~d--------------GlSsVY~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGYwI~~ 219 (253)
T COG2935 159 EGKLVAVAVTDVLPD--------------GLSSVYTFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGYWIKG 219 (253)
T ss_pred CCcEEEEEeeecccC--------------cceeEEEEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEEEECC
Confidence 489999887765443 1111133559999999999999999999999999999999866543
No 121
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=91.43 E-value=0.49 Score=37.38 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=28.7
Q ss_pred ceEEEEEEeCccccccChHHHHHHHHHHHHHhcC
Q 028511 116 IAYISNVAVREKFRRKGIAKRLIAKAEAQARGWG 149 (208)
Q Consensus 116 ~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g 149 (208)
...+.-+.|.|.||++|+|+.|++..-+..+..|
T Consensus 260 ~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E~ 293 (396)
T KOG2747|consen 260 NYNLACILTLPPYQRKGYGKLLIDFSYELSRREG 293 (396)
T ss_pred ccceeeeeecChhhhcccchhhhhhhhhhhcccC
Confidence 4567788999999999999999999888776543
No 122
>PRK00756 acyltransferase NodA; Provisional
Probab=90.10 E-value=1.1 Score=30.82 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=64.6
Q ss_pred cccccHHHHHHhhhhcCCCCCCCh---HHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCCCC
Q 028511 29 ARIEDIWEVAETHCSCFFPNYTFP---LDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFLPR 105 (208)
Q Consensus 29 ~~~~D~~~i~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~~ 105 (208)
++..|.-++.+++..+|.+.-.+. .+--.......++.-.+..+...+++..+ -+--|+-+..
T Consensus 15 L~ladH~eLaeFfr~tYgptGafnakpFeG~RSWAGARPElRaIgyD~~GVaAH~G-------~LRRFIkVg~------- 80 (196)
T PRK00756 15 LELSDHAELAEFFRKTYGPTGAFNAKPFEGGRSWAGARPELRAIAYDSHGVAAHMG-------LLRRFIKVGE------- 80 (196)
T ss_pred cccchhHHHHHHHHHhcCCcccccccccCcCcccccCCceeEEEeecCccHhHhHH-------HHhhhheecc-------
Confidence 345677789999998875533221 11112223334455555555433332221 1111111111
Q ss_pred CCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 106 KGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 106 ~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
-+--.++++.+.|.|+..|.||+..+ ..+.-.+++.|+....-.|..
T Consensus 81 ------vDlLVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtVR~ 127 (196)
T PRK00756 81 ------VDLLVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTVRH 127 (196)
T ss_pred ------cceeEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccchH
Confidence 11136889889999999999998876 677778888899977777766
No 123
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=90.05 E-value=1.9 Score=33.11 Aligned_cols=108 Identities=13% Similarity=0.000 Sum_probs=58.1
Q ss_pred eeEEec---ccccHHHHHHhhhhcCCCCCCChHHHH----HhhhcCCCceEEEEee-cCcccccCCccccCCCcEEEEEE
Q 028511 24 IVVREA---RIEDIWEVAETHCSCFFPNYTFPLDLM----LRVDSRMDETFFLGSE-DFKVGGLDGKFSLHRGYVAGILT 95 (208)
Q Consensus 24 i~ir~~---~~~D~~~i~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~ivG~~~ 95 (208)
+.+.+. ++++.++|.++..+...........+. ... .......+++.. + |+++||+.
T Consensus 133 ~~~~~~~~~~~~~~~el~~i~~~W~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~d--------------gki~af~~ 197 (299)
T PF09924_consen 133 FEVVPIPELDPELRDELLEISDEWLKEKERPERGFIMGALEHF-DELGLRGFVARVAD--------------GKIVAFAI 197 (299)
T ss_dssp -EEEE-----GGGHHHHHHHHHHHHHHCTHHHHHHHHHHHHTH-HHHT-EEEEEEE-T--------------TEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHhcCchhHHHHHhccccch-hhcCceEEEEEECC--------------CcEEEEEE
Confidence 456666 688888888886653322210111111 111 122345556666 5 99999999
Q ss_pred eccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 96 VDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
..+... .+.+.++-..-+++ --+|+-..|+..+++.+++.|+..+.|...+
T Consensus 198 ~~~~~~------------~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ap 248 (299)
T PF09924_consen 198 GSPLGG------------RDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGFAP 248 (299)
T ss_dssp EEEEE-------------TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE-----
T ss_pred EEEccC------------CccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccccc
Confidence 876331 23455555555565 4579999999999999998899999876544
No 124
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=89.20 E-value=3 Score=32.02 Aligned_cols=109 Identities=9% Similarity=0.077 Sum_probs=67.8
Q ss_pred EEecccccHHHHHHhhhhcCCCCCC------ChHHHHHhhhcCCC---ceEEEEeecCcccccCCccccCCCcEEEEEEe
Q 028511 26 VREARIEDIWEVAETHCSCFFPNYT------FPLDLMLRVDSRMD---ETFFLGSEDFKVGGLDGKFSLHRGYVAGILTV 96 (208)
Q Consensus 26 ir~~~~~D~~~i~~l~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~ 96 (208)
|-......++++..++.+.+..+.. +..++.+.....+. .+++.....+ ..++|||+..
T Consensus 84 idv~N~~ql~dv~~lL~eNYVED~~ag~rf~Y~~EFl~Wal~~pg~kK~whigvRvk~------------t~klVaFIsa 151 (451)
T COG5092 84 IDVANKKQLEDVFVLLEENYVEDIYAGHRFRYSVEFLQWALDGPGGKKRWHIGVRVKG------------TQKLVAFISA 151 (451)
T ss_pred EeccccchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhcCCCCceeeEEEEEEcc------------cceeEEEEec
Confidence 4445567788888888876644322 33344444433222 3344443331 2588998876
Q ss_pred ccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCce
Q 028511 97 DTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRS 152 (208)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~ 152 (208)
.+..-- .++.....+.+..++|+.+.|++.+.--|+..+.+.+...|+-+
T Consensus 152 ~p~~v~------vRgK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~iw~ 201 (451)
T COG5092 152 KPHLVS------VRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDGIWR 201 (451)
T ss_pred ceeEEE------EcccccccceEEEEEEehhhhhCccchHHHHHHHHhhhhhhhHH
Confidence 542210 11112247899999999999999999999999999887665543
No 125
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=89.04 E-value=3.6 Score=30.45 Aligned_cols=33 Identities=36% Similarity=0.337 Sum_probs=28.3
Q ss_pred CCceEEEEEEeCccccccChHHHHHHHHHHHHH
Q 028511 114 TGIAYISNVAVREKFRRKGIAKRLIAKAEAQAR 146 (208)
Q Consensus 114 ~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~ 146 (208)
.-.+.|..++|.+..|++|+++.|++.+.....
T Consensus 181 ~~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~~ 213 (257)
T KOG3014|consen 181 PAICGISRIWVSSLRRRKGIASLLLDVARCNFV 213 (257)
T ss_pred CcEeeeEEEEeehhhhhhhhHHHHHHHHHHhhh
Confidence 457889999999999999999999998876443
No 126
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=88.84 E-value=2.2 Score=27.38 Aligned_cols=49 Identities=29% Similarity=0.336 Sum_probs=38.9
Q ss_pred CCceEEEEEEeCccccc-cChHHHHHHHHHHHHHhcCCce-EEEEeecCChhhHhhh
Q 028511 114 TGIAYISNVAVREKFRR-KGIAKRLIAKAEAQARGWGCRS-IALHCDFNNLGATKLY 168 (208)
Q Consensus 114 ~~~~~i~~l~v~p~~rg-~Gig~~ll~~~~~~~~~~g~~~-i~l~~~~~n~~a~~~y 168 (208)
...++|..+.|.+.-|| .|++..++..+.+ .... +...+..+|+. .++|
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~-----~fp~~L~Wrsr~~n~~-n~Wy 87 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAMLD-----GFPNELIWRSRKDNPV-NKWY 87 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHHH-----cCCCceEEEeCCCCcc-cceE
Confidence 45789999999999997 8999999998766 3454 88888888863 3554
No 127
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=88.68 E-value=5.6 Score=31.13 Aligned_cols=131 Identities=14% Similarity=0.047 Sum_probs=71.6
Q ss_pred CeeEEecccccHHHHHHhhhhcCCCCC---CC-hHHHHHhhhcCCC-ceEEEEeecCcccccCCccccCCCcEEEEEEec
Q 028511 23 EIVVREARIEDIWEVAETHCSCFFPNY---TF-PLDLMLRVDSRMD-ETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVD 97 (208)
Q Consensus 23 ~i~ir~~~~~D~~~i~~l~~~~~~~~~---~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~ 97 (208)
.--+|+++++|.+++.+|+.+....-. .. ..+....+..... -..++++.. +|+|.+|+.+.
T Consensus 260 T~G~R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp-------------~g~ITDF~SFy 326 (421)
T KOG2779|consen 260 TPGLREMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESP-------------NGKITDFCSFY 326 (421)
T ss_pred CCCcccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECC-------------CCcccceeeEE
Confidence 345899999999999999886432111 11 1122222222111 223334331 37777777765
Q ss_pred cccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEE
Q 028511 98 TVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCV 176 (208)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~ 176 (208)
..+.- -.+......-..+|+ -..+..+ -=-.+|+..++-.++..|+....+.-.-+|. .|.++++|-.-
T Consensus 327 ~lpsT--v~~~~~~ktl~aaYl-yY~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN~---~fl~~LkFg~G 395 (421)
T KOG2779|consen 327 SLPST--VMGNPKYKTLQAAYL-YYNVATS----TPLLQLVNDALILAKQKGFDVFNALDLMENE---SFLKDLKFGPG 395 (421)
T ss_pred ecccc--ccCCCCcceeeeeeE-EEeccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhhh---hHHHhcCcCcC
Confidence 43321 111112222233444 3334333 1245678888888888899977766666664 78888888654
No 128
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=88.42 E-value=2 Score=33.80 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=65.9
Q ss_pred ccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeecCcccccCCccccCCCcEEEEEEeccccCCCCCCCCCCC
Q 028511 32 EDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSEDFKVGGLDGKFSLHRGYVAGILTVDTVADFLPRKGPLRQ 111 (208)
Q Consensus 32 ~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ivG~~~~~~~~~~~~~~~~~~~ 111 (208)
=|++.+..+++.+|......+ .+..++ ..+-...+++.+ --|.+.+... ..
T Consensus 345 Ldl~r~q~LI~~SFkRTLd~h-~y~~r~-~~~La~~iVsgd-----------------Y~g~aIlTye----------gs 395 (495)
T COG5630 345 LDLPRLQHLIQSSFKRTLDPH-YYETRI-NTPLARAIVSGD-----------------YRGAAILTYE----------GS 395 (495)
T ss_pred cCcHHHHHHHHHHHhhccCHH-HHHHhc-cCcceeEEeecc-----------------ceeeEEEEee----------cc
Confidence 367788888888876654433 333433 333334444432 1222222211 11
Q ss_pred CCCCceEEEEEEeCccccc-cChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhh--hhCCCeEE
Q 028511 112 RRTGIAYISNVAVREKFRR-KGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLY--KGQGFKCV 176 (208)
Q Consensus 112 ~~~~~~~i~~l~v~p~~rg-~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y--~k~GF~~~ 176 (208)
.+.+..|++.++|.+..|| -||+..++.-+.+..-. .+.+....+|+ +.+|| ++-|+-..
T Consensus 396 ~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e~fP~----eL~WRSR~~N~-vNkwYf~rSvg~lk~ 458 (495)
T COG5630 396 GENNVPYLDKFAVLDDAQGSEGISDAVFNIMREEFPN----ELFWRSRHNNQ-VNKWYFARSVGYLKQ 458 (495)
T ss_pred CCCCCcceeeeeccccccccchHHHHHHHHHHHhCcH----hhhhhhcccCc-chheeeehhhehhhc
Confidence 2346789999999999999 99999999877766543 25555666664 55565 34455443
No 129
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=87.81 E-value=1 Score=35.22 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=27.5
Q ss_pred ceEEEEEEeCccccccChHHHHHHHHHHHHHh
Q 028511 116 IAYISNVAVREKFRRKGIAKRLIAKAEAQARG 147 (208)
Q Consensus 116 ~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~ 147 (208)
...|..+.+.|.||++|+|..|++.+......
T Consensus 217 R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~ 248 (403)
T KOG2696|consen 217 RPRISQMLILPPFQGKGLGSQLYEAIARDYLE 248 (403)
T ss_pred hhhhheeEEeccccCCchHHHHHHHHHHhhcc
Confidence 46778899999999999999999999865544
No 130
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=87.78 E-value=2 Score=26.17 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=25.2
Q ss_pred CceEEEEeecCChhhHhhhhhCCCeEEe
Q 028511 150 CRSIALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 150 ~~~i~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
+..++-.|...|+..++|.+.+|++...
T Consensus 56 Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 56 YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 7779999999999999999999998654
No 131
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=86.78 E-value=9.9 Score=30.31 Aligned_cols=129 Identities=12% Similarity=0.046 Sum_probs=76.7
Q ss_pred CeeEEec-----ccccHHHHHHhhhhcCCCCCCCh---HHHHHhhhcCCC-ceE-EEEeecCcccccCCccccCCCcEEE
Q 028511 23 EIVVREA-----RIEDIWEVAETHCSCFFPNYTFP---LDLMLRVDSRMD-ETF-FLGSEDFKVGGLDGKFSLHRGYVAG 92 (208)
Q Consensus 23 ~i~ir~~-----~~~D~~~i~~l~~~~~~~~~~~~---~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~g~ivG 92 (208)
.+.++.+ ++++++.+..++..++...+..+ .+++..+..... ... +++..+ |++||
T Consensus 199 Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~--------------g~~Va 264 (370)
T PF04339_consen 199 GIRIRTLTGDEITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRD--------------GQPVA 264 (370)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEEC--------------CeEEE
Confidence 4566654 45667888888887776554422 355655554433 333 344444 89999
Q ss_pred EEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCC
Q 028511 93 ILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQG 172 (208)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~G 172 (208)
+....... ++.+-.-.+...++.+.-. ....=+.+++|-++|++.+....-.+++ ...|
T Consensus 265 ~aL~l~~~--------------~~LyGRYwG~~~~~~~LHF-e~cYYq~Ie~aI~~Gl~~f~~GaqGEHK------~~RG 323 (370)
T PF04339_consen 265 FALCLRGD--------------DTLYGRYWGCDEEIPFLHF-ELCYYQGIEYAIEHGLRRFEPGAQGEHK------IARG 323 (370)
T ss_pred EEEEEEeC--------------CEEEEeeecccccccCcch-HHHHHHHHHHHHHcCCCEEECCcchhHH------HHcC
Confidence 87664422 2344434444555554432 2334467889999999987776443222 4679
Q ss_pred CeEEecCCCCCCCC
Q 028511 173 FKCVKVPEGANWPQ 186 (208)
Q Consensus 173 F~~~~~~~~~~~~~ 186 (208)
|+++.+...+...+
T Consensus 324 f~P~~t~S~H~~~~ 337 (370)
T PF04339_consen 324 FEPVPTYSAHWIAD 337 (370)
T ss_pred CccccceeeeeeCC
Confidence 99998776654433
No 132
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=84.00 E-value=0.93 Score=35.10 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=24.9
Q ss_pred ceEEEEEEeCccccccChHHHHHHHHHHHHH
Q 028511 116 IAYISNVAVREKFRRKGIAKRLIAKAEAQAR 146 (208)
Q Consensus 116 ~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~ 146 (208)
...+.-+-|.|.||++|+|+.|++..-...+
T Consensus 262 ~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 262 DYNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred cCceEEEEecChhHhcccceEeeeeeeeccc
Confidence 4567788999999999999999886554444
No 133
>PRK04531 acetylglutamate kinase; Provisional
Probab=83.22 E-value=14 Score=29.77 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=41.5
Q ss_pred CceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhh-hhC-CCeE
Q 028511 115 GIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLY-KGQ-GFKC 175 (208)
Q Consensus 115 ~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y-~k~-GF~~ 175 (208)
...++..+.|.+.-||.|++..++..+.+.. +.+.+.+..+|+. .++| ++. |+-.
T Consensus 309 ~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~-----~~L~Wrsr~~n~~-~~Wyf~~s~G~~~ 365 (398)
T PRK04531 309 GGPYLDKFAVLDDARGEGLGRAVWNVMREET-----PQLFWRSRHNNTI-NKFYYAESDGCIK 365 (398)
T ss_pred CceEeEEEEEccchhhcChHHHHHHHHHhhC-----CceEEEcCCCCCc-cceeeecccceEe
Confidence 3689999999999999999999999887654 4588888888863 3554 333 5443
No 134
>PHA02769 hypothetical protein; Provisional
Probab=82.68 E-value=1.3 Score=28.34 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=30.7
Q ss_pred HHHHHHHHHH---HHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 134 AKRLIAKAEA---QARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 134 g~~ll~~~~~---~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
|..|+..+.. ..+..|+..+...-.+++ +.++|.|.||+.+|..
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfpdh--snaly~kagfk~vg~t 140 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFPDH--SNALYKKAGFKLVGQT 140 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCCCc--chhHHhhhhhhHhccc
Confidence 5556555554 445558887766666654 5789999999998854
No 135
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=78.55 E-value=11 Score=29.07 Aligned_cols=149 Identities=13% Similarity=0.082 Sum_probs=67.2
Q ss_pred CCCCCCCeeEEecccccHHHHHHhhhhcCCCCCCChHHHHHhhhcCCCceEEEEeec--CcccccCCccccCCCcEEEEE
Q 028511 17 XXXXSPEIVVREARIEDIWEVAETHCSCFFPNYTFPLDLMLRVDSRMDETFFLGSED--FKVGGLDGKFSLHRGYVAGIL 94 (208)
Q Consensus 17 ~~~~~~~i~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~ivG~~ 94 (208)
+|.....--+|++..+|.+++.+|+.+-.. ..++.+......-.+.++-.++ +..+-+...+-..+|+|.+|.
T Consensus 252 lp~~tkt~GlR~~e~kD~~~v~~L~~~y~~-----Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFf 326 (451)
T COG5092 252 LPAKTKTEGLRLAEEKDMEDVARLYLEYSR-----RFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFF 326 (451)
T ss_pred CCccCCCcccchhhhhCHHHHHHHHHHHHH-----HHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccce
Confidence 333333455899999999999999875321 1111111110000011111000 000001111112247777776
Q ss_pred EeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccC------h---HHHHHHHHHHHHHhcCCceEEEEeecCChhhH
Q 028511 95 TVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKG------I---AKRLIAKAEAQARGWGCRSIALHCDFNNLGAT 165 (208)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~G------i---g~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~ 165 (208)
.+...+- +........+-+.+|+.-.+.+..+..-. + -..|+..++-.++..|+...-+.+..+|.
T Consensus 327 sFyslp~--t~i~n~kykdiq~gYLYYya~d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~dN~--- 401 (451)
T COG5092 327 SFYSLPF--TTIENKKYKDIQGGYLYYYAGDDQFKDFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMDNS--- 401 (451)
T ss_pred EEEeccc--eeecCccccccceeEEEEEccCccccccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhccch---
Confidence 6543221 11112223334456665444444222210 1 22344445556666687766666666664
Q ss_pred hhhhhCCCeE
Q 028511 166 KLYKGQGFKC 175 (208)
Q Consensus 166 ~~y~k~GF~~ 175 (208)
-|...++|-.
T Consensus 402 lFL~dLkFg~ 411 (451)
T COG5092 402 LFLADLKFGC 411 (451)
T ss_pred hHHHhcCccC
Confidence 5666777654
No 136
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=75.90 E-value=16 Score=22.97 Aligned_cols=48 Identities=17% Similarity=0.300 Sum_probs=38.3
Q ss_pred CceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhh
Q 028511 115 GIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLY 168 (208)
Q Consensus 115 ~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y 168 (208)
...+|..+.|.+.-++.|++..+++.+.+. ...+...+.++|+. .++|
T Consensus 32 ~v~~LdkFav~~~~~~~gv~D~vf~~i~~d-----~~~L~Wrsr~~n~~-n~Wy 79 (98)
T cd03173 32 SIPYLDKFAVSDHLWLNNVTDNIFNLIRKD-----FPSLLWRVRENDAN-LKWY 79 (98)
T ss_pred CCEEEEEEEEcccccccCHHHHHHHHHHhh-----CCeeEEEeCCCCCc-cceE
Confidence 468999999999999999999999977655 34688888887763 3544
No 137
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=72.37 E-value=28 Score=32.19 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=47.6
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
+|+++|++.+.+.. .+.+.++.+.-+|+. -.|+.-.|+..++.++++.|++.+.+...+
T Consensus 429 ~G~i~af~s~~p~~-------------~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~AP 487 (1094)
T PRK02983 429 DGQVVALLSFVPWG-------------RRGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNFAV 487 (1094)
T ss_pred CCeEEEEEEEeeeC-------------CCCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEechhh
Confidence 48999999997521 123777767777775 699999999999999999999999987554
No 138
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=71.06 E-value=28 Score=23.22 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=50.5
Q ss_pred CcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhc-CCceEEEEeecCChhhHh
Q 028511 88 GYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGW-GCRSIALHCDFNNLGATK 166 (208)
Q Consensus 88 g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~n~~a~~ 166 (208)
+.++|++.+....+ ..... +-.-+|++|| ++...-.....|+-+. .+..+...+. +-.+--+
T Consensus 47 ~~l~Gi~~v~~i~~-------------~~vec-Ha~y~P~fRG--~a~~~~~~F~kwlL~Ns~f~~vit~vp-~kt~~Gr 109 (151)
T PF11039_consen 47 GQLGGIVYVEEIQP-------------SVVEC-HAMYDPGFRG--YALEIGRLFCKWLLENSPFQNVITFVP-DKTRYGR 109 (151)
T ss_pred eEEEEEEEEEEEee-------------eeEEE-Eeeeccccch--hHHHHHHHHHHHHhcCCceeEEEEecc-cccccch
Confidence 78888887755332 13344 4456999998 8777777777777766 4554444333 3333334
Q ss_pred hh-hhCCCeEEecCCCCC
Q 028511 167 LY-KGQGFKCVKVPEGAN 183 (208)
Q Consensus 167 ~y-~k~GF~~~~~~~~~~ 183 (208)
.| +-+|.+.+|..+++.
T Consensus 110 vic~llg~~RVG~id~~~ 127 (151)
T PF11039_consen 110 VICRLLGARRVGHIDDYF 127 (151)
T ss_pred hHhhhhCCceeeeHHHHh
Confidence 44 556999999988763
No 139
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=67.38 E-value=17 Score=25.72 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=47.3
Q ss_pred CCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 113 RTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 113 ~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
....++|+.++.. +.|.++.|+..+...+...|++-+..+... ..++++.|+|......
T Consensus 84 R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~---~lr~~~~rlgl~~~~L 142 (179)
T PF12261_consen 84 RSQIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATR---QLRNLFRRLGLPPTVL 142 (179)
T ss_pred hhheeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCH---HHHHHHHHcCCCceec
Confidence 3456778777765 489999999999999999999976665544 8899999999887643
No 140
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=65.63 E-value=8.4 Score=26.95 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=27.1
Q ss_pred CccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 125 REKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 125 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
.+++|.-|+|.++|.. .|++++.+ .+.|+.-..-.+.+|-+++++.
T Consensus 122 ~~d~R~ygigaqIL~d-------LGV~~~rL--Ltnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 122 PEDLRDYGIGAQILRD-------LGVKKMRL--LTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp -S----THHHHHHHHH-------TT--SEEE--E-S-HHHHHHHHHTT--EEEEE
T ss_pred ccccccHHHHHHHHHH-------cCCCEEEE--CCCChhHHHHHhcCCCEEEEEe
Confidence 5778888888888764 49999888 4456777788899999888764
No 141
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=65.04 E-value=6.4 Score=25.20 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=16.9
Q ss_pred EEEEeecCChhhHhhhhhCCCeEEe
Q 028511 153 IALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 153 i~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
+.+.|. +=.+|++||+++||+...
T Consensus 4 i~l~V~-D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 4 VGIVVA-DMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred EEEEec-cHHHHHHHHHHhCceecC
Confidence 444443 344899999999998753
No 142
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=61.92 E-value=26 Score=24.68 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 133 IAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 133 ig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
.|+.|+.++.+.+++ .+..+.+.+++.-+.-..+-.+.|++...+.
T Consensus 25 ~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~gv~vi~tp 70 (177)
T COG2266 25 CGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVGVKVIETP 70 (177)
T ss_pred CCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcCceEEEcC
Confidence 478899999999888 7888999999988888899999999998865
No 143
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=60.94 E-value=19 Score=26.15 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=28.3
Q ss_pred HHHHHhcCCceEEEE---eecCChhhHhhhhhCCCeEEec
Q 028511 142 EAQARGWGCRSIALH---CDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 142 ~~~~~~~g~~~i~l~---~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
.+-++..|.+++.+. +.+-|.+...|++++||++...
T Consensus 110 v~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 110 VEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred HHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 344556688887775 4566889999999999999864
No 144
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=60.72 E-value=12 Score=27.08 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHHhc--CCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 132 GIAKRLIAKAEAQARGW--GCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 132 Gig~~ll~~~~~~~~~~--g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
|.|..++..+++..... ....+.|.........+++...+||....+
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEe
Confidence 68888888888877654 556677777766667788889999998864
No 145
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=60.72 E-value=62 Score=27.37 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=46.1
Q ss_pred CCcEEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEe
Q 028511 87 RGYVAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHC 157 (208)
Q Consensus 87 ~g~ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~ 157 (208)
+|+|+||+.+.+.. ......++-+.-+|+.= +|+...|+..++.+++++|++.+.+..
T Consensus 401 ~g~VvaFa~l~~~~------------~~~~~SlDlMR~sp~ap-~g~mdfLf~~li~~aKe~G~~~fsLgm 458 (538)
T COG2898 401 EGEVVAFANLMPTG------------GKEGYSLDLMRRSPDAP-NGTMDFLFSELILWAKEEGYQRFSLGM 458 (538)
T ss_pred CCCeEEEEeecccC------------CcceeEEEeeecCCCCC-chHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 48899999986522 12356777777777754 899999999999999999999998864
No 146
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=59.34 E-value=15 Score=23.60 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=15.1
Q ss_pred CChhhHhhhhhCCCeEEec
Q 028511 160 NNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 160 ~n~~a~~~y~k~GF~~~~~ 178 (208)
+=.++++||+.+||+....
T Consensus 10 Dl~~s~~FY~~lGf~~~~~ 28 (124)
T cd09012 10 DLEKSTAFYTALGFEFNPQ 28 (124)
T ss_pred CHHHHHHHHHHCCCEEccc
Confidence 3458999999999997643
No 147
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=57.12 E-value=36 Score=24.48 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=39.9
Q ss_pred EEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCCC
Q 028511 121 NVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEGA 182 (208)
Q Consensus 121 ~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~ 182 (208)
.+.--+++|.-|+|.+++..+ |++.+.+.+. |+.-+.-.+..|-+++.+.+..
T Consensus 119 ~lg~~~D~R~ygigAqIL~dL-------GI~~irLLtn--np~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 119 ALGFPADERDYGIGAQILKDL-------GIKKIRLLTN--NPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred hhcCCchHHHHHHHHHHHHHc-------CCcEEEEecC--ChHHHHHHHhCCceEEEEeecC
Confidence 466678899999999988755 9999998554 7655666678887777766543
No 148
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=55.99 E-value=20 Score=23.86 Aligned_cols=46 Identities=17% Similarity=0.068 Sum_probs=33.6
Q ss_pred ccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEe
Q 028511 128 FRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 128 ~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
=||-|+|+++++.+.+.+.+ .+.+...-.|.-|-.-..|.|-..-.
T Consensus 7 GQGGGiG~~iv~~lr~~~~~----~~eI~AlGTNa~AT~~MlKaGA~~gA 52 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPE----EVEIIALGTNAIATSAMLKAGANEGA 52 (131)
T ss_pred CCCChhHHHHHHHHHHhCCC----CcEEEEEehhHHHHHHHHHcCCCCcc
Confidence 38999999999988766544 25566666677777778888876443
No 149
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=55.20 E-value=21 Score=26.54 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeec---CChhhHhhhhhCCCeEEecC
Q 028511 134 AKRLIAKAEAQARGWGCRSIALHCDF---NNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 134 g~~ll~~~~~~~~~~g~~~i~l~~~~---~n~~a~~~y~k~GF~~~~~~ 179 (208)
...-..++.+-++..|+++|.+.+.. -|.....||++.||++....
T Consensus 104 ~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 104 VVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred eeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee
Confidence 33455666777778899999887543 36678899999999998753
No 150
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=53.97 E-value=10 Score=25.12 Aligned_cols=28 Identities=7% Similarity=0.097 Sum_probs=19.3
Q ss_pred CceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 150 CRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 150 ~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
+..+.+.|. +=.++++||+++||+....
T Consensus 4 i~Hi~i~v~-Dl~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 4 MDNVGIVVR-DLEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeEEEEeC-CHHHHHHHHHHcCCEEccc
Confidence 344555444 4458899999999987654
No 151
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=53.01 E-value=27 Score=23.11 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=15.3
Q ss_pred CChhhHhhhh-hCCCeEEecC
Q 028511 160 NNLGATKLYK-GQGFKCVKVP 179 (208)
Q Consensus 160 ~n~~a~~~y~-k~GF~~~~~~ 179 (208)
+-.+|++||+ .+||+..++.
T Consensus 12 DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 12 NRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred CHHHHHHHHHHhcCCEEEeee
Confidence 4458999995 5899987644
No 152
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=52.52 E-value=9.4 Score=24.30 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=16.6
Q ss_pred CChhhHhhhhhCCCeEEecCC
Q 028511 160 NNLGATKLYKGQGFKCVKVPE 180 (208)
Q Consensus 160 ~n~~a~~~y~k~GF~~~~~~~ 180 (208)
+=.++++||+.+||+......
T Consensus 11 Dl~~s~~FY~~LGf~~~~~~~ 31 (113)
T cd08356 11 DFAESKQFYQALGFELEWEND 31 (113)
T ss_pred cHHHHHHHHHHhCCeeEecCC
Confidence 334889999999999887543
No 153
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=51.29 E-value=40 Score=27.14 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=24.1
Q ss_pred hcCCceEEEEeecCChhhHhhhhhCCCeEEecCCC
Q 028511 147 GWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEG 181 (208)
Q Consensus 147 ~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~ 181 (208)
..|++.+.|. +.|+.-+.-.+.+|.+++++.+.
T Consensus 325 dLGV~~irLL--TNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 325 ALGIEKVRLL--TNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HcCCCEEEEC--CCCHHHHHHHHhCCCEEEEEecc
Confidence 4488888774 45776667778999999987643
No 154
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=49.04 E-value=56 Score=26.18 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=48.0
Q ss_pred EEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCCCCCCCCCC
Q 028511 121 NVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEGANWPQPKN 189 (208)
Q Consensus 121 ~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~~~~~~~~ 189 (208)
.+.++|......+...|++.+.+.+++.|+..+.+... ++.-....+..||....... +.|.+..+
T Consensus 105 R~l~~~~~~~~~~~~~L~~~~~~~a~~~~~Ss~h~lF~--~~~~~~~l~~~G~~~r~~~q-f~W~N~gy 170 (370)
T PF04339_consen 105 RLLIAPGADRAALRAALLQALEQLAEENGLSSWHILFP--DEEDAAALEEAGFLSRQGVQ-FHWHNRGY 170 (370)
T ss_pred ceeECCCCCHHHHHHHHHHHHHHHHHHcCCCcceeecC--CHHHHHHHHhCCCceecCCc-eEEecCCC
Confidence 57778888888899999999999999999988776432 23445677899998754433 33554444
No 155
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=48.46 E-value=27 Score=24.07 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCceEEEE--eecCCh--hhHhhhhhCCCeEEec
Q 028511 138 IAKAEAQARGWGCRSIALH--CDFNNL--GATKLYKGQGFKCVKV 178 (208)
Q Consensus 138 l~~~~~~~~~~g~~~i~l~--~~~~n~--~a~~~y~k~GF~~~~~ 178 (208)
++..++++++.|+++|=+. +.-.++ ...++++..||++.+.
T Consensus 43 veEiieFak~mgykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV 87 (157)
T PF08901_consen 43 VEEIIEFAKRMGYKKIGIAFCIGLRKEARILAKILEANGFEVYSV 87 (157)
T ss_pred HHHHHHHHHHcCCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEE
Confidence 5778889999999987654 222222 3357788999998865
No 156
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=48.44 E-value=16 Score=23.33 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=16.4
Q ss_pred CChhhHhhhhhCCCeEEecCC
Q 028511 160 NNLGATKLYKGQGFKCVKVPE 180 (208)
Q Consensus 160 ~n~~a~~~y~k~GF~~~~~~~ 180 (208)
+=.++++||+++||+......
T Consensus 12 Dl~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 12 DLDATEAFYARLGFSVGYRQA 32 (120)
T ss_pred CHHHHHHHHHHcCCEEEecCC
Confidence 344899999889999876554
No 157
>PF04555 XhoI: Restriction endonuclease XhoI; InterPro: IPR007636 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction enzymes such as XhoI (3.1.21.4 from EC), which recognises the double-stranded sequence CTCGAG and cleave after C-1 [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=46.94 E-value=99 Score=22.12 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=32.7
Q ss_pred EEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 121 NVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 121 ~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
.+-|+|+|+|..+.++.-..+....++.-+....+...+
T Consensus 144 hFpv~p~F~g~SY~~Ry~ilc~rLv~e~lY~aa~l~~s~ 182 (196)
T PF04555_consen 144 HFPVDPEFKGASYLKRYEILCERLVQERLYTAACLITSP 182 (196)
T ss_pred CCCccHHhcCCcHHHHHHHHHHHHHHhcccceeEEEEec
Confidence 478999999999999999888888888877776665554
No 158
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=46.13 E-value=52 Score=27.89 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=26.2
Q ss_pred HHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCC
Q 028511 145 ARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEG 181 (208)
Q Consensus 145 ~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~ 181 (208)
++..|++++.|. +.|+.-+.-.+.+|.+++++.+.
T Consensus 346 L~dLGI~kIrLL--TNNP~Ki~~L~~~GIeVv~rvpl 380 (555)
T PRK09319 346 LNDLGIKRLRLI--TNNPRKIAGLGGYGLEVVDRVPL 380 (555)
T ss_pred HHHcCCCEEEEC--CCCHHHHHHHHhCCCEEEEEecc
Confidence 345588888774 45777777788999999987654
No 159
>cd04263 DUF619-NAGK-FABP DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway. DUF619-NAGK-FABP: DUF619 domain of N-acetylglutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (FABP). The nuclear-encoded, mitochondrial polyprotein precursor (ARG5,6) consists of an N-terminal NAGK (ArgB) domain, a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved into two distinct enzymes (NAGK-DUF619 and NAGPR) in the mitochondria. Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. Arg5,6 catalyzes the second reaction of arginine biosynthesis; the phosphorylation of the gamma-carboxyl group of NAG to produce N-acetylglutamylphosphate (NAGP) which is subsequently converted to ornithine in two more steps. It also binds and regulates the promoters of nuclear and mitochondrial genes, and may possibly regu
Probab=45.77 E-value=76 Score=20.03 Aligned_cols=48 Identities=6% Similarity=0.082 Sum_probs=37.5
Q ss_pred CceEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhh
Q 028511 115 GIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLY 168 (208)
Q Consensus 115 ~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y 168 (208)
...+|..+.|..+-++.|++..+++.+.+. ...+...+.++|+ ...+|
T Consensus 32 ~vp~LdkF~vs~~~~l~~vaD~Vf~~i~~d-----~p~L~W~~r~~n~-~~~W~ 79 (98)
T cd04263 32 EVATLATFTITKSGWLNNVADNIFTAIKKD-----HPKLVWTVREDDE-NLKWH 79 (98)
T ss_pred CCEEEEEEEEccccccccHHHHHHHHHHhh-----CCeeEEEeCCCCC-ccceE
Confidence 478999999999999999999999977655 3467787887775 34444
No 160
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=45.42 E-value=40 Score=24.79 Aligned_cols=49 Identities=10% Similarity=0.210 Sum_probs=36.3
Q ss_pred cChHHHHHHHHHHHHHhc--CCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 131 KGIAKRLIAKAEAQARGW--GCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 131 ~Gig~~ll~~~~~~~~~~--g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
-|.|..++..+++...+. +..++.|.....-..-+.+..+++|+...+.
T Consensus 92 AGMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 92 AGMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred eCCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeee
Confidence 488999999999988876 6667766544433455777889999987643
No 161
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=45.20 E-value=57 Score=21.10 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=34.7
Q ss_pred eEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 117 AYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 117 ~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
..+-.+++.|+ .+..+++.+.+.|.+.+.+.....+..+..+-++.|.+..|.
T Consensus 56 iDlavv~~~~~---------~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 56 IDLAVVCVPPD---------KVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -SEEEE-S-HH---------HHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred CCEEEEEcCHH---------HHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 44444555554 455666677777999999998888999999999999999874
No 162
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=44.79 E-value=54 Score=23.47 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=35.3
Q ss_pred CccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCC
Q 028511 125 REKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPE 180 (208)
Q Consensus 125 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~ 180 (208)
.+++|.-|+|.++|..+ |++.+.|.+. |+.-..-...+|-++++..+
T Consensus 121 ~~d~R~yGiGAQIL~dL-------GV~~~rLLtn--~~~k~~~L~g~gleVv~~~~ 167 (191)
T TIGR00505 121 PADERDFSLCADILEDL-------GVKKVRLLTN--NPKKIEILKKAGINIVERVP 167 (191)
T ss_pred cccceehhHHHHHHHHc-------CCCEEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 45699999999998755 9999888555 44445556788888887653
No 163
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=44.15 E-value=56 Score=23.51 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=35.7
Q ss_pred eCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCC
Q 028511 124 VREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPE 180 (208)
Q Consensus 124 v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~ 180 (208)
..+++|.-|+|.++|..+ |+..+.+.+. |+.-..-...+|.++++..+
T Consensus 123 ~~~d~R~yGiGAQIL~dL-------GV~~mrLLtn--~~~k~~~L~g~GleV~~~~~ 170 (197)
T PRK00393 123 FAADERDYTLAADMLKAL-------GVKKVRLLTN--NPKKVEALTEAGINIVERVP 170 (197)
T ss_pred CCccceehhHHHHHHHHc-------CCCEEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 355699999999998754 9999888554 54445556688999887653
No 164
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=42.57 E-value=54 Score=23.54 Aligned_cols=44 Identities=9% Similarity=0.219 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCCceEEEEeecCC--hhhHhhhhhCCCeEEec
Q 028511 135 KRLIAKAEAQARGWGCRSIALHCDFNN--LGATKLYKGQGFKCVKV 178 (208)
Q Consensus 135 ~~ll~~~~~~~~~~g~~~i~l~~~~~n--~~a~~~y~k~GF~~~~~ 178 (208)
-.+++++.+.+++.|...+.+.-.+.. ......++..||.....
T Consensus 22 P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 22 PEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred HHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 358999999999999987766655443 36788899999987744
No 165
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=42.31 E-value=89 Score=23.93 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=42.2
Q ss_pred CceEEEEEEeCccccccC--hHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCC
Q 028511 115 GIAYISNVAVREKFRRKG--IAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEG 181 (208)
Q Consensus 115 ~~~~i~~l~v~p~~rg~G--ig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~ 181 (208)
....|.++.-++.+-..| +-...+..-+..+++.|+..|.+...+..+.-..+..++|+-+......
T Consensus 13 k~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 13 KPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp EEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-
T ss_pred EEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccc
Confidence 346777777777654444 4567777777889999999999977776777777778999988766544
No 166
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=41.62 E-value=72 Score=20.47 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=24.2
Q ss_pred CccccccChHHHHHHHHHHHHHhc-CCceEEEEeecCChhhHhh---hhhCCCeEEec
Q 028511 125 REKFRRKGIAKRLIAKAEAQARGW-GCRSIALHCDFNNLGATKL---YKGQGFKCVKV 178 (208)
Q Consensus 125 ~p~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~n~~a~~~---y~k~GF~~~~~ 178 (208)
.+...++| -|.-+-++++.|.+. ++..+.+.+..+......+ +.=.||+.+..
T Consensus 31 p~~~~~~~-~K~~lvaLLElAee~L~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~ 87 (108)
T PF02100_consen 31 PSSALGQG-SKESLVALLELAEEKLGCSHVVICLDKNRPDRASLLRTLMWVGFELVTP 87 (108)
T ss_dssp SS---SS---SHHHHHHHHHHHHHH----EEEEE---SS-HHHHHHHHTTT--EEE--
T ss_pred CCcccccc-cHHHHHHHHHHhcCcCCCCEEEEEEECCchhHHHhhhhcEeeccEecCC
Confidence 44444443 567777888888764 9999999888776654444 44458888764
No 167
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=41.52 E-value=37 Score=22.32 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=18.7
Q ss_pred EEEEeecCChhhHhhhhh-CCCeEEecC
Q 028511 153 IALHCDFNNLGATKLYKG-QGFKCVKVP 179 (208)
Q Consensus 153 i~l~~~~~n~~a~~~y~k-~GF~~~~~~ 179 (208)
+.+.| .+=.++++||++ +||+.....
T Consensus 4 i~i~V-~D~e~s~~FY~~vLGf~~~~~~ 30 (136)
T cd08342 4 VEFYV-GNAKQLASWFSTKLGFEPVAYH 30 (136)
T ss_pred EEEEe-CCHHHHHHHHHHhcCCeEEEec
Confidence 44544 344588999998 999988754
No 168
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=41.51 E-value=86 Score=23.33 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCCC
Q 028511 134 AKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEGA 182 (208)
Q Consensus 134 g~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~~ 182 (208)
|+-|+.++.+.+.+.|..++.+.+ +++.-..--+++|++.+-+..++
T Consensus 27 GkpmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~~G~~avmT~~~h 73 (247)
T COG1212 27 GKPMIVRVAERALKSGADRVVVAT--DDERIAEAVQAFGGEAVMTSKDH 73 (247)
T ss_pred CchHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCEEEecCCCC
Confidence 678999999999999999887744 55666777789999998776654
No 169
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=41.11 E-value=50 Score=27.25 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=24.8
Q ss_pred HhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCC
Q 028511 146 RGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEG 181 (208)
Q Consensus 146 ~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~ 181 (208)
+..|++.+.|. +.|+.-+.-.+.+|.+++++.+.
T Consensus 377 ~dLGI~~irLL--TNNp~K~~~L~~~GieVve~vp~ 410 (450)
T PLN02831 377 RDLGVRTMRLM--TNNPAKYTGLKGYGLAVVGRVPL 410 (450)
T ss_pred HHcCCCEEEEC--CCCHHHHHHHhhCCCEEEEEecc
Confidence 34588888874 45776677778999999877643
No 170
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=40.89 E-value=18 Score=24.50 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=22.6
Q ss_pred CCceEEEEeecCChhhHhhhhhCCCeEEecCCC
Q 028511 149 GCRSIALHCDFNNLGATKLYKGQGFKCVKVPEG 181 (208)
Q Consensus 149 g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~ 181 (208)
|+..|...+.. -.++..+++++||+.+++.+.
T Consensus 9 G~dFvEFa~~~-~~~l~~~~~~lGF~~~a~hrs 40 (139)
T PF14696_consen 9 GFDFVEFAVPD-AQALAQLFTALGFQPVARHRS 40 (139)
T ss_dssp EEEEEEEE-SS-TTSCHHHHCCCCEEEECCECC
T ss_pred CeEEEEEecCC-HHHHHHHHHHhCcceEEecCC
Confidence 55667766554 346778889999999987644
No 171
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=40.83 E-value=13 Score=21.24 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=11.0
Q ss_pred eCccccccChHHHH
Q 028511 124 VREKFRRKGIAKRL 137 (208)
Q Consensus 124 v~p~~rg~Gig~~l 137 (208)
=+|+||++.+++.|
T Consensus 52 HhPqYrn~~iA~LL 65 (67)
T PF03376_consen 52 HHPQYRNQQIAALL 65 (67)
T ss_pred cCchhcCHHHHHHh
Confidence 37899999888754
No 172
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=39.89 E-value=1.8e+02 Score=23.58 Aligned_cols=54 Identities=9% Similarity=0.093 Sum_probs=36.3
Q ss_pred cccccChHHHHHHHHHHHHHhcCCceEEEEe---------------ecCChhhHhhhhhCCCeEEecCC
Q 028511 127 KFRRKGIAKRLIAKAEAQARGWGCRSIALHC---------------DFNNLGATKLYKGQGFKCVKVPE 180 (208)
Q Consensus 127 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~---------------~~~n~~a~~~y~k~GF~~~~~~~ 180 (208)
+|...-+-..+++.+.+++++.++-.+.+.. ...|...+..++++||+..+...
T Consensus 74 d~~d~ell~~f~~~Lk~~akk~~a~~lridP~~~~~~~~~~g~~~~~~~~~~~~~~l~~~G~~~~g~~~ 142 (406)
T PF02388_consen 74 DYSDEELLEFFLEELKKYAKKKRALFLRIDPNVIYQERDEDGEPIEGEENDELIENLKALGFRHQGFTK 142 (406)
T ss_dssp -TT-HHHHHHHHHHHHHHHCTTTEEEEEE--S-EEECE-TTS-EEEE-S-THHHHHHHHTT-CCTS-SS
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCEEEEEEeCchhhhhcccccccccCcchHHHHHHHHhcCceecCccc
Confidence 7778888999999999999887665555431 23455678899999999887654
No 173
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=39.04 E-value=71 Score=25.95 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=24.6
Q ss_pred HHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCC
Q 028511 145 ARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEG 181 (208)
Q Consensus 145 ~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~ 181 (208)
++..|+.++.|.+ +|+.-+.-.+.+|.+++++.+.
T Consensus 342 L~~LGv~~irLLT--nnp~K~~~L~~~GieV~~~v~~ 376 (402)
T PRK09311 342 LVDLGVRSMRLLT--NNPRKIAGLQGYGLHVTERVPL 376 (402)
T ss_pred HHHcCCCEEEECC--CCHHHHHHHhhCCCEEEEEecc
Confidence 3445888887754 4665566678999999877643
No 174
>PRK08815 GTP cyclohydrolase; Provisional
Probab=37.67 E-value=62 Score=26.01 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=29.5
Q ss_pred cccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCC
Q 028511 127 KFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEG 181 (208)
Q Consensus 127 ~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~ 181 (208)
++|.-|+|.++|. ..|++++.|.+. |+.-..-.+.+|.++++..+.
T Consensus 297 D~RdygigAQIL~-------dLGV~kirLLTn--np~K~~~L~g~gieVv~~vp~ 342 (375)
T PRK08815 297 DERRYGSAVAMLR-------GLGITRVRLLTN--NPTKAERLRAAGIEVEDRIRV 342 (375)
T ss_pred cceeeeHHHHHHH-------HcCCCeEEECCC--CHHHHHHHHhCCCEEEEEecc
Confidence 3444444444443 448888888544 665566677999999887643
No 175
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=36.22 E-value=25 Score=30.64 Aligned_cols=74 Identities=23% Similarity=0.245 Sum_probs=54.5
Q ss_pred EEEEEEeccccCCCCCCCCCCCCCCCceEEEEEEeCccccccChHHHHHHHHHHHHHhcC-CceEEEEeecCChhhHhhh
Q 028511 90 VAGILTVDTVADFLPRKGPLRQRRTGIAYISNVAVREKFRRKGIAKRLIAKAEAQARGWG-CRSIALHCDFNNLGATKLY 168 (208)
Q Consensus 90 ivG~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g-~~~i~l~~~~~n~~a~~~y 168 (208)
+||-++..+.+. .+...|....|.-+-|-+|+|+.++.++.++.+..+ +..+...+. + .++..+
T Consensus 431 ~vggi~~r~f~~------------k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~ltyad--~-~aigyf 495 (720)
T KOG1472|consen 431 VVGGICFRPFPE------------KGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTYAD--E-GAIGYF 495 (720)
T ss_pred cccccccCcCcc------------cCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHhhh--h-cccccc
Confidence 777777765332 345778888999999999999999999999998764 343333333 2 678888
Q ss_pred hhCCCeEEec
Q 028511 169 KGQGFKCVKV 178 (208)
Q Consensus 169 ~k~GF~~~~~ 178 (208)
.+.||...-.
T Consensus 496 kkqgfs~ei~ 505 (720)
T KOG1472|consen 496 KKQGFSKEIK 505 (720)
T ss_pred cCccchhhcc
Confidence 9999886543
No 176
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.69 E-value=64 Score=23.94 Aligned_cols=35 Identities=9% Similarity=-0.029 Sum_probs=30.3
Q ss_pred CccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 125 REKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 125 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
.|...|+-.|..-+..++++|.+.|++.+++.+.+
T Consensus 26 l~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS 60 (230)
T PRK14837 26 LSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60 (230)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 35667888899999999999999999999998654
No 177
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=35.59 E-value=64 Score=23.89 Aligned_cols=34 Identities=6% Similarity=-0.014 Sum_probs=30.0
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
|...|+-.|..-+..++++|.+.|++.+++.+.+
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFS 53 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWCANLGVECLTLYAFS 53 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5667888899999999999999999999998654
No 178
>PRK10150 beta-D-glucuronidase; Provisional
Probab=35.44 E-value=1.7e+02 Score=25.13 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=49.8
Q ss_pred CCCceEEEEEEeCccc--cccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCCC
Q 028511 113 RTGIAYISNVAVREKF--RRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPEG 181 (208)
Q Consensus 113 ~~~~~~i~~l~v~p~~--rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~~ 181 (208)
++....+.++..+++. +|.++-...+..-++.+++.|+..+.+.-.+..+....+.-++|+-+..+.+.
T Consensus 288 NG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~ 358 (604)
T PRK10150 288 NGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPA 358 (604)
T ss_pred CCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccc
Confidence 3445677777666664 45556667777778889999999999976665666666677999988876643
No 179
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=35.42 E-value=31 Score=21.67 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=19.0
Q ss_pred ceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 151 RSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 151 ~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
..+.+.|. +=.++.+||+.+||+.....
T Consensus 4 ~hv~l~v~-d~~~s~~FY~~lG~~~~~~~ 31 (112)
T cd08344 4 DHFALEVP-DLEVARRFYEAFGLDVREEG 31 (112)
T ss_pred eEEEEecC-CHHHHHHHHHHhCCcEEeec
Confidence 34445443 23488999999999987543
No 180
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.30 E-value=55 Score=24.62 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=31.5
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec-CCh
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF-NNL 162 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~-~n~ 162 (208)
+...|+-.|..-+..++++|.+.|++.+++.+.+ +|-
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~ 78 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENW 78 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhh
Confidence 4456788899999999999999999999999876 554
No 181
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=34.52 E-value=32 Score=21.65 Aligned_cols=27 Identities=7% Similarity=0.113 Sum_probs=18.5
Q ss_pred eEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 152 SIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 152 ~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
.+.+.|. +=.++.+||+.+||+.....
T Consensus 6 hv~l~v~-Dl~~s~~FY~~lGl~~~~~~ 32 (113)
T cd07267 6 HVRFEHP-DLDKAERFLTDFGLEVAART 32 (113)
T ss_pred EEEEccC-CHHHHHHHHHHcCCEEEEec
Confidence 3444443 33478999999999886553
No 182
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=34.52 E-value=21 Score=23.58 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=15.4
Q ss_pred CChhhHhhhhhCCCeEEecC
Q 028511 160 NNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 160 ~n~~a~~~y~k~GF~~~~~~ 179 (208)
+-.++.+||+++||+.-...
T Consensus 13 DL~~S~~Fy~alGfk~Npq~ 32 (133)
T COG3607 13 DLEASKAFYTALGFKFNPQF 32 (133)
T ss_pred hHHHHHHHHHHhCcccCCCc
Confidence 34478999999999876543
No 183
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=34.29 E-value=49 Score=20.83 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=18.3
Q ss_pred ceEEEEeecCChhhHhhhhh-CCCeEEecC
Q 028511 151 RSIALHCDFNNLGATKLYKG-QGFKCVKVP 179 (208)
Q Consensus 151 ~~i~l~~~~~n~~a~~~y~k-~GF~~~~~~ 179 (208)
..+.+.|. +=.++.+||++ +||+.....
T Consensus 3 ~hv~l~v~-d~~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 3 HHVTLITR-DAQETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred ccEEEEcC-ChhHhHHHHHHccCCEEeeeE
Confidence 34555443 33478999975 799987553
No 184
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=33.29 E-value=66 Score=25.77 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=22.9
Q ss_pred HHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 144 QARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 144 ~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
.++..|+..+.|.+ |+.-+.-.+.+|.+++++.
T Consensus 330 IL~~Lgv~~irLlT---np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 330 ILRDLGVGKMRLLS---SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHcCCCeEEECC---CcHHHHhhhhCCcEEEEEe
Confidence 34455888888865 4555555678888888764
No 185
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.89 E-value=66 Score=24.09 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=31.3
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEee-cCCh
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCD-FNNL 162 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~-~~n~ 162 (208)
+...|+-.|..-+..++++|.+.|++.+++.+. .+|-
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~ 72 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENW 72 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhh
Confidence 456678889999999999999999999999977 4454
No 186
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=32.08 E-value=40 Score=20.67 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.9
Q ss_pred hhhHhhhhh-CCCeEEecC
Q 028511 162 LGATKLYKG-QGFKCVKVP 179 (208)
Q Consensus 162 ~~a~~~y~k-~GF~~~~~~ 179 (208)
.++.+||++ +||+.....
T Consensus 7 ~~a~~FY~~~lg~~~~~~~ 25 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDD 25 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEeC
Confidence 478999997 899998843
No 187
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=32.06 E-value=1.7e+02 Score=20.10 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEe-----------ecCChhhHhhhhhCCCeEEecCC
Q 028511 134 AKRLIAKAEAQARGWGCRSIALHC-----------DFNNLGATKLYKGQGFKCVKVPE 180 (208)
Q Consensus 134 g~~ll~~~~~~~~~~g~~~i~l~~-----------~~~n~~a~~~y~k~GF~~~~~~~ 180 (208)
+....+.+.+.+.+.|++.+.+.+ -+....+++-..+.|+++.....
T Consensus 74 Aq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~D 131 (149)
T PTZ00129 74 AMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIED 131 (149)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 455667777888889999999988 46677889999999999887643
No 188
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=31.93 E-value=74 Score=25.52 Aligned_cols=35 Identities=9% Similarity=-0.033 Sum_probs=22.9
Q ss_pred HHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCC
Q 028511 143 AQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPE 180 (208)
Q Consensus 143 ~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~ 180 (208)
+.++..|+.++.|. +|+.-+.-.+.+|.+++++.+
T Consensus 332 qILr~LGV~kirLL---nNP~K~~~L~~~GIeV~~~vp 366 (369)
T PRK12485 332 QILQDLGVGKLRHL---GPPLKYAGLTGYDLEVVESIP 366 (369)
T ss_pred HHHHHcCCCEEEEC---CCchhhhhhhhCCcEEEEEec
Confidence 34445588888886 355555556788888877643
No 189
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=31.74 E-value=76 Score=23.34 Aligned_cols=37 Identities=5% Similarity=-0.020 Sum_probs=29.3
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec-CCh
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF-NNL 162 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~-~n~ 162 (208)
|...|+..|..-+..+.++|.+.|++.+++.+.+ +|-
T Consensus 15 ~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~ 52 (223)
T PF01255_consen 15 PRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENW 52 (223)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhh
Confidence 3456777889999999999999999999999765 443
No 190
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.35 E-value=76 Score=23.95 Aligned_cols=34 Identities=9% Similarity=0.192 Sum_probs=29.6
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
|...|+--|..-+..++++|.+.|++.+++.+.+
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS 72 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCKDWGIKALTAYAFS 72 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5567888899999999999999999999998654
No 191
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=31.04 E-value=82 Score=23.22 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=29.7
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
|...|+--|..-+..+.++|.+.|++.+++.+.+
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS 54 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFS 54 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 5567888899999999999999999999998654
No 192
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=30.95 E-value=73 Score=20.65 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=19.3
Q ss_pred cChHHHHHHHHHHHHHhcCCceEE
Q 028511 131 KGIAKRLIAKAEAQARGWGCRSIA 154 (208)
Q Consensus 131 ~Gig~~ll~~~~~~~~~~g~~~i~ 154 (208)
.+|...+++.+++.+++.|.+++.
T Consensus 4 ~si~~~iv~~v~~~a~~~~~~~V~ 27 (114)
T PRK03681 4 ITLCQRALELIEQQAAKHGAKRVT 27 (114)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEE
Confidence 367889999999999998766543
No 193
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=30.20 E-value=90 Score=23.88 Aligned_cols=40 Identities=28% Similarity=0.152 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCceEEEEeecCC-----------hhhHhhhhhCCCeEE
Q 028511 136 RLIAKAEAQARGWGCRSIALHCDFNN-----------LGATKLYKGQGFKCV 176 (208)
Q Consensus 136 ~ll~~~~~~~~~~g~~~i~l~~~~~n-----------~~a~~~y~k~GF~~~ 176 (208)
.-+..+.++++++|+. |.|.+.... ..+.+.|++.|-+=+
T Consensus 73 ~dl~elv~Ya~~KgVg-i~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~Gv 123 (273)
T PF10566_consen 73 FDLPELVDYAKEKGVG-IWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGV 123 (273)
T ss_dssp --HHHHHHHHHHTT-E-EEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEE
T ss_pred cCHHHHHHHHHHcCCC-EEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEE
Confidence 4566666666666666 333333322 345566666665543
No 194
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=29.75 E-value=3.1e+02 Score=22.33 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=32.3
Q ss_pred eEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEe
Q 028511 117 AYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHC 157 (208)
Q Consensus 117 ~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~ 157 (208)
.++ .-+..++|++-+-...|.-+++.+|.++|+...-+.-
T Consensus 318 ~yl-y~gs~~~~~~~~~~~~l~~~~i~~a~~~G~~~ydf~G 357 (406)
T PF02388_consen 318 YYL-YGGSDEEYRKFYAPYLLQWEAIKYAKEKGIKRYDFGG 357 (406)
T ss_dssp EEE-EEEE-CGCGGCTHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred EEE-ECccchhhHhcCcchHHHHHHHHHHHHCCCCEEEeeC
Confidence 344 5688999999999999999999999999999887753
No 195
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.75 E-value=90 Score=23.24 Aligned_cols=37 Identities=5% Similarity=0.051 Sum_probs=30.9
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec-CCh
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF-NNL 162 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~-~n~ 162 (208)
|...|+--|..-+..+.++|.+.|++.+++.+.+ +|-
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~ 61 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENW 61 (233)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhc
Confidence 5566888899999999999999999999998654 443
No 196
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.09 E-value=85 Score=23.28 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=29.3
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
+...|+-.|..-+..++++|.+.|++.+++.+.+
T Consensus 14 ~~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS 47 (229)
T PRK10240 14 IRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 47 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeee
Confidence 4566777899999999999999999999998654
No 197
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.96 E-value=97 Score=23.22 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=29.7
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
+...|+-.|..-+..++++|.+.|++.+++.+.+
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS 62 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDASLEYGLKNISLYAFS 62 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5567888899999999999999999999998654
No 198
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=27.76 E-value=94 Score=24.37 Aligned_cols=34 Identities=0% Similarity=-0.131 Sum_probs=29.9
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
|...|+-.|..-+..++++|.+.|++.+++.+.+
T Consensus 40 ~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFS 73 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEICIKLKIKILSVFSFS 73 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5566888999999999999999999999998654
No 199
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=27.70 E-value=1.4e+02 Score=21.36 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=34.2
Q ss_pred CccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCC
Q 028511 125 REKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPE 180 (208)
Q Consensus 125 ~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~ 180 (208)
..++|.-|+|.++|..+ |+..+.|.+. |+.-..-...+|-++++..+
T Consensus 123 ~~d~R~yGiGAQIL~dL-------Gv~~mrLLs~--~~~k~~~L~gfglevv~~~~ 169 (193)
T cd00641 123 PADARDYGLAAQILRDL-------GIKSVRLLTN--NPDKIDALEGYGIEVVERVP 169 (193)
T ss_pred CccccchHHHHHHHHHc-------CCCeEEECCC--CHHHHHHHHhCCCEEEEEec
Confidence 45689999999998754 8999988665 44334445678888887653
No 200
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=27.57 E-value=1.4e+02 Score=17.81 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEE
Q 028511 133 IAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCV 176 (208)
Q Consensus 133 ig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~ 176 (208)
-|-.++..+.+.+++.|... .+ ..-++...++++..|+...
T Consensus 54 ~g~~~L~~l~~~~~~~g~~v-~i--~~~~~~~~~~l~~~gl~~~ 94 (99)
T cd07043 54 SGLGVLLGAYKRARAAGGRL-VL--VNVSPAVRRVLELTGLDRL 94 (99)
T ss_pred hhHHHHHHHHHHHHHcCCeE-EE--EcCCHHHHHHHHHhCccee
Confidence 35567777777887777663 22 3334578999999997643
No 201
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=27.51 E-value=49 Score=22.69 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=18.9
Q ss_pred CCceEEEEeecCChhhHhhhhh-CCCeEEe
Q 028511 149 GCRSIALHCDFNNLGATKLYKG-QGFKCVK 177 (208)
Q Consensus 149 g~~~i~l~~~~~n~~a~~~y~k-~GF~~~~ 177 (208)
++..+.+.|. +=.+|+.||++ +||+...
T Consensus 4 ~i~Hv~i~V~-Dle~s~~FY~~~LG~~~~~ 32 (162)
T TIGR03645 4 TFSHIGISVP-DLDAAVKFYTEVLGWYLIM 32 (162)
T ss_pred eEEEEEEEeC-CHHHHHHHHHHhcCCEEEe
Confidence 3445555554 44589999976 8998764
No 202
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.48 E-value=99 Score=23.31 Aligned_cols=34 Identities=9% Similarity=0.017 Sum_probs=29.5
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
+...|+--|..-+..++++|.+.|++.+++.+.+
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS 76 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFS 76 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 5566777899999999999999999999998654
No 203
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.46 E-value=84 Score=24.36 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=31.0
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEee-cCCh
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCD-FNNL 162 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~-~~n~ 162 (208)
+...|+-.|..-+..++++|.+.|++.+++.+. .+|-
T Consensus 88 ~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~ 125 (296)
T PRK14827 88 ARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENW 125 (296)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhh
Confidence 556677789999999999999999999999977 4554
No 204
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=27.35 E-value=72 Score=19.95 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=20.4
Q ss_pred CCceEEEEeecCChhhHhhhhh-CCCeEEecC
Q 028511 149 GCRSIALHCDFNNLGATKLYKG-QGFKCVKVP 179 (208)
Q Consensus 149 g~~~i~l~~~~~n~~a~~~y~k-~GF~~~~~~ 179 (208)
++..+.+.|. +-.++.+||++ +||+.....
T Consensus 3 ~l~hi~l~v~-d~~~s~~Fy~~~lG~~~~~~~ 33 (125)
T cd07253 3 RIDHVVLTVA-DIEATLDFYTRVLGMEVVRFG 33 (125)
T ss_pred ccceEEEEec-CHHHHHHHHHHHhCceeeccc
Confidence 3445556553 44488999987 899987654
No 205
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=26.79 E-value=1.2e+02 Score=21.81 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEE
Q 028511 134 AKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCV 176 (208)
Q Consensus 134 g~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~ 176 (208)
|+.|+++.++.+.+.|+..+.+.+......-.....+.|.+..
T Consensus 25 gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~~~~~~~ 67 (229)
T cd02540 25 GKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALANPNVEFV 67 (229)
T ss_pred CccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCCCCcEEE
Confidence 5789999999999889888888776654444444455566544
No 206
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=26.68 E-value=44 Score=21.02 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=20.1
Q ss_pred CceEEEEeecCChhhHhhhhh-CCCeEEecCCC
Q 028511 150 CRSIALHCDFNNLGATKLYKG-QGFKCVKVPEG 181 (208)
Q Consensus 150 ~~~i~l~~~~~n~~a~~~y~k-~GF~~~~~~~~ 181 (208)
+..+.+.+. +=.++++||++ +||+.......
T Consensus 4 i~hv~l~v~-d~~~s~~FY~~~lG~~~~~~~~~ 35 (120)
T cd08362 4 LRGVGLGVP-DLAAAAAFYREVWGLSVVAEDDG 35 (120)
T ss_pred eeEEEEecC-CHHHHHHHHHhCcCcEEEEecCC
Confidence 444555543 34478999986 79998755433
No 207
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.57 E-value=1.2e+02 Score=22.88 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=29.2
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
+...|+-.|..-+..++++|.+.|++.+++.+.+
T Consensus 35 ~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS 68 (249)
T PRK14834 35 PRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFS 68 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 4456777899999999999999999999998754
No 208
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.40 E-value=1e+02 Score=22.90 Aligned_cols=34 Identities=3% Similarity=-0.083 Sum_probs=29.0
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
|...|+--|..-+..++++|.+.|++.+++.+.+
T Consensus 25 ~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS 58 (233)
T PRK14833 25 ARAAGHKKGVKTLREITIWCANHKLECLTLYAFS 58 (233)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 4456777899999999999999999999998654
No 209
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.22 E-value=69 Score=20.03 Aligned_cols=29 Identities=24% Similarity=0.529 Sum_probs=19.6
Q ss_pred CCceEEEEeecCChhhHhhhh-hCCCeEEec
Q 028511 149 GCRSIALHCDFNNLGATKLYK-GQGFKCVKV 178 (208)
Q Consensus 149 g~~~i~l~~~~~n~~a~~~y~-k~GF~~~~~ 178 (208)
++..+.+.|. +=.++.+||. .+||+....
T Consensus 3 ~~~hi~l~v~-d~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICS-DYEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcC-CHHHHHHHHHHhcCCEEeee
Confidence 4555666664 4447899997 589987643
No 210
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.04 E-value=1.1e+02 Score=22.90 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=29.4
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
+...|+-.|..-+..++++|.+.|++.+++.+.+
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS 63 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFS 63 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEec
Confidence 4556888899999999999999999999998654
No 211
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=25.92 E-value=75 Score=21.40 Aligned_cols=43 Identities=21% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 134 AKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 134 g~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
|+.|++++++.+++.++..+++.+.. ..-...+.+.+.+.+..
T Consensus 23 g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~~~~~v~~ 65 (160)
T PF12804_consen 23 GKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERYGIKVVVD 65 (160)
T ss_dssp TEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTTTSEEEE-
T ss_pred CccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhccCceEEEe
Confidence 56789999999998898888887766 23344556778777654
No 212
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.64 E-value=96 Score=21.31 Aligned_cols=41 Identities=15% Similarity=0.049 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCe
Q 028511 134 AKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFK 174 (208)
Q Consensus 134 g~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~ 174 (208)
|+.|++++++.+...++..+.+.+...+......+...|..
T Consensus 25 g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~ 65 (186)
T cd04182 25 GKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAGLPVV 65 (186)
T ss_pred CeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcCCCeE
Confidence 57899999998888777778776665443333334444543
No 213
>PRK07198 hypothetical protein; Validated
Probab=25.52 E-value=1.2e+02 Score=24.55 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=35.6
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceE-EEEeecCChhhHhhhhhCCCeEEecCCC
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSI-ALHCDFNNLGATKLYKGQGFKCVKVPEG 181 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i-~l~~~~~n~~a~~~y~k~GF~~~~~~~~ 181 (208)
+++|..|+|.++|..+ |+.++ .|.+. |+.-..-...+|-+++++.+.
T Consensus 329 ~D~RdyGlGAQILrdL-------GV~Km~RLLTN--np~K~~gL~GfGLEVVErVpl 376 (418)
T PRK07198 329 QDMRFQELMPDVLHWL-------GIRRIHRLVSM--SNMKYDAITGSGIEVGERVPI 376 (418)
T ss_pred CcceehhHHHHHHHHh-------CCChhhhhcCC--CHHHHHHHHhCCCEEEEEecc
Confidence 5799999999998765 99988 67444 444566678899999987643
No 214
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=25.22 E-value=1e+02 Score=19.94 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=18.7
Q ss_pred cChHHHHHHHHHHHHHhcCCceE
Q 028511 131 KGIAKRLIAKAEAQARGWGCRSI 153 (208)
Q Consensus 131 ~Gig~~ll~~~~~~~~~~g~~~i 153 (208)
.+|...+++.+.+.+++.|.+++
T Consensus 4 ~sia~~iv~~v~~~a~~~~~~~V 26 (115)
T TIGR00100 4 LSLAEAMLEIVEEQAEKHQAKKV 26 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeE
Confidence 36888999999999988877663
No 215
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.00 E-value=1.1e+02 Score=20.21 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=19.3
Q ss_pred cChHHHHHHHHHHHHHhcCCceEE
Q 028511 131 KGIAKRLIAKAEAQARGWGCRSIA 154 (208)
Q Consensus 131 ~Gig~~ll~~~~~~~~~~g~~~i~ 154 (208)
.+|...+++.+++.+++.|.+++.
T Consensus 4 ~si~~~il~~v~~~a~~~~~~rV~ 27 (124)
T PRK00762 4 LSMACEIVEAVIDTAEKNNATEVT 27 (124)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEE
Confidence 367889999999999988777644
No 216
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=24.87 E-value=47 Score=20.88 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=18.9
Q ss_pred eEEEEeecCChhhHhhhhh-CCCeEEecCC
Q 028511 152 SIALHCDFNNLGATKLYKG-QGFKCVKVPE 180 (208)
Q Consensus 152 ~i~l~~~~~n~~a~~~y~k-~GF~~~~~~~ 180 (208)
.+.+.|. +=.+++.||++ +||+......
T Consensus 4 Hi~i~v~-d~~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 4 HIAIRVK-DLEKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEES-CHHHHHHHHHHTTTSEEEEEEE
T ss_pred EEEEEcC-CHHHHHHHHHHHhCCcEEeeec
Confidence 3444443 33478999975 7999887654
No 217
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=24.84 E-value=63 Score=20.53 Aligned_cols=27 Identities=4% Similarity=0.021 Sum_probs=17.8
Q ss_pred ceEEEEeecCChhhHhhhhh-CCCeEEec
Q 028511 151 RSIALHCDFNNLGATKLYKG-QGFKCVKV 178 (208)
Q Consensus 151 ~~i~l~~~~~n~~a~~~y~k-~GF~~~~~ 178 (208)
..+.+.|. +=.+|.+||+. +||+....
T Consensus 4 ~~v~l~v~-Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 4 GYLGVESS-DLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cEEEEEeC-CHHHHHHHHHhccCceeccC
Confidence 34555554 33478999976 79987644
No 218
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=24.82 E-value=1.5e+02 Score=23.66 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=39.0
Q ss_pred EEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCCh-hhHhhhhhCCCeEEecCCCCCCC
Q 028511 119 ISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNL-GATKLYKGQGFKCVKVPEGANWP 185 (208)
Q Consensus 119 i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~-~a~~~y~k~GF~~~~~~~~~~~~ 185 (208)
.+.+.+||.+ .|+...+++.+.+ .-..+++.|.+... +-.+.+.+ ||+........-|+
T Consensus 289 ~D~v~lDPPR--~G~~~~~l~~l~~-----~~~ivyvSC~p~tlarDl~~L~~-gY~l~~v~~~DmFP 348 (362)
T PRK05031 289 FSTIFVDPPR--AGLDDETLKLVQA-----YERILYISCNPETLCENLETLSQ-THKVERFALFDQFP 348 (362)
T ss_pred CCEEEECCCC--CCCcHHHHHHHHc-----cCCEEEEEeCHHHHHHHHHHHcC-CcEEEEEEEcccCC
Confidence 3568999994 6888888888865 13458888887332 11344544 99988765544343
No 219
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=24.81 E-value=1.5e+02 Score=25.39 Aligned_cols=44 Identities=20% Similarity=0.108 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 136 RLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 136 ~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
++++.+.+.+++.|...-.+.....++...+++..+||+.....
T Consensus 482 ~~i~~vi~~a~~~g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~ 525 (565)
T TIGR01417 482 RLIKLVIDAAKAEGIWVGMCGEMAGDERAIPLLLGLGLRELSMS 525 (565)
T ss_pred HHHHHHHHHHHHcCCeEEEeCCcCCCHHHHHHHHHCCCCEEEEC
Confidence 48888888898888876555566788899999999999998754
No 220
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=24.66 E-value=1.8e+02 Score=17.88 Aligned_cols=39 Identities=8% Similarity=0.046 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeE
Q 028511 134 AKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKC 175 (208)
Q Consensus 134 g~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~ 175 (208)
|-.++..+.+.+++.|.+-....+ ++...+.+++.|+..
T Consensus 56 gl~~L~~l~~~~~~~g~~l~l~~~---~~~v~~~l~~~gl~~ 94 (100)
T cd06844 56 GTGVLLERSRLAEAVGGQFVLTGI---SPAVRITLTESGLDK 94 (100)
T ss_pred HHHHHHHHHHHHHHcCCEEEEECC---CHHHHHHHHHhCchh
Confidence 555677777778777766433333 447788899988764
No 221
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=24.58 E-value=1.5e+02 Score=18.29 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEE
Q 028511 134 AKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCV 176 (208)
Q Consensus 134 g~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~ 176 (208)
|-.++..+.+.+++.|....... -++...++++..|+...
T Consensus 60 gl~~L~~~~~~~~~~~~~~~l~~---~~~~~~~~l~~~~l~~~ 99 (108)
T TIGR00377 60 GLGVLLGRYKQVRRVGGQLVLVS---VSPRVARLLDITGLLRI 99 (108)
T ss_pred cHHHHHHHHHHHHhcCCEEEEEe---CCHHHHHHHHHhChhhe
Confidence 44566667777777776633333 34577899999998764
No 222
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=24.53 E-value=1.5e+02 Score=22.29 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=34.7
Q ss_pred EEEEEEeCccccccChHHHHHHHHHHHHHhc-CCceEEEEeec
Q 028511 118 YISNVAVREKFRRKGIAKRLIAKAEAQARGW-GCRSIALHCDF 159 (208)
Q Consensus 118 ~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~ 159 (208)
|+....+-|.|--.|++++-|+...+++... |-+.|++..-.
T Consensus 145 Ylgs~r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaIS 187 (259)
T COG0623 145 YLGSERVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAIS 187 (259)
T ss_pred eccceeecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeec
Confidence 5566789999999999999999999987754 88878776544
No 223
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=24.07 E-value=29 Score=20.87 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.9
Q ss_pred EEEEeecCChhhHhhhhhC
Q 028511 153 IALHCDFNNLGATKLYKGQ 171 (208)
Q Consensus 153 i~l~~~~~n~~a~~~y~k~ 171 (208)
++|.+++.|..|+..|...
T Consensus 20 LyLDTHP~d~~Al~~y~~~ 38 (78)
T PF12652_consen 20 LYLDTHPDDQEALEYYNEY 38 (78)
T ss_pred HHhcCCCCcHHHHHHHHHH
Confidence 7889999999998888653
No 224
>PRK10291 glyoxalase I; Provisional
Probab=24.07 E-value=66 Score=20.73 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=13.9
Q ss_pred ChhhHhhhhh-CCCeEEec
Q 028511 161 NLGATKLYKG-QGFKCVKV 178 (208)
Q Consensus 161 n~~a~~~y~k-~GF~~~~~ 178 (208)
=.+++.||++ +||+....
T Consensus 7 le~s~~FY~~~LG~~~~~~ 25 (129)
T PRK10291 7 LQRSIDFYTNVLGMKLLRT 25 (129)
T ss_pred HHHHHHHHHhccCCEEEEe
Confidence 3478999965 89997654
No 225
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=24.05 E-value=57 Score=20.27 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=13.9
Q ss_pred CChhhHhhhhh-CCCeEEe
Q 028511 160 NNLGATKLYKG-QGFKCVK 177 (208)
Q Consensus 160 ~n~~a~~~y~k-~GF~~~~ 177 (208)
+=.++..||++ +||+...
T Consensus 10 Dl~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 10 DPEAAAAFYADVLGLDVVM 28 (112)
T ss_pred CHHHHHHHHHHhcCceEEE
Confidence 33478999987 9999764
No 226
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=23.92 E-value=99 Score=19.14 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=16.0
Q ss_pred CChhhHhhhhh-CCCeEEecCC
Q 028511 160 NNLGATKLYKG-QGFKCVKVPE 180 (208)
Q Consensus 160 ~n~~a~~~y~k-~GF~~~~~~~ 180 (208)
+-.++++||++ +||+......
T Consensus 12 d~~~~~~FY~~~lg~~~~~~~~ 33 (117)
T cd07240 12 DLERALEFYTDVLGLTVLDRDA 33 (117)
T ss_pred CHHHHHHHHHhccCcEEEeecC
Confidence 34478999987 8999886553
No 227
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=23.85 E-value=1.4e+02 Score=23.74 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=5.3
Q ss_pred hhhhhCCCeEEe
Q 028511 166 KLYKGQGFKCVK 177 (208)
Q Consensus 166 ~~y~k~GF~~~~ 177 (208)
++.+.+|-+.+.
T Consensus 302 qIL~dLGi~~ir 313 (339)
T PRK09314 302 QILKYLGIKDIK 313 (339)
T ss_pred HHHHHCCCCEEE
Confidence 344444444443
No 228
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=23.84 E-value=1.2e+02 Score=19.67 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=18.4
Q ss_pred cChHHHHHHHHHHHHHhcCCceE
Q 028511 131 KGIAKRLIAKAEAQARGWGCRSI 153 (208)
Q Consensus 131 ~Gig~~ll~~~~~~~~~~g~~~i 153 (208)
.+|...+++.+++.+++.|.+++
T Consensus 4 lsi~~~iv~~v~~~a~~~~~~rV 26 (113)
T PRK12380 4 LSLCQSAVEIIQRQAEQHDVKRV 26 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeE
Confidence 36788999999999988876653
No 229
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=23.55 E-value=1.3e+02 Score=16.32 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=18.6
Q ss_pred cccccChHHHHHHHHHHHHHhc
Q 028511 127 KFRRKGIAKRLIAKAEAQARGW 148 (208)
Q Consensus 127 ~~rg~Gig~~ll~~~~~~~~~~ 148 (208)
=||+.-+|..|.+.+-+...+.
T Consensus 5 lYR~stlG~aL~dtLDeli~~~ 26 (49)
T PF02268_consen 5 LYRRSTLGIALTDTLDELIQEG 26 (49)
T ss_dssp GGGCSHHHHHHHHHHHHHHHTT
T ss_pred HHHcchHHHHHHHHHHHHHHcC
Confidence 3899999999999988887764
No 230
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=23.53 E-value=69 Score=20.29 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=18.2
Q ss_pred ceEEEEeecCChhhHhhhhh-CCCeEEecC
Q 028511 151 RSIALHCDFNNLGATKLYKG-QGFKCVKVP 179 (208)
Q Consensus 151 ~~i~l~~~~~n~~a~~~y~k-~GF~~~~~~ 179 (208)
..+.+.|. +=.++.+||++ +||+.....
T Consensus 6 ~hv~l~v~-Dl~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 6 GHVQLRVL-DLEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred eEEEEEeC-CHHHHHHHHHhccCCEeeeec
Confidence 34445443 33488999975 899986653
No 231
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.42 E-value=1.3e+02 Score=23.10 Aligned_cols=36 Identities=6% Similarity=-0.026 Sum_probs=29.3
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec-CC
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF-NN 161 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~-~n 161 (208)
+...|+-.|..-+..++++|.+.|++.+++.+.+ +|
T Consensus 62 ~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN 98 (275)
T PRK14835 62 QREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDN 98 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccc
Confidence 3445777799999999999999999999997544 55
No 232
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=23.29 E-value=1.3e+02 Score=19.05 Aligned_cols=39 Identities=8% Similarity=0.132 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeE
Q 028511 134 AKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKC 175 (208)
Q Consensus 134 g~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~ 175 (208)
|-.++..+.+.++.+|..-..+.+.+ ...+.+++.||..
T Consensus 65 gi~~L~~~~~~~~~~g~~~~l~~~~~---~v~~~l~~~~~~~ 103 (117)
T PF01740_consen 65 GIQALVDIIKELRRRGVQLVLVGLNP---DVRRILERSGLID 103 (117)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESHHH---HHHHHHHHTTGHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCH---HHHHHHHHcCCCh
Confidence 55677888888888888855444443 7788899999863
No 233
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=23.22 E-value=1.9e+02 Score=17.61 Aligned_cols=41 Identities=15% Similarity=0.061 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEe
Q 028511 134 AKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVK 177 (208)
Q Consensus 134 g~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~ 177 (208)
|-.++..+...++++|..-....+ ++...+.+.+.|+...-
T Consensus 58 ~~~~L~~~~~~~~~~~~~~~l~~~---~~~~~~~l~~~g~~~~~ 98 (107)
T cd07042 58 AAEALEELVKDLRKRGVELYLAGL---NPQVRELLERAGLLDEI 98 (107)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecC---CHHHHHHHHHcCcHHHh
Confidence 555666666677777755333333 34778999999987553
No 234
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=23.15 E-value=1e+02 Score=19.12 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=19.3
Q ss_pred eEEEEeecCChhhHhhhhh-CCCeEEecCC
Q 028511 152 SIALHCDFNNLGATKLYKG-QGFKCVKVPE 180 (208)
Q Consensus 152 ~i~l~~~~~n~~a~~~y~k-~GF~~~~~~~ 180 (208)
.+.+.|.. =.+++.||+. +||+......
T Consensus 5 hv~l~v~d-l~~s~~FY~~~LG~~~~~~~~ 33 (138)
T COG0346 5 HVTLAVPD-LEASIDFYTDVLGLRLVKDTV 33 (138)
T ss_pred EEEEeeCC-HhHhHHHHHhhcCCeeeeecc
Confidence 34444443 3589999986 9999987543
No 235
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=22.98 E-value=62 Score=21.54 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=19.8
Q ss_pred EEEeCccccccChHHHHHHHHHH
Q 028511 121 NVAVREKFRRKGIAKRLIAKAEA 143 (208)
Q Consensus 121 ~l~v~p~~rg~Gig~~ll~~~~~ 143 (208)
-+.+||+++|.-|.+.|.+++-.
T Consensus 59 IILTD~D~~Ge~Irk~l~~~l~~ 81 (127)
T COG1658 59 IILTDPDRKGERIRKKLKEYLPG 81 (127)
T ss_pred EEEeCCCcchHHHHHHHHHHhcc
Confidence 36899999999999999987765
No 236
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.66 E-value=1.4e+02 Score=22.46 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=29.4
Q ss_pred ccccccChHHHHHHHHHHHHHhcCCceEEEEeec
Q 028511 126 EKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDF 159 (208)
Q Consensus 126 p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~ 159 (208)
+...|+--|..-+..++++|.+.|++.+++.+.+
T Consensus 31 ~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS 64 (242)
T PRK14838 31 ERSFGHQAGAETVHIITEEAARLGVKFLTLYTFS 64 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4556788899999999999999999999998654
No 237
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=22.57 E-value=2e+02 Score=17.74 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEE
Q 028511 134 AKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCV 176 (208)
Q Consensus 134 g~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~ 176 (208)
|-.++..+.+.+++.|.+-..+.+. +...+.+++.|+...
T Consensus 56 gi~~L~~~~~~~~~~g~~l~l~~~~---~~v~~~l~~~gl~~~ 95 (106)
T TIGR02886 56 GLGVILGRYKKIKNEGGEVIVCNVS---PAVKRLFELSGLFKI 95 (106)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHhCCceE
Confidence 3445556677777778764444343 477899999998754
No 238
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=22.48 E-value=67 Score=19.70 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=14.8
Q ss_pred hhhHhhhhh-CCCeEEecC
Q 028511 162 LGATKLYKG-QGFKCVKVP 179 (208)
Q Consensus 162 ~~a~~~y~k-~GF~~~~~~ 179 (208)
.++.+||++ +||+.....
T Consensus 10 ~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHhccCeEEEEEc
Confidence 478999998 899987654
No 239
>PRK07758 hypothetical protein; Provisional
Probab=22.37 E-value=94 Score=19.48 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=18.6
Q ss_pred ccChHHHHHHHHHHHHHhcCCc
Q 028511 130 RKGIAKRLIAKAEAQARGWGCR 151 (208)
Q Consensus 130 g~Gig~~ll~~~~~~~~~~g~~ 151 (208)
=+|+|..-++.+.+.+.+.|..
T Consensus 72 iknlGkKSL~EIkekL~E~GLs 93 (95)
T PRK07758 72 LHGMGPASLPKLRKALEESGLS 93 (95)
T ss_pred ccCCCHHHHHHHHHHHHHcCCC
Confidence 4789999999999999887753
No 240
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.26 E-value=1.5e+02 Score=22.44 Aligned_cols=36 Identities=8% Similarity=-0.052 Sum_probs=29.3
Q ss_pred ccc-cccChHHHHHHHHHHHHHhcCCceEEEEeec-CC
Q 028511 126 EKF-RRKGIAKRLIAKAEAQARGWGCRSIALHCDF-NN 161 (208)
Q Consensus 126 p~~-rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~-~n 161 (208)
+.. .|+--|..-+..+.++|.+.|++.+++.+.+ +|
T Consensus 47 ~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN 84 (256)
T PRK14828 47 TDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDN 84 (256)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhh
Confidence 344 6777899999999999999999999997653 44
No 241
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=22.13 E-value=1.6e+02 Score=19.18 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHHHHhcCCce---EEEEee---cCChhhHhh
Q 028511 132 GIAKRLIAKAEAQARGWGCRS---IALHCD---FNNLGATKL 167 (208)
Q Consensus 132 Gig~~ll~~~~~~~~~~g~~~---i~l~~~---~~n~~a~~~ 167 (208)
.++.++++-++++|++.|+.+ +++.+. --|+.+.+|
T Consensus 5 Sla~aii~~i~~~A~~~~a~~V~~V~l~IG~ls~v~~~~l~F 46 (115)
T COG0375 5 SLAQAIIELIEEQAEKHGAKRVTAVWLEIGELSCVEPEALRF 46 (115)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEEEEEcceeccCHHHHHH
Confidence 478899999999999998754 444332 235555554
No 242
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=22.11 E-value=2.3e+02 Score=19.91 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEeecCChhh---HhhhhhCCCeEEecCCCC
Q 028511 133 IAKRLIAKAEAQARGWGCRSIALHCDFNNLGA---TKLYKGQGFKCVKVPEGA 182 (208)
Q Consensus 133 ig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a---~~~y~k~GF~~~~~~~~~ 182 (208)
+|..+++.+.+.+++.|+.-..=.|..-|-+. +..-+++||+++...+..
T Consensus 44 va~ai~~~l~~~~~~~gi~LA~QcCEHlNRALvvEr~~a~~~~le~V~VvP~~ 96 (172)
T PF04260_consen 44 VAEAIFEALLEVLKERGIYLAFQCCEHLNRALVVEREVAEKYGLEEVTVVPVP 96 (172)
T ss_dssp HHHHHHHHHHHHHHTTT-EEEEE--GGGTT-EEEEHHHHHHHT--EEE-B-BT
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEchhhhhHHHHhhHHHHhHcCCceEEEEccC
Confidence 78999999999999999987666677767432 467789999999876543
No 243
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=21.98 E-value=89 Score=21.32 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=18.9
Q ss_pred CceEEEEeecCChhhHhhhhh-CCCeEEecC
Q 028511 150 CRSIALHCDFNNLGATKLYKG-QGFKCVKVP 179 (208)
Q Consensus 150 ~~~i~l~~~~~n~~a~~~y~k-~GF~~~~~~ 179 (208)
+..+.+.|. +=.++.+||++ +||+.....
T Consensus 2 l~HI~i~V~-Dle~s~~FY~~~LG~~~~~~~ 31 (157)
T cd08347 2 LHGVTLTVR-DPEATAAFLTDVLGFREVGEE 31 (157)
T ss_pred cccEEEEeC-CHHHHHHHHHHhcCCEEEeee
Confidence 444555444 33478999965 699987654
No 244
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=21.97 E-value=1.1e+02 Score=23.66 Aligned_cols=47 Identities=21% Similarity=0.142 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecCC
Q 028511 134 AKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVPE 180 (208)
Q Consensus 134 g~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~~ 180 (208)
--+++.++.+.+++.|.....+.=...|+....++..+|.+.....+
T Consensus 233 vl~li~~vi~~a~~~g~~vsvCGe~a~~p~~~~~Ll~lGi~~lSv~p 279 (293)
T PF02896_consen 233 VLRLIKQVIDAAHKAGKPVSVCGEMASDPEAIPLLLGLGIRSLSVSP 279 (293)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEESGGGGSHHHHHHHHHHT-SEEEE-G
T ss_pred HHHHHHHHHHHHhhcCcEEEEecCCCCCHHHHHHHHHcCCCEEEECH
Confidence 34788888999999998866666666799999999999999988643
No 245
>PRK14968 putative methyltransferase; Provisional
Probab=21.91 E-value=1e+02 Score=21.31 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEecC
Q 028511 135 KRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKVP 179 (208)
Q Consensus 135 ~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~~ 179 (208)
..+++.+...++..|.-.+.......+.....+..+.||+.....
T Consensus 128 ~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 128 DRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred HHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence 345666666665555433333333345667888999999877543
No 246
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.67 E-value=1.1e+02 Score=19.21 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=16.0
Q ss_pred EEEEeecCChhhHhhhhh-CCCeEEe
Q 028511 153 IALHCDFNNLGATKLYKG-QGFKCVK 177 (208)
Q Consensus 153 i~l~~~~~n~~a~~~y~k-~GF~~~~ 177 (208)
+.+.|. +=.++.+||++ +||+...
T Consensus 4 ~~l~v~-D~~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 4 TIIYVE-DVEKTLEFYERAFGFERRF 28 (125)
T ss_pred EEEEEc-CHHHHHHHHHHhhCCeEEe
Confidence 334333 33488999987 7998754
No 247
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=21.58 E-value=1.8e+02 Score=22.23 Aligned_cols=43 Identities=19% Similarity=0.096 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCeEEec
Q 028511 133 IAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFKCVKV 178 (208)
Q Consensus 133 ig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~~~~~ 178 (208)
--..++..+.+++.+.|..-+...+.+ .....|+..||.....
T Consensus 56 ~~~~~i~~f~~~~~~~~~~~~~~~v~e---~~~~~~~~~g~~~~~~ 98 (299)
T PF09924_consen 56 DRPELIEEFLEFADRNGWKPIFYGVSE---EFLELLEELGFESNRD 98 (299)
T ss_dssp -HHHHHHHHHHHHHHCTS--EEEEE-H---HHHHHHHHHSEEE-GG
T ss_pred HHHHHHHHHHHHHHHCCCceEEEECCH---HHHHHHHHcCCeeecC
Confidence 455799999999999999988888887 5689999999777654
No 248
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=21.49 E-value=63 Score=21.62 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=18.7
Q ss_pred CCceEEEEeecCChhhHhhhh-hCCCeEEec
Q 028511 149 GCRSIALHCDFNNLGATKLYK-GQGFKCVKV 178 (208)
Q Consensus 149 g~~~i~l~~~~~n~~a~~~y~-k~GF~~~~~ 178 (208)
++..+.+.|. +=.++..||+ .+||+....
T Consensus 17 ~i~hv~l~v~-Dl~~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 17 RLLHTMLRVG-DLDKSLDFYTEVLGMKLLRK 46 (150)
T ss_pred eEEEEEEEec-CHHHHHHHHHHhcCCEEEEE
Confidence 4445555554 3348899997 489987543
No 249
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.05 E-value=87 Score=19.78 Aligned_cols=27 Identities=11% Similarity=0.305 Sum_probs=18.2
Q ss_pred eEEEEeecCChhhHhhhhh-CCCeEEecC
Q 028511 152 SIALHCDFNNLGATKLYKG-QGFKCVKVP 179 (208)
Q Consensus 152 ~i~l~~~~~n~~a~~~y~k-~GF~~~~~~ 179 (208)
.+.+.|. +=.++.+||.. +||+.....
T Consensus 5 hi~l~v~-d~~~~~~Fy~~~lG~~~~~~~ 32 (125)
T cd07255 5 AVTLRVA-DLERSLAFYQDVLGLEVLERT 32 (125)
T ss_pred EEEEEEC-CHHHHHHHHHhccCcEEEEcC
Confidence 4445443 33478999985 899988764
No 250
>PLN02300 lactoylglutathione lyase
Probab=21.03 E-value=62 Score=24.64 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=19.3
Q ss_pred CCceEEEEeecCChhhHhhhhh-CCCeEEec
Q 028511 149 GCRSIALHCDFNNLGATKLYKG-QGFKCVKV 178 (208)
Q Consensus 149 g~~~i~l~~~~~n~~a~~~y~k-~GF~~~~~ 178 (208)
++..+.+.|. +=.++++||++ +||+....
T Consensus 24 ~l~Hv~l~V~-Dle~s~~FY~~vLG~~~~~~ 53 (286)
T PLN02300 24 RMLHVVYRVG-DLDRTIKFYTECLGMKLLRK 53 (286)
T ss_pred eEEEEEEEeC-CHHHHHHHHHHhcCCEEEEe
Confidence 4445555554 33489999975 79998653
No 251
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=20.96 E-value=3.9e+02 Score=20.44 Aligned_cols=31 Identities=23% Similarity=0.080 Sum_probs=25.4
Q ss_pred EEEeCccccccChHHHH----HHHHHHHHHhcCCc
Q 028511 121 NVAVREKFRRKGIAKRL----IAKAEAQARGWGCR 151 (208)
Q Consensus 121 ~l~v~p~~rg~Gig~~l----l~~~~~~~~~~g~~ 151 (208)
..+++|+++.--.|+-| ++.+.+.|+++|.+
T Consensus 205 NgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~ 239 (264)
T PF07395_consen 205 NGGYDPECRDFSPGSILMWLNIQDAWEYCRAQGKP 239 (264)
T ss_pred cCccCcccccCCCccEEEEeeHHHHHHHHHHhCCc
Confidence 45789999999999987 47778888887766
No 252
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=20.86 E-value=1.7e+02 Score=19.59 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=28.8
Q ss_pred EEEeCccccccChHHHHHHHHHHHHHhc-CCceEEEEeecCC
Q 028511 121 NVAVREKFRRKGIAKRLIAKAEAQARGW-GCRSIALHCDFNN 161 (208)
Q Consensus 121 ~l~v~p~~rg~Gig~~ll~~~~~~~~~~-g~~~i~l~~~~~n 161 (208)
++.-..-|||+|+....++-.-..+... .-..|.+...+++
T Consensus 9 HLlCmq~y~GkGYS~~FveN~d~I~~rL~~ge~i~lV~g~DD 50 (135)
T COG3543 9 HLLCMQGYQGKGYSPAFVENYDAIAERLKAGEDIKLVDGPDD 50 (135)
T ss_pred hhheeeecccccCCHHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 4555667999999999998888777765 3334666555544
No 253
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=20.64 E-value=77 Score=19.97 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=18.9
Q ss_pred CceEEEEeecCChhhHhhhhh-CCCeEEecC
Q 028511 150 CRSIALHCDFNNLGATKLYKG-QGFKCVKVP 179 (208)
Q Consensus 150 ~~~i~l~~~~~n~~a~~~y~k-~GF~~~~~~ 179 (208)
+..+.+.|. +=.++.+||.+ +||+.....
T Consensus 5 i~hi~l~v~-d~~~~~~Fy~~~lG~~~~~~~ 34 (121)
T cd07266 5 LGHVELRVT-DLEKSREFYVDVLGLVETEED 34 (121)
T ss_pred eeEEEEEcC-CHHHHHHHHHhccCCEEeccC
Confidence 344555553 33478999986 899976543
No 254
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=20.57 E-value=2.5e+02 Score=19.48 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=25.4
Q ss_pred eCccccccChHHHHHHHHHHHHHhcCCceEEEE
Q 028511 124 VREKFRRKGIAKRLIAKAEAQARGWGCRSIALH 156 (208)
Q Consensus 124 v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~ 156 (208)
.+|+|+|.- ...+++++.+.+++.|+....+.
T Consensus 63 td~~~k~~~-S~~lL~~~~~~~~~~g~~i~niD 94 (155)
T TIGR00151 63 TDPRWKGAD-SRVLLRHAVALIKEKGYRIGNVD 94 (155)
T ss_pred CChhhCCCC-HHHHHHHHHHHHHHcCCEEEEEE
Confidence 467777765 88999999999999988765554
No 255
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.42 E-value=1.8e+02 Score=22.01 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=27.5
Q ss_pred cccChHHHHHHHHHHHHHhcCCceEEEEeec-CC
Q 028511 129 RRKGIAKRLIAKAEAQARGWGCRSIALHCDF-NN 161 (208)
Q Consensus 129 rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~-~n 161 (208)
.|.--|..-+..++++|.+.|++.+++.+.. +|
T Consensus 46 ~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN 79 (251)
T PRK14830 46 AGHKAGMDTVKKITKAASELGVKVLTLYAFSTEN 79 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhh
Confidence 4666788999999999999999999988644 44
No 256
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.38 E-value=79 Score=19.49 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.1
Q ss_pred ChhhHhhhhh-CCCeEEecC
Q 028511 161 NLGATKLYKG-QGFKCVKVP 179 (208)
Q Consensus 161 n~~a~~~y~k-~GF~~~~~~ 179 (208)
-.++.+||.+ +||+.....
T Consensus 9 ~~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 9 QDKALAFYTEKLGFEVREDV 28 (119)
T ss_pred HHHHHHHHHhccCeEEEEee
Confidence 3478999987 899988654
No 257
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=20.28 E-value=96 Score=19.53 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=18.8
Q ss_pred eEEEEeecCChhhHhhhhh-CCCeEEecC
Q 028511 152 SIALHCDFNNLGATKLYKG-QGFKCVKVP 179 (208)
Q Consensus 152 ~i~l~~~~~n~~a~~~y~k-~GF~~~~~~ 179 (208)
.+.+.|. +=.++.+||++ +||+.....
T Consensus 3 hv~l~v~-d~~~~~~fy~~~lG~~~~~~~ 30 (128)
T cd07249 3 HIGIAVP-DLEAAIKFYRDVLGVGPWEEE 30 (128)
T ss_pred EEEEEeC-CHHHHHHHHHHhhCCCCcccc
Confidence 3555553 34478999987 899987654
No 258
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=20.25 E-value=70 Score=19.23 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=19.3
Q ss_pred EEEeCccccccChHHHHHHHHHH
Q 028511 121 NVAVREKFRRKGIAKRLIAKAEA 143 (208)
Q Consensus 121 ~l~v~p~~rg~Gig~~ll~~~~~ 143 (208)
-+.++++..|+.+.+++.+.+..
T Consensus 49 IiltD~D~aG~~i~~~~~~~l~~ 71 (81)
T cd01027 49 IILTDPDRKGEKIRKKLSEYLSG 71 (81)
T ss_pred EEEECCCHHHHHHHHHHHHHhcc
Confidence 47899999999999998887643
No 259
>PLN02979 glycolate oxidase
Probab=20.05 E-value=2e+02 Score=23.08 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=32.7
Q ss_pred eEEEEEEeCccccccChHHHHHHHHHHHHHhcCCceEEEEeecCChhhHhhhhhCCCe
Q 028511 117 AYISNVAVREKFRRKGIAKRLIAKAEAQARGWGCRSIALHCDFNNLGATKLYKGQGFK 174 (208)
Q Consensus 117 ~~i~~l~v~p~~rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~n~~a~~~y~k~GF~ 174 (208)
.++ .+|+.++ ++ +...+++.|++.|++.+.+.+...-..-+.--.++||.
T Consensus 123 ~wf-QLY~~~D---r~----~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~ 172 (366)
T PLN02979 123 RFF-QLYVYKN---RN----VVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFT 172 (366)
T ss_pred eEE-EEeecCC---HH----HHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCC
Confidence 344 6777665 23 55666677888899999999886554334333466764
Done!