Query 028512
Match_columns 208
No_of_seqs 297 out of 1616
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 12:39:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1719 Dual specificity phosp 100.0 4E-42 8.8E-47 249.9 15.3 170 35-206 1-171 (183)
2 smart00195 DSPc Dual specifici 100.0 7.4E-35 1.6E-39 216.2 16.4 137 61-203 1-137 (138)
3 KOG1718 Dual specificity phosp 100.0 1.7E-34 3.8E-39 212.9 15.2 147 56-208 12-158 (198)
4 PRK12361 hypothetical protein; 100.0 1.3E-34 2.7E-39 258.4 16.7 170 32-205 63-237 (547)
5 cd00127 DSPc Dual specificity 100.0 9.4E-33 2E-37 204.7 15.6 138 61-202 2-139 (139)
6 PF00782 DSPc: Dual specificit 100.0 1.4E-32 3E-37 202.6 10.8 133 68-204 1-133 (133)
7 KOG1716 Dual specificity phosp 100.0 3E-29 6.5E-34 206.9 16.4 145 60-207 74-218 (285)
8 KOG1717 Dual specificity phosp 100.0 1.1E-29 2.3E-34 200.1 12.4 142 60-205 171-312 (343)
9 PTZ00242 protein tyrosine phos 100.0 3.8E-28 8.2E-33 185.1 16.6 143 59-206 9-159 (166)
10 PTZ00393 protein tyrosine phos 100.0 1.3E-27 2.8E-32 188.5 16.0 135 68-208 94-232 (241)
11 KOG1720 Protein tyrosine phosp 99.9 7.2E-24 1.6E-28 162.2 14.3 119 80-203 88-206 (225)
12 PF03162 Y_phosphatase2: Tyros 99.8 2.5E-21 5.5E-26 147.1 7.6 143 59-205 5-150 (164)
13 PF05706 CDKN3: Cyclin-depende 99.8 4.2E-20 9.1E-25 138.2 7.9 102 76-178 61-168 (168)
14 COG2453 CDC14 Predicted protei 99.8 9.1E-19 2E-23 135.4 13.9 99 105-204 67-166 (180)
15 KOG2836 Protein tyrosine phosp 99.8 5.8E-19 1.3E-23 126.1 11.6 130 69-204 20-155 (173)
16 TIGR01244 conserved hypothetic 99.8 1E-17 2.3E-22 123.6 12.3 120 62-188 3-128 (135)
17 PF04273 DUF442: Putative phos 99.6 1E-15 2.3E-20 108.6 7.5 97 62-164 3-105 (110)
18 PLN02727 NAD kinase 99.6 1.3E-14 2.9E-19 132.3 10.0 104 67-173 262-370 (986)
19 smart00012 PTPc_DSPc Protein t 99.6 7.2E-14 1.6E-18 97.8 11.5 89 113-201 5-102 (105)
20 smart00404 PTPc_motif Protein 99.6 7.2E-14 1.6E-18 97.8 11.5 89 113-201 5-102 (105)
21 KOG1572 Predicted protein tyro 99.5 2.9E-13 6.3E-18 106.0 11.6 138 61-202 60-204 (249)
22 COG3453 Uncharacterized protei 99.4 1.6E-12 3.6E-17 91.3 10.6 116 62-184 4-125 (130)
23 cd00047 PTPc Protein tyrosine 99.4 1E-12 2.2E-17 105.4 10.8 90 111-200 130-227 (231)
24 smart00194 PTPc Protein tyrosi 99.4 3.6E-12 7.8E-17 103.9 11.0 82 119-200 167-254 (258)
25 PRK15375 pathogenicity island 99.4 4.9E-12 1.1E-16 109.4 12.2 96 111-206 423-530 (535)
26 PF13350 Y_phosphatase3: Tyros 99.4 1.4E-12 2.9E-17 99.5 7.7 111 67-179 20-158 (164)
27 KOG2283 Clathrin coat dissocia 99.2 4.3E-11 9.3E-16 103.3 9.9 138 62-205 16-174 (434)
28 PHA02742 protein tyrosine phos 99.2 2E-10 4.2E-15 95.8 12.3 89 119-207 192-301 (303)
29 PHA02740 protein tyrosine phos 99.2 2.6E-10 5.7E-15 94.7 11.8 82 119-200 187-282 (298)
30 PHA02746 protein tyrosine phos 99.2 3.4E-10 7.3E-15 95.2 11.7 91 111-201 202-309 (323)
31 PHA02747 protein tyrosine phos 99.2 3.9E-10 8.4E-15 94.4 11.5 80 119-198 193-288 (312)
32 COG5350 Predicted protein tyro 99.1 8.1E-10 1.8E-14 81.1 9.6 117 80-197 26-147 (172)
33 PF00102 Y_phosphatase: Protei 99.1 9.1E-10 2E-14 87.9 10.3 90 112-201 136-232 (235)
34 PHA02738 hypothetical protein; 99.1 1.1E-09 2.3E-14 92.1 11.1 83 118-200 187-288 (320)
35 KOG0792 Protein tyrosine phosp 99.0 3.2E-09 6.9E-14 98.0 9.8 82 119-200 1037-1124(1144)
36 PF14566 PTPlike_phytase: Inos 99.0 1.4E-09 3.1E-14 81.6 6.0 64 103-168 85-148 (149)
37 KOG0790 Protein tyrosine phosp 98.9 2.7E-09 5.9E-14 90.5 7.3 123 78-200 372-515 (600)
38 COG2365 Protein tyrosine/serin 98.9 5.8E-09 1.3E-13 84.6 8.2 126 63-192 50-184 (249)
39 COG5599 PTP2 Protein tyrosine 98.9 3.8E-09 8.3E-14 84.3 6.7 92 111-206 185-294 (302)
40 KOG2386 mRNA capping enzyme, g 98.7 1.5E-08 3.2E-13 85.9 6.0 142 63-205 36-185 (393)
41 KOG0791 Protein tyrosine phosp 98.7 1.8E-07 4E-12 77.9 10.3 91 115-205 257-353 (374)
42 PF04179 Init_tRNA_PT: Initiat 98.5 6.7E-06 1.4E-10 71.8 14.2 135 63-201 291-449 (451)
43 KOG0789 Protein tyrosine phosp 98.4 1.6E-06 3.5E-11 75.2 10.2 60 143-202 298-363 (415)
44 KOG0793 Protein tyrosine phosp 98.3 2.5E-06 5.5E-11 76.3 7.4 87 114-200 896-989 (1004)
45 KOG4228 Protein tyrosine phosp 98.0 1.3E-05 2.7E-10 75.3 7.3 80 118-200 703-791 (1087)
46 KOG4228 Protein tyrosine phosp 97.9 3E-05 6.5E-10 72.9 7.7 62 144-205 1018-1084(1087)
47 PF14671 DSPn: Dual specificit 97.2 0.0013 2.9E-08 48.6 6.3 68 119-187 39-113 (141)
48 KOG4471 Phosphatidylinositol 3 96.0 0.014 2.9E-07 52.2 5.4 34 131-164 361-394 (717)
49 PF06602 Myotub-related: Myotu 93.7 0.16 3.4E-06 43.5 5.7 24 142-165 229-252 (353)
50 cd01518 RHOD_YceA Member of th 93.1 0.66 1.4E-05 31.7 7.1 29 142-173 59-87 (101)
51 PLN02160 thiosulfate sulfurtra 93.1 0.18 3.8E-06 37.0 4.3 29 141-172 78-106 (136)
52 KOG1089 Myotubularin-related p 92.2 0.27 5.7E-06 44.3 5.0 33 132-164 331-364 (573)
53 COG0607 PspE Rhodanese-related 91.6 0.53 1.2E-05 32.3 5.2 70 83-172 16-86 (110)
54 PRK01415 hypothetical protein; 90.5 0.68 1.5E-05 37.6 5.4 29 142-173 169-197 (247)
55 cd01448 TST_Repeat_1 Thiosulfa 90.0 1.5 3.2E-05 31.0 6.3 30 142-173 77-106 (122)
56 PRK00142 putative rhodanese-re 84.3 2 4.4E-05 36.1 4.9 28 143-173 170-197 (314)
57 COG1054 Predicted sulfurtransf 83.3 3.6 7.8E-05 34.2 5.8 91 64-172 105-197 (308)
58 cd01533 4RHOD_Repeat_2 Member 82.6 4.1 8.8E-05 28.1 5.2 27 143-172 65-91 (109)
59 PF00581 Rhodanese: Rhodanese- 81.6 4.7 0.0001 27.4 5.3 81 85-173 11-98 (113)
60 cd01523 RHOD_Lact_B Member of 80.9 1.9 4.1E-05 29.3 2.9 29 142-173 59-87 (100)
61 TIGR03865 PQQ_CXXCW PQQ-depend 76.3 6.4 0.00014 29.7 4.8 29 142-172 114-142 (162)
62 cd01522 RHOD_1 Member of the R 75.2 6.3 0.00014 27.7 4.4 28 142-172 62-89 (117)
63 cd01520 RHOD_YbbB Member of th 74.2 9.5 0.00021 27.2 5.2 30 141-172 83-112 (128)
64 PRK05569 flavodoxin; Provision 73.6 31 0.00067 24.8 8.1 92 108-206 48-140 (141)
65 PF04343 DUF488: Protein of un 73.2 15 0.00033 26.0 6.0 39 80-118 7-52 (122)
66 PF03861 ANTAR: ANTAR domain; 73.1 4.4 9.5E-05 24.7 2.7 25 160-184 16-40 (56)
67 cd01528 RHOD_2 Member of the R 71.8 9.3 0.0002 25.8 4.4 28 143-173 57-84 (101)
68 PRK05320 rhodanese superfamily 69.5 11 0.00023 30.9 4.9 28 143-173 174-201 (257)
69 PRK11784 tRNA 2-selenouridine 69.2 20 0.00044 30.6 6.7 20 143-162 87-106 (345)
70 PRK05600 thiamine biosynthesis 68.3 8 0.00017 33.3 4.2 25 145-172 333-357 (370)
71 PF03668 ATP_bind_2: P-loop AT 68.0 11 0.00024 31.3 4.7 17 146-162 244-260 (284)
72 COG1660 Predicted P-loop-conta 67.6 11 0.00024 31.0 4.5 17 146-162 245-261 (286)
73 PF10302 DUF2407: DUF2407 ubiq 66.5 2.9 6.3E-05 28.8 0.9 10 145-154 86-95 (97)
74 KOG1530 Rhodanese-related sulf 65.5 14 0.0003 27.0 4.2 73 80-163 31-107 (136)
75 PRK09875 putative hydrolase; P 65.4 43 0.00094 27.9 7.8 19 78-96 39-57 (292)
76 cd01532 4RHOD_Repeat_1 Member 64.9 12 0.00026 24.9 3.8 28 144-172 50-77 (92)
77 TIGR03167 tRNA_sel_U_synt tRNA 64.3 23 0.0005 29.8 6.1 27 144-172 74-100 (311)
78 PF02673 BacA: Bacitracin resi 64.2 9.1 0.0002 31.3 3.6 27 152-180 159-185 (259)
79 PRK05416 glmZ(sRNA)-inactivati 63.5 15 0.00032 30.5 4.8 18 146-163 247-264 (288)
80 cd01534 4RHOD_Repeat_3 Member 63.1 9.5 0.00021 25.5 3.0 26 144-172 56-81 (95)
81 PRK10886 DnaA initiator-associ 63.1 22 0.00048 27.8 5.4 38 127-167 24-61 (196)
82 smart00400 ZnF_CHCC zinc finge 61.9 11 0.00024 22.8 2.8 32 148-181 23-54 (55)
83 cd01525 RHOD_Kc Member of the 61.7 13 0.00029 25.1 3.6 26 144-172 65-90 (105)
84 PRK13938 phosphoheptose isomer 61.0 28 0.00061 27.1 5.7 42 125-169 26-67 (196)
85 TIGR00853 pts-lac PTS system, 60.5 7.4 0.00016 26.6 2.1 17 145-162 4-20 (95)
86 PF02571 CbiJ: Precorrin-6x re 60.1 5.1 0.00011 32.6 1.4 81 67-149 46-135 (249)
87 PRK12554 undecaprenyl pyrophos 59.8 11 0.00024 31.2 3.3 26 153-180 166-191 (276)
88 PRK08057 cobalt-precorrin-6x r 59.6 6.2 0.00013 32.1 1.8 79 67-149 45-132 (248)
89 cd01526 RHOD_ThiF Member of th 59.6 11 0.00025 26.5 3.1 28 142-172 70-97 (122)
90 TIGR00753 undec_PP_bacA undeca 59.0 12 0.00025 30.6 3.3 26 153-180 160-185 (255)
91 PRK00281 undecaprenyl pyrophos 58.3 13 0.00027 30.7 3.4 26 153-180 164-189 (268)
92 COG0279 GmhA Phosphoheptose is 58.3 20 0.00043 27.4 4.1 31 127-160 24-54 (176)
93 PRK10287 thiosulfate:cyanide s 58.2 22 0.00049 24.6 4.2 27 143-172 59-85 (104)
94 cd01444 GlpE_ST GlpE sulfurtra 58.1 14 0.0003 24.4 3.2 29 141-172 53-81 (96)
95 cd01531 Acr2p Eukaryotic arsen 57.8 27 0.00059 24.1 4.7 22 143-164 61-82 (113)
96 cd01447 Polysulfide_ST Polysul 57.4 13 0.00028 24.9 3.0 28 142-172 59-86 (103)
97 COG0794 GutQ Predicted sugar p 57.1 29 0.00063 27.3 5.1 36 128-169 26-61 (202)
98 PRK15043 transcriptional regul 57.0 26 0.00056 28.4 4.9 61 144-204 162-234 (243)
99 cd01527 RHOD_YgaP Member of th 56.9 15 0.00032 24.6 3.2 24 142-167 52-75 (99)
100 cd01530 Cdc25 Cdc25 phosphatas 56.8 13 0.00028 26.4 3.0 25 142-168 66-91 (121)
101 cd01519 RHOD_HSP67B2 Member of 56.6 13 0.00028 25.2 2.8 27 143-172 65-91 (106)
102 cd01529 4RHOD_Repeats Member o 56.5 13 0.00028 24.8 2.8 28 142-172 54-81 (96)
103 PF04364 DNA_pol3_chi: DNA pol 56.5 23 0.00051 25.8 4.3 25 130-154 15-39 (137)
104 COG2927 HolC DNA polymerase II 56.4 14 0.0003 27.4 3.0 22 132-153 17-38 (144)
105 PF13292 DXP_synthase_N: 1-deo 56.3 16 0.00035 30.0 3.7 41 104-152 229-269 (270)
106 cd01443 Cdc25_Acr2p Cdc25 enzy 54.5 36 0.00078 23.5 4.9 19 144-162 66-84 (113)
107 PRK05728 DNA polymerase III su 53.4 23 0.00049 26.1 3.8 27 128-154 13-39 (142)
108 TIGR00204 dxs 1-deoxy-D-xylulo 53.3 20 0.00044 33.1 4.3 47 104-158 232-278 (617)
109 COG1154 Dxs Deoxyxylulose-5-ph 52.7 21 0.00045 32.8 4.1 48 102-157 235-282 (627)
110 cd05567 PTS_IIB_mannitol PTS_I 52.0 16 0.00035 24.2 2.6 16 145-160 1-16 (87)
111 TIGR02981 phageshock_pspE phag 51.7 18 0.00039 24.9 2.9 27 143-172 57-83 (101)
112 PRK00414 gmhA phosphoheptose i 51.5 39 0.00084 26.1 5.1 34 127-163 27-60 (192)
113 TIGR00715 precor6x_red precorr 50.2 9.3 0.0002 31.2 1.4 87 67-155 46-138 (256)
114 PRK11493 sseA 3-mercaptopyruva 49.8 13 0.00029 30.5 2.3 28 142-172 229-256 (281)
115 cd01521 RHOD_PspE2 Member of t 48.7 28 0.00061 23.9 3.6 30 141-172 61-91 (110)
116 PRK00162 glpE thiosulfate sulf 48.6 57 0.0012 22.2 5.1 29 142-173 56-84 (108)
117 PRK06646 DNA polymerase III su 47.0 32 0.0007 25.8 3.8 27 128-154 13-39 (154)
118 PF01807 zf-CHC2: CHC2 zinc fi 46.2 24 0.00052 24.1 2.8 35 148-184 54-88 (97)
119 PF13580 SIS_2: SIS domain; PD 44.7 67 0.0015 23.2 5.2 34 127-163 18-51 (138)
120 PF02126 PTE: Phosphotriestera 43.7 73 0.0016 26.8 5.8 34 140-175 151-184 (308)
121 COG3707 AmiR Response regulato 43.2 28 0.0006 27.2 3.0 22 163-184 151-172 (194)
122 PF01964 ThiC: ThiC family; I 42.6 75 0.0016 27.8 5.7 138 62-201 60-241 (420)
123 PRK05772 translation initiatio 41.8 68 0.0015 27.7 5.4 15 141-155 164-178 (363)
124 PF11848 DUF3368: Domain of un 41.3 73 0.0016 18.6 4.1 40 158-199 3-44 (48)
125 PF14532 Sigma54_activ_2: Sigm 40.9 70 0.0015 22.9 4.8 33 128-160 5-37 (138)
126 TIGR03642 cas_csx13 CRISPR-ass 40.5 1.1E+02 0.0024 22.1 5.6 58 111-171 54-116 (124)
127 PLN02225 1-deoxy-D-xylulose-5- 40.3 45 0.00097 31.4 4.3 46 104-157 320-367 (701)
128 PRK06036 translation initiatio 40.0 61 0.0013 27.7 4.8 18 141-158 145-162 (339)
129 PF09707 Cas_Cas2CT1978: CRISP 39.8 16 0.00034 24.7 1.0 19 58-76 18-36 (86)
130 COG1968 BacA Undecaprenyl pyro 39.3 38 0.00082 27.9 3.3 25 153-179 165-189 (270)
131 TIGR01550 DOC_P1 death-on-curi 39.2 76 0.0016 22.6 4.6 52 129-185 50-105 (121)
132 PRK09629 bifunctional thiosulf 38.8 58 0.0013 30.2 4.9 29 141-172 220-248 (610)
133 TIGR03573 WbuX N-acetyl sugar 38.8 66 0.0014 27.3 4.9 32 151-183 283-314 (343)
134 PRK07411 hypothetical protein; 38.4 39 0.00085 29.3 3.5 28 143-173 341-368 (390)
135 PF12554 MOZART1: Mitotic-spin 38.3 87 0.0019 18.6 4.5 31 154-185 18-48 (48)
136 PRK09590 celB cellobiose phosp 38.1 30 0.00065 24.1 2.3 14 145-158 2-15 (104)
137 PRK11449 putative deoxyribonuc 37.7 71 0.0015 26.0 4.8 57 127-183 110-172 (258)
138 COG3564 Uncharacterized protei 37.6 49 0.0011 22.7 3.1 26 130-155 10-35 (116)
139 KOG1004 Exosomal 3'-5' exoribo 37.1 83 0.0018 25.0 4.7 40 143-184 184-223 (230)
140 COG0084 TatD Mg-dependent DNas 36.9 55 0.0012 26.8 3.9 32 128-159 109-140 (256)
141 cd05006 SIS_GmhA Phosphoheptos 36.4 1.2E+02 0.0026 22.7 5.7 34 126-162 15-48 (177)
142 TIGR00640 acid_CoA_mut_C methy 35.5 38 0.00082 24.6 2.6 63 29-95 46-114 (132)
143 COG0205 PfkA 6-phosphofructoki 35.4 2E+02 0.0043 24.7 7.2 88 80-167 88-185 (347)
144 PF02302 PTS_IIB: PTS system, 35.3 27 0.00058 23.0 1.6 16 146-161 1-16 (90)
145 TIGR01460 HAD-SF-IIA Haloacid 34.7 2.1E+02 0.0047 22.6 7.1 70 130-200 16-98 (236)
146 cd07937 DRE_TIM_PC_TC_5S Pyruv 34.6 2.6E+02 0.0056 22.9 13.2 123 80-206 125-269 (275)
147 TIGR00512 salvage_mtnA S-methy 34.5 93 0.002 26.5 5.1 14 141-154 140-157 (331)
148 cd01449 TST_Repeat_2 Thiosulfa 34.5 60 0.0013 22.3 3.5 27 143-172 77-103 (118)
149 PHA03338 US22 family homolog; 34.4 41 0.00089 28.0 2.8 38 149-186 161-199 (344)
150 cd02071 MM_CoA_mut_B12_BD meth 34.0 29 0.00063 24.6 1.8 30 67-96 83-112 (122)
151 COG1228 HutI Imidazolonepropio 34.0 1.5E+02 0.0033 25.9 6.5 48 135-183 297-347 (406)
152 cd04445 DEP_PLEK1 DEP (Disheve 33.3 48 0.001 22.9 2.6 34 144-182 24-58 (99)
153 smart00450 RHOD Rhodanese Homo 32.5 75 0.0016 20.4 3.6 29 142-173 54-82 (100)
154 PF06838 Met_gamma_lyase: Meth 32.2 1.4E+02 0.0031 26.0 5.8 71 105-190 123-193 (403)
155 PLN02582 1-deoxy-D-xylulose-5- 32.2 77 0.0017 29.8 4.6 50 104-159 276-327 (677)
156 PF01904 DUF72: Protein of unk 31.4 2.7E+02 0.0058 22.1 9.9 76 78-153 134-213 (230)
157 PF04309 G3P_antiterm: Glycero 31.3 1.6E+02 0.0036 22.5 5.5 32 137-169 37-70 (175)
158 PRK13936 phosphoheptose isomer 31.2 1.5E+02 0.0033 22.8 5.6 35 128-165 27-61 (197)
159 PRK01269 tRNA s(4)U8 sulfurtra 31.2 73 0.0016 28.5 4.2 28 142-172 447-474 (482)
160 cd05565 PTS_IIB_lactose PTS_II 30.6 44 0.00095 23.0 2.1 18 146-165 2-19 (99)
161 TIGR01245 trpD anthranilate ph 30.5 1.4E+02 0.003 25.3 5.6 54 142-198 97-155 (330)
162 cd01720 Sm_D2 The eukaryotic S 30.3 67 0.0015 21.6 2.9 29 134-162 4-32 (87)
163 PF13344 Hydrolase_6: Haloacid 30.1 1.8E+02 0.0039 19.7 6.9 69 130-200 16-97 (101)
164 PRK02947 hypothetical protein; 29.6 1.1E+02 0.0024 24.6 4.6 34 127-163 23-56 (246)
165 smart00489 DEXDc3 DEAD-like he 29.2 1.9E+02 0.0041 23.9 6.1 35 132-166 15-49 (289)
166 smart00488 DEXDc2 DEAD-like he 29.2 1.9E+02 0.0041 23.9 6.1 35 132-166 15-49 (289)
167 cd07944 DRE_TIM_HOA_like 4-hyd 29.2 3.2E+02 0.0068 22.3 12.1 125 79-206 115-260 (266)
168 KOG0235 Phosphoglycerate mutas 29.0 1.7E+02 0.0037 23.3 5.4 47 128-180 136-186 (214)
169 PF13147 Amidohydro_4: Amidohy 28.7 2.8E+02 0.006 21.7 6.9 53 130-182 222-279 (304)
170 PHA02540 61 DNA primase; Provi 28.4 2.9E+02 0.0064 23.6 7.1 38 146-185 53-90 (337)
171 cd01317 DHOase_IIa Dihydroorot 27.8 3.8E+02 0.0083 22.8 7.9 35 62-96 15-55 (374)
172 PF06415 iPGM_N: BPG-independe 27.5 71 0.0015 25.6 3.1 46 119-167 37-84 (223)
173 COG0182 Predicted translation 27.4 43 0.00093 28.4 1.9 15 141-155 147-161 (346)
174 PRK14071 6-phosphofructokinase 27.3 2.8E+02 0.0062 23.8 6.9 105 79-184 100-223 (360)
175 cd03174 DRE_TIM_metallolyase D 27.2 3.2E+02 0.0069 21.7 11.8 119 79-200 121-261 (265)
176 KOG0870 DNA polymerase epsilon 27.2 1.3E+02 0.0029 22.8 4.3 71 136-208 19-101 (172)
177 COG1440 CelA Phosphotransferas 26.6 59 0.0013 22.6 2.1 16 145-160 2-17 (102)
178 TIGR02094 more_P_ylases alpha- 26.3 80 0.0017 29.2 3.6 36 145-183 161-199 (601)
179 PRK08334 translation initiatio 26.0 1.4E+02 0.0031 25.7 4.8 12 143-155 160-171 (356)
180 PLN02723 3-mercaptopyruvate su 26.0 69 0.0015 26.9 2.9 29 141-172 266-294 (320)
181 TIGR00236 wecB UDP-N-acetylglu 25.9 2.9E+02 0.0063 23.1 6.8 40 127-168 68-107 (365)
182 PF10673 DUF2487: Protein of u 25.8 1.7E+02 0.0037 21.6 4.6 21 80-100 78-98 (142)
183 TIGR01873 cas_CT1978 CRISPR-as 25.8 35 0.00077 23.0 0.9 19 58-76 18-36 (87)
184 cd04765 HTH_MlrA-like_sg2 Heli 25.6 2.2E+02 0.0048 19.3 5.7 39 167-205 54-92 (99)
185 PRK13352 thiamine biosynthesis 25.3 3.7E+02 0.008 23.8 7.1 70 132-201 144-245 (431)
186 PRK10499 PTS system N,N'-diace 25.2 1.4E+02 0.003 20.7 3.9 17 145-161 4-20 (106)
187 PRK10310 PTS system galactitol 25.2 61 0.0013 21.9 2.1 18 145-162 3-20 (94)
188 PRK12315 1-deoxy-D-xylulose-5- 25.1 1.1E+02 0.0024 28.1 4.3 46 105-158 202-247 (581)
189 COG3673 Uncharacterized conser 24.7 4.6E+02 0.0099 22.6 8.6 77 126-205 103-189 (423)
190 PRK05720 mtnA methylthioribose 24.6 1.5E+02 0.0034 25.3 4.8 17 141-157 144-160 (344)
191 cd01906 proteasome_protease_Hs 24.2 1.2E+02 0.0025 22.7 3.7 34 150-183 128-161 (182)
192 PF05763 DUF835: Protein of un 24.2 2.9E+02 0.0062 20.1 6.0 63 110-185 40-104 (136)
193 PRK11391 etp phosphotyrosine-p 24.2 74 0.0016 23.3 2.5 21 145-165 3-23 (144)
194 PF00580 UvrD-helicase: UvrD/R 24.0 88 0.0019 25.3 3.2 32 144-175 13-46 (315)
195 cd01524 RHOD_Pyr_redox Member 23.6 1.3E+02 0.0029 19.4 3.5 28 142-172 49-76 (90)
196 cd01535 4RHOD_Repeat_4 Member 23.5 2.4E+02 0.0052 20.5 5.2 24 143-168 48-71 (145)
197 PRK10126 tyrosine phosphatase; 23.5 70 0.0015 23.4 2.3 20 145-164 3-22 (147)
198 PRK11558 putative ssRNA endonu 23.5 42 0.00091 23.2 0.9 19 58-76 20-38 (97)
199 PF03102 NeuB: NeuB family; I 23.4 1E+02 0.0022 24.9 3.4 30 125-155 123-152 (241)
200 cd01701 PolY_Rev1 DNA polymera 23.3 51 0.0011 28.7 1.7 59 130-189 57-115 (404)
201 COG2099 CobK Precorrin-6x redu 23.3 52 0.0011 26.9 1.6 76 63-139 43-126 (257)
202 cd00133 PTS_IIB PTS_IIB: subun 23.2 80 0.0017 19.7 2.3 18 146-163 1-18 (84)
203 TIGR02571 ComEB ComE operon pr 23.0 71 0.0015 23.8 2.2 53 66-118 88-140 (151)
204 COG2230 Cfa Cyclopropane fatty 22.6 4.2E+02 0.0091 22.1 6.8 78 128-205 153-239 (283)
205 TIGR02482 PFKA_ATP 6-phosphofr 22.5 4.6E+02 0.01 21.9 9.2 105 80-184 85-207 (301)
206 PRK08762 molybdopterin biosynt 22.2 2E+02 0.0043 24.7 5.1 28 142-172 55-82 (376)
207 TIGR00274 N-acetylmuramic acid 22.2 2.9E+02 0.0063 22.9 5.9 46 127-175 40-88 (291)
208 PF01451 LMWPc: Low molecular 22.1 98 0.0021 22.1 2.8 18 147-164 1-18 (138)
209 KOG1529 Mercaptopyruvate sulfu 22.0 1.1E+02 0.0023 25.5 3.2 29 139-167 231-259 (286)
210 PRK10812 putative DNAse; Provi 22.0 1.6E+02 0.0036 23.9 4.4 28 129-156 109-136 (265)
211 PF12683 DUF3798: Protein of u 22.0 1.3E+02 0.0028 24.9 3.6 71 81-154 125-209 (275)
212 TIGR00604 rad3 DNA repair heli 22.0 2.9E+02 0.0062 26.0 6.5 40 129-168 14-53 (705)
213 COG2897 SseA Rhodanese-related 21.9 76 0.0016 26.4 2.3 20 141-160 231-250 (285)
214 PRK08057 cobalt-precorrin-6x r 21.8 1.1E+02 0.0024 24.9 3.2 65 75-140 179-246 (248)
215 TIGR02455 TreS_stutzeri trehal 21.7 2.6E+02 0.0057 26.3 5.8 117 19-156 35-160 (688)
216 PRK13107 preprotein translocas 21.6 1.3E+02 0.0028 29.3 4.1 51 104-154 400-459 (908)
217 cd05564 PTS_IIB_chitobiose_lic 21.5 78 0.0017 21.4 2.0 13 146-158 1-13 (96)
218 PLN02790 transketolase 21.4 1.3E+02 0.0029 28.1 4.1 47 105-158 195-242 (654)
219 cd07214 Pat17_isozyme_like Pat 21.4 1.3E+02 0.0029 25.6 3.9 41 148-189 43-88 (349)
220 TIGR00190 thiC thiamine biosyn 21.3 5.1E+02 0.011 22.9 7.2 112 83-201 87-242 (423)
221 COG0588 GpmA Phosphoglycerate 21.2 4.4E+02 0.0095 21.2 6.6 64 109-179 134-203 (230)
222 COG1099 Predicted metal-depend 21.2 42 0.0009 27.0 0.6 65 76-143 14-94 (254)
223 PRK12571 1-deoxy-D-xylulose-5- 21.1 1.2E+02 0.0027 28.2 3.8 49 103-158 239-287 (641)
224 cd00158 RHOD Rhodanese Homolog 21.0 1.6E+02 0.0035 18.4 3.5 24 142-167 48-71 (89)
225 TIGR03217 4OH_2_O_val_ald 4-hy 21.0 5.2E+02 0.011 21.9 8.3 80 78-160 119-204 (333)
226 PRK06371 translation initiatio 20.9 1.1E+02 0.0023 26.1 3.1 21 135-155 128-148 (329)
227 cd00308 enolase_like Enolase-s 20.7 2.5E+02 0.0055 22.0 5.1 27 130-156 182-208 (229)
228 COG1513 CynS Cyanate lyase [In 20.7 1.5E+02 0.0033 21.7 3.3 27 151-177 27-53 (151)
229 KOG1016 Predicted DNA helicase 20.7 1E+02 0.0023 29.7 3.1 53 127-189 416-468 (1387)
230 cd05007 SIS_Etherase N-acetylm 20.7 1.4E+02 0.003 24.3 3.7 44 127-173 32-78 (257)
231 TIGR03569 NeuB_NnaB N-acetylne 20.7 2E+02 0.0044 24.4 4.7 30 126-155 144-174 (329)
232 COG0394 Wzb Protein-tyrosine-p 20.6 78 0.0017 23.2 2.0 20 145-164 3-22 (139)
233 PRK15378 inositol phosphate ph 20.5 45 0.00098 29.8 0.8 19 146-164 458-476 (564)
234 COG0381 WecB UDP-N-acetylgluco 20.3 4.2E+02 0.0091 23.1 6.5 83 80-167 24-112 (383)
235 TIGR00173 menD 2-succinyl-5-en 20.2 3.5E+02 0.0077 23.6 6.4 75 79-163 7-81 (432)
236 COG5016 Pyruvate/oxaloacetate 20.2 6.2E+02 0.013 22.5 8.7 54 108-168 167-220 (472)
237 PF00931 NB-ARC: NB-ARC domain 20.1 1.8E+02 0.0039 23.3 4.3 37 129-165 4-40 (287)
238 PRK10318 hypothetical protein; 20.1 1.2E+02 0.0027 21.7 2.8 30 130-159 70-103 (121)
239 PRK13104 secA preprotein trans 20.1 1.4E+02 0.003 29.2 3.9 81 105-188 396-494 (896)
No 1
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=4e-42 Score=249.92 Aligned_cols=170 Identities=59% Similarity=1.040 Sum_probs=161.8
Q ss_pred hcceEEecchhhHHHHHhhhhccCCCcccccCcEEEecCCCC-CChhHHHhCCCcEEEEecCCCccCCCCccccccCcEE
Q 028512 35 AGARILFYPTLLYNVFRNKIQAEFRWWDEVDQFLLLGAVPFP-KDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDH 113 (208)
Q Consensus 35 ~~~~~l~~P~l~~~~~~~~~~~~~~~~~~I~~~l~lG~~~~~-~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~ 113 (208)
+++|++|||+|+||++++| .+.++|| +|++++.+|.+|.. .+.+.+++.|+..||.|++++|...+...|+..||++
T Consensus 1 ~~ar~~fyptllynvv~~k-~s~~~wy-~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~ 78 (183)
T KOG1719|consen 1 MGARVLFYPTLLYNVVREK-ASAFRWY-RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEF 78 (183)
T ss_pred CCceeeecHHHHHHHHHHH-Hhhhcee-eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhcccee
Confidence 4789999999999999999 8889999 99999999999987 4677888999999999999999888888999999999
Q ss_pred EEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHH
Q 028512 114 LVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPS 193 (208)
Q Consensus 114 ~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~ 193 (208)
+.+|+.|....|+.+.+.++++||++....|+.|||||++|.+||+|+++||||+..+|++++|++++|++||.+.+.++
T Consensus 79 L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~ 158 (183)
T KOG1719|consen 79 LVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPA 158 (183)
T ss_pred EEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028512 194 QWKVRNRFSYALL 206 (208)
Q Consensus 194 ~~~~L~~~~~~L~ 206 (208)
||+.|.+|++.+.
T Consensus 159 Qw~~l~ef~~~~~ 171 (183)
T KOG1719|consen 159 QWDVLKEFYKQIV 171 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=100.00 E-value=7.4e-35 Score=216.16 Aligned_cols=137 Identities=26% Similarity=0.398 Sum_probs=126.8
Q ss_pred cccccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHH
Q 028512 61 WDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSN 140 (208)
Q Consensus 61 ~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~ 140 (208)
+++|+|+||+|++|.+.+.+.|+++||++||||+.+.+. ....+++|+++|+.|....+..+.+..+++||+..
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~------~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~ 74 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPN------LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDA 74 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC------CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999986542 12578999999999965577888999999999999
Q ss_pred hhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH
Q 028512 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSY 203 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~ 203 (208)
..+|++|||||.+|+||||++++||||...|+++++|+++|+++||.+.||++|+++|..|++
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~ 137 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYER 137 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=1.7e-34 Score=212.94 Aligned_cols=147 Identities=24% Similarity=0.327 Sum_probs=135.3
Q ss_pred ccCCCcccccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHH
Q 028512 56 AEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVD 135 (208)
Q Consensus 56 ~~~~~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~ 135 (208)
+...-+++|+++||+++-..+.+...++++||++|||.+.+.+ ... -.+++|..+|+.|....++.++|+.+.+
T Consensus 12 ~~~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~p----n~~--l~~~qy~kv~~~D~p~~~l~~hfD~vAD 85 (198)
T KOG1718|consen 12 PSIGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVP----NTS--LPDIQYMKVPLEDTPQARLYDHFDPVAD 85 (198)
T ss_pred CCccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCC----Ccc--CCCceeEEEEcccCCcchhhhhhhHHHH
Confidence 3455678999999999888889999999999999999998743 222 2578999999999998999999999999
Q ss_pred HHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHhCC
Q 028512 136 FIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSYALLLK 208 (208)
Q Consensus 136 ~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~L~~k 208 (208)
.|+....+||++||||.+|+|||+++|+||||++.+|++.+|+.+++++||.+.||.+||+||..||++|+|+
T Consensus 86 ~I~~v~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 86 KIHSVIMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred HHHHHHhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=258.38 Aligned_cols=170 Identities=25% Similarity=0.393 Sum_probs=147.8
Q ss_pred HhhhcceEEecchhhH----HHHHhhhhccCCCcccccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCCcccc
Q 028512 32 LVGAGARILFYPTLLY----NVFRNKIQAEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYH 107 (208)
Q Consensus 32 ~~~~~~~~l~~P~l~~----~~~~~~~~~~~~~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~ 107 (208)
.++++++|+|+||+++ ++|.++. .+.+++++|.|+||+|+.+.+.+.+.|+++||++||||+.+.+.. +....
T Consensus 63 ~~~~~~~~l~~P~l~~~~~~~~~~r~~-~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~--~~~~~ 139 (547)
T PRK12361 63 TIPWYIRWVFIPFLLGTRLYNAWARKR-DSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGL--DWSLT 139 (547)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcc-cCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccc--ccccc
Confidence 4577899999999954 4444443 567999999999999999999999999999999999999765421 11222
Q ss_pred ccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHh-CCCCHHHHHHHHHHhCC
Q 028512 108 AHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEY-KHMAPAAALEYVRCRRP 186 (208)
Q Consensus 108 ~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~-~~~s~~~A~~~vr~~Rp 186 (208)
..+++|+++|+.|.. .|..++++++++||++..++|++|||||++|+|||+++++||||.. .++++++|+++||++||
T Consensus 140 ~~~i~yl~iPi~D~~-~p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp 218 (547)
T PRK12361 140 EEDIDYLNIPILDHS-VPTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRK 218 (547)
T ss_pred ccCceEEEeecCCCC-CCcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCC
Confidence 468999999999975 7788999999999999999999999999999999999999999966 58999999999999999
Q ss_pred CCcCCHHHHHHHHHHHHHH
Q 028512 187 RVLLAPSQWKVRNRFSYAL 205 (208)
Q Consensus 187 ~~~~~~~~~~~L~~~~~~L 205 (208)
.+.+|+.|+++|++|+++.
T Consensus 219 ~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 219 TARLNKRQLRALEKMLEQG 237 (547)
T ss_pred CCCCCHHHHHHHHHHHHcC
Confidence 9999999999999998753
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=100.00 E-value=9.4e-33 Score=204.72 Aligned_cols=138 Identities=27% Similarity=0.389 Sum_probs=127.0
Q ss_pred cccccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHH
Q 028512 61 WDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSN 140 (208)
Q Consensus 61 ~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~ 140 (208)
.++|.++||+|+++.+.+.+.|++.||++||||+++.+. ..+...|++|+++|+.|....+....+..++++|...
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC----cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999987653 3444689999999999987566778899999999999
Q ss_pred hhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHH
Q 028512 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFS 202 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~ 202 (208)
..+|++|||||.+|.|||++++++|||...++++++|+++||++||.+.++++|+.+|.+|+
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 98899999999999999999999999999999999999999999999999999999999985
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=100.00 E-value=1.4e-32 Score=202.60 Aligned_cols=133 Identities=35% Similarity=0.547 Sum_probs=122.8
Q ss_pred EEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcE
Q 028512 68 LLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTT 147 (208)
Q Consensus 68 l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~V 147 (208)
||+|+.+.+. ...|+++||++|||++.+.+.. ...+..+++|+++|+.|....+..+.+..+++||++...+|++|
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~V 76 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKV 76 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhccccee
Confidence 7999999999 9999999999999999875421 34556789999999999666888899999999999999999999
Q ss_pred EEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Q 028512 148 YVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSYA 204 (208)
Q Consensus 148 lVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~ 204 (208)
||||.+|+||||++++||||...+|++++|+++++++||.+.|++.|+++|.+|+++
T Consensus 77 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 77 LVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999975
No 7
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=3e-29 Score=206.90 Aligned_cols=145 Identities=28% Similarity=0.377 Sum_probs=132.5
Q ss_pred CcccccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHH
Q 028512 60 WWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHS 139 (208)
Q Consensus 60 ~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~ 139 (208)
-+..|.|++|+|+...+.+...|++.||++|+|+....+... .....+++|+++|+.|....++..+|+.+++||+.
T Consensus 74 ~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~---~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~ 150 (285)
T KOG1716|consen 74 PIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPR---FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEK 150 (285)
T ss_pred CceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccc---cccccCceEEeccccCCccccHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999997643211 12233899999999999888899999999999999
Q ss_pred HhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHhC
Q 028512 140 NSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSYALLL 207 (208)
Q Consensus 140 ~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~L~~ 207 (208)
+...|++|||||.+|+|||+++++||||+..+|++++|+++|+.+||.+.||.+|+.||.+|++.+..
T Consensus 151 a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~ 218 (285)
T KOG1716|consen 151 AREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSK 218 (285)
T ss_pred HHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998865
No 8
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=1.1e-29 Score=200.06 Aligned_cols=142 Identities=20% Similarity=0.235 Sum_probs=130.5
Q ss_pred CcccccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHH
Q 028512 60 WWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHS 139 (208)
Q Consensus 60 ~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~ 139 (208)
++-+|.|+||+|+..++.+.+.|+++||++|||+++..+ ..+-+...+.|..+|+.|+........|.+|+.||++
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlp----n~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIde 246 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLP----NNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDE 246 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCCCc----chhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHH
Confidence 456899999999999999999999999999999997532 2233345688999999999888888999999999999
Q ss_pred HhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHH
Q 028512 140 NSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSYAL 205 (208)
Q Consensus 140 ~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~L 205 (208)
++.++..|||||-+|++||+|+++||||+...+++.+|+++|+.++.++.||..|+-||..|++.|
T Consensus 247 Arsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertl 312 (343)
T KOG1717|consen 247 ARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTL 312 (343)
T ss_pred hhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999876
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.96 E-value=3.8e-28 Score=185.13 Aligned_cols=143 Identities=24% Similarity=0.334 Sum_probs=123.9
Q ss_pred CCcccccCcEEEecCCCCCCh----hHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHH
Q 028512 59 RWWDEVDQFLLLGAVPFPKDV----PRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAV 134 (208)
Q Consensus 59 ~~~~~I~~~l~lG~~~~~~~~----~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~ 134 (208)
+-.+-+...++.-..|..+.. +.|+++||++||+++++.. +.+.++..|++|+++|+.|.. +|+.+.+.+++
T Consensus 9 ~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~---~~~~~~~~gi~~~~~p~~D~~-~P~~~~i~~~~ 84 (166)
T PTZ00242 9 RQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTY---DAELLEKNGIEVHDWPFDDGA-PPPKAVIDNWL 84 (166)
T ss_pred cceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCC---CHHHHHHCCCEEEecCCCCCC-CCCHHHHHHHH
Confidence 344567788888888888544 8889999999999987532 445677789999999999965 88888899999
Q ss_pred HHHHHHhhC----CCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHh
Q 028512 135 DFIHSNSCA----GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSYALL 206 (208)
Q Consensus 135 ~~i~~~~~~----g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~L~ 206 (208)
+++++.+.. |++|+|||.+|+||||+++++|||...++++++|++++|++||+++ ++.|+++|.+|.+.++
T Consensus 85 ~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~ 159 (166)
T PTZ00242 85 RLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKK 159 (166)
T ss_pred HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhc
Confidence 999887754 8999999999999999999999999888999999999999999986 7999999999998765
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.96 E-value=1.3e-27 Score=188.53 Aligned_cols=135 Identities=20% Similarity=0.255 Sum_probs=118.9
Q ss_pred EEEecCCCCC----ChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC
Q 028512 68 LLLGAVPFPK----DVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA 143 (208)
Q Consensus 68 l~lG~~~~~~----~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~ 143 (208)
+.+-..|+.. .++.|++.||++||+++++. ++...++..||+++++|++|.. +|..+.+++++++++..+..
T Consensus 94 fLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~---Yd~~~~~~~GI~~~~lpipDg~-aPs~~~i~~~l~~i~~~l~~ 169 (241)
T PTZ00393 94 ILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERT---YNDGEITSAGINVHELIFPDGD-APTVDIVSNWLTIVNNVIKN 169 (241)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCC---CCHHHHHHcCCeEEEeecCCCC-CCCHHHHHHHHHHHHHHHhc
Confidence 5566667654 44888999999999998753 3556677899999999999975 88889999999999998888
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHhCC
Q 028512 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSYALLLK 208 (208)
Q Consensus 144 g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~L~~k 208 (208)
|++|+|||.+|+||||+++++|||. .|+++++|+++||++||+++ +..|+++|++|+++.++|
T Consensus 170 g~~VaVHC~AGlGRTGtl~AayLI~-~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~~~~k~ 232 (241)
T PTZ00393 170 NRAVAVHCVAGLGRAPVLASIVLIE-FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKKKKKKK 232 (241)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999997 79999999999999999996 899999999999987653
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.92 E-value=7.2e-24 Score=162.21 Aligned_cols=119 Identities=27% Similarity=0.439 Sum_probs=109.7
Q ss_pred hHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhH
Q 028512 80 PRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRST 159 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~ 159 (208)
..++.+++++++.|+... ++.+.+...||.++++|+.|.. .|..+.+.++++.++.+.+ |++|.|||++|.||||
T Consensus 88 ~~~~~~~v~s~vrln~~~---yd~~~f~~~Gi~h~~l~f~Dg~-tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG 162 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKRL---YDAKRFTDAGIDHHDLFFADGS-TPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTG 162 (225)
T ss_pred HHhhhcccceEEEcCCCC---CChHHhcccCceeeeeecCCCC-CCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchh
Confidence 456788999999998763 4667788899999999999976 8999999999999999988 9999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH
Q 028512 160 TIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSY 203 (208)
Q Consensus 160 ~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~ 203 (208)
++++||||+..|+|+.+|+.+||..||++++++.|...+.++..
T Consensus 163 ~liAc~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 163 TLIACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876
No 12
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.85 E-value=2.5e-21 Score=147.12 Aligned_cols=143 Identities=18% Similarity=0.223 Sum_probs=92.8
Q ss_pred CCcccccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCC---CCcHHHHHHHHH
Q 028512 59 RWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLF---APSFVDIRRAVD 135 (208)
Q Consensus 59 ~~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~---~~~~~~~~~~~~ 135 (208)
..|..|.++||.|++|.+.+...|+++|+++||+|+.+........++++.||+++++++..... ....+.+.++++
T Consensus 5 ~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~ 84 (164)
T PF03162_consen 5 LNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALE 84 (164)
T ss_dssp TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHH
T ss_pred ccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHH
Confidence 34679999999999999999999999999999999986442222335678999999999976532 235667888888
Q ss_pred HHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHH
Q 028512 136 FIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSYAL 205 (208)
Q Consensus 136 ~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~L 205 (208)
.|.+.. +.||||||..|.+|||++++||- +.+||+...|++..+.--.. ..+..-.++++.|...+
T Consensus 85 ~ild~~--n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~~-~~~~~~~~fIe~f~~~~ 150 (164)
T PF03162_consen 85 IILDPR--NYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAGP-KIRYLDEQFIELFDVEL 150 (164)
T ss_dssp HHH-GG--G-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHGG-G--HHHHHHHHT-----
T ss_pred HHhCCC--CCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcCC-CCcHHHHHHHHhcCcce
Confidence 776544 48999999999999999999999 68999999999999864332 44667777888777654
No 13
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.82 E-value=4.2e-20 Score=138.19 Aligned_cols=102 Identities=31% Similarity=0.510 Sum_probs=71.1
Q ss_pred CCChhHHHhCCCcEEEEecCCCcc---CCC--CccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEE
Q 028512 76 PKDVPRLKQLGVGGVITLNEPYET---LVP--SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVH 150 (208)
Q Consensus 76 ~~~~~~L~~~gI~~Vi~l~~~~e~---~~~--~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVH 150 (208)
..|++.|+..|++.||.+.+..|. ..+ .+.++..|+.++|+|+.|.. .|..+.+.+++..+...+++|++|+||
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~-aPd~~~~~~i~~eL~~~L~~g~~V~vH 139 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS-APDFAAAWQILEELAARLENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS----HHHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC-CCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 456789999999999999987765 122 34677899999999999987 666777777888889999999999999
Q ss_pred cCCCCChhHHHHHHHHHHhC-CCCHHHHH
Q 028512 151 CKAGRGRSTTIVLCYLVEYK-HMAPAAAL 178 (208)
Q Consensus 151 C~~G~~RS~~v~~ayL~~~~-~~s~~~A~ 178 (208)
|++|.||||++++|+|+... ++++++|+
T Consensus 140 C~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 140 CRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 99999999999999999764 47999986
No 14
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.81 E-value=9.1e-19 Score=135.42 Aligned_cols=99 Identities=30% Similarity=0.467 Sum_probs=85.0
Q ss_pred cccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 028512 105 LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEY-KHMAPAAALEYVRC 183 (208)
Q Consensus 105 ~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~-~~~s~~~A~~~vr~ 183 (208)
.....++.++++|+.|.. .|....+.+++++|+...++|++|+|||++|+|||||+++||||.+ +++..++|+..++.
T Consensus 67 ~~~~~~~~~~~~~~~D~~-~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~ 145 (180)
T COG2453 67 IEENDGIQVLHLPILDGT-VPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRR 145 (180)
T ss_pred eeccCCceeeeeeecCCC-CCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 445678999999999976 7778999999999999999999999999999999999999999998 45588888888888
Q ss_pred hCCCCcCCHHHHHHHHHHHHH
Q 028512 184 RRPRVLLAPSQWKVRNRFSYA 204 (208)
Q Consensus 184 ~Rp~~~~~~~~~~~L~~~~~~ 204 (208)
+||..+.+..|..+..++...
T Consensus 146 ~r~~~v~~~~q~~~~~e~~~~ 166 (180)
T COG2453 146 RRPGAVVTEIQHLFELEQELF 166 (180)
T ss_pred cCCcccccHHHHHHHHHHHHH
Confidence 888766677777766665543
No 15
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.81 E-value=5.8e-19 Score=126.15 Aligned_cols=130 Identities=25% Similarity=0.340 Sum_probs=105.0
Q ss_pred EEecCCCCCC----hhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC-
Q 028512 69 LLGAVPFPKD----VPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA- 143 (208)
Q Consensus 69 ~lG~~~~~~~----~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~- 143 (208)
.+..-|+... ++.|+++|+++||.+|++. ++....+..||+.+.+|.+|.. +|....++.....+.....+
T Consensus 20 LIThnPtnaTln~fieELkKygvttvVRVCe~T---Ydt~~lek~GI~Vldw~f~dg~-ppp~qvv~~w~~l~~~~f~e~ 95 (173)
T KOG2836|consen 20 LITHNPTNATLNKFIEELKKYGVTTVVRVCEPT---YDTTPLEKEGITVLDWPFDDGA-PPPNQVVDDWLSLVKTKFREE 95 (173)
T ss_pred EEecCCCchhHHHHHHHHHhcCCeEEEEecccc---cCCchhhhcCceEeecccccCC-CCchHHHHHHHHHHHHHHhhC
Confidence 3444455433 5788999999999999873 4556677899999999999964 66666666666655443333
Q ss_pred -CCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Q 028512 144 -GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSYA 204 (208)
Q Consensus 144 -g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~ 204 (208)
|..|.|||.+|.||++.+++..|+. .||.+++|++++|++|.+++ |..|+.+|++|.-+
T Consensus 96 p~~cvavhcvaglgrapvlvalalie-~gmkyedave~ir~krrga~-n~kql~~lekyrpk 155 (173)
T KOG2836|consen 96 PGCCVAVHCVAGLGRAPVLVALALIE-AGMKYEDAVEMIRQKRRGAI-NSKQLLYLEKYRPK 155 (173)
T ss_pred CCCeEEEEeecccCcchHHHHHHHHH-ccccHHHHHHHHHHHhhccc-cHHHHHHHHHhCcc
Confidence 6789999999999999999999995 69999999999999999877 99999999998654
No 16
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.76 E-value=1e-17 Score=123.64 Aligned_cols=120 Identities=15% Similarity=0.114 Sum_probs=95.2
Q ss_pred ccccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCCc------cccccCcEEEEEeCCCCCCCCcHHHHHHHHH
Q 028512 62 DEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSS------LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVD 135 (208)
Q Consensus 62 ~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~~------~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~ 135 (208)
.+|++.+|+++++++.++..|+++||++|||++...|....+. .....|++|+++|+... ....+.+..+.+
T Consensus 3 ~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (135)
T TIGR01244 3 RKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAG--DITPDDVETFRA 80 (135)
T ss_pred eEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 4899999999999999999999999999999998766422211 22357999999999764 335556666666
Q ss_pred HHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCC
Q 028512 136 FIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRV 188 (208)
Q Consensus 136 ~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~ 188 (208)
+++. ..+|||+||++|. ||+++.+.++.. .|++.+++++..+...-..
T Consensus 81 ~~~~---~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~ 128 (135)
T TIGR01244 81 AIGA---AEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDL 128 (135)
T ss_pred HHHh---CCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCc
Confidence 6653 3589999999999 999999877764 7999999999998765443
No 17
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.63 E-value=1e-15 Score=108.56 Aligned_cols=97 Identities=25% Similarity=0.354 Sum_probs=65.4
Q ss_pred ccccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCC-C-----CccccccCcEEEEEeCCCCCCCCcHHHHHHHHH
Q 028512 62 DEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLV-P-----SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVD 135 (208)
Q Consensus 62 ~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~-~-----~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~ 135 (208)
.+|++.+++++++++.++..|++.|+++|||++.+.|... + ....+..|+.|+++|+... .+..+.+..+.+
T Consensus 3 ~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~--~~~~~~v~~f~~ 80 (110)
T PF04273_consen 3 RQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG--AITEEDVEAFAD 80 (110)
T ss_dssp EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT--T--HHHHHHHHH
T ss_pred EecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC--CCCHHHHHHHHH
Confidence 4899999999999999999999999999999997765421 1 1345688999999999764 456677777776
Q ss_pred HHHHHhhCCCcEEEEcCCCCChhHHHHHH
Q 028512 136 FIHSNSCAGKTTYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 136 ~i~~~~~~g~~VlVHC~~G~~RS~~v~~a 164 (208)
.++. .++|||+||+.|. ||+++.++
T Consensus 81 ~l~~---~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 81 ALES---LPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHT---TTTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHh---CCCCEEEECCCCh-hHHHHHHH
Confidence 6665 3589999999996 88776654
No 18
>PLN02727 NAD kinase
Probab=99.56 E-value=1.3e-14 Score=132.28 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=86.9
Q ss_pred cEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCC-----CccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHh
Q 028512 67 FLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVP-----SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNS 141 (208)
Q Consensus 67 ~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~-----~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~ 141 (208)
.+|++++|++.+++.|.++||++|||++.+.+...+ ....+..|++|+++|+.+.. .|..+++.++.+++++.
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~-apt~EqVe~fa~~l~~s- 339 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRT-APSAEQVEKFASLVSDS- 339 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCC-CCCHHHHHHHHHHHHhh-
Confidence 479999999999999999999999999987763111 22345689999999998754 88889999999988553
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
.++|||+||+.|.+|+|++++||+.+.-+..
T Consensus 340 -lpkPVLvHCKSGarRAGamvA~yl~~~~~~~ 370 (986)
T PLN02727 340 -SKKPIYLHSKEGVWRTSAMVSRWKQYMTRSA 370 (986)
T ss_pred -cCCCEEEECCCCCchHHHHHHHHHHHHcccc
Confidence 3599999999999999999999999876654
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.56 E-value=7.2e-14 Score=97.83 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=70.5
Q ss_pred EEEEeCCCCCCCCcHHHHHHHHHHHHHHhh---CCCcEEEEcCCCCChhHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 028512 113 HLVIPTRDYLFAPSFVDIRRAVDFIHSNSC---AGKTTYVHCKAGRGRSTTIVLCYLVEYK------HMAPAAALEYVRC 183 (208)
Q Consensus 113 ~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~---~g~~VlVHC~~G~~RS~~v~~ayL~~~~------~~s~~~A~~~vr~ 183 (208)
|...+++|...+...+.+.++++.+..... .++||+|||.+|.||||+++++|++... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 344455565534444778888877777654 2689999999999999999999998652 2688999999999
Q ss_pred hCCCCcCCHHHHHHHHHH
Q 028512 184 RRPRVLLAPSQWKVRNRF 201 (208)
Q Consensus 184 ~Rp~~~~~~~~~~~L~~~ 201 (208)
.||+.+.+..|+.++...
T Consensus 85 ~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00012 85 QRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhCCcHHHHHHHHHH
Confidence 999999999999987654
No 20
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.56 E-value=7.2e-14 Score=97.83 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=70.5
Q ss_pred EEEEeCCCCCCCCcHHHHHHHHHHHHHHhh---CCCcEEEEcCCCCChhHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 028512 113 HLVIPTRDYLFAPSFVDIRRAVDFIHSNSC---AGKTTYVHCKAGRGRSTTIVLCYLVEYK------HMAPAAALEYVRC 183 (208)
Q Consensus 113 ~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~---~g~~VlVHC~~G~~RS~~v~~ayL~~~~------~~s~~~A~~~vr~ 183 (208)
|...+++|...+...+.+.++++.+..... .++||+|||.+|.||||+++++|++... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 344455565534444778888877777654 2689999999999999999999998652 2688999999999
Q ss_pred hCCCCcCCHHHHHHHHHH
Q 028512 184 RRPRVLLAPSQWKVRNRF 201 (208)
Q Consensus 184 ~Rp~~~~~~~~~~~L~~~ 201 (208)
.||+.+.+..|+.++...
T Consensus 85 ~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00404 85 QRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhCCcHHHHHHHHHH
Confidence 999999999999987654
No 21
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.50 E-value=2.9e-13 Score=105.98 Aligned_cols=138 Identities=19% Similarity=0.220 Sum_probs=102.2
Q ss_pred cccccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCC---CC----cHHHHHHH
Q 028512 61 WDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLF---AP----SFVDIRRA 133 (208)
Q Consensus 61 ~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~---~~----~~~~~~~~ 133 (208)
|+.+.++||.|++|.+.+..+|+.++.++||.|+.+......-.+++..+|+++++.+..... .| ..+.+..+
T Consensus 60 Fs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~ 139 (249)
T KOG1572|consen 60 FSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKA 139 (249)
T ss_pred ccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHH
Confidence 348888999999999999999999999999999988643333447889999999999965431 22 23456666
Q ss_pred HHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHH
Q 028512 134 VDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFS 202 (208)
Q Consensus 134 ~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~ 202 (208)
++++-. ..+.|+||||..|..|+|+++.|.- +.++|++...++..+..-... -..--++++..|.
T Consensus 140 l~~lld--~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~fa~sk-~r~~d~~Fie~fd 204 (249)
T KOG1572|consen 140 LKVLLD--KRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRFAGSK-GRRVDLRFIEMFD 204 (249)
T ss_pred HHHHhc--ccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHhccch-hHHHHHHHHHHhc
Confidence 666433 3468999999999999999999987 678999888877765543222 2233334444444
No 22
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.44 E-value=1.6e-12 Score=91.35 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=89.4
Q ss_pred ccccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCC------ccccccCcEEEEEeCCCCCCCCcHHHHHHHHH
Q 028512 62 DEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPS------SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVD 135 (208)
Q Consensus 62 ~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~------~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~ 135 (208)
.+|++.+.++++++..|+..++..|+++|||.++..|....+ ...+..|+.|.++|+... ..+.+.++.+.+
T Consensus 4 ~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~--~iT~~dV~~f~~ 81 (130)
T COG3453 4 RRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGG--GITEADVEAFQR 81 (130)
T ss_pred eecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCC--CCCHHHHHHHHH
Confidence 489999999999999999999999999999999876653322 234678999999999765 444556666555
Q ss_pred HHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 028512 136 FIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCR 184 (208)
Q Consensus 136 ~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~ 184 (208)
.+.+ .++|||.||+.| .||.++-..-. ...||+.++...+=+..
T Consensus 82 Al~e---aegPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 82 ALDE---AEGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred HHHH---hCCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 5554 369999999999 48866655444 46899999988775543
No 23
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.44 E-value=1e-12 Score=105.38 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=70.8
Q ss_pred cEEEEEe-CCCCCCCCcHHHHHHHHHHHHHHhh--CCCcEEEEcCCCCChhHHHHHHHHHHh-----CCCCHHHHHHHHH
Q 028512 111 IDHLVIP-TRDYLFAPSFVDIRRAVDFIHSNSC--AGKTTYVHCKAGRGRSTTIVLCYLVEY-----KHMAPAAALEYVR 182 (208)
Q Consensus 111 i~~~~~p-~~D~~~~~~~~~~~~~~~~i~~~~~--~g~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~s~~~A~~~vr 182 (208)
+.+++++ .+|...++....+.+++..++.... .++||+|||.+|.||||++++++++.. ..+++.+++..+|
T Consensus 130 V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR 209 (231)
T cd00047 130 VTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELR 209 (231)
T ss_pred EEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4455554 3555544455677777777766643 368999999999999999999987644 3579999999999
Q ss_pred HhCCCCcCCHHHHHHHHH
Q 028512 183 CRRPRVLLAPSQWKVRNR 200 (208)
Q Consensus 183 ~~Rp~~~~~~~~~~~L~~ 200 (208)
++||+++.+..|+.++..
T Consensus 210 ~~R~~~v~~~~Qy~f~~~ 227 (231)
T cd00047 210 SQRPGMVQTEEQYIFLYR 227 (231)
T ss_pred hccccccCCHHHHHHHHH
Confidence 999999999999999875
No 24
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.39 E-value=3.6e-12 Score=103.89 Aligned_cols=82 Identities=22% Similarity=0.267 Sum_probs=66.3
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhC-CCcEEEEcCCCCChhHHHHHHHHHHh-----CCCCHHHHHHHHHHhCCCCcCCH
Q 028512 119 RDYLFAPSFVDIRRAVDFIHSNSCA-GKTTYVHCKAGRGRSTTIVLCYLVEY-----KHMAPAAALEYVRCRRPRVLLAP 192 (208)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~i~~~~~~-g~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~s~~~A~~~vr~~Rp~~~~~~ 192 (208)
+|.+.+.....+.+++..++..... ++||+|||.+|.||||++++++++.. ..+++.+++..+|++||+++.+.
T Consensus 167 ~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~ 246 (258)
T smart00194 167 PDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTE 246 (258)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCH
Confidence 4555343556677777777665443 68999999999999999999987633 46799999999999999999999
Q ss_pred HHHHHHHH
Q 028512 193 SQWKVRNR 200 (208)
Q Consensus 193 ~~~~~L~~ 200 (208)
.|+.++..
T Consensus 247 ~Qy~f~~~ 254 (258)
T smart00194 247 EQYIFLYR 254 (258)
T ss_pred HHHHHHHH
Confidence 99999865
No 25
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.39 E-value=4.9e-12 Score=109.40 Aligned_cols=96 Identities=21% Similarity=0.248 Sum_probs=75.1
Q ss_pred cEEEEEeC-CCCCCCCcHHHHHHHHHHHHHHhhCC---------CcEEEEcCCCCChhHHHHHHHHHHhCC-CCHHHHHH
Q 028512 111 IDHLVIPT-RDYLFAPSFVDIRRAVDFIHSNSCAG---------KTTYVHCKAGRGRSTTIVLCYLVEYKH-MAPAAALE 179 (208)
Q Consensus 111 i~~~~~p~-~D~~~~~~~~~~~~~~~~i~~~~~~g---------~~VlVHC~~G~~RS~~v~~ayL~~~~~-~s~~~A~~ 179 (208)
+.++|+.- +|++.++..+.+..+++.++.....+ .+.+|||.+|+||||+++++++++..+ .++++.+.
T Consensus 423 V~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~ 502 (535)
T PRK15375 423 IPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRA 502 (535)
T ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHH
Confidence 44555554 77775666666777777776643221 223799999999999999999997655 49999999
Q ss_pred HHHHhCCC-CcCCHHHHHHHHHHHHHHh
Q 028512 180 YVRCRRPR-VLLAPSQWKVRNRFSYALL 206 (208)
Q Consensus 180 ~vr~~Rp~-~~~~~~~~~~L~~~~~~L~ 206 (208)
.+|..|++ ++.++.|+.+|.+.+.+|.
T Consensus 503 dlR~qRng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 503 DFRNSRNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred HHHhcCCccccccHHHHHHHHHHHHHHh
Confidence 99999998 9999999999999887764
No 26
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.38 E-value=1.4e-12 Score=99.47 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=60.1
Q ss_pred cEEEecCCCC---CChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCC---c----------HHHH
Q 028512 67 FLLLGAVPFP---KDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAP---S----------FVDI 130 (208)
Q Consensus 67 ~l~lG~~~~~---~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~---~----------~~~~ 130 (208)
.||.++.+.. .+.+.|+++||++||||+.+.|....+... ..|++++++|+.+..... . ...+
T Consensus 20 ~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~-~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (164)
T PF13350_consen 20 RLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPL-IDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGM 98 (164)
T ss_dssp SEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S-TTH----------HHHHHHHH
T ss_pred cEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCC-cCCceeeeecccccccccccccccccccccchhhHH
Confidence 4899997764 567789999999999999887752222222 349999999996543220 0 0000
Q ss_pred ------------HHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHH
Q 028512 131 ------------RRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALE 179 (208)
Q Consensus 131 ------------~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~ 179 (208)
..+.+++.......+|||+||++|++|||.+++..|. ..|++.++.++
T Consensus 99 ~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~-~lGV~~~~I~~ 158 (164)
T PF13350_consen 99 LEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLS-LLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHH-HTT--HHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHH-HcCCCHHHHHH
Confidence 1111222223334579999999999999999988776 67998887654
No 27
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=99.24 E-value=4.3e-11 Score=103.30 Aligned_cols=138 Identities=21% Similarity=0.226 Sum_probs=104.8
Q ss_pred ccccCcEEEecCCCCCChh-----------HHHh--CCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHH
Q 028512 62 DEVDQFLLLGAVPFPKDVP-----------RLKQ--LGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFV 128 (208)
Q Consensus 62 ~~I~~~l~lG~~~~~~~~~-----------~L~~--~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~ 128 (208)
+=|+++|...+.|...... .|.. .|=-.|.||+.+ ..++...+. -....+++.|.. +|..+
T Consensus 16 tYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~e--r~yd~~~f~---g~V~~~~~~Dh~-~P~L~ 89 (434)
T KOG2283|consen 16 TYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSE--RLYDPSRFH---GRVARFGFDDHN-PPPLE 89 (434)
T ss_pred eeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCcc--ccCCccccc---cceeecCCCCCC-CCcHH
Confidence 4588899999988764322 3322 233358888863 223332222 134568999976 88999
Q ss_pred HHHHHHHHHHHHhhC--CCcEEEEcCCCCChhHHHHHHHHHHhCCC-CHHHHHHHHHHhC---C--CCcCCHHHHHHHHH
Q 028512 129 DIRRAVDFIHSNSCA--GKTTYVHCKAGRGRSTTIVLCYLVEYKHM-APAAALEYVRCRR---P--RVLLAPSQWKVRNR 200 (208)
Q Consensus 129 ~~~~~~~~i~~~~~~--g~~VlVHC~~G~~RS~~v~~ayL~~~~~~-s~~~A~~~vr~~R---p--~~~~~~~~~~~L~~ 200 (208)
.+..+++-++.++.. ..-|.|||++|++|||++++|||+..... ++++|+.+.-.+| . .....+.|.+++..
T Consensus 90 ~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y 169 (434)
T KOG2283|consen 90 LLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGY 169 (434)
T ss_pred HHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHH
Confidence 999999999999877 45799999999999999999999987665 5999999999999 4 35668999999999
Q ss_pred HHHHH
Q 028512 201 FSYAL 205 (208)
Q Consensus 201 ~~~~L 205 (208)
|+.-|
T Consensus 170 ~~~~l 174 (434)
T KOG2283|consen 170 FSRVL 174 (434)
T ss_pred HHHHh
Confidence 99843
No 28
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.22 E-value=2e-10 Score=95.84 Aligned_cols=89 Identities=15% Similarity=0.091 Sum_probs=64.9
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhh------------CCCcEEEEcCCCCChhHHHHHHHHHHh-----CCCCHHHHHHHH
Q 028512 119 RDYLFAPSFVDIRRAVDFIHSNSC------------AGKTTYVHCKAGRGRSTTIVLCYLVEY-----KHMAPAAALEYV 181 (208)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~i~~~~~------------~g~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~s~~~A~~~v 181 (208)
+|.+.+.....+.+++..+++... ..+||+|||.+|+||||++++...+.. ...+..+++..+
T Consensus 192 pd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~l 271 (303)
T PHA02742 192 PHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDL 271 (303)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 566645555666666666654221 137999999999999999987665532 345899999999
Q ss_pred HHhCCCCcCCHHHHHHHH----HHHHHHhC
Q 028512 182 RCRRPRVLLAPSQWKVRN----RFSYALLL 207 (208)
Q Consensus 182 r~~Rp~~~~~~~~~~~L~----~~~~~L~~ 207 (208)
|++|++++.+..|+.++. +|-+.+..
T Consensus 272 R~qR~~~Vqt~~QY~F~y~~l~~y~~~~~~ 301 (303)
T PHA02742 272 RKQRHNCLSLPQQYIFCYFIVLIFAKLMAD 301 (303)
T ss_pred HhhcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988654 45454443
No 29
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.19 E-value=2.6e-10 Score=94.72 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=61.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHh---------hCCCcEEEEcCCCCChhHHHHHHHHHH-----hCCCCHHHHHHHHHHh
Q 028512 119 RDYLFAPSFVDIRRAVDFIHSNS---------CAGKTTYVHCKAGRGRSTTIVLCYLVE-----YKHMAPAAALEYVRCR 184 (208)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~i~~~~---------~~g~~VlVHC~~G~~RS~~v~~ayL~~-----~~~~s~~~A~~~vr~~ 184 (208)
+|.+.+.....|-+++..+++.. ...+||+|||.+|+||||++++...+. ...+++.+++..+|++
T Consensus 187 Pd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~q 266 (298)
T PHA02740 187 PADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQK 266 (298)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhh
Confidence 56664555555655555444321 124799999999999999998766543 3456999999999999
Q ss_pred CCCCcCCHHHHHHHHH
Q 028512 185 RPRVLLAPSQWKVRNR 200 (208)
Q Consensus 185 Rp~~~~~~~~~~~L~~ 200 (208)
|++++.+..|+.++.+
T Consensus 267 R~~~Vqt~~QY~F~y~ 282 (298)
T PHA02740 267 KYGCMNCLDDYVFCYH 282 (298)
T ss_pred CccccCCHHHHHHHHH
Confidence 9999999999988764
No 30
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.17 E-value=3.4e-10 Score=95.18 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=66.7
Q ss_pred cEEEEEeC-CCCCCCCcHHHHHHHHHHHHHHhh-------C----CCcEEEEcCCCCChhHHHHHHHHHH-----hCCCC
Q 028512 111 IDHLVIPT-RDYLFAPSFVDIRRAVDFIHSNSC-------A----GKTTYVHCKAGRGRSTTIVLCYLVE-----YKHMA 173 (208)
Q Consensus 111 i~~~~~p~-~D~~~~~~~~~~~~~~~~i~~~~~-------~----g~~VlVHC~~G~~RS~~v~~ayL~~-----~~~~s 173 (208)
+.++++.. +|.+.+.....+.+++..+++... . .+||+|||.+|+||||++++...+. ...++
T Consensus 202 V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vd 281 (323)
T PHA02746 202 IHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVC 281 (323)
T ss_pred EEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCC
Confidence 44444443 566645555666666666654321 1 2799999999999999999865442 24569
Q ss_pred HHHHHHHHHHhCCCCcCCHHHHHHHHHH
Q 028512 174 PAAALEYVRCRRPRVLLAPSQWKVRNRF 201 (208)
Q Consensus 174 ~~~A~~~vr~~Rp~~~~~~~~~~~L~~~ 201 (208)
+.+++..+|.+|++++.+..|+.++.+-
T Consensus 282 v~~~V~~lR~qR~~~Vqt~~QY~F~y~~ 309 (323)
T PHA02746 282 LGEIVLKIRKQRHSSVFLPEQYAFCYKA 309 (323)
T ss_pred HHHHHHHHHhcccccCCCHHHHHHHHHH
Confidence 9999999999999999999999987754
No 31
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.16 E-value=3.9e-10 Score=94.43 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=60.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhh-----------CCCcEEEEcCCCCChhHHHHHHHHHH-----hCCCCHHHHHHHHH
Q 028512 119 RDYLFAPSFVDIRRAVDFIHSNSC-----------AGKTTYVHCKAGRGRSTTIVLCYLVE-----YKHMAPAAALEYVR 182 (208)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~i~~~~~-----------~g~~VlVHC~~G~~RS~~v~~ayL~~-----~~~~s~~~A~~~vr 182 (208)
+|.+.+.....+.+++..++...+ ..+||+|||.+|+||||+++++..+. ....+..+++..+|
T Consensus 193 pd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR 272 (312)
T PHA02747 193 FEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIR 272 (312)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 565544445556565555544321 12699999999999999999876432 24569999999999
Q ss_pred HhCCCCcCCHHHHHHH
Q 028512 183 CRRPRVLLAPSQWKVR 198 (208)
Q Consensus 183 ~~Rp~~~~~~~~~~~L 198 (208)
.+|++++.+..|+.++
T Consensus 273 ~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 273 EQRHAGIMNFDDYLFI 288 (312)
T ss_pred hccccccCCHHHHHHH
Confidence 9999999999999988
No 32
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=99.11 E-value=8.1e-10 Score=81.10 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=81.7
Q ss_pred hHHHhCCCcEEEEecCCCcc-CCCCcccccc--CcEEEEEeCCCCC-CCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCC
Q 028512 80 PRLKQLGVGGVITLNEPYET-LVPSSLYHAH--GIDHLVIPTRDYL-FAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGR 155 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~e~-~~~~~~~~~~--gi~~~~~p~~D~~-~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~ 155 (208)
+.-.+.|-+++|++...... ..+.....+. .+.+-.+...|.+ ..|...++...++|++++-+. .++||||.+|+
T Consensus 26 e~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aGI 104 (172)
T COG5350 26 ETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAGI 104 (172)
T ss_pred HHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeecccc
Confidence 34456889999999886432 1221111111 1112222222322 467789999999999998665 89999999999
Q ss_pred ChhHHHHH-HHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHH
Q 028512 156 GRSTTIVL-CYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKV 197 (208)
Q Consensus 156 ~RS~~v~~-ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~ 197 (208)
|||.+++. +-|.....++..+..+.+|..+|.+.||+.....
T Consensus 105 SRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI 147 (172)
T COG5350 105 SRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAI 147 (172)
T ss_pred ccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHH
Confidence 99988664 3445567899999999999999999999876543
No 33
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.09 E-value=9.1e-10 Score=87.85 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=67.5
Q ss_pred EEEEEe-CCCCCCCCcHHHHHHHHHHHHHHh-hCCCcEEEEcCCCCChhHHHHHHHHHHh-----CCCCHHHHHHHHHHh
Q 028512 112 DHLVIP-TRDYLFAPSFVDIRRAVDFIHSNS-CAGKTTYVHCKAGRGRSTTIVLCYLVEY-----KHMAPAAALEYVRCR 184 (208)
Q Consensus 112 ~~~~~p-~~D~~~~~~~~~~~~~~~~i~~~~-~~g~~VlVHC~~G~~RS~~v~~ayL~~~-----~~~s~~~A~~~vr~~ 184 (208)
.++++. ..|...++....+..+++.+.... ..++||+|||.+|.||||+++++.++.. ...+..+++..+|++
T Consensus 136 ~~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~ 215 (235)
T PF00102_consen 136 THFHYTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQ 215 (235)
T ss_dssp EEEEEESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTT
T ss_pred cceeeeeccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhh
Confidence 344443 344442334555666666666655 3368999999999999999999887743 356999999999999
Q ss_pred CCCCcCCHHHHHHHHHH
Q 028512 185 RPRVLLAPSQWKVRNRF 201 (208)
Q Consensus 185 Rp~~~~~~~~~~~L~~~ 201 (208)
||+++.+..|+.++...
T Consensus 216 R~~~i~~~~qy~f~~~~ 232 (235)
T PF00102_consen 216 RPGAIQSPEQYRFCYMA 232 (235)
T ss_dssp STTSSSSHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHH
Confidence 99999999999998764
No 34
>PHA02738 hypothetical protein; Provisional
Probab=99.09 E-value=1.1e-09 Score=92.05 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=61.2
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhh--------------CCCcEEEEcCCCCChhHHHHHHHHHH-----hCCCCHHHHH
Q 028512 118 TRDYLFAPSFVDIRRAVDFIHSNSC--------------AGKTTYVHCKAGRGRSTTIVLCYLVE-----YKHMAPAAAL 178 (208)
Q Consensus 118 ~~D~~~~~~~~~~~~~~~~i~~~~~--------------~g~~VlVHC~~G~~RS~~v~~ayL~~-----~~~~s~~~A~ 178 (208)
.+|.+.+.....|.+++..+++... .++||+|||.+|+||||++++...+. ....++.+++
T Consensus 187 Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V 266 (320)
T PHA02738 187 WPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIV 266 (320)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHH
Confidence 3565545455566666555554221 13699999999999999988765432 2356999999
Q ss_pred HHHHHhCCCCcCCHHHHHHHHH
Q 028512 179 EYVRCRRPRVLLAPSQWKVRNR 200 (208)
Q Consensus 179 ~~vr~~Rp~~~~~~~~~~~L~~ 200 (208)
..+|++|++++.+..|+.++.+
T Consensus 267 ~~lR~qR~~~vqt~~QY~F~y~ 288 (320)
T PHA02738 267 SSIRNQRYYSLFIPFQYFFCYR 288 (320)
T ss_pred HHHHhhhhhccCCHHHHHHHHH
Confidence 9999999999999999987654
No 35
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=98.97 E-value=3.2e-09 Score=97.96 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=67.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhC-CCcEEEEcCCCCChhHHHHHH----HHHH-hCCCCHHHHHHHHHHhCCCCcCCH
Q 028512 119 RDYLFAPSFVDIRRAVDFIHSNSCA-GKTTYVHCKAGRGRSTTIVLC----YLVE-YKHMAPAAALEYVRCRRPRVLLAP 192 (208)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~i~~~~~~-g~~VlVHC~~G~~RS~~v~~a----yL~~-~~~~s~~~A~~~vr~~Rp~~~~~~ 192 (208)
+|++.+.....|.++++.|+..+.. +.||+|||.+|+||||+++++ +|+. ...+.+.+.+..+|.+|-.++++.
T Consensus 1037 PDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~ 1116 (1144)
T KOG0792|consen 1037 PDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTL 1116 (1144)
T ss_pred ccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccch
Confidence 5666566778888888888877776 679999999999999998754 3332 246689999999999999999999
Q ss_pred HHHHHHHH
Q 028512 193 SQWKVRNR 200 (208)
Q Consensus 193 ~~~~~L~~ 200 (208)
.|+.|+.+
T Consensus 1117 ~QYkFVye 1124 (1144)
T KOG0792|consen 1117 SQYKFVYE 1124 (1144)
T ss_pred HHhhHHHH
Confidence 99998764
No 36
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.96 E-value=1.4e-09 Score=81.55 Aligned_cols=64 Identities=33% Similarity=0.491 Sum_probs=49.2
Q ss_pred CccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHH
Q 028512 103 SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVE 168 (208)
Q Consensus 103 ~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~ 168 (208)
....+..|+.|+++|+.|.. .|..+.+++++.++... ..+..+.+||.+|.|||.++.++|.|.
T Consensus 85 ~~~~~~~g~~Y~Ripitd~~-~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 85 EELVEGNGLRYYRIPITDHQ-APDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHHHHHTT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeCCCcC-CCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34556789999999999985 99999999999999988 667899999999999999998888774
No 37
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=98.93 E-value=2.7e-09 Score=90.50 Aligned_cols=123 Identities=19% Similarity=0.186 Sum_probs=77.5
Q ss_pred ChhHHHhCCCcEEEEecCCCccCCC------Cccc----cccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHH---HhhCC
Q 028512 78 DVPRLKQLGVGGVITLNEPYETLVP------SSLY----HAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHS---NSCAG 144 (208)
Q Consensus 78 ~~~~L~~~gI~~Vi~l~~~~e~~~~------~~~~----~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~---~~~~g 144 (208)
+...++.+|+-.|-|+.+.....+. +... ...-++|+....+|++.+...-.+..+++-++. .+..-
T Consensus 372 ee~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~A 451 (600)
T KOG0790|consen 372 EEGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDA 451 (600)
T ss_pred cccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhcccccc
Confidence 4456778888888887654221111 0011 112234555555676644333334444443432 22234
Q ss_pred CcEEEEcCCCCChhHHHHHHH-HH---HhC----CCCHHHHHHHHHHhCCCCcCCHHHHHHHHH
Q 028512 145 KTTYVHCKAGRGRSTTIVLCY-LV---EYK----HMAPAAALEYVRCRRPRVLLAPSQWKVRNR 200 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~~ay-L~---~~~----~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~ 200 (208)
+||.|||.||+||||+++..- || +.. .++....+++||++|.+++.++.|++++..
T Consensus 452 gpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~ 515 (600)
T KOG0790|consen 452 GPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYV 515 (600)
T ss_pred CcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHH
Confidence 799999999999999976432 33 223 457899999999999999999999998763
No 38
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.90 E-value=5.8e-09 Score=84.65 Aligned_cols=126 Identities=17% Similarity=0.123 Sum_probs=78.0
Q ss_pred cccCcEEEecCCCCCChh--HHHhCCCcEEEEecCCCcc---CCCCcc---ccccCcEEEEEeCCCCCCCCcHHHHHHHH
Q 028512 63 EVDQFLLLGAVPFPKDVP--RLKQLGVGGVITLNEPYET---LVPSSL---YHAHGIDHLVIPTRDYLFAPSFVDIRRAV 134 (208)
Q Consensus 63 ~I~~~l~lG~~~~~~~~~--~L~~~gI~~Vi~l~~~~e~---~~~~~~---~~~~gi~~~~~p~~D~~~~~~~~~~~~~~ 134 (208)
.+....|.++.|.+.+.. .....+++.++++..+.+. ...... ....++....++..... ....+.+...+
T Consensus 50 i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ 128 (249)
T COG2365 50 IIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTR-EDAAERLVELL 128 (249)
T ss_pred ccceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccc-hhhHHHHHHHH
Confidence 344457889999887766 6677899999999862111 111111 11122222223322211 22233333333
Q ss_pred HHHHHHhhC-CCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCH
Q 028512 135 DFIHSNSCA-GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAP 192 (208)
Q Consensus 135 ~~i~~~~~~-g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~ 192 (208)
.. .+.. ++|||+||.+|.+|||.++++|+....+.....+-+++...+++.....
T Consensus 129 ~l---~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 129 QL---LADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HH---HhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 33 3333 4999999999999999999999998766666677888877777665554
No 39
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.90 E-value=3.8e-09 Score=84.31 Aligned_cols=92 Identities=25% Similarity=0.315 Sum_probs=64.3
Q ss_pred cEEEEEeC-CCCCCCCcHHHHHHHHHHHHHHh---hCCCcEEEEcCCCCChhHHHHHHHHHHhCCC-C------------
Q 028512 111 IDHLVIPT-RDYLFAPSFVDIRRAVDFIHSNS---CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM-A------------ 173 (208)
Q Consensus 111 i~~~~~p~-~D~~~~~~~~~~~~~~~~i~~~~---~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~-s------------ 173 (208)
|.++.++. .|.. .| .+....++++... .+++|++|||.||+|||||+++.--+...-- +
T Consensus 185 Ihhf~y~nW~D~~-~p---~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D 260 (302)
T COG5599 185 IHHFQYINWVDFN-VP---DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQD 260 (302)
T ss_pred EEEEEecCccccC-Cc---CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhh
Confidence 44455554 5554 44 3444555554443 2468999999999999999987765543211 1
Q ss_pred -HHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHh
Q 028512 174 -PAAALEYVRCRRPRVLLAPSQWKVRNRFSYALL 206 (208)
Q Consensus 174 -~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~L~ 206 (208)
..+.+..+|++|-.++.|..|..+|.+-..+|.
T Consensus 261 ~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 261 LIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345678889999999999999999988776664
No 40
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.75 E-value=1.5e-08 Score=85.88 Aligned_cols=142 Identities=16% Similarity=0.158 Sum_probs=104.0
Q ss_pred cccCcEEEec-CCCCC-ChhHHHh--CCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHH
Q 028512 63 EVDQFLLLGA-VPFPK-DVPRLKQ--LGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIH 138 (208)
Q Consensus 63 ~I~~~l~lG~-~~~~~-~~~~L~~--~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~ 138 (208)
.-.+.++-|+ .-... -+..|+. ..+.-+||++...- .++.+..+..|+.|+.+.....+..|.......++..++
T Consensus 36 ~~~~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDltnt~r-yy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~ 114 (393)
T KOG2386|consen 36 SYSTKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLTNTLR-YYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVK 114 (393)
T ss_pred CCCcCCCCCccccCHHHHHHHHHhcCceEEEEEeccceee-eeccccccccceeEEEeccCCcccCCCccchHHHHHHHH
Confidence 3344455555 33333 3445554 45677999986533 235566778999999998877665665555555444444
Q ss_pred H----HhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHH
Q 028512 139 S----NSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSYAL 205 (208)
Q Consensus 139 ~----~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~L 205 (208)
. ....++=|+|||..|.+|+|-++++|||...+++..+|++.+...||..+..+.....|...+...
T Consensus 115 ~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~ 185 (393)
T KOG2386|consen 115 GFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDI 185 (393)
T ss_pred HHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhccccc
Confidence 3 444578899999999999999999999999999999999999999999998898888888776543
No 41
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=98.68 E-value=1.8e-07 Score=77.92 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=66.7
Q ss_pred EEeCCCCCCCCcHHHHHHHHHHHHHHhhC-CCcEEEEcCCCCChhHHHHHHHHHHhC-----CCCHHHHHHHHHHhCCCC
Q 028512 115 VIPTRDYLFAPSFVDIRRAVDFIHSNSCA-GKTTYVHCKAGRGRSTTIVLCYLVEYK-----HMAPAAALEYVRCRRPRV 188 (208)
Q Consensus 115 ~~p~~D~~~~~~~~~~~~~~~~i~~~~~~-g~~VlVHC~~G~~RS~~v~~ayL~~~~-----~~s~~~A~~~vr~~Rp~~ 188 (208)
....+|++.+.....+.+++..+...... .++++|||.+|+|||||+.+.--+..+ -.+.-..+..+|..|+.+
T Consensus 257 y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~m 336 (374)
T KOG0791|consen 257 YTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLM 336 (374)
T ss_pred EeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccc
Confidence 33446666443344556666666655554 579999999999999999887654331 346777888999999999
Q ss_pred cCCHHHHHHHHHHHHHH
Q 028512 189 LLAPSQWKVRNRFSYAL 205 (208)
Q Consensus 189 ~~~~~~~~~L~~~~~~L 205 (208)
++|..|+-+|.+--...
T Consensus 337 Vqte~Qyvfl~~c~~~~ 353 (374)
T KOG0791|consen 337 VQTEDQYVFLHQCVLES 353 (374)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 99999999998765544
No 42
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.45 E-value=6.7e-06 Score=71.82 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=98.9
Q ss_pred cccCcEEEecCCCCCCh----hHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCC--CCcHHHHHHHHHH
Q 028512 63 EVDQFLLLGAVPFPKDV----PRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLF--APSFVDIRRAVDF 136 (208)
Q Consensus 63 ~I~~~l~lG~~~~~~~~----~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~--~~~~~~~~~~~~~ 136 (208)
.++.+||+|.....-.. ..-....+..||+|.+..... .-......++++|+..... ..+...+.+++.|
T Consensus 291 ~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~----~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~f 366 (451)
T PF04179_consen 291 PGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPK----ESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSF 366 (451)
T ss_pred cCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccc----cccCCCceEEeCcCCCCcccHHHHHHHHHHHHHH
Confidence 34679999998762211 111235788999998754311 1113456788999866432 2345778899999
Q ss_pred HHHHhhC--CCcEEEEcCCCCChhHHHHHHHHHHhCCCC----------------HHHHHHHHHHhCCCCcCCHHHHHHH
Q 028512 137 IHSNSCA--GKTTYVHCKAGRGRSTTIVLCYLVEYKHMA----------------PAAALEYVRCRRPRVLLAPSQWKVR 198 (208)
Q Consensus 137 i~~~~~~--g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s----------------~~~A~~~vr~~Rp~~~~~~~~~~~L 198 (208)
+...+.. +++|+|+|..|.+.|..+++|.|+.+.+.. ...-+.+|-+.+|.+.|+.+.++.+
T Consensus 367 v~~~L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsV 446 (451)
T PF04179_consen 367 VRSHLSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSV 446 (451)
T ss_pred HHHHhcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9998887 899999999999999999999999875331 2334677778899999999999999
Q ss_pred HHH
Q 028512 199 NRF 201 (208)
Q Consensus 199 ~~~ 201 (208)
..|
T Consensus 447 NsF 449 (451)
T PF04179_consen 447 NSF 449 (451)
T ss_pred HHh
Confidence 877
No 43
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.44 E-value=1.6e-06 Score=75.16 Aligned_cols=60 Identities=27% Similarity=0.350 Sum_probs=47.1
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHHh---C---CCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHH
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLCYLVEY---K---HMAPAAALEYVRCRRPRVLLAPSQWKVRNRFS 202 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~ayL~~~---~---~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~ 202 (208)
..+|+.|||.+|.||||++++...+.. . ..+..+.+..+|.+|++++.+..|+.++..-.
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~ 363 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIYAAT 363 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence 358999999999999999996542211 2 23588888899999999999999987776443
No 44
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.27 E-value=2.5e-06 Score=76.29 Aligned_cols=87 Identities=23% Similarity=0.245 Sum_probs=62.3
Q ss_pred EEEeCCCCCCCCcHHHHHHHHHHHHHHhhC-CCcEEEEcCCCCChhHHHHHHHHHHh---C---CCCHHHHHHHHHHhCC
Q 028512 114 LVIPTRDYLFAPSFVDIRRAVDFIHSNSCA-GKTTYVHCKAGRGRSTTIVLCYLVEY---K---HMAPAAALEYVRCRRP 186 (208)
Q Consensus 114 ~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~-g~~VlVHC~~G~~RS~~v~~ayL~~~---~---~~s~~~A~~~vr~~Rp 186 (208)
+.+.+.+.+.+.+...+.++-.-++++..- ..+|+|||..|-||||+.++.-++.. . ..+....++++|.+||
T Consensus 896 HfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~ 975 (1004)
T KOG0793|consen 896 HFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRP 975 (1004)
T ss_pred eeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCC
Confidence 334445555455555666666666666542 56999999999999999765443321 2 3477888999999999
Q ss_pred CCcCCHHHHHHHHH
Q 028512 187 RVLLAPSQWKVRNR 200 (208)
Q Consensus 187 ~~~~~~~~~~~L~~ 200 (208)
+++-+..|.++...
T Consensus 976 GmVaTkdQFef~l~ 989 (1004)
T KOG0793|consen 976 GMVATKDQFEFALT 989 (1004)
T ss_pred cceeehhhhHHHHH
Confidence 99999999887653
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.04 E-value=1.3e-05 Score=75.29 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=56.5
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHhhC----CCcEEEEcCCCCChhHHHHH-----HHHHHhCCCCHHHHHHHHHHhCCCC
Q 028512 118 TRDYLFAPSFVDIRRAVDFIHSNSCA----GKTTYVHCKAGRGRSTTIVL-----CYLVEYKHMAPAAALEYVRCRRPRV 188 (208)
Q Consensus 118 ~~D~~~~~~~~~~~~~~~~i~~~~~~----g~~VlVHC~~G~~RS~~v~~-----ayL~~~~~~s~~~A~~~vr~~Rp~~ 188 (208)
.+|++.+.. --..+.|+++...- .||++|||.+|.||||++++ -.+......+.-.-+..+|.+|+..
T Consensus 703 Wpd~gvPe~---~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~m 779 (1087)
T KOG4228|consen 703 WPDHGVPET---PTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNM 779 (1087)
T ss_pred CCCCCCccc---chHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccc
Confidence 356553322 23444555544332 39999999999999999653 2233334558888999999999999
Q ss_pred cCCHHHHHHHHH
Q 028512 189 LLAPSQWKVRNR 200 (208)
Q Consensus 189 ~~~~~~~~~L~~ 200 (208)
+.+..|+-++.+
T Consensus 780 VQt~eQYiFi~~ 791 (1087)
T KOG4228|consen 780 VQTEEQYIFIHE 791 (1087)
T ss_pred cccHHHHHHHHH
Confidence 999999988764
No 46
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.93 E-value=3e-05 Score=72.85 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=51.6
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHH----HhCC-CCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHH
Q 028512 144 GKTTYVHCKAGRGRSTTIVLCYLV----EYKH-MAPAAALEYVRCRRPRVLLAPSQWKVRNRFSYAL 205 (208)
Q Consensus 144 g~~VlVHC~~G~~RS~~v~~ayL~----~~~~-~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~L 205 (208)
.+|+.|||..|.||||+++++-++ +..| ++.-++++.+|..||+++.+.+|++++.+--.+.
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYdv~~~y 1084 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYDVALEY 1084 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHHHHHHHHh
Confidence 589999999999999998876544 2334 4899999999999999999999999987655443
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=97.20 E-value=0.0013 Score=48.56 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=44.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhC---CCcEEEEcCCCCCh----hHHHHHHHHHHhCCCCHHHHHHHHHHhCCC
Q 028512 119 RDYLFAPSFVDIRRAVDFIHSNSCA---GKTTYVHCKAGRGR----STTIVLCYLVEYKHMAPAAALEYVRCRRPR 187 (208)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~i~~~~~~---g~~VlVHC~~G~~R----S~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~ 187 (208)
.|.+ +....++-+.+..+++.++. .++.+|||...-.+ ++.++++|+|...|||+++|++-+.+.-|.
T Consensus 39 ~DFG-PlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p~ 113 (141)
T PF14671_consen 39 ADFG-PLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQPP 113 (141)
T ss_dssp S-------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT--
T ss_pred CcCC-CccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCCC
Confidence 5766 66778888888888888776 57788888866543 466889999999999999999999877543
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=0.014 Score=52.21 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHH
Q 028512 131 RRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 131 ~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~a 164 (208)
..++...++....+.+|||||..|-+||+-+++.
T Consensus 361 aga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsL 394 (717)
T KOG4471|consen 361 AGAVRIADKVESESRSVLVHCSDGWDRTAQLVSL 394 (717)
T ss_pred HHHHHHHHHHhcCCceEEEEcCCCccchHHHHHH
Confidence 3344545555556789999999999999987753
No 49
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=93.73 E-value=0.16 Score=43.48 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=18.6
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHH
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCY 165 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ay 165 (208)
..|..|||||..|.+||+.++...
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ 252 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLA 252 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHH
Confidence 568899999999999998877543
No 50
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=93.11 E-value=0.66 Score=31.70 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=19.8
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
..+++|+|+|..| .||...+ .+|. ..|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a~-~~L~-~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKAS-AYLK-ERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHHH-HHHH-HhCCc
Confidence 4568999999998 5887543 3444 45653
No 51
>PLN02160 thiosulfate sulfurtransferase
Probab=93.06 E-value=0.18 Score=37.04 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=20.0
Q ss_pred hhCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+..+++|++||..| .||...+.. |. ..|.
T Consensus 78 ~~~~~~IivyC~sG-~RS~~Aa~~-L~-~~G~ 106 (136)
T PLN02160 78 LNPADDILVGCQSG-ARSLKATTE-LV-AAGY 106 (136)
T ss_pred cCCCCcEEEECCCc-HHHHHHHHH-HH-HcCC
Confidence 34578999999999 588766433 33 4465
No 52
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=92.23 E-value=0.27 Score=44.28 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=25.0
Q ss_pred HHHHHHHHHhh-CCCcEEEEcCCCCChhHHHHHH
Q 028512 132 RAVDFIHSNSC-AGKTTYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 132 ~~~~~i~~~~~-~g~~VlVHC~~G~~RS~~v~~a 164 (208)
++..++.+++. +|-+|||||..|.+||..|+..
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SL 364 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVSSL 364 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHHHH
Confidence 34455556666 4689999999999999988753
No 53
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=91.61 E-value=0.53 Score=32.35 Aligned_cols=70 Identities=19% Similarity=0.091 Sum_probs=39.3
Q ss_pred HhCCCcEEEEecCCCccCCCCccccccCcE-EEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHH
Q 028512 83 KQLGVGGVITLNEPYETLVPSSLYHAHGID-HLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTI 161 (208)
Q Consensus 83 ~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~-~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v 161 (208)
...+-..+|+++++.+... .+-.. ..++|+.+.... ..... ...+++++|+|+.|. ||...
T Consensus 16 ~~~~~~~liDvR~~~e~~~------~~i~~~~~~ip~~~~~~~--~~~~~---------~~~~~~ivv~C~~G~-rS~~a 77 (110)
T COG0607 16 LAGEDAVLLDVREPEEYER------GHIPGAAINIPLSELKAA--ENLLE---------LPDDDPIVVYCASGV-RSAAA 77 (110)
T ss_pred hccCCCEEEeccChhHhhh------cCCCcceeeeecccchhh--hcccc---------cCCCCeEEEEeCCCC-ChHHH
Confidence 3445668999998744211 01122 567777654211 00000 456799999999995 78544
Q ss_pred HHHHHHHhCCC
Q 028512 162 VLCYLVEYKHM 172 (208)
Q Consensus 162 ~~ayL~~~~~~ 172 (208)
+ .+|.. .|.
T Consensus 78 a-~~L~~-~G~ 86 (110)
T COG0607 78 A-AALKL-AGF 86 (110)
T ss_pred H-HHHHH-cCC
Confidence 4 44553 454
No 54
>PRK01415 hypothetical protein; Validated
Probab=90.49 E-value=0.68 Score=37.60 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=20.2
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
..+++|+++|+.|+ ||.. ++.+|. ..|.+
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~k-Aa~~L~-~~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCEK-STSLLK-SIGYD 197 (247)
T ss_pred cCCCeEEEECCCCh-HHHH-HHHHHH-HcCCC
Confidence 45789999999995 8754 445565 45653
No 55
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=89.96 E-value=1.5 Score=31.00 Aligned_cols=30 Identities=20% Similarity=0.081 Sum_probs=20.5
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
..+.+|+|+|..| +++++.++..|. ..|.+
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~~l~-~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWWTLR-YFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHHHHH-HcCCC
Confidence 4468999999998 556666555554 45654
No 56
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=84.33 E-value=2 Score=36.11 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHHhCCCC
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
.+++|+|+|..|. ||.. ++.+|.. .|.+
T Consensus 170 kdk~IvvyC~~G~-Rs~~-aa~~L~~-~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEK-ASAWMKH-EGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HHHH-HHHHHHH-cCCC
Confidence 4689999999995 8854 4556654 5653
No 57
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=83.33 E-value=3.6 Score=34.23 Aligned_cols=91 Identities=21% Similarity=0.214 Sum_probs=54.6
Q ss_pred ccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC
Q 028512 64 VDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA 143 (208)
Q Consensus 64 I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~ 143 (208)
|+|.-.+|..-.+.+...+-.-.=+-|||.+..+|.. +..-.....|....|.++-.++.+..+.
T Consensus 105 v~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~---------------iG~F~gAv~p~~~tFrefP~~v~~~~~~ 169 (308)
T COG1054 105 VDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVA---------------IGHFEGAVEPDIETFREFPAWVEENLDL 169 (308)
T ss_pred cCccccccCccCHHHHHHHhcCCCeEEEEcCcceeEe---------------eeeecCccCCChhhhhhhHHHHHHHHHh
Confidence 5565566666666666555443336777777665521 1111122355567788888888766553
Q ss_pred --CCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 144 --GKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 144 --g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+++|...|++|+ |-=- +.+||. ..|+
T Consensus 170 ~~~KkVvmyCTGGI-RCEK-as~~m~-~~GF 197 (308)
T COG1054 170 LKDKKVVMYCTGGI-RCEK-ASAWMK-ENGF 197 (308)
T ss_pred ccCCcEEEEcCCce-eehh-hHHHHH-Hhcc
Confidence 789999999998 5432 334444 4454
No 58
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=82.63 E-value=4.1 Score=28.13 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=18.2
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
.+.+|+|+|..|. ||.. ++..|. ..|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L~-~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSLI-NAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHHH-HCCC
Confidence 3579999999996 7744 344443 4565
No 59
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=81.65 E-value=4.7 Score=27.43 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=43.4
Q ss_pred CCCcEEEEecCCCccCCCCccccccCc-EEEEEeCCCC---CCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHH
Q 028512 85 LGVGGVITLNEPYETLVPSSLYHAHGI-DHLVIPTRDY---LFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTT 160 (208)
Q Consensus 85 ~gI~~Vi~l~~~~e~~~~~~~~~~~gi-~~~~~p~~D~---~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~ 160 (208)
.+=..|||++...+. ....| .-+++|.... ........+.............+.+|+++|..|. |+..
T Consensus 11 ~~~~~liD~R~~~~~-------~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~ 82 (113)
T PF00581_consen 11 NESVLLIDVRSPEEY-------ERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGS 82 (113)
T ss_dssp TTTEEEEEESSHHHH-------HHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHH
T ss_pred CCCeEEEEeCCHHHH-------HcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccch
Confidence 345579999865432 11111 1356666321 2233445555555555555566788999997775 5655
Q ss_pred HHHH---HHHHhCCCC
Q 028512 161 IVLC---YLVEYKHMA 173 (208)
Q Consensus 161 v~~a---yL~~~~~~s 173 (208)
.+.+ +.+...|.+
T Consensus 83 ~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 83 AAAARVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHcCCC
Confidence 5544 334444553
No 60
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=80.89 E-value=1.9 Score=29.28 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=19.2
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
..+++|+|+|..|. ||..++. .|. ..|.+
T Consensus 59 ~~~~~ivv~C~~G~-rs~~aa~-~L~-~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQFVAE-LLA-ERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHHHHH-HHH-HcCce
Confidence 45689999999994 7755443 343 45653
No 61
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=76.26 E-value=6.4 Score=29.68 Aligned_cols=29 Identities=10% Similarity=-0.172 Sum_probs=20.1
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+.+|++.|..|..||... +++++..|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~a--a~~L~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNA--AKRALAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHHH--HHHHHhcCC
Confidence 35689999999987777763 344444554
No 62
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=75.22 E-value=6.3 Score=27.74 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=18.8
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+.+|+|+|..| .||..++. .|. ..|.
T Consensus 62 ~~~~~ivv~C~~G-~rs~~aa~-~L~-~~G~ 89 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIAAAE-AAA-QAGF 89 (117)
T ss_pred CCCCeEEEEcCCC-ccHHHHHH-HHH-HCCC
Confidence 4568999999998 47776543 333 4454
No 63
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=74.19 E-value=9.5 Score=27.25 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=20.3
Q ss_pred hhCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+..+.+|+|.|..|-.||..++ +++...|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHHcCC
Confidence 4457899999975435776544 56666665
No 64
>PRK05569 flavodoxin; Provisional
Probab=73.60 E-value=31 Score=24.80 Aligned_cols=92 Identities=7% Similarity=-0.086 Sum_probs=53.7
Q ss_pred ccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCC-hhHHHHHHHHHHhCCCCHHHHHHHHHHhCC
Q 028512 108 AHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRG-RSTTIVLCYLVEYKHMAPAAALEYVRCRRP 186 (208)
Q Consensus 108 ~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~-RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp 186 (208)
....-.+-.|+......+ ...+..+++.+.....+|+++.+-+..|.+ ..+.-.+.-.+...|++.-.. ..-
T Consensus 48 ~~d~iilgsPty~~~~~~-~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~------~~~ 120 (141)
T PRK05569 48 EADAVAFGSPSMDNNNIE-QEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGD------LAV 120 (141)
T ss_pred hCCEEEEECCCcCCCcCC-hHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeee------EEE
Confidence 345556677776543222 234556555554433458999999998865 233222333444556654332 111
Q ss_pred CCcCCHHHHHHHHHHHHHHh
Q 028512 187 RVLLAPSQWKVRNRFSYALL 206 (208)
Q Consensus 187 ~~~~~~~~~~~L~~~~~~L~ 206 (208)
...|+...++.+.+|-++|.
T Consensus 121 ~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 121 NESPNKEELNSAKELGKKLA 140 (141)
T ss_pred ccCCCHHHHHHHHHHHHHHh
Confidence 23478899999999988774
No 65
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=73.19 E-value=15 Score=26.03 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=26.9
Q ss_pred hHHHhCCCcEEEEecCCCccCC---C----CccccccCcEEEEEeC
Q 028512 80 PRLKQLGVGGVITLNEPYETLV---P----SSLYHAHGIDHLVIPT 118 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~e~~~---~----~~~~~~~gi~~~~~p~ 118 (208)
..|+..||+.|||+..-..... . .......||.|.++|-
T Consensus 7 ~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~ 52 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPE 52 (122)
T ss_pred HHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechh
Confidence 4678899999999875432111 1 1234567999999996
No 66
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=73.09 E-value=4.4 Score=24.70 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHh
Q 028512 160 TIVLCYLVEYKHMAPAAALEYVRCR 184 (208)
Q Consensus 160 ~v~~ayL~~~~~~s~~~A~~~vr~~ 184 (208)
--+...||...|+|.++|+..++..
T Consensus 16 ~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 16 EQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 3456789998999999999999854
No 67
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=71.80 E-value=9.3 Score=25.83 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=18.7
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHHhCCCC
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
.+.+|+++|..| .||... +.+|.. .|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~~-~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLLR-QGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHHH-cCCc
Confidence 468999999998 577554 334443 5653
No 68
>PRK05320 rhodanese superfamily protein; Provisional
Probab=69.50 E-value=11 Score=30.88 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=19.7
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHHhCCCC
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
.+++|+++|..|. ||..+ +.+|. ..|.+
T Consensus 174 kdk~IvvyC~~G~-Rs~~A-a~~L~-~~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEKA-AIHMQ-EVGID 201 (257)
T ss_pred CCCeEEEECCCCH-HHHHH-HHHHH-HcCCc
Confidence 4689999999995 77654 45565 34653
No 69
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=69.21 E-value=20 Score=30.61 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCCChhHHHH
Q 028512 143 AGKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~ 162 (208)
.+.+|+|+|..|-.||+.++
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa 106 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ 106 (345)
T ss_pred CCCeEEEEECCCChHHHHHH
Confidence 56899999975546888765
No 70
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=68.34 E-value=8 Score=33.35 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=17.4
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 145 KTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
.+|+|||..|. ||... +.+|. ..|.
T Consensus 333 ~~Ivv~C~sG~-RS~~A-a~~L~-~~G~ 357 (370)
T PRK05600 333 DNVVVYCASGI-RSADF-IEKYS-HLGH 357 (370)
T ss_pred CcEEEECCCCh-hHHHH-HHHHH-HcCC
Confidence 38999999994 87654 44554 3455
No 71
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=68.00 E-value=11 Score=31.25 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=15.6
Q ss_pred cEEEEcCCCCChhHHHH
Q 028512 146 TTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v~ 162 (208)
.|-|=|++|..||.+++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 58899999999999887
No 72
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=67.62 E-value=11 Score=30.98 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.4
Q ss_pred cEEEEcCCCCChhHHHH
Q 028512 146 TTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v~ 162 (208)
.|.|=|.+|..||.+++
T Consensus 245 TIaIGCTGGqHRSV~ia 261 (286)
T COG1660 245 TIAIGCTGGQHRSVYIA 261 (286)
T ss_pred EEEEccCCCccchHHHH
Confidence 48899999999999887
No 73
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=66.46 E-value=2.9 Score=28.83 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=9.0
Q ss_pred CcEEEEcCCC
Q 028512 145 KTTYVHCKAG 154 (208)
Q Consensus 145 ~~VlVHC~~G 154 (208)
.+|||||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 6899999987
No 74
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=65.52 E-value=14 Score=27.02 Aligned_cols=73 Identities=19% Similarity=0.084 Sum_probs=37.2
Q ss_pred hHHHhCCCcEEEEecCCCccCCCCccccccC-cEEEEEeCCCCCC--CCcHHHHHHHHHHHHHHhhC-CCcEEEEcCCCC
Q 028512 80 PRLKQLGVGGVITLNEPYETLVPSSLYHAHG-IDHLVIPTRDYLF--APSFVDIRRAVDFIHSNSCA-GKTTYVHCKAGR 155 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~g-i~~~~~p~~D~~~--~~~~~~~~~~~~~i~~~~~~-g~~VlVHC~~G~ 155 (208)
..|-+.+=...||++++.|.. .-+ -.-+++|..-... .-....|.+-+.+ .... ...+.|+|+.|.
T Consensus 31 k~L~~~~~~~llDVRepeEfk-------~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~---~kp~~d~eiIf~C~SG~ 100 (136)
T KOG1530|consen 31 KNLLQHPDVVLLDVREPEEFK-------QGHIPASINIPYMSRPGAGALKNPEFLKQVGS---SKPPHDKEIIFGCASGV 100 (136)
T ss_pred HHHhcCCCEEEEeecCHHHhh-------ccCCcceEeccccccccccccCCHHHHHHhcc---cCCCCCCcEEEEeccCc
Confidence 344445556788888765531 111 1345666522110 1112233333332 2222 358999999996
Q ss_pred ChhHHHHH
Q 028512 156 GRSTTIVL 163 (208)
Q Consensus 156 ~RS~~v~~ 163 (208)
||....-
T Consensus 101 -Rs~~A~~ 107 (136)
T KOG1530|consen 101 -RSLKATK 107 (136)
T ss_pred -chhHHHH
Confidence 8865543
No 75
>PRK09875 putative hydrolase; Provisional
Probab=65.43 E-value=43 Score=27.90 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.3
Q ss_pred ChhHHHhCCCcEEEEecCC
Q 028512 78 DVPRLKQLGVGGVITLNEP 96 (208)
Q Consensus 78 ~~~~L~~~gI~~Vi~l~~~ 96 (208)
.+..+++.|.++||+++..
T Consensus 39 el~~~~~~Gg~tiVd~T~~ 57 (292)
T PRK09875 39 EMNDLMTRGVRNVIEMTNR 57 (292)
T ss_pred HHHHHHHhCCCeEEecCCC
Confidence 4567788999999999854
No 76
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=64.93 E-value=12 Score=24.89 Aligned_cols=28 Identities=11% Similarity=-0.096 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 144 g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+.+|+|+|..|...++..++..|. ..|.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~-~~G~ 77 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLS-ELGY 77 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHH-HcCc
Confidence 679999999985433445544444 4454
No 77
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=64.27 E-value=23 Score=29.78 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 144 g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+..|+|+|..|-.||..++. +| ...|+
T Consensus 74 ~~~vvvyC~~gG~RS~~aa~-~L-~~~G~ 100 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSLAW-LL-AQIGF 100 (311)
T ss_pred CCcEEEEECCCChHHHHHHH-HH-HHcCC
Confidence 34599999654468876653 33 34454
No 78
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=64.24 E-value=9.1 Score=31.34 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=21.7
Q ss_pred CCCCChhHHHHHHHHHHhCCCCHHHHHHH
Q 028512 152 KAGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (208)
Q Consensus 152 ~~G~~RS~~v~~ayL~~~~~~s~~~A~~~ 180 (208)
--|+||||+.+.+-++ .|++.++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 4699999998888776 59998888554
No 79
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=63.52 E-value=15 Score=30.55 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.8
Q ss_pred cEEEEcCCCCChhHHHHH
Q 028512 146 TTYVHCKAGRGRSTTIVL 163 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v~~ 163 (208)
.|-|=|++|..||.+++=
T Consensus 247 ~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 247 TIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred EEEEecCCCcccHHHHHH
Confidence 488999999999998873
No 80
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=63.14 E-value=9.5 Score=25.48 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 144 g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+.+|+++|..|. ||... +.+| ...|.
T Consensus 56 ~~~iv~~c~~G~-rs~~a-a~~L-~~~G~ 81 (95)
T cd01534 56 GARIVLADDDGV-RADMT-ASWL-AQMGW 81 (95)
T ss_pred CCeEEEECCCCC-hHHHH-HHHH-HHcCC
Confidence 578999999985 77543 3444 44565
No 81
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=63.05 E-value=22 Score=27.75 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHH
Q 028512 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLV 167 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~ 167 (208)
.+.+.++++.+.+.+.++++|++. |.|+|++++..+-+
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 366888999999999999999985 88899887765544
No 82
>smart00400 ZnF_CHCC zinc finger.
Probab=61.87 E-value=11 Score=22.75 Aligned_cols=32 Identities=19% Similarity=0.580 Sum_probs=22.9
Q ss_pred EEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHH
Q 028512 148 YVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYV 181 (208)
Q Consensus 148 lVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~v 181 (208)
..||.+ -|+.|-+ +-++|+..|++..+|++.+
T Consensus 23 ~~~Cf~-cg~gGd~-i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGNV-ISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCCH-HHHHHHHHCcCHHHHHHHh
Confidence 478875 3556655 4456667899999999875
No 83
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=61.72 E-value=13 Score=25.09 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 144 g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+.+|+|+|..|. ||..++. .| ...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~-~L-~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA-FL-VKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH-HH-HHcCC
Confidence 578999999986 7755443 33 34454
No 84
>PRK13938 phosphoheptose isomerase; Provisional
Probab=61.01 E-value=28 Score=27.15 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHh
Q 028512 125 PSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEY 169 (208)
Q Consensus 125 ~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~ 169 (208)
...+.+.++.+.+.+.+.+|++|++. |.|+|+.++...-.+.
T Consensus 26 ~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~L 67 (196)
T PRK13938 26 VLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAEL 67 (196)
T ss_pred hhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHHc
Confidence 44567888888888889999999985 8888988886665544
No 85
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=60.47 E-value=7.4 Score=26.58 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCChhHHHH
Q 028512 145 KTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~ 162 (208)
.+||+-|.+|.+ |+.++
T Consensus 4 ~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV 20 (95)
T ss_pred cEEEEECCCchh-HHHHH
Confidence 689999999998 65544
No 86
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=60.13 E-value=5.1 Score=32.58 Aligned_cols=81 Identities=14% Similarity=0.179 Sum_probs=51.3
Q ss_pred cEEEecC-CCCCChhHHHhCCCcEEEEecCCCccCCC---CccccccCcEEEEEeCCCCCC-----CCcHHHHHHHHHHH
Q 028512 67 FLLLGAV-PFPKDVPRLKQLGVGGVITLNEPYETLVP---SSLYHAHGIDHLVIPTRDYLF-----APSFVDIRRAVDFI 137 (208)
Q Consensus 67 ~l~lG~~-~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~---~~~~~~~gi~~~~~p~~D~~~-----~~~~~~~~~~~~~i 137 (208)
.+..|++ ....-.+.+++++|+.|||.+-++-.... ...++..||.|+++-=+.... --..+.++++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 5789998 44455567788999999999977543111 234567899998886543321 11235567777666
Q ss_pred HHHhhCCCcEEE
Q 028512 138 HSNSCAGKTTYV 149 (208)
Q Consensus 138 ~~~~~~g~~VlV 149 (208)
.+. .+++||+
T Consensus 126 ~~~--~~~~ifl 135 (249)
T PF02571_consen 126 KEL--GGGRIFL 135 (249)
T ss_pred hhc--CCCCEEE
Confidence 432 2366666
No 87
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=59.81 E-value=11 Score=31.19 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=20.5
Q ss_pred CCCChhHHHHHHHHHHhCCCCHHHHHHH
Q 028512 153 AGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (208)
Q Consensus 153 ~G~~RS~~v~~ayL~~~~~~s~~~A~~~ 180 (208)
-|.||||+-..+-++ .|++.++|.++
T Consensus 166 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLL--LGLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999998877666 49998887543
No 88
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=59.60 E-value=6.2 Score=32.07 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=49.0
Q ss_pred cEEEecCCC-CCChhHHHhCCCcEEEEecCCCccCCC---CccccccCcEEEEEeCCCCCC-----CCcHHHHHHHHHHH
Q 028512 67 FLLLGAVPF-PKDVPRLKQLGVGGVITLNEPYETLVP---SSLYHAHGIDHLVIPTRDYLF-----APSFVDIRRAVDFI 137 (208)
Q Consensus 67 ~l~lG~~~~-~~~~~~L~~~gI~~Vi~l~~~~e~~~~---~~~~~~~gi~~~~~p~~D~~~-----~~~~~~~~~~~~~i 137 (208)
.+..|++.. ..-...+++++|+.|||.+-++-.... .+.++..|+.|+++-=+.... --..+.++++++.+
T Consensus 45 ~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 45 PVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred eEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHh
Confidence 577888844 445567788999999999977543211 235567889998886432210 11234566777666
Q ss_pred HHHhhCCCcEEE
Q 028512 138 HSNSCAGKTTYV 149 (208)
Q Consensus 138 ~~~~~~g~~VlV 149 (208)
.+. ++||.
T Consensus 125 ~~~----~~vll 132 (248)
T PRK08057 125 APF----RRVLL 132 (248)
T ss_pred hcc----CCEEE
Confidence 443 45555
No 89
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=59.58 E-value=11 Score=26.49 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=18.8
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+++|+|+|..|. ||...+- +|. ..|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa~-~L~-~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAVR-KLK-ELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHHH-HHH-HcCC
Confidence 44689999999995 8764443 333 4565
No 90
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=59.05 E-value=12 Score=30.64 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=20.4
Q ss_pred CCCChhHHHHHHHHHHhCCCCHHHHHHH
Q 028512 153 AGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (208)
Q Consensus 153 ~G~~RS~~v~~ayL~~~~~~s~~~A~~~ 180 (208)
-|+||||+-..+-|+ .|++.++|.++
T Consensus 160 PGiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 599999998877666 58888887543
No 91
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=58.28 E-value=13 Score=30.69 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=20.6
Q ss_pred CCCChhHHHHHHHHHHhCCCCHHHHHHH
Q 028512 153 AGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (208)
Q Consensus 153 ~G~~RS~~v~~ayL~~~~~~s~~~A~~~ 180 (208)
-|+||||+-..+-+. .|++.++|.++
T Consensus 164 PGiSRSG~TI~~~l~--~G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLL--LGLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHHH
Confidence 599999998877666 59998887543
No 92
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=58.27 E-value=20 Score=27.39 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHH
Q 028512 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTT 160 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~ 160 (208)
.+.+.++.+.|-+.+.+|++|+++ |.|+|++
T Consensus 24 ~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNKVLAC---GNGGSAA 54 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEE---CCCcchh
Confidence 467788888888899999999885 6666765
No 93
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=58.18 E-value=22 Score=24.58 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=17.2
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
.+.+|+++|..| .||...+. .|. ..|.
T Consensus 59 ~~~~IVlyC~~G-~rS~~aa~-~L~-~~G~ 85 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQAKE-ILS-EMGY 85 (104)
T ss_pred CCCeEEEEeCCC-hHHHHHHH-HHH-HcCC
Confidence 356899999998 46655543 343 3454
No 94
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=58.08 E-value=14 Score=24.41 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=17.7
Q ss_pred hhCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
...+.+|+|+|..|. ||..+ +.+|. ..|.
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~a-~~~l~-~~G~ 81 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQL-AQALR-EAGF 81 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHHH-HHHHH-HcCC
Confidence 345789999999774 55443 33333 4454
No 95
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=57.80 E-value=27 Score=24.08 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCCChhHHHHHH
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~a 164 (208)
.+.+|+|||..+-.||...+..
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~ 82 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARK 82 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHH
Confidence 3579999998544677766543
No 96
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=57.41 E-value=13 Score=24.90 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=18.1
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+.+|+|+|..| .||.. ++ ..+...|.
T Consensus 59 ~~~~~ivv~c~~g-~~s~~-~~-~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASG-WRSAL-AG-KTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCC-CcHHH-HH-HHHHHcCh
Confidence 4568999999988 47643 33 34444554
No 97
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=57.10 E-value=29 Score=27.33 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHh
Q 028512 128 VDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEY 169 (208)
Q Consensus 128 ~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~ 169 (208)
+.|.++++.|.++ .++|+|- |+||||.++=++-|..
T Consensus 26 ~~~~~a~~~i~~~---~gkv~V~---G~GkSG~Igkk~Aa~L 61 (202)
T COG0794 26 EDFVRAVELILEC---KGKVFVT---GVGKSGLIGKKFAARL 61 (202)
T ss_pred HHHHHHHHHHHhc---CCcEEEE---cCChhHHHHHHHHHHH
Confidence 4566666666554 4788874 9999999986665543
No 98
>PRK15043 transcriptional regulator MirA; Provisional
Probab=56.96 E-value=26 Score=28.43 Aligned_cols=61 Identities=10% Similarity=-0.012 Sum_probs=44.0
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCC------------CCcCCHHHHHHHHHHHHH
Q 028512 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRP------------RVLLAPSQWKVRNRFSYA 204 (208)
Q Consensus 144 g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp------------~~~~~~~~~~~L~~~~~~ 204 (208)
|+++|+-|..|-+++.+...|++....|+..+--=.-+.+-|| +..+++.|.++|..|...
T Consensus 162 ~~~~Ll~~~~~~~~~~lwl~a~~l~~~g~~v~vl~~~~~~~~pelf~~~~~~~~~~~~~t~~q~~~~~~w~~~ 234 (243)
T PRK15043 162 GKDALVVGWNIHDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQ 234 (243)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHhcCCceEEEeCCcccccChhhcCCCeEEEEeCCCCCHHHHHHHHHHHHh
Confidence 6789999999999999999999998887742211111123333 345689999999999864
No 99
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=56.90 E-value=15 Score=24.61 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=16.1
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHH
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLV 167 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~ 167 (208)
..+++|+++|..|. ||.. ++..|.
T Consensus 52 ~~~~~iv~~c~~g~-~s~~-~~~~L~ 75 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQ-NAERLA 75 (99)
T ss_pred CCCCcEEEEeCCCc-hHHH-HHHHHH
Confidence 45689999999984 5554 333444
No 100
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=56.81 E-value=13 Score=26.36 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=16.9
Q ss_pred hCCCcEEEEcC-CCCChhHHHHHHHHHH
Q 028512 142 CAGKTTYVHCK-AGRGRSTTIVLCYLVE 168 (208)
Q Consensus 142 ~~g~~VlVHC~-~G~~RS~~v~~ayL~~ 168 (208)
..+.+|+|||. .| .||+.++. +|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~aa~-~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPRMAR-HLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHHHHH-HHHH
Confidence 45689999997 66 57766444 4543
No 101
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=56.62 E-value=13 Score=25.18 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=17.9
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
.+.+|+|+|..|. ||..+ + .++...|.
T Consensus 65 ~~~~ivv~c~~g~-~s~~~-~-~~l~~~G~ 91 (106)
T cd01519 65 KDKELIFYCKAGV-RSKAA-A-ELARSLGY 91 (106)
T ss_pred CCCeEEEECCCcH-HHHHH-H-HHHHHcCC
Confidence 4679999999985 66443 3 33445565
No 102
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=56.53 E-value=13 Score=24.83 Aligned_cols=28 Identities=7% Similarity=-0.107 Sum_probs=18.6
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+.+|+|+|..| +||+.+ +.+|. ..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~-~~~l~-~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFA-AQELL-ALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHH-HHHHH-HcCC
Confidence 4568999999877 577554 44454 4564
No 103
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=56.46 E-value=23 Score=25.82 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCC
Q 028512 130 IRRAVDFIHSNSCAGKTTYVHCKAG 154 (208)
Q Consensus 130 ~~~~~~~i~~~~~~g~~VlVHC~~G 154 (208)
..-++..+++...+|++|+|+|..-
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~ 39 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDE 39 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSH
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 5677888999999999999999653
No 104
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=56.39 E-value=14 Score=27.44 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhCCCcEEEEcCC
Q 028512 132 RAVDFIHSNSCAGKTTYVHCKA 153 (208)
Q Consensus 132 ~~~~~i~~~~~~g~~VlVHC~~ 153 (208)
-++.++.+....|.+|+|+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 7888999999999999999964
No 105
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=56.33 E-value=16 Score=29.99 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=28.0
Q ss_pred ccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcC
Q 028512 104 SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCK 152 (208)
Q Consensus 104 ~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~ 152 (208)
..|+..|+.|+ -|+..++ +++.++.++...+..+||+||..
T Consensus 229 ~lFe~LG~~Y~-GPiDGHd-------l~~Li~~l~~~K~~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYI-GPIDGHD-------LEELIEVLENAKDIDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEE-EEEETT--------HHHHHHHHHHHCCSSSEEEEEEE
T ss_pred HHHHHcCCeEE-eccCCCC-------HHHHHHHHHHHhcCCCCEEEEEe
Confidence 67888999998 4655543 55566666666666899999963
No 106
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=54.53 E-value=36 Score=23.48 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCChhHHHH
Q 028512 144 GKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 144 g~~VlVHC~~G~~RS~~v~ 162 (208)
..+|++||..|-.||...+
T Consensus 66 ~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCEEEEECCCCCcccHHHH
Confidence 4689999998656776544
No 107
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=53.42 E-value=23 Score=26.10 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEcCCC
Q 028512 128 VDIRRAVDFIHSNSCAGKTTYVHCKAG 154 (208)
Q Consensus 128 ~~~~~~~~~i~~~~~~g~~VlVHC~~G 154 (208)
....-++..+.+...+|.+|+|+|..-
T Consensus 13 ~~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 13 ALEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 356678888999999999999999654
No 108
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=53.25 E-value=20 Score=33.13 Aligned_cols=47 Identities=9% Similarity=0.323 Sum_probs=28.7
Q ss_pred ccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChh
Q 028512 104 SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRS 158 (208)
Q Consensus 104 ~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS 158 (208)
..|++.|++|.. |++.++ .+.+.++++ .....++|++|||..=+|+-
T Consensus 232 ~~f~~~G~~~~~-~vDGhd----~~~l~~al~---~ak~~~~P~~i~~~T~KGkG 278 (617)
T TIGR00204 232 TFFEELGFNYIG-PVDGHD----LLELIETLK---NAKKLKGPVFLHIQTKKGKG 278 (617)
T ss_pred chHHHcCCcEEc-ccCCCC----HHHHHHHHH---HHhcCCCCEEEEEEecCCCC
Confidence 347788998887 764432 334444443 33344679999998554443
No 109
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=52.72 E-value=21 Score=32.81 Aligned_cols=48 Identities=13% Similarity=0.296 Sum_probs=32.7
Q ss_pred CCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCCh
Q 028512 102 PSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGR 157 (208)
Q Consensus 102 ~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~R 157 (208)
+...|++.|++|+ -|++.++ +++.+..+.+..+..+||+||...=+|+
T Consensus 235 ~~~lFeelGf~Yi-GPiDGHn-------i~~Li~~Lk~~kd~~gPvllHv~T~KGK 282 (627)
T COG1154 235 PGTLFEELGFNYI-GPIDGHN-------LEELIPTLKNAKDLKGPVLLHVVTKKGK 282 (627)
T ss_pred chhhHHHhCCeeE-CCcCCCC-------HHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 3457888899997 4555443 5555666666666789999999754443
No 110
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=52.02 E-value=16 Score=24.19 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=12.5
Q ss_pred CcEEEEcCCCCChhHH
Q 028512 145 KTTYVHCKAGRGRSTT 160 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~ 160 (208)
++|++.|.+|+|=|.+
T Consensus 1 ~kilvvCg~G~gtS~m 16 (87)
T cd05567 1 KKIVFACDAGMGSSAM 16 (87)
T ss_pred CEEEEECCCCccHHHH
Confidence 4699999999985443
No 111
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=51.72 E-value=18 Score=24.91 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
.+.+|+|+|..|. ||...+ ..|. ..|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~aa-~~L~-~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMAK-DILL-DMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHHH-HHHH-HcCC
Confidence 3578999999994 776554 3344 3454
No 112
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=51.46 E-value=39 Score=26.13 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHH
Q 028512 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVL 163 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ 163 (208)
.+.+.++++.|.+.+.+|++|++. |.|.|+.++.
T Consensus 27 ~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A~ 60 (192)
T PRK00414 27 IHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDAM 60 (192)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHH
Confidence 478999999999999999999875 6667776543
No 113
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=50.17 E-value=9.3 Score=31.19 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=49.2
Q ss_pred cEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCC---CccccccCcEEEEEeCCC---CCCCCcHHHHHHHHHHHHHH
Q 028512 67 FLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVP---SSLYHAHGIDHLVIPTRD---YLFAPSFVDIRRAVDFIHSN 140 (208)
Q Consensus 67 ~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~---~~~~~~~gi~~~~~p~~D---~~~~~~~~~~~~~~~~i~~~ 140 (208)
.+..|.+....-...+++.+|+.|||.+-++-.... ...++..|+.|+++-=+. .......+.+.++++.+...
T Consensus 46 ~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~~~~~~~~~v~~~~ea~~~~~~~ 125 (256)
T TIGR00715 46 TVHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERPPLALGKNIIEVPDIEEATRVAYQP 125 (256)
T ss_pred eEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCCCCCCCeEEeCCHHHHHHHhhhc
Confidence 355565544443367788999999999976532111 235567899999884321 11112234566777655431
Q ss_pred hhCCCcEEEEcCCCC
Q 028512 141 SCAGKTTYVHCKAGR 155 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~ 155 (208)
...+++|++ ..|.
T Consensus 126 ~~~~~~i~l--ttG~ 138 (256)
T TIGR00715 126 YLRGKRVFL--TAGA 138 (256)
T ss_pred cccCCcEEE--ecCc
Confidence 112456766 4453
No 114
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=49.77 E-value=13 Score=30.50 Aligned_cols=28 Identities=14% Similarity=0.282 Sum_probs=17.7
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+++|+++|..|. ||+ .++.+|. ..|.
T Consensus 229 ~~~~~ii~yC~~G~-~A~-~~~~~l~-~~G~ 256 (281)
T PRK11493 229 SFDRPIIASCGSGV-TAA-VVVLALA-TLDV 256 (281)
T ss_pred CCCCCEEEECCcHH-HHH-HHHHHHH-HcCC
Confidence 44679999999986 443 3443343 4455
No 115
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=48.73 E-value=28 Score=23.91 Aligned_cols=30 Identities=17% Similarity=-0.009 Sum_probs=18.5
Q ss_pred hhCCCcEEEEcCCCCC-hhHHHHHHHHHHhCCC
Q 028512 141 SCAGKTTYVHCKAGRG-RSTTIVLCYLVEYKHM 172 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~~-RS~~v~~ayL~~~~~~ 172 (208)
+..+.+|+|+|..|.. ||..++ ..| ...|.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a-~~l-~~~G~ 91 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAA-LKL-AELGF 91 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHH-HHH-HHcCC
Confidence 3457899999998863 444433 333 34455
No 116
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=48.59 E-value=57 Score=22.16 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=18.2
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
..+.+++|+|..|. ||... +..| +..|.+
T Consensus 56 ~~~~~ivv~c~~g~-~s~~a-~~~L-~~~G~~ 84 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQGA-AQYL-LQQGFD 84 (108)
T ss_pred CCCCCEEEEeCCCC-CHHHH-HHHH-HHCCch
Confidence 45689999999985 65443 3333 345653
No 117
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=46.96 E-value=32 Score=25.77 Aligned_cols=27 Identities=4% Similarity=0.033 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEcCCC
Q 028512 128 VDIRRAVDFIHSNSCAGKTTYVHCKAG 154 (208)
Q Consensus 128 ~~~~~~~~~i~~~~~~g~~VlVHC~~G 154 (208)
..+.-++..+.+...+|.+|+|+|...
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 356778888999999999999999655
No 118
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=46.22 E-value=24 Score=24.10 Aligned_cols=35 Identities=11% Similarity=0.367 Sum_probs=23.3
Q ss_pred EEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 028512 148 YVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCR 184 (208)
Q Consensus 148 lVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~ 184 (208)
..||.+ -|.+|-++ .++|...+++..+|++.+.+.
T Consensus 54 ~~~Cf~-Cg~~Gd~i-~~v~~~~~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 54 RFKCFG-CGKGGDVI-DFVMKYEGCSFKEAVKWLAEE 88 (97)
T ss_dssp EEEETT-T--EE-HH-HHHHHHHT--HHHHHHHHHHH
T ss_pred eEEECC-CCCCCcHH-hHHHHHhCCCHHHHHHHHHHH
Confidence 689985 46777664 456778899999999998764
No 119
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=44.67 E-value=67 Score=23.19 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHH
Q 028512 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVL 163 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ 163 (208)
.+.+.++.+.+.+.+.+|++|++. |-|-|++++.
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a~ 51 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIAS 51 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHHH
Confidence 467888999999999998888874 4456665543
No 120
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=43.69 E-value=73 Score=26.78 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=21.2
Q ss_pred HhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHH
Q 028512 140 NSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPA 175 (208)
Q Consensus 140 ~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~ 175 (208)
+...|-||.+||..|. |.+.=++-+|. ..|++++
T Consensus 151 ~~~TG~pI~~H~~~g~-~~~~e~~~il~-e~Gv~~~ 184 (308)
T PF02126_consen 151 HKETGAPISTHTGRGT-RMGLEQLDILE-EEGVDPS 184 (308)
T ss_dssp HHHHT-EEEEEESTTG-TCHHHHHHHHH-HTT--GG
T ss_pred HHHhCCeEEEcCCCCC-cCHHHHHHHHH-HcCCChh
Confidence 3345889999998885 46777777666 4566544
No 121
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=43.21 E-value=28 Score=27.20 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=19.2
Q ss_pred HHHHHHhCCCCHHHHHHHHHHh
Q 028512 163 LCYLVEYKHMAPAAALEYVRCR 184 (208)
Q Consensus 163 ~ayL~~~~~~s~~~A~~~vr~~ 184 (208)
=..||+.+|+|-++|++++|..
T Consensus 151 KglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 151 KGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 3579999999999999999954
No 122
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=42.56 E-value=75 Score=27.82 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=62.2
Q ss_pred ccccCcEEEecCCCCCC----hhHH---HhCCCcEEEEecCCCccC-CCCccccccCcEEEEEeCCCC----CCCCcHHH
Q 028512 62 DEVDQFLLLGAVPFPKD----VPRL---KQLGVGGVITLNEPYETL-VPSSLYHAHGIDHLVIPTRDY----LFAPSFVD 129 (208)
Q Consensus 62 ~~I~~~l~lG~~~~~~~----~~~L---~~~gI~~Vi~l~~~~e~~-~~~~~~~~~gi~~~~~p~~D~----~~~~~~~~ 129 (208)
++|.- -+|.-+...+ ++.+ .++|-.+|-+|+...... ......+...+-.=.+|+.+. ......-.
T Consensus 60 tKVNa--NIGtS~~~~d~~~E~~K~~~A~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t 137 (420)
T PF01964_consen 60 TKVNA--NIGTSSDYSDIEEELEKLKIAEKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMT 137 (420)
T ss_dssp -EEEE--EE--------HHHHHHHHHHHHHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--
T ss_pred eEEEe--eecCCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCC
Confidence 45543 4566555444 2333 469999999998764321 112233334444555554211 00111122
Q ss_pred HHHHHHHHHHHhhCC-CcEEEEcC----------------CCCChhHHHHHHHHHHhCCCC-----HHHHHHHHH-----
Q 028512 130 IRRAVDFIHSNSCAG-KTTYVHCK----------------AGRGRSTTIVLCYLVEYKHMA-----PAAALEYVR----- 182 (208)
Q Consensus 130 ~~~~~~~i~~~~~~g-~~VlVHC~----------------~G~~RS~~v~~ayL~~~~~~s-----~~~A~~~vr----- 182 (208)
.+.+.+.|+++.++| .-+-|||. .=+||.|++.++|+++...-+ +++-++..|
T Consensus 138 ~d~~~~~ie~qa~~GVDfmtiH~git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVt 217 (420)
T PF01964_consen 138 EDDFFDVIEKQAKDGVDFMTIHCGITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVT 217 (420)
T ss_dssp HHHHHHHHHHHHHHT--EEEE-TT--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-E
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCee
Confidence 355666677776665 36889995 126899999999999876543 445555555
Q ss_pred -----HhCCCCcCCHHHHHHHHHH
Q 028512 183 -----CRRPRVLLAPSQWKVRNRF 201 (208)
Q Consensus 183 -----~~Rp~~~~~~~~~~~L~~~ 201 (208)
..||+......-..|+.++
T Consensus 218 LSLGDglRPG~i~Da~D~aQi~EL 241 (420)
T PF01964_consen 218 LSLGDGLRPGCIADATDRAQIQEL 241 (420)
T ss_dssp EEE--TT--SSGGGTT-HHHHHHH
T ss_pred EecccccCCCCcCCCCcHHHHHHH
Confidence 4688887654444444433
No 123
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=41.79 E-value=68 Score=27.70 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=11.6
Q ss_pred hhCCCcEEEEcCCCC
Q 028512 141 SCAGKTTYVHCKAGR 155 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~ 155 (208)
+..|..||.||.+|.
T Consensus 164 I~dg~~ILThcnsg~ 178 (363)
T PRK05772 164 LNDGDTVLTQCNAGG 178 (363)
T ss_pred cCCCCEEEEecCCcc
Confidence 445778999998873
No 124
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.34 E-value=73 Score=18.59 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhCCC--CHHHHHHHHHHhCCCCcCCHHHHHHHH
Q 028512 158 STTIVLCYLVEYKHM--APAAALEYVRCRRPRVLLAPSQWKVRN 199 (208)
Q Consensus 158 S~~v~~ayL~~~~~~--s~~~A~~~vr~~Rp~~~~~~~~~~~L~ 199 (208)
+||+.+....+..|. ...++++.+ .+.+..+++..++.+.
T Consensus 3 ~GTlGiL~~Ak~~GlI~~~~~~l~~l--~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 3 TGTLGILLLAKRRGLISEVKPLLDRL--QQAGFRISPKLIEEIL 44 (48)
T ss_pred eehHHHHHHHHHcCChhhHHHHHHHH--HHcCcccCHHHHHHHH
Confidence 467777778888887 466666666 3456677777777654
No 125
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=40.89 E-value=70 Score=22.89 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHH
Q 028512 128 VDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTT 160 (208)
Q Consensus 128 ~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~ 160 (208)
..+.++.+.+.+....+.||+|..-.|.|++-+
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH
Confidence 356677777788778889999999999999964
No 126
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=40.51 E-value=1.1e+02 Score=22.08 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCCCCCcHHHHHHHHHHHHH----HhhCCCc-EEEEcCCCCChhHHHHHHHHHHhCC
Q 028512 111 IDHLVIPTRDYLFAPSFVDIRRAVDFIHS----NSCAGKT-TYVHCKAGRGRSTTIVLCYLVEYKH 171 (208)
Q Consensus 111 i~~~~~p~~D~~~~~~~~~~~~~~~~i~~----~~~~g~~-VlVHC~~G~~RS~~v~~ayL~~~~~ 171 (208)
+.-+.+|+.|.. +.+....+.++|.+ ..++++. .+.-|-+|=-++.++.++|.+...|
T Consensus 54 i~~i~~~~~DI~---t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~~iaGGRK~Ms~~~~~a~sl~g 116 (124)
T TIGR03642 54 VHKIPLKFDDIL---SDEDILTFMSIAAKEVKKERENYGCERIIVNISGGRKIMTIILALYAQLLF 116 (124)
T ss_pred EEEeccCccccC---CHHHHHHHHHHHHHHHHHHhhCCCcceEEEEecCCHHHHHHHHHHHHHHhC
Confidence 333445556643 33444444444444 3343332 3444567745677788888777666
No 127
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=40.29 E-value=45 Score=31.44 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=30.8
Q ss_pred ccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCC--CcEEEEcCCCCCh
Q 028512 104 SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAG--KTTYVHCKAGRGR 157 (208)
Q Consensus 104 ~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g--~~VlVHC~~G~~R 157 (208)
..|++.|+.|+ -|++.++ +++.+..+++..+.+ +||+||-..-+|+
T Consensus 320 ~lFe~lG~~Y~-GpvDGHd-------i~~Li~~l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 320 TLFEELGLYYI-GPVDGHN-------IEDLVCVLREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CcHHHcCCeEE-CccCCCC-------HHHHHHHHHHHHcCCCCCCEEEEEEecCCC
Confidence 57888899987 4555443 444444455444444 8999999877766
No 128
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=39.95 E-value=61 Score=27.68 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=14.0
Q ss_pred hhCCCcEEEEcCCCCChh
Q 028512 141 SCAGKTTYVHCKAGRGRS 158 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~~RS 158 (208)
+..|..||.||.+|..+|
T Consensus 145 I~~g~~ILThc~sg~lat 162 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLAC 162 (339)
T ss_pred ccCCCEEEEecCCccccc
Confidence 345778999999997664
No 129
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=39.82 E-value=16 Score=24.67 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.5
Q ss_pred CCCcccccCcEEEecCCCC
Q 028512 58 FRWWDEVDQFLLLGAVPFP 76 (208)
Q Consensus 58 ~~~~~~I~~~l~lG~~~~~ 76 (208)
..|+.+|.+++|+|+....
T Consensus 18 trwl~Ei~~GVyVg~~s~r 36 (86)
T PF09707_consen 18 TRWLLEIRPGVYVGNVSAR 36 (86)
T ss_pred hheeEecCCCcEEcCCCHH
Confidence 3588999999999976654
No 130
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=39.31 E-value=38 Score=27.95 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=17.9
Q ss_pred CCCChhHHHHHHHHHHhCCCCHHHHHH
Q 028512 153 AGRGRSTTIVLCYLVEYKHMAPAAALE 179 (208)
Q Consensus 153 ~G~~RS~~v~~ayL~~~~~~s~~~A~~ 179 (208)
-|.||||+-..+-|. .|.+.+.|.+
T Consensus 165 PG~SRSGaTI~~~ll--lG~~r~~Aae 189 (270)
T COG1968 165 PGTSRSGATISGGLL--LGLSREAAAE 189 (270)
T ss_pred CCCCccHHHHHHHHH--cCCCHHHHHH
Confidence 599999986665554 3888777644
No 131
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=39.23 E-value=76 Score=22.60 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCC----CHHHHHHHHHHhC
Q 028512 129 DIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM----APAAALEYVRCRR 185 (208)
Q Consensus 129 ~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~----s~~~A~~~vr~~R 185 (208)
.++.+...+....++ +|- ..|--|||.+++..++...|. +.+++.+++...-
T Consensus 50 i~~kAa~l~~~l~~~-HpF----~DGNKRta~~~~~~fL~~NG~~l~~~~~e~~~~~~~vA 105 (121)
T TIGR01550 50 IFEVSAVLLYALIRS-HPF----NNANKRTALNALLLFLELNGYEFTDSPEELIDFTVGVA 105 (121)
T ss_pred HHHHHHHHHHHHHHh-CCC----ccccHHHHHHHHHHHHHHCCcCCCCCHHHHHHHHHHHH
Confidence 466666665555442 332 478889999999998888774 5777777776553
No 132
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=38.81 E-value=58 Score=30.16 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=18.3
Q ss_pred hhCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+..+++|.++|..|. ||+.+. +.++..|.
T Consensus 220 i~~~~~VVvYC~sG~-rAa~~~--~~L~~lG~ 248 (610)
T PRK09629 220 ITPDKEVITHCQTHH-RSGFTY--LVAKALGY 248 (610)
T ss_pred CCCCCCEEEECCCCh-HHHHHH--HHHHHcCC
Confidence 345689999999985 665443 23334454
No 133
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=38.76 E-value=66 Score=27.34 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=25.7
Q ss_pred cCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028512 151 CKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRC 183 (208)
Q Consensus 151 C~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~ 183 (208)
++-|.+|... =++.+++...+|-++|++.|+.
T Consensus 283 ~KfG~~~~~~-~~s~~IR~G~itReeal~~v~~ 314 (343)
T TIGR03573 283 LKFGFGRATD-HASIDIRSGRITREEAIELVKE 314 (343)
T ss_pred hhcCCCcCch-HHHHHHHcCCCCHHHHHHHHHH
Confidence 4688887744 4456787888999999999998
No 134
>PRK07411 hypothetical protein; Validated
Probab=38.43 E-value=39 Score=29.32 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=19.1
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHHhCCCC
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
.+++|+|||..|. ||... +..| +..|.+
T Consensus 341 ~d~~IVvyC~~G~-RS~~a-a~~L-~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAKA-LGIL-KEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHHH-HHHH-HHcCCC
Confidence 4689999999985 88553 4444 355654
No 135
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=38.34 E-value=87 Score=18.59 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=22.1
Q ss_pred CCChhHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q 028512 154 GRGRSTTIVLCYLVEYKHMAPAAALEYVRCRR 185 (208)
Q Consensus 154 G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~R 185 (208)
|.+|...-++.-|+ ..|++|+.--..|+..|
T Consensus 18 gLd~etL~ici~L~-e~GVnPeaLA~vI~elr 48 (48)
T PF12554_consen 18 GLDRETLSICIELC-ENGVNPEALAAVIKELR 48 (48)
T ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHHHHhC
Confidence 89998766655566 57999986666666544
No 136
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=38.07 E-value=30 Score=24.08 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=11.0
Q ss_pred CcEEEEcCCCCChh
Q 028512 145 KTTYVHCKAGRGRS 158 (208)
Q Consensus 145 ~~VlVHC~~G~~RS 158 (208)
++||+-|.+|.+=|
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 46999999999433
No 137
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=37.65 E-value=71 Score=25.96 Aligned_cols=57 Identities=7% Similarity=-0.123 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHH------HHhCCCCHHHHHHHHHH
Q 028512 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYL------VEYKHMAPAAALEYVRC 183 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL------~~~~~~s~~~A~~~vr~ 183 (208)
..+..-+..+++-+.+.+.||.|||....+...-+.-.+- +....=+++.|-++++.
T Consensus 110 ~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 110 ERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 3455555566666666789999999865443333332221 10112267777777764
No 138
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.62 E-value=49 Score=22.74 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCC
Q 028512 130 IRRAVDFIHSNSCAGKTTYVHCKAGR 155 (208)
Q Consensus 130 ~~~~~~~i~~~~~~g~~VlVHC~~G~ 155 (208)
-..+++.|.+...+.+||++|=..|-
T Consensus 10 T~aAl~Li~~l~~~hgpvmFHQSGGC 35 (116)
T COG3564 10 TPAALDLIAELQAEHGPVMFHQSGGC 35 (116)
T ss_pred CHHHHHHHHHHHHhcCCEEEeccCCc
Confidence 35678888888888899999966553
No 139
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=37.07 E-value=83 Score=25.00 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCR 184 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~ 184 (208)
-+|+|.|||.. .+...+++-+||....|+-+++..++++.
T Consensus 184 lNGriWV~ae~--~~~t~~i~~~l~~~e~~td~~q~~~~k~~ 223 (230)
T KOG1004|consen 184 LNGRIWVKAET--LSDTLIIANILMNCEFMTDTQQRIMVKQL 223 (230)
T ss_pred cCceEEEeccC--cchHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 37999999987 46677888889999999999888766653
No 140
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=36.87 E-value=55 Score=26.77 Aligned_cols=32 Identities=3% Similarity=-0.069 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEcCCCCChhH
Q 028512 128 VDIRRAVDFIHSNSCAGKTTYVHCKAGRGRST 159 (208)
Q Consensus 128 ~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~ 159 (208)
.+..-+..+|.-+.+.+.||.|||+.-...+-
T Consensus 109 ~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~ 140 (256)
T COG0084 109 RQEEVFEAQLELAKELNLPVIIHTRDAHEDTL 140 (256)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccccHHHHH
Confidence 34555566666666677888888876544443
No 141
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=36.44 E-value=1.2e+02 Score=22.70 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHH
Q 028512 126 SFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~ 162 (208)
..+.+.++++.|.+.+.++++|++. |.|.|..++
T Consensus 15 ~~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 15 LAEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 3577899999999988877888875 666676665
No 142
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=35.53 E-value=38 Score=24.60 Aligned_cols=63 Identities=22% Similarity=0.317 Sum_probs=38.2
Q ss_pred HHHHhhhcceEEecchhhHHHH------HhhhhccCCCcccccCcEEEecCCCCCChhHHHhCCCcEEEEecC
Q 028512 29 KRALVGAGARILFYPTLLYNVF------RNKIQAEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNE 95 (208)
Q Consensus 29 ~~~~~~~~~~~l~~P~l~~~~~------~~~~~~~~~~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~ 95 (208)
.++.....+.++.+..+..... ...+... ... ...+++|+.....+.+.|+++||+.++....
T Consensus 46 v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~--g~~--~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 46 ARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKL--GRP--DILVVVGGVIPPQDFDELKEMGVAEIFGPGT 114 (132)
T ss_pred HHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhc--CCC--CCEEEEeCCCChHhHHHHHHCCCCEEECCCC
Confidence 3445556666666655543211 1122111 111 2358999887778899999999999986654
No 143
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=35.44 E-value=2e+02 Score=24.72 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=52.9
Q ss_pred hHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeC-CCCCCCCc---------HHHHHHHHHHHHHHhhCCCcEEE
Q 028512 80 PRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPT-RDYLFAPS---------FVDIRRAVDFIHSNSCAGKTTYV 149 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~-~D~~~~~~---------~~~~~~~~~~i~~~~~~g~~VlV 149 (208)
+.|+++||..+|-+..+.....-....+..++..+.+|- -|++...+ .+...++++-+........++.|
T Consensus 88 ~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~~~eaid~l~dtassh~r~~i 167 (347)
T COG0205 88 ENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALETAVEAIDNLRDTASSHERIFI 167 (347)
T ss_pred HHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHHHHHHHHHHHHHHHhCcCCEEE
Confidence 468899999999998765432112222233489999995 33322211 13334445555555556789999
Q ss_pred EcCCCCChhHHHHHHHHH
Q 028512 150 HCKAGRGRSTTIVLCYLV 167 (208)
Q Consensus 150 HC~~G~~RS~~v~~ayL~ 167 (208)
+=..|++-+-....|-+.
T Consensus 168 veVMGR~aG~lAl~aglA 185 (347)
T COG0205 168 VEVMGRHAGWLALAAGLA 185 (347)
T ss_pred EEecCcChhHHHHHHHHh
Confidence 999997665554444443
No 144
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=35.34 E-value=27 Score=22.95 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=12.2
Q ss_pred cEEEEcCCCCChhHHH
Q 028512 146 TTYVHCKAGRGRSTTI 161 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v 161 (208)
+|++-|.+|+|=|-++
T Consensus 1 kIlvvC~~Gi~TS~~~ 16 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMV 16 (90)
T ss_dssp EEEEEESSSSHHHHHH
T ss_pred CEEEECCChHHHHHHH
Confidence 5899999999755433
No 145
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=34.69 E-value=2.1e+02 Score=22.58 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCC--CH-------HHHHHHHHHhCCC----CcCCHHHHH
Q 028512 130 IRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM--AP-------AAALEYVRCRRPR----VLLAPSQWK 196 (208)
Q Consensus 130 ~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~--s~-------~~A~~~vr~~Rp~----~~~~~~~~~ 196 (208)
+..+.++|.....+|.++.+....+ +||..-.+..|....|. ++ ..+..+++++.|. +.-+++..+
T Consensus 16 ~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~~~~~v~v~G~~~~~~ 94 (236)
T TIGR01460 16 IPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRFEGEKVYVIGVGELRE 94 (236)
T ss_pred CcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhCCCCEEEEECCHHHHH
Confidence 5567788888888888888876554 68888888888874554 33 3356777765443 222555666
Q ss_pred HHHH
Q 028512 197 VRNR 200 (208)
Q Consensus 197 ~L~~ 200 (208)
.|+.
T Consensus 95 ~l~~ 98 (236)
T TIGR01460 95 SLEG 98 (236)
T ss_pred HHHH
Confidence 6554
No 146
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=34.55 E-value=2.6e+02 Score=22.89 Aligned_cols=123 Identities=9% Similarity=-0.024 Sum_probs=68.2
Q ss_pred hHHHhCCCcEEEEecCCCccCCCC-------ccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcC
Q 028512 80 PRLKQLGVGGVITLNEPYETLVPS-------SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCK 152 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~e~~~~~-------~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~ 152 (208)
+..++.|....+++........+. ....+.|...+.++. ....-....+...+..+.+... .++-+||.
T Consensus 125 ~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~D--T~G~~~P~~v~~lv~~l~~~~~--~~l~~H~H 200 (275)
T cd07937 125 KAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKD--MAGLLTPYAAYELVKALKKEVG--LPIHLHTH 200 (275)
T ss_pred HHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcC--CCCCCCHHHHHHHHHHHHHhCC--CeEEEEec
Confidence 455778987776664211111111 122356777766664 3334456677777777776543 78899998
Q ss_pred CCCChhHHHHHHHHHH---------------hCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHh
Q 028512 153 AGRGRSTTIVLCYLVE---------------YKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSYALL 206 (208)
Q Consensus 153 ~G~~RS~~v~~ayL~~---------------~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~L~ 206 (208)
.-.|-+.+-+.+.+.. ..+.+.++.+..++...-....+...+..+.+|-..++
T Consensus 201 nd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~ 269 (275)
T cd07937 201 DTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVR 269 (275)
T ss_pred CCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHH
Confidence 6665554433333321 01346777777777653333345666666666655543
No 147
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=34.53 E-value=93 Score=26.50 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=11.0
Q ss_pred hhCCC----cEEEEcCCC
Q 028512 141 SCAGK----TTYVHCKAG 154 (208)
Q Consensus 141 ~~~g~----~VlVHC~~G 154 (208)
+..|. .||.||.+|
T Consensus 140 I~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 140 IKKGVAAPLRVLTHCNTG 157 (331)
T ss_pred hcCCCCCCceEEeecCCc
Confidence 34566 799999987
No 148
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=34.45 E-value=60 Score=22.26 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=17.8
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
.+.+|+++|..|. ||..++ +.+...|.
T Consensus 77 ~~~~iv~yc~~g~-~s~~~~--~~l~~~G~ 103 (118)
T cd01449 77 PDKPVIVYCGSGV-TACVLL--LALELLGY 103 (118)
T ss_pred CCCCEEEECCcHH-HHHHHH--HHHHHcCC
Confidence 4689999999884 665543 33444565
No 149
>PHA03338 US22 family homolog; Provisional
Probab=34.41 E-value=41 Score=28.00 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=26.9
Q ss_pred EEcCCCCChhHHHHHH-HHHHhCCCCHHHHHHHHHHhCC
Q 028512 149 VHCKAGRGRSTTIVLC-YLVEYKHMAPAAALEYVRCRRP 186 (208)
Q Consensus 149 VHC~~G~~RS~~v~~a-yL~~~~~~s~~~A~~~vr~~Rp 186 (208)
+||.+|.+-||.+.-- |++..++..++....+|.....
T Consensus 161 ihC~agl~esgill~R~w~~ir~~~g~dav~RFviR~HG 199 (344)
T PHA03338 161 IHCRAGLGEIGILLGRLWLLIRQGADADAVARFVVRAHG 199 (344)
T ss_pred eccccccchhHHHHHHHHHHHHhhcCcchhhhhhhhccC
Confidence 5999999999887754 4555567677766666655543
No 150
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=34.04 E-value=29 Score=24.56 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=24.7
Q ss_pred cEEEecCCCCCChhHHHhCCCcEEEEecCC
Q 028512 67 FLLLGAVPFPKDVPRLKQLGVGGVITLNEP 96 (208)
Q Consensus 67 ~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~ 96 (208)
.+++|+.....+.+.++++||+.++....+
T Consensus 83 ~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 83 LVVGGGIIPPEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCC
Confidence 478998776777889999999999977654
No 151
>COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.99 E-value=1.5e+02 Score=25.93 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=35.7
Q ss_pred HHHHHHhhCCCcEEEEcCCCCChh---HHHHHHHHHHhCCCCHHHHHHHHHH
Q 028512 135 DFIHSNSCAGKTTYVHCKAGRGRS---TTIVLCYLVEYKHMAPAAALEYVRC 183 (208)
Q Consensus 135 ~~i~~~~~~g~~VlVHC~~G~~RS---~~v~~ayL~~~~~~s~~~A~~~vr~ 183 (208)
.-+....+.|-+|.+.+-.|.+.+ -.+.+.+++ ..|||++||++.+..
T Consensus 297 ~~~~~l~~~GV~vai~TD~~~~~~~~~l~~~m~l~~-~~gmtp~EaL~a~T~ 347 (406)
T COG1228 297 KPARKLIDAGVKVAIGTDHNPGTSHGSLALEMALAV-RLGMTPEEALKAATI 347 (406)
T ss_pred hhHHHHHHCCCEEEEEcCCCCCchhhHHHHHHHHHH-HcCCCHHHHHHHHHH
Confidence 335667778899999999999884 234455555 456999999998863
No 152
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=33.26 E-value=48 Score=22.86 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCCChhHHHHHHHHHHhCCCC-HHHHHHHHH
Q 028512 144 GKTTYVHCKAGRGRSTTIVLCYLVEYKHMA-PAAALEYVR 182 (208)
Q Consensus 144 g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s-~~~A~~~vr 182 (208)
.++|+=||-.| .-++-||+.....+ -.||+..-.
T Consensus 24 ~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las 58 (99)
T cd04445 24 DKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLAS 58 (99)
T ss_pred hhccccceecc-----cHHHHHHHHhhcccchHHHHHHHH
Confidence 37899999888 45778999887774 788876543
No 153
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=32.47 E-value=75 Score=20.39 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=16.9
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMA 173 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s 173 (208)
..+.+|+|+|..|. |+.. ++ ..+...|.+
T Consensus 54 ~~~~~iv~~c~~g~-~a~~-~~-~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSAK-AA-WLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HHHH-HH-HHHHHcCCC
Confidence 34689999996654 5533 33 333345553
No 154
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=32.21 E-value=1.4e+02 Score=25.95 Aligned_cols=71 Identities=14% Similarity=0.245 Sum_probs=40.5
Q ss_pred cccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHh
Q 028512 105 LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCR 184 (208)
Q Consensus 105 ~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~ 184 (208)
..++.||.|..+|+.+.+ ....+.+.+++. .+-+-|+|.=+.|++--.++.+. ...++++.||+.
T Consensus 123 SL~e~Gi~Y~~v~L~~dg-~~D~~~i~~~~~------~~tk~v~IQRSrGYs~R~sl~i~--------~I~~~i~~vk~~ 187 (403)
T PF06838_consen 123 SLKEFGIKYREVPLTEDG-TIDWEAIKKALK------PNTKMVLIQRSRGYSWRPSLTIE--------EIKEIIKFVKEI 187 (403)
T ss_dssp STGGGT-EEEE--B-TTS-SB-HHHHHHHHH------TTEEEEEEE-S-TTSSS----HH--------HHHHHHHHHHHH
T ss_pred ChHHhCceeEEEeecCCC-CcCHHHHHHhhc------cCceEEEEecCCCCCCCCCCCHH--------HHHHHHHHHHhh
Confidence 345789999999997765 444555555443 22367899988888744444332 467789999999
Q ss_pred CCCCcC
Q 028512 185 RPRVLL 190 (208)
Q Consensus 185 Rp~~~~ 190 (208)
+|.++.
T Consensus 188 ~p~~ii 193 (403)
T PF06838_consen 188 NPDVII 193 (403)
T ss_dssp -TTSEE
T ss_pred CCCeEE
Confidence 998753
No 155
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=32.16 E-value=77 Score=29.80 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=27.8
Q ss_pred ccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCC--CCChhH
Q 028512 104 SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKA--GRGRST 159 (208)
Q Consensus 104 ~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~--G~~RS~ 159 (208)
..|+..|++|+ -|++.++ .+.+.++++.+.+. ..++|++||+.. |+|=..
T Consensus 276 ~~fe~~G~~y~-g~iDGHd----~~~L~~al~~~k~~-~~~~P~vihv~T~KGkG~~~ 327 (677)
T PLN02582 276 TLFEELGLYYI-GPVDGHN----IDDLVTILREVKST-KTTGPVLIHVVTEKGRGYPY 327 (677)
T ss_pred chHHHcCCeEE-eeeCCCC----HHHHHHHHHHHHhc-CCCCCEEEEEEecCCCCCCh
Confidence 35778888887 3444332 34444444433321 115899999974 444343
No 156
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=31.36 E-value=2.7e+02 Score=22.11 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=39.8
Q ss_pred ChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCC----CCCcHHHHHHHHHHHHHHhhCCCcEEEEcCC
Q 028512 78 DVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYL----FAPSFVDIRRAVDFIHSNSCAGKTTYVHCKA 153 (208)
Q Consensus 78 ~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~----~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~ 153 (208)
-.+.|++.|+..|++-........+....-..++.|+++--.... ..-+.+.+++.++.|.....+|+.|+|-...
T Consensus 134 ~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~fnN 213 (230)
T PF01904_consen 134 VFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFFNN 213 (230)
T ss_dssp HHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-S
T ss_pred HHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 356788999999987765522111111111136777776654322 1224578899999999988877776665443
No 157
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=31.33 E-value=1.6e+02 Score=22.55 Aligned_cols=32 Identities=34% Similarity=0.567 Sum_probs=19.9
Q ss_pred HHHHhhCCCcEEEEcC--CCCChhHHHHHHHHHHh
Q 028512 137 IHSNSCAGKTTYVHCK--AGRGRSTTIVLCYLVEY 169 (208)
Q Consensus 137 i~~~~~~g~~VlVHC~--~G~~RS~~v~~ayL~~~ 169 (208)
++...+.|+.|+||-- .|.++. -.++-||...
T Consensus 37 v~~~~~~gK~vfVHiDli~Gl~~D-~~~i~~L~~~ 70 (175)
T PF04309_consen 37 VKRLKAAGKKVFVHIDLIEGLSRD-EAGIEYLKEY 70 (175)
T ss_dssp HHHHHHTT-EEEEECCGEETB-SS-HHHHHHHHHT
T ss_pred HHHHHHcCCEEEEEehhcCCCCCC-HHHHHHHHHc
Confidence 3444557899999987 677766 4455566654
No 158
>PRK13936 phosphoheptose isomerase; Provisional
Probab=31.24 E-value=1.5e+02 Score=22.83 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHH
Q 028512 128 VDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCY 165 (208)
Q Consensus 128 ~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ay 165 (208)
+.+.++++.+.+.+.++++|++. |.|.|+.++.-+
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~---G~G~S~~~A~~~ 61 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC---GNGGSAADAQHF 61 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHHHHH
Confidence 45677888888888888999886 777887766433
No 159
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=31.17 E-value=73 Score=28.50 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=19.1
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+++++++|..|. ||..++ .+|. ..|.
T Consensus 447 ~~~~~iivyC~~G~-rS~~aa-~~L~-~~G~ 474 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MSRLQA-LYLR-EQGF 474 (482)
T ss_pred CCCCeEEEECCCCH-HHHHHH-HHHH-HcCC
Confidence 45689999999995 775554 4444 3454
No 160
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.59 E-value=44 Score=23.04 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=12.5
Q ss_pred cEEEEcCCCCChhHHHHHHH
Q 028512 146 TTYVHCKAGRGRSTTIVLCY 165 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v~~ay 165 (208)
+|++-|.+| .|.++++--
T Consensus 2 ~Ill~C~~G--aSSs~la~k 19 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANA 19 (99)
T ss_pred EEEEECCCC--CCHHHHHHH
Confidence 489999777 566665543
No 161
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=30.54 E-value=1.4e+02 Score=25.28 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=37.0
Q ss_pred hCCCcEEEEcCCCCC-hhHHHHHHHHHHhCC----CCHHHHHHHHHHhCCCCcCCHHHHHHH
Q 028512 142 CAGKTTYVHCKAGRG-RSTTIVLCYLVEYKH----MAPAAALEYVRCRRPRVLLAPSQWKVR 198 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~-RS~~v~~ayL~~~~~----~s~~~A~~~vr~~Rp~~~~~~~~~~~L 198 (208)
..|-||+.|...|++ ++|+. -++...| .+++++.+.+.+......+.+.+-..+
T Consensus 97 ~~G~~V~kHG~r~~~s~~Gs~---d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~ 155 (330)
T TIGR01245 97 AAGVKVAKHGNRSVSSKSGSA---DVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAM 155 (330)
T ss_pred hCCCEEEEeCCCCCCCCccHH---HHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHH
Confidence 358999999998887 88762 3444445 478889999988776555544443333
No 162
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=30.27 E-value=67 Score=21.58 Aligned_cols=29 Identities=3% Similarity=0.221 Sum_probs=21.8
Q ss_pred HHHHHHHhhCCCcEEEEcCCCCChhHHHH
Q 028512 134 VDFIHSNSCAGKTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 134 ~~~i~~~~~~g~~VlVHC~~G~~RS~~v~ 162 (208)
.+++..++..+++|+|+++.|..=.|++.
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~G~L~ 32 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLLGRVK 32 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEEEEEE
Confidence 34566777678999999999987666543
No 163
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.06 E-value=1.8e+02 Score=19.73 Aligned_cols=69 Identities=17% Similarity=0.059 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCH---------HHHHHHHHHhCCCCc----CCHHHHH
Q 028512 130 IRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAP---------AAALEYVRCRRPRVL----LAPSQWK 196 (208)
Q Consensus 130 ~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~---------~~A~~~vr~~Rp~~~----~~~~~~~ 196 (208)
+..+.++|+...+.|+++++.-..+ +||..-.+..|- ..|.+. ..+..++++..+... -+++..+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~~~L~-~~Gi~~~~~~i~ts~~~~~~~l~~~~~~~~v~vlG~~~l~~ 93 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNS-SRSREEYAKKLK-KLGIPVDEDEIITSGMAAAEYLKEHKGGKKVYVLGSDGLRE 93 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHHHHHH-HTTTT--GGGEEEHHHHHHHHHHHHTTSSEEEEES-HHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHHHHHH-hcCcCCCcCEEEChHHHHHHHHHhcCCCCEEEEEcCHHHHH
Confidence 5567788888888888888875554 688777777664 567653 336677776443322 2555555
Q ss_pred HHHH
Q 028512 197 VRNR 200 (208)
Q Consensus 197 ~L~~ 200 (208)
.|.+
T Consensus 94 ~l~~ 97 (101)
T PF13344_consen 94 ELRE 97 (101)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 164
>PRK02947 hypothetical protein; Provisional
Probab=29.58 E-value=1.1e+02 Score=24.62 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHH
Q 028512 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVL 163 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ 163 (208)
.+.++++++.+.+.+.++++|++. |.|.|+.++.
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA~ 56 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVF---GTGHSHILAE 56 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHHH
Confidence 467889999999998888999986 6667776654
No 165
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=29.24 E-value=1.9e+02 Score=23.86 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHH
Q 028512 132 RAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYL 166 (208)
Q Consensus 132 ~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL 166 (208)
+.+..|.+.+.+|+.+++.--.|.|.|.++.++.+
T Consensus 15 ~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 15 EFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 34444556667789999999999999977665554
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=29.24 E-value=1.9e+02 Score=23.86 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHH
Q 028512 132 RAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYL 166 (208)
Q Consensus 132 ~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL 166 (208)
+.+..|.+.+.+|+.+++.--.|.|.|.++.++.+
T Consensus 15 ~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 15 EFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 34444556667789999999999999977665554
No 167
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=29.20 E-value=3.2e+02 Score=22.28 Aligned_cols=125 Identities=13% Similarity=0.005 Sum_probs=68.9
Q ss_pred hhHHHhCCCcEEEEecCCCccCCC-----CccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCC
Q 028512 79 VPRLKQLGVGGVITLNEPYETLVP-----SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKA 153 (208)
Q Consensus 79 ~~~L~~~gI~~Vi~l~~~~e~~~~-----~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~ 153 (208)
++..++.|+...+++......... .....+.|...+.++.. ...-.+..+.+.+..+.+....+-++-+||..
T Consensus 115 i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT--~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn 192 (266)
T cd07944 115 IKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS--FGSMYPEDIKRIISLLRSNLDKDIKLGFHAHN 192 (266)
T ss_pred HHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC--CCCCCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 345567899888887654321000 11223457776666643 33556677888888877665444789999987
Q ss_pred CCChhHHHHHHHHHH---------------hCCCCHHHHHHHHHHhCCCCcCCHHHHHHHH-HHHHHHh
Q 028512 154 GRGRSTTIVLCYLVE---------------YKHMAPAAALEYVRCRRPRVLLAPSQWKVRN-RFSYALL 206 (208)
Q Consensus 154 G~~RS~~v~~ayL~~---------------~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~-~~~~~L~ 206 (208)
-.|=+.+-+.+.+-. ..+.+.++.+..++... ..-.+......+. +|-..+.
T Consensus 193 ~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~~~-~~~~dl~~l~~~~~~~~~~~~ 260 (266)
T cd07944 193 NLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLNNKF-GKKYNLEPVLELIDEYIAPLK 260 (266)
T ss_pred CccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHHHH
Confidence 666444433333221 01345677777776653 2234444433333 4444443
No 168
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=28.97 E-value=1.7e+02 Score=23.29 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHH----hhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHH
Q 028512 128 VDIRRAVDFIHSN----SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEY 180 (208)
Q Consensus 128 ~~~~~~~~~i~~~----~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~ 180 (208)
..+..+..+.++. ...|+.|+|+|.+..-|+ +++...|.+.++....
T Consensus 136 ~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR~------i~~~l~g~s~~~i~~~ 186 (214)
T KOG0235|consen 136 DCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRA------IVKHLEGISDEAIKEL 186 (214)
T ss_pred HHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHHH------HHHHHhcCCHhhhhhe
Confidence 3445555555543 345889999987744444 5666678877665443
No 169
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=28.74 E-value=2.8e+02 Score=21.67 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCC-----CChhHHHHHHHHHHhCCCCHHHHHHHHH
Q 028512 130 IRRAVDFIHSNSCAGKTTYVHCKAG-----RGRSTTIVLCYLVEYKHMAPAAALEYVR 182 (208)
Q Consensus 130 ~~~~~~~i~~~~~~g~~VlVHC~~G-----~~RS~~v~~ayL~~~~~~s~~~A~~~vr 182 (208)
......-+.+..+.|.+|.+-.-.+ .+......+..++...|+++++|++.+.
T Consensus 222 ~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T 279 (304)
T PF13147_consen 222 LREDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAAT 279 (304)
T ss_dssp THHHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHT
T ss_pred chhhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHH
Confidence 4444555667777888999987765 4455556666666678999999998875
No 170
>PHA02540 61 DNA primase; Provisional
Probab=28.44 E-value=2.9e+02 Score=23.59 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=27.6
Q ss_pred cEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q 028512 146 TTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRR 185 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~R 185 (208)
....||-.. |-+|. ++.+||.+.++++.||++.+....
T Consensus 53 ~~~yhCFgC-Ga~Gd-~i~Flme~e~lsf~Eav~~la~~~ 90 (337)
T PHA02540 53 GGVFKCHNC-GYHRP-FGNFLKDYEPDLYREYIMERFKER 90 (337)
T ss_pred ceEEEecCC-CCCCC-HHHHHHHhcCCChHHHHHHHHHHh
Confidence 578999732 34443 456899999999999999765443
No 171
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=27.83 E-value=3.8e+02 Score=22.78 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=20.9
Q ss_pred ccccCcEEEec--CCCCCChhHH----HhCCCcEEEEecCC
Q 028512 62 DEVDQFLLLGA--VPFPKDVPRL----KQLGVGGVITLNEP 96 (208)
Q Consensus 62 ~~I~~~l~lG~--~~~~~~~~~L----~~~gI~~Vi~l~~~ 96 (208)
.-|+.++.++. .+...+.... ..-|+++|++....
T Consensus 15 G~iD~HvH~~~~~~~~~e~~~s~s~aA~~GGvTtii~~p~~ 55 (374)
T cd01317 15 GLVDLHVHLREPGFEYKETLESGAKAAAAGGFTTVVCMPNT 55 (374)
T ss_pred CEEeeccccCCCCccccchHHHHHHHHHhCCCcEEEECCCC
Confidence 34666666554 3334444433 34789999998654
No 172
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=27.50 E-value=71 Score=25.56 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=21.1
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHhhCC-CcEEEEcC-CCCChhHHHHHHHHH
Q 028512 119 RDYLFAPSFVDIRRAVDFIHSNSCAG-KTTYVHCK-AGRGRSTTIVLCYLV 167 (208)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~i~~~~~~g-~~VlVHC~-~G~~RS~~v~~ayL~ 167 (208)
.|.+.....+++. ..+.-+.++| ++|+|||- .|++=++.-+..||-
T Consensus 37 SdGGVHSh~~Hl~---al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~ 84 (223)
T PF06415_consen 37 SDGGVHSHIDHLF---ALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLE 84 (223)
T ss_dssp SS-SSS--HHHHH---HHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHH
T ss_pred cCCCccccHHHHH---HHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHH
Confidence 4544333333333 3344444455 46778875 476655554444443
No 173
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=27.43 E-value=43 Score=28.40 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=12.0
Q ss_pred hhCCCcEEEEcCCCC
Q 028512 141 SCAGKTTYVHCKAGR 155 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~ 155 (208)
+.+|..||-||.+|-
T Consensus 147 l~~~~~VLThCNaGa 161 (346)
T COG0182 147 LPDGDTVLTHCNAGA 161 (346)
T ss_pred hccCCeEEeeecCCc
Confidence 445778999999884
No 174
>PRK14071 6-phosphofructokinase; Provisional
Probab=27.26 E-value=2.8e+02 Score=23.82 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=56.9
Q ss_pred hhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCC-CCCCC--CcHHHHHH----HHHHHHHHh---hCCCcEE
Q 028512 79 VPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTR-DYLFA--PSFVDIRR----AVDFIHSNS---CAGKTTY 148 (208)
Q Consensus 79 ~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~-D~~~~--~~~~~~~~----~~~~i~~~~---~~g~~Vl 148 (208)
.+.|++++|+++|-+........-....+..++..+.+|-. |++.+ +..-=|.. +.+.++... ....+|+
T Consensus 100 ~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~~~~~id~i~~ta~s~~rv~ 179 (360)
T PRK14071 100 IDGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNIATEALDRLHFTAASHNRVM 179 (360)
T ss_pred HHHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHHHHHHHHHHHhhhcccCCEE
Confidence 56778999999999986543211111222248999999962 33221 11111222 333333322 2345788
Q ss_pred EEcCCCCChhHHHHHHHHHHh---------CCCCHHHHHHHHHHh
Q 028512 149 VHCKAGRGRSTTIVLCYLVEY---------KHMAPAAALEYVRCR 184 (208)
Q Consensus 149 VHC~~G~~RS~~v~~ayL~~~---------~~~s~~~A~~~vr~~ 184 (208)
|.=..|.+ +|-+++.--+.. ..++.++-++.++++
T Consensus 180 ivEvMGR~-~G~LAl~~~la~ga~~iliPE~~~~~~~l~~~i~~~ 223 (360)
T PRK14071 180 ILEVMGRD-AGHIALAAGIAGGADVILIPEIPYTLENVCKKIRER 223 (360)
T ss_pred EEEECCCC-ccHHHHHhHhhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 88888864 444443222221 246777777777654
No 175
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=27.22 E-value=3.2e+02 Score=21.67 Aligned_cols=119 Identities=10% Similarity=0.030 Sum_probs=66.5
Q ss_pred hhHHHhCCCcEEEEecCCCccCCC-------CccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEc
Q 028512 79 VPRLKQLGVGGVITLNEPYETLVP-------SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHC 151 (208)
Q Consensus 79 ~~~L~~~gI~~Vi~l~~~~e~~~~-------~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC 151 (208)
++.+++.|+...+++..-.....+ .....+.|...+.++... .....+.+.+.+..+.+.... -++-+||
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~--G~~~P~~v~~li~~l~~~~~~-~~~~~H~ 197 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTV--GLATPEEVAELVKALREALPD-VPLGLHT 197 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhc--CCcCHHHHHHHHHHHHHhCCC-CeEEEEe
Confidence 345678999999999543220011 112335677777665433 355667788888888776543 7888888
Q ss_pred CCCCChhHHHHHHHHHH---------------hCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHH
Q 028512 152 KAGRGRSTTIVLCYLVE---------------YKHMAPAAALEYVRCRRPRVLLAPSQWKVRNR 200 (208)
Q Consensus 152 ~~G~~RS~~v~~ayL~~---------------~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~ 200 (208)
..-.|=+.+-+++.+.. ..+.+.++.+..++..-...-.+...+..+.+
T Consensus 198 Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~~ 261 (265)
T cd03174 198 HNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGLGIDTGIDLEKLLEISR 261 (265)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 76554332222222211 12356777777777764333334444444433
No 176
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=27.20 E-value=1.3e+02 Score=22.79 Aligned_cols=71 Identities=10% Similarity=0.093 Sum_probs=48.2
Q ss_pred HHHHHhhCCCcEEEEcC--CCCChhHHHHHHHHHHh----------CCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHH
Q 028512 136 FIHSNSCAGKTTYVHCK--AGRGRSTTIVLCYLVEY----------KHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSY 203 (208)
Q Consensus 136 ~i~~~~~~g~~VlVHC~--~G~~RS~~v~~ayL~~~----------~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~ 203 (208)
.+.+.+.. ..|+||=- .-+.|+++|-+.||... .-+++++.+..+...-...+ .......|..|..
T Consensus 19 lvke~l~E-~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Eiefs~f-~~plk~~Le~yk~ 96 (172)
T KOG0870|consen 19 LVKEVLPE-SNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEIEFSSF-VNPLKSALEAYKK 96 (172)
T ss_pred HHHHhCcc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhchHHH-hhHHHHHHHHHHH
Confidence 34444444 35777743 45679999888888743 34689999998888764433 4566778888887
Q ss_pred HHhCC
Q 028512 204 ALLLK 208 (208)
Q Consensus 204 ~L~~k 208 (208)
...+|
T Consensus 97 ~~k~K 101 (172)
T KOG0870|consen 97 AVKQK 101 (172)
T ss_pred HHHHH
Confidence 77654
No 177
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.57 E-value=59 Score=22.63 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=12.6
Q ss_pred CcEEEEcCCCCChhHH
Q 028512 145 KTTYVHCKAGRGRSTT 160 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~ 160 (208)
.++++-|.+|.|-|-+
T Consensus 2 k~IlLvC~aGmSTSlL 17 (102)
T COG1440 2 KKILLVCAAGMSTSLL 17 (102)
T ss_pred ceEEEEecCCCcHHHH
Confidence 4689999999986633
No 178
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=26.26 E-value=80 Score=29.22 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=27.5
Q ss_pred CcEEEEcCCCCChhHHHHHHHHHH---hCCCCHHHHHHHHHH
Q 028512 145 KTTYVHCKAGRGRSTTIVLCYLVE---YKHMAPAAALEYVRC 183 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~~ayL~~---~~~~s~~~A~~~vr~ 183 (208)
.|..|||..|. ++++.++||+ ..+++.++|+..++.
T Consensus 161 ~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 161 DPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 78999999997 4677777754 357888988876653
No 179
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=26.04 E-value=1.4e+02 Score=25.69 Aligned_cols=12 Identities=42% Similarity=0.958 Sum_probs=9.2
Q ss_pred CCCcEEEEcCCCC
Q 028512 143 AGKTTYVHCKAGR 155 (208)
Q Consensus 143 ~g~~VlVHC~~G~ 155 (208)
.|. ||.||.+|-
T Consensus 160 dg~-ILTHcnaG~ 171 (356)
T PRK08334 160 EGN-VLTHCNAGS 171 (356)
T ss_pred CCC-EEEecCcch
Confidence 444 999998874
No 180
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=26.02 E-value=69 Score=26.91 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=17.6
Q ss_pred hhCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 141 SCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
+..+++|+++|..|. |+ ++++..|. ..|.
T Consensus 266 i~~~~~iv~yC~sG~-~A-~~~~~~L~-~~G~ 294 (320)
T PLN02723 266 ISLDSPIVASCGTGV-TA-CILALGLH-RLGK 294 (320)
T ss_pred CCCCCCEEEECCcHH-HH-HHHHHHHH-HcCC
Confidence 345689999998875 44 33333333 4454
No 181
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=25.95 E-value=2.9e+02 Score=23.11 Aligned_cols=40 Identities=13% Similarity=-0.032 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHH
Q 028512 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVE 168 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~ 168 (208)
....-.++.-+.+.+.+-+|=+|||. | +|..+++++....
T Consensus 68 ~~~~~~~~~~l~~~l~~~~pDiv~~~-g-d~~~~la~a~aa~ 107 (365)
T TIGR00236 68 GEITSNMLEGLEELLLEEKPDIVLVQ-G-DTTTTLAGALAAF 107 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEe-C-CchHHHHHHHHHH
Confidence 34444444444555554456566665 2 3444444444333
No 182
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=25.83 E-value=1.7e+02 Score=21.63 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=17.3
Q ss_pred hHHHhCCCcEEEEecCCCccC
Q 028512 80 PRLKQLGVGGVITLNEPYETL 100 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~e~~ 100 (208)
..|++.|++||+=++.+.++.
T Consensus 78 ~~l~~~GFkhV~~lT~D~~Wk 98 (142)
T PF10673_consen 78 EELKESGFKHVFYLTSDSEWK 98 (142)
T ss_pred HHHHhcCCcEEEEEecCcccc
Confidence 577899999999999876543
No 183
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=25.82 E-value=35 Score=23.00 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.1
Q ss_pred CCCcccccCcEEEecCCCC
Q 028512 58 FRWWDEVDQFLLLGAVPFP 76 (208)
Q Consensus 58 ~~~~~~I~~~l~lG~~~~~ 76 (208)
..|+-+|.+++|+|+....
T Consensus 18 t~wllEv~~GVyVg~~s~r 36 (87)
T TIGR01873 18 ALWLLEPRAGVYVGGVSAS 36 (87)
T ss_pred hhheeecCCCcEEcCCCHH
Confidence 3588899999999966543
No 184
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=25.57 E-value=2.2e+02 Score=19.33 Aligned_cols=39 Identities=8% Similarity=-0.077 Sum_probs=31.4
Q ss_pred HHhCCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHH
Q 028512 167 VEYKHMAPAAALEYVRCRRPRVLLAPSQWKVRNRFSYAL 205 (208)
Q Consensus 167 ~~~~~~s~~~A~~~vr~~Rp~~~~~~~~~~~L~~~~~~L 205 (208)
.+..|+++.++...+........++......|.+-...|
T Consensus 54 lr~~G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 92 (99)
T cd04765 54 LYEKGYTIEGAKQALKEDGAAAIREEEAEERLPSIRAEL 92 (99)
T ss_pred HHHCCCCHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence 345799999999999988888888888877777766554
No 185
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=25.31 E-value=3.7e+02 Score=23.79 Aligned_cols=70 Identities=14% Similarity=0.240 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhCC-CcEEEEcC----------------CCCChhHHHHHHHHHHhCCC-C----HHHHHHHHH-------
Q 028512 132 RAVDFIHSNSCAG-KTTYVHCK----------------AGRGRSTTIVLCYLVEYKHM-A----PAAALEYVR------- 182 (208)
Q Consensus 132 ~~~~~i~~~~~~g-~~VlVHC~----------------~G~~RS~~v~~ayL~~~~~~-s----~~~A~~~vr------- 182 (208)
.+.+.|+++.++| .-+-|||. .=+||-|++.++|++....- + +++-++..+
T Consensus 144 ~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 144 DLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLS 223 (431)
T ss_pred HHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeee
Confidence 4455566666655 35889994 12589999999999976544 3 344444444
Q ss_pred ---HhCCCCcCCHHHHHHHHHH
Q 028512 183 ---CRRPRVLLAPSQWKVRNRF 201 (208)
Q Consensus 183 ---~~Rp~~~~~~~~~~~L~~~ 201 (208)
..||+......-..|+.++
T Consensus 224 LGDglRPG~i~Da~D~aQi~El 245 (431)
T PRK13352 224 LGDGLRPGCIADATDRAQIQEL 245 (431)
T ss_pred ccCCcCCCccccCCcHHHHHHH
Confidence 4688888654444444443
No 186
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=25.21 E-value=1.4e+02 Score=20.69 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCChhHHH
Q 028512 145 KTTYVHCKAGRGRSTTI 161 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v 161 (208)
++|++-|.+|.|=|-++
T Consensus 4 kkIllvC~~G~sTSll~ 20 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLV 20 (106)
T ss_pred CEEEEECCCCccHHHHH
Confidence 57999999999855443
No 187
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=25.20 E-value=61 Score=21.91 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=13.5
Q ss_pred CcEEEEcCCCCChhHHHH
Q 028512 145 KTTYVHCKAGRGRSTTIV 162 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~ 162 (208)
.+|++-|.+|++=|-+++
T Consensus 3 ~kILvvCgsG~~TS~m~~ 20 (94)
T PRK10310 3 RKIIVACGGAVATSTMAA 20 (94)
T ss_pred CeEEEECCCchhHHHHHH
Confidence 369999999997554443
No 188
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=25.14 E-value=1.1e+02 Score=28.14 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=26.3
Q ss_pred cccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChh
Q 028512 105 LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRS 158 (208)
Q Consensus 105 ~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS 158 (208)
.++..|+.++. +++.+ ....+.+++ .+....++|++|||..=+|+-
T Consensus 202 ~~~a~G~~~~~-v~DG~----D~~~l~~a~---~~a~~~~gP~~i~~~T~kG~G 247 (581)
T PRK12315 202 LFKAMGLDYRY-VEDGN----DIESLIEAF---KEVKDIDHPIVLHIHTLKGKG 247 (581)
T ss_pred HHHhcCCeEEE-eeCCC----CHHHHHHHH---HHHHhCCCCEEEEEEeecCCC
Confidence 46677888876 22222 133344443 334445689999998655543
No 189
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=24.67 E-value=4.6e+02 Score=22.63 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHH--HHHHHHhCCC-------CHHHHHHHHHHhCCCCcCCHHHH-
Q 028512 126 SFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIV--LCYLVEYKHM-------APAAALEYVRCRRPRVLLAPSQW- 195 (208)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~--~ayL~~~~~~-------s~~~A~~~vr~~Rp~~~~~~~~~- 195 (208)
+..++..+..|+-...+-|-.|+.. |.||-+..+ .|-++..-|+ -.++|++..++.-+...|+..+.
T Consensus 103 L~~nI~~AYrFL~~~yepGD~Iy~F---GFSRGAf~aRVlagmir~vGlls~~~~~~~d~Aw~~y~~r~~~~dp~~~~~t 179 (423)
T COG3673 103 LVQNIREAYRFLIFNYEPGDEIYAF---GFSRGAFSARVLAGMIRHVGLLSRKHAARIDEAWAHYRQRLSGLDPEGQKVT 179 (423)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEe---eccchhHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhcCCCChhhhhhh
Confidence 4577889999999998888899975 999976644 2223333333 37789999988888888765544
Q ss_pred HHHHHHHHHH
Q 028512 196 KVRNRFSYAL 205 (208)
Q Consensus 196 ~~L~~~~~~L 205 (208)
+.+.+|.+++
T Consensus 180 r~rae~f~~~ 189 (423)
T COG3673 180 RFRAEYFRNI 189 (423)
T ss_pred HhhhHHHHhh
Confidence 3444555544
No 190
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=24.63 E-value=1.5e+02 Score=25.31 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=12.9
Q ss_pred hhCCCcEEEEcCCCCCh
Q 028512 141 SCAGKTTYVHCKAGRGR 157 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~~R 157 (208)
+..|..||.||.+|.-.
T Consensus 144 I~~g~~ILThc~sg~la 160 (344)
T PRK05720 144 IRKGQGILTHCNAGWLA 160 (344)
T ss_pred ccCCCEEEEecCCCcce
Confidence 44577899999998643
No 191
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=24.23 E-value=1.2e+02 Score=22.69 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=22.5
Q ss_pred EcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHH
Q 028512 150 HCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRC 183 (208)
Q Consensus 150 HC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~ 183 (208)
+|..|.++.-+....--....+++.++|+..++.
T Consensus 128 ~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~ 161 (182)
T cd01906 128 ATAIGSGSQYALGILEKLYKPDMTLEEAIELALK 161 (182)
T ss_pred EEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 5667766654444444444567899999988764
No 192
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=24.22 E-value=2.9e+02 Score=20.14 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=33.3
Q ss_pred CcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhC--CCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhC
Q 028512 110 GIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCA--GKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRR 185 (208)
Q Consensus 110 gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~--g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~R 185 (208)
+..++++.-......-.+..+....+.+.+.+++ ++-|++=| +=||+.+.| ++.+++++...|
T Consensus 40 ~~~viWlT~~~~~~~I~Pt~L~~l~~~i~~fl~~~~~~vViiD~-----------lEYL~l~Ng--F~~v~KFL~~Lk 104 (136)
T PF05763_consen 40 NTPVIWLTKVEGENAISPTNLHKLLDTIVRFLKENGNGVVIIDG-----------LEYLILENG--FESVLKFLASLK 104 (136)
T ss_pred CCcEEEEeccCCCCccCchhhHHHHHHHHHHHHhCCCcEEEEec-----------HHHHHHHcC--HHHHHHHHHHhH
Confidence 5556666553321121222333333333333333 56777776 348998777 666666666555
No 193
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=24.20 E-value=74 Score=23.32 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.5
Q ss_pred CcEEEEcCCCCChhHHHHHHH
Q 028512 145 KTTYVHCKAGRGRSTTIVLCY 165 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~~ay 165 (208)
.+||+=|.+...||++.-+..
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~ 23 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLL 23 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHH
Confidence 479999999999998766544
No 194
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=24.00 E-value=88 Score=25.29 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCCChhHHHH--HHHHHHhCCCCHH
Q 028512 144 GKTTYVHCKAGRGRSTTIV--LCYLVEYKHMAPA 175 (208)
Q Consensus 144 g~~VlVHC~~G~~RS~~v~--~ayL~~~~~~s~~ 175 (208)
+++++|-..+|-|-|.+++ ++||+...+.+++
T Consensus 13 ~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~ 46 (315)
T PF00580_consen 13 EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPE 46 (315)
T ss_dssp SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGG
T ss_pred CCCEEEEeCCCCCchHHHHHHHHHhhccccCChH
Confidence 5899999999999999887 4778876655543
No 195
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=23.55 E-value=1.3e+02 Score=19.43 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=17.0
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+++|+++|..|. |+... +..|. ..|.
T Consensus 49 ~~~~~vvl~c~~g~-~a~~~-a~~L~-~~G~ 76 (90)
T cd01524 49 PKDKEIIVYCAVGL-RGYIA-ARILT-QNGF 76 (90)
T ss_pred CCCCcEEEEcCCCh-hHHHH-HHHHH-HCCC
Confidence 45689999999873 44433 33343 3443
No 196
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=23.55 E-value=2.4e+02 Score=20.54 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCCChhHHHHHHHHHH
Q 028512 143 AGKTTYVHCKAGRGRSTTIVLCYLVE 168 (208)
Q Consensus 143 ~g~~VlVHC~~G~~RS~~v~~ayL~~ 168 (208)
.+.+|+|+|..| ..+..++..|..
T Consensus 48 ~~~~vVv~c~~g--~~a~~aa~~L~~ 71 (145)
T cd01535 48 AAERYVLTCGSS--LLARFAAADLAA 71 (145)
T ss_pred CCCCEEEEeCCC--hHHHHHHHHHHH
Confidence 458999999986 344445555553
No 197
>PRK10126 tyrosine phosphatase; Provisional
Probab=23.51 E-value=70 Score=23.44 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q 028512 145 KTTYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~~a 164 (208)
.+||+=|.+...||++.-+.
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~ 22 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERL 22 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHH
Confidence 47999999999999987654
No 198
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=23.45 E-value=42 Score=23.16 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=15.1
Q ss_pred CCCcccccCcEEEecCCCC
Q 028512 58 FRWWDEVDQFLLLGAVPFP 76 (208)
Q Consensus 58 ~~~~~~I~~~l~lG~~~~~ 76 (208)
..|+-+|.+++|+|+....
T Consensus 20 t~wllEv~~GVyVg~~S~r 38 (97)
T PRK11558 20 AVWLLEVRAGVYVGDVSRR 38 (97)
T ss_pred hhheEecCCCcEEcCCCHH
Confidence 3588899999999975543
No 199
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.42 E-value=1e+02 Score=24.92 Aligned_cols=30 Identities=20% Similarity=0.446 Sum_probs=19.2
Q ss_pred CcHHHHHHHHHHHHHHhhCCCcEEEEcCCCC
Q 028512 125 PSFVDIRRAVDFIHSNSCAGKTTYVHCKAGR 155 (208)
Q Consensus 125 ~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~ 155 (208)
.+.+.++.+++++.+... ..-++.||..++
T Consensus 123 stl~EI~~Av~~~~~~~~-~~l~llHC~s~Y 152 (241)
T PF03102_consen 123 STLEEIERAVEVLREAGN-EDLVLLHCVSSY 152 (241)
T ss_dssp --HHHHHHHHHHHHHHCT---EEEEEE-SSS
T ss_pred CCHHHHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence 356788899998854433 367999999875
No 200
>cd01701 PolY_Rev1 DNA polymerase Rev1. Rev1 is a translesion synthesis (TLS) polymerase found in eukaryotes. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Rev1 has both structural and enzymatic roles. Structurally, it is believed to interact with other nonclassical polymerases and replication machinery to act as a scaffold. Enzymatically, it catalyzes the specific insertion of dCMP opposite abasic sites. Rev1 interacts with the Rev7 subunit of the B-family TLS polymerase Pol zeta (Rev3/Rev7). Rev1 is known to actively promote the introduction of mutations, potentially making it a significant target for cancer treatment.
Probab=23.31 E-value=51 Score=28.69 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCc
Q 028512 130 IRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVL 189 (208)
Q Consensus 130 ~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~ 189 (208)
|-..++...+..-.|+||.| +..+.+|+..+++.|-.+..|+..-..+...+...|..+
T Consensus 57 FyasvE~~~~p~L~~kPv~V-~~~~~~~~~V~a~sy~AR~~GV~~gM~~~~A~~lcP~l~ 115 (404)
T cd01701 57 FFVSVSIRNRPDLKGKPVAV-CHGKGPNSEIASCNYEARSYGIKNGMWVGQAKKLCPQLV 115 (404)
T ss_pred HHHHHHhhhCccccCCCEEE-ecCCCCCeEEEecCHHHHhcCCCCCCcHHHHHHHCCCcE
Confidence 44455555555556899988 444434666677888887765433333334444456544
No 201
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=23.31 E-value=52 Score=26.87 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=44.4
Q ss_pred cccCcEEEecCCCC-CChhHHHhCCCcEEEEecCCCccCCC---CccccccCcEEEEEeCCCCCC-CC---cHHHHHHHH
Q 028512 63 EVDQFLLLGAVPFP-KDVPRLKQLGVGGVITLNEPYETLVP---SSLYHAHGIDHLVIPTRDYLF-AP---SFVDIRRAV 134 (208)
Q Consensus 63 ~I~~~l~lG~~~~~-~~~~~L~~~gI~~Vi~l~~~~e~~~~---~~~~~~~gi~~~~~p~~D~~~-~~---~~~~~~~~~ 134 (208)
++.+ .-+|+.-.+ .-..+|++++|+.|||-+-++-.... ...++..||.|+.+--+.... .+ ....+.+++
T Consensus 43 ~~~~-~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~ 121 (257)
T COG2099 43 QIGP-VRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAA 121 (257)
T ss_pred ccCC-eeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHH
Confidence 3444 344444444 45577889999999999976533111 235567899998886543321 11 234455655
Q ss_pred HHHHH
Q 028512 135 DFIHS 139 (208)
Q Consensus 135 ~~i~~ 139 (208)
..+.+
T Consensus 122 ~~~~~ 126 (257)
T COG2099 122 EAAKQ 126 (257)
T ss_pred HHHhc
Confidence 55443
No 202
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=23.22 E-value=80 Score=19.71 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=13.5
Q ss_pred cEEEEcCCCCChhHHHHH
Q 028512 146 TTYVHCKAGRGRSTTIVL 163 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v~~ 163 (208)
++++-|..|.+-|.++..
T Consensus 1 ~il~vc~~G~~~s~~l~~ 18 (84)
T cd00133 1 KILVVCGSGIGSSSMLAE 18 (84)
T ss_pred CEEEECCCcHhHHHHHHH
Confidence 478999999876655544
No 203
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=23.01 E-value=71 Score=23.80 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=37.8
Q ss_pred CcEEEecCCCCCChhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeC
Q 028512 66 QFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPT 118 (208)
Q Consensus 66 ~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~ 118 (208)
-.||+.-.|-..=...+...||+.|+-.............++..||+..+++.
T Consensus 88 ~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~~~~~~l~~~gi~v~~~~~ 140 (151)
T TIGR02571 88 AEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHPYAIELFEQAGVELKKVPF 140 (151)
T ss_pred cEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcHHHHHHHHHCCCEEEEeCc
Confidence 35888888888777888889999998764321111123477889999998874
No 204
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=22.59 E-value=4.2e+02 Score=22.07 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEcCCCCC----hhHHHHHHHHHHhCCC-CHHHHHHHHHHhCCCCc----CCHHHHHHH
Q 028512 128 VDIRRAVDFIHSNSCAGKTTYVHCKAGRG----RSTTIVLCYLVEYKHM-APAAALEYVRCRRPRVL----LAPSQWKVR 198 (208)
Q Consensus 128 ~~~~~~~~~i~~~~~~g~~VlVHC~~G~~----RS~~v~~ayL~~~~~~-s~~~A~~~vr~~Rp~~~----~~~~~~~~L 198 (208)
+..+.....+.+.+..||+++.|+-.+.. +.+.....|..--.-+ +..+....+....-.+. ..+.....|
T Consensus 153 ~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl 232 (283)
T COG2230 153 ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTL 232 (283)
T ss_pred ccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHH
Confidence 33556677778888889999999999988 6666666665532223 34555555444432221 234444555
Q ss_pred HHHHHHH
Q 028512 199 NRFSYAL 205 (208)
Q Consensus 199 ~~~~~~L 205 (208)
..|...+
T Consensus 233 ~~W~~~f 239 (283)
T COG2230 233 RLWRERF 239 (283)
T ss_pred HHHHHHH
Confidence 5555444
No 205
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=22.53 E-value=4.6e+02 Score=21.93 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=56.6
Q ss_pred hHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeC-CCCCCCCc--H-------HHHHHHHHHHHHHhhCCCcEEE
Q 028512 80 PRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPT-RDYLFAPS--F-------VDIRRAVDFIHSNSCAGKTTYV 149 (208)
Q Consensus 80 ~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~-~D~~~~~~--~-------~~~~~~~~~i~~~~~~g~~VlV 149 (208)
+.|++++|+.+|-+........-....+..++..+.+|- -|++.+.+ . +...++++-+........+|+|
T Consensus 85 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~i~~ta~s~~rv~i 164 (301)
T TIGR02482 85 ENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDKIRDTATSHERAFV 164 (301)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHHHHHHhhcCCCEEE
Confidence 468899999999998654321112223336899999996 33322211 1 2222333333322223457888
Q ss_pred EcCCCCChhHHHHHHHHHHh--------CCCCHHHHHHHHHHh
Q 028512 150 HCKAGRGRSTTIVLCYLVEY--------KHMAPAAALEYVRCR 184 (208)
Q Consensus 150 HC~~G~~RS~~v~~ayL~~~--------~~~s~~~A~~~vr~~ 184 (208)
-=..|.+-.-..+.+-|... ...++++-++.++++
T Consensus 165 vEvMGR~~G~lAl~~~la~gad~iliPE~~~~~~~l~~~i~~r 207 (301)
T TIGR02482 165 IEVMGRHAGDLALYSGIATGAEIIIIPEFDYDIDELIQRLKEQ 207 (301)
T ss_pred EEeCCCCHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 77788643333333333321 246777777777654
No 206
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=22.21 E-value=2e+02 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=18.2
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHHHhCCC
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLVEYKHM 172 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~ 172 (208)
..+.+|+|+|..|. ||..+ +..| ...|.
T Consensus 55 ~~~~~IvvyC~~G~-rs~~a-a~~L-~~~G~ 82 (376)
T PRK08762 55 DRDREIVLICASGT-RSAHA-AATL-RELGY 82 (376)
T ss_pred CCCCeEEEEcCCCc-HHHHH-HHHH-HHcCC
Confidence 45789999999884 77543 3333 34454
No 207
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=22.16 E-value=2.9e+02 Score=22.94 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHH---HHHHHhCCCCHH
Q 028512 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVL---CYLVEYKHMAPA 175 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~---ayL~~~~~~s~~ 175 (208)
.+.+.++++.+.+.+.+|++|++- |.|=||.+++ .-+....|.++.
T Consensus 40 l~~I~~av~~~~~~l~~gGrl~~~---G~G~Sg~l~~~DA~e~~~t~g~~~~ 88 (291)
T TIGR00274 40 LPDIAAAVEQIVQAFQQGGRLIYI---GAGTSGRLGVLDASECPPTFGVSPE 88 (291)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEE---CCcHHHHHHHHHHHHhhhhcCCCHH
Confidence 355677777777888888877664 4445665532 223444565444
No 208
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=22.08 E-value=98 Score=22.07 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=14.9
Q ss_pred EEEEcCCCCChhHHHHHH
Q 028512 147 TYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 147 VlVHC~~G~~RS~~v~~a 164 (208)
||+=|.++..||++.-+.
T Consensus 1 ILFvC~~N~cRS~mAEai 18 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAI 18 (138)
T ss_dssp EEEEESSSSSHHHHHHHH
T ss_pred CEEEeCCCcchHHHHHHH
Confidence 688899999999876543
No 209
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=22.03 E-value=1.1e+02 Score=25.51 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=22.4
Q ss_pred HHhhCCCcEEEEcCCCCChhHHHHHHHHH
Q 028512 139 SNSCAGKTTYVHCKAGRGRSTTIVLCYLV 167 (208)
Q Consensus 139 ~~~~~g~~VlVHC~~G~~RS~~v~~ayL~ 167 (208)
+.+..++||.+-|..|++-+..++++++.
T Consensus 231 ~~l~~~~p~~~sC~~Gisa~~i~~al~r~ 259 (286)
T KOG1529|consen 231 KGLKLSKPVIVSCGTGISASIIALALERS 259 (286)
T ss_pred cCcccCCCEEEeeccchhHHHHHHHHHhc
Confidence 44455799999999999877777776665
No 210
>PRK10812 putative DNAse; Provisional
Probab=22.00 E-value=1.6e+02 Score=23.94 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcCCCCC
Q 028512 129 DIRRAVDFIHSNSCAGKTTYVHCKAGRG 156 (208)
Q Consensus 129 ~~~~~~~~i~~~~~~g~~VlVHC~~G~~ 156 (208)
+..-+-.++.-+.+.+.||.|||..+..
T Consensus 109 Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~ 136 (265)
T PRK10812 109 QQESFRHHIQIGRELNKPVIVHTRDARA 136 (265)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeeCchH
Confidence 3444444455555567888888876543
No 211
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=21.99 E-value=1.3e+02 Score=24.86 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=33.8
Q ss_pred HHHhCCCcEEEEecCCCccCCC---------CccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHH----Hhh-CCCc
Q 028512 81 RLKQLGVGGVITLNEPYETLVP---------SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHS----NSC-AGKT 146 (208)
Q Consensus 81 ~L~~~gI~~Vi~l~~~~e~~~~---------~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~----~~~-~g~~ 146 (208)
..+++|.++.|...-+.....+ ...++..|++|.....+|-..... ...+-+||.+ ++. .|+.
T Consensus 125 ~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~g---v~gaqqfIlE~vp~~i~kYGkd 201 (275)
T PF12683_consen 125 AAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDLGIKFVEVTAPDPTSDVG---VAGAQQFILEDVPKWIKKYGKD 201 (275)
T ss_dssp HHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT--EEEEEE---SSTCH---HHHHHHHHHHHHHHHHHHH-S-
T ss_pred HHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCC---cHHHHHHHHHHHHHHHHHhCCc
Confidence 4467999999998654332111 245678899999996655321111 2222223322 222 2889
Q ss_pred EEEEcCCC
Q 028512 147 TYVHCKAG 154 (208)
Q Consensus 147 VlVHC~~G 154 (208)
+.+.|...
T Consensus 202 taff~TN~ 209 (275)
T PF12683_consen 202 TAFFCTND 209 (275)
T ss_dssp -EEEESSH
T ss_pred eeEEecCc
Confidence 99999765
No 212
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.95 E-value=2.9e+02 Score=26.04 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHH
Q 028512 129 DIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVE 168 (208)
Q Consensus 129 ~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~ 168 (208)
.=.+.++.+.+.++.|+..++.--.|.|.|.++.++.|-+
T Consensus 14 ~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~ 53 (705)
T TIGR00604 14 EQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAY 53 (705)
T ss_pred HHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHH
Confidence 3445555666777788999999999999998777666653
No 213
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=21.88 E-value=76 Score=26.42 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=14.3
Q ss_pred hhCCCcEEEEcCCCCChhHH
Q 028512 141 SCAGKTTYVHCKAGRGRSTT 160 (208)
Q Consensus 141 ~~~g~~VlVHC~~G~~RS~~ 160 (208)
+..+++|.++|..|..-|.+
T Consensus 231 i~~~~~vI~yCgsG~~As~~ 250 (285)
T COG2897 231 IDPDKEVIVYCGSGVRASVT 250 (285)
T ss_pred CCCCCCEEEEcCCchHHHHH
Confidence 45578999999888643333
No 214
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=21.82 E-value=1.1e+02 Score=24.85 Aligned_cols=65 Identities=18% Similarity=0.184 Sum_probs=38.7
Q ss_pred CCCChhHHHhCCCcEEEEecCCCccCCC--CccccccCcEEEEEeCCCCCCC-CcHHHHHHHHHHHHHH
Q 028512 75 FPKDVPRLKQLGVGGVITLNEPYETLVP--SSLYHAHGIDHLVIPTRDYLFA-PSFVDIRRAVDFIHSN 140 (208)
Q Consensus 75 ~~~~~~~L~~~gI~~Vi~l~~~~e~~~~--~~~~~~~gi~~~~~p~~D~~~~-~~~~~~~~~~~~i~~~ 140 (208)
...+...+++++|+.||+=.+... ... -......|+..+-+-=+..... .....++++.+++.+.
T Consensus 179 ~e~n~aL~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI~RP~~~~~~~~~~~~~e~~~~l~~~ 246 (248)
T PRK08057 179 LELERALLRQHRIDVVVTKNSGGA-GTEAKLEAARELGIPVVMIARPALPYADREFEDVAELVAWLRHL 246 (248)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEEeCCCCCCCCcccCCHHHHHHHHHHh
Confidence 334567788999999997765543 111 1234466887776655443212 3345667777776654
No 215
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=21.66 E-value=2.6e+02 Score=26.33 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=61.0
Q ss_pred cccceeecchHHHHhhhcceEEecchhhHHHHHhhhhccCCCcccccCcEEEecCCCCCChhHHHhCCCcEEEEecCCCc
Q 028512 19 RTTQIVKADAKRALVGAGARILFYPTLLYNVFRNKIQAEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNEPYE 98 (208)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~l~~P~l~~~~~~~~~~~~~~~~~~I~~~l~lG~~~~~~~~~~L~~~gI~~Vi~l~~~~e 98 (208)
|...-...++..++-.+..++..||..+-. + ...-+++.+....-.+.|++.||+.|--.- -++
T Consensus 35 W~~~~~~~~p~~~~~~a~~W~~~~P~s~i~--------------~-~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P-~~~ 98 (688)
T TIGR02455 35 WQQPYAEAQPRDASAIASVWFTAYPAAIIA--------------P-EGCSVLEALADDALWKALSEIGVQGIHNGP-IKL 98 (688)
T ss_pred hcCCCCCCChHHHHhhcCeeEEecchhhcC--------------C-CCCcHHHHhcChHHHHHHHHhCCCEEEeCc-cee
Confidence 333345555555555555555556744221 0 112356777777778899999999876332 111
Q ss_pred c---C-CCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEE-----EcCCCCC
Q 028512 99 T---L-VPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYV-----HCKAGRG 156 (208)
Q Consensus 99 ~---~-~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlV-----HC~~G~~ 156 (208)
. . ......... .+.+.|....|..-..+++..++..+.+.|-+|.+ |+..|..
T Consensus 99 SGgi~g~~~tP~~D~-----gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghd 160 (688)
T TIGR02455 99 SGGIRGREFTPSIDG-----NFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGAD 160 (688)
T ss_pred cccccccCCCCCCCC-----CCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcc
Confidence 1 0 000000011 12233333344444556666677777777766554 7777765
No 216
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=21.65 E-value=1.3e+02 Score=29.33 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=36.9
Q ss_pred ccccccCcEEEEEeCCC------C---CCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCC
Q 028512 104 SLYHAHGIDHLVIPTRD------Y---LFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAG 154 (208)
Q Consensus 104 ~~~~~~gi~~~~~p~~D------~---~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G 154 (208)
++++-.++.++.+|..- . -.....+.+..+++.|.+....|.||||-|..=
T Consensus 400 Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv 459 (908)
T PRK13107 400 EFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSI 459 (908)
T ss_pred HHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcH
Confidence 35566788999999632 1 112234678888888988888999999999653
No 217
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=21.49 E-value=78 Score=21.43 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=10.8
Q ss_pred cEEEEcCCCCChh
Q 028512 146 TTYVHCKAGRGRS 158 (208)
Q Consensus 146 ~VlVHC~~G~~RS 158 (208)
+||+-|.+|++=|
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 4899999999655
No 218
>PLN02790 transketolase
Probab=21.39 E-value=1.3e+02 Score=28.08 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=28.1
Q ss_pred cccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhh-CCCcEEEEcCCCCChh
Q 028512 105 LYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSC-AGKTTYVHCKAGRGRS 158 (208)
Q Consensus 105 ~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~-~g~~VlVHC~~G~~RS 158 (208)
.++..|++++.+. + + ....+.+.++++ .... .++|++|||..=+|+.
T Consensus 195 ~f~a~G~~~~~vd--g-g-~hd~~~l~~a~~---~a~~~~~~P~lI~~~T~kG~G 242 (654)
T PLN02790 195 RYEALGWHTIWVK--N-G-NTDYDEIRAAIK---EAKAVTDKPTLIKVTTTIGYG 242 (654)
T ss_pred HHHHcCCeEEEEC--C-C-CCCHHHHHHHHH---HHHhcCCCeEEEEEEEeecCC
Confidence 4667788888752 2 1 112344444444 3333 4789999999765554
No 219
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=21.38 E-value=1.3e+02 Score=25.57 Aligned_cols=41 Identities=15% Similarity=0.309 Sum_probs=27.0
Q ss_pred EEEcCCCCChhHHHHHHHHHHh-----CCCCHHHHHHHHHHhCCCCc
Q 028512 148 YVHCKAGRGRSTTIVLCYLVEY-----KHMAPAAALEYVRCRRPRVL 189 (208)
Q Consensus 148 lVHC~~G~~RS~~v~~ayL~~~-----~~~s~~~A~~~vr~~Rp~~~ 189 (208)
+++.-+|.| ||.++++.|..- ..++.++++++.+...+.+.
T Consensus 43 ~FDliaGTS-tGgiiA~~la~~~~~~~p~~~~~e~~~~y~~~~~~iF 88 (349)
T cd07214 43 YFDVIAGTS-TGGLITAMLTAPNENKRPLFAAKDIVQFYLENGPKIF 88 (349)
T ss_pred hCCEEeeCC-HHHHHHHHHhcCCCCCCCccCHHHHHHHHHHhhHHhc
Confidence 799999988 445555544431 13688999888776555444
No 220
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=21.28 E-value=5.1e+02 Score=22.89 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=62.8
Q ss_pred HhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHH------------HHHHHHHHHHHhhCC-CcEEE
Q 028512 83 KQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVD------------IRRAVDFIHSNSCAG-KTTYV 149 (208)
Q Consensus 83 ~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~------------~~~~~~~i~~~~~~g-~~VlV 149 (208)
.++|..+|-+|+...... .++..-++...+|+ ++.|..+. -+.+.+.|+++.++| .-+-|
T Consensus 87 ~~~GADtiMDLStGgdl~----~iR~~il~~s~vpv---GTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfmTi 159 (423)
T TIGR00190 87 IKYGADTVMDLSTGGDLD----EIRKAILDAVPVPV---GTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFMTI 159 (423)
T ss_pred HHcCCCeEeeccCCCCHH----HHHHHHHHcCCCCc---cCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEE
Confidence 469999999998764321 11111111222222 11222222 234455566666655 35888
Q ss_pred EcC-----------C-----CCChhHHHHHHHHHHhCCC-C----HHHHHHHHH----------HhCCCCcCCHHHHHHH
Q 028512 150 HCK-----------A-----GRGRSTTIVLCYLVEYKHM-A----PAAALEYVR----------CRRPRVLLAPSQWKVR 198 (208)
Q Consensus 150 HC~-----------~-----G~~RS~~v~~ayL~~~~~~-s----~~~A~~~vr----------~~Rp~~~~~~~~~~~L 198 (208)
||. . =+||-|++.++|++....- + +++-++..+ ..||+.+....-..|+
T Consensus 160 H~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi 239 (423)
T TIGR00190 160 HAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTLSLGDGLRPGCIADATDRAQI 239 (423)
T ss_pred ccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHH
Confidence 995 1 2589999999999976544 3 334444444 4688888755544444
Q ss_pred HHH
Q 028512 199 NRF 201 (208)
Q Consensus 199 ~~~ 201 (208)
.++
T Consensus 240 ~El 242 (423)
T TIGR00190 240 SEL 242 (423)
T ss_pred HHH
Confidence 443
No 221
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=21.23 E-value=4.4e+02 Score=21.17 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=35.3
Q ss_pred cCcEEEEEeCCCCCCCC-cHHHHHHHHH----HHHHHhhCCCcEEEEcCCCCC-hhHHHHHHHHHHhCCCCHHHHHH
Q 028512 109 HGIDHLVIPTRDYLFAP-SFVDIRRAVD----FIHSNSCAGKTTYVHCKAGRG-RSTTIVLCYLVEYKHMAPAAALE 179 (208)
Q Consensus 109 ~gi~~~~~p~~D~~~~~-~~~~~~~~~~----~i~~~~~~g~~VlVHC~~G~~-RS~~v~~ayL~~~~~~s~~~A~~ 179 (208)
....|-+++........ ..+.+..++- -|...+..|++|+| +++|-| |+ ..+...|+|-++...
T Consensus 134 ~d~ry~~~~~~~~p~~EsLkdt~~Rv~Pyw~~~I~p~l~~Gk~VlI-~AHGNSlRa------LiK~L~~iSd~dI~~ 203 (230)
T COG0588 134 RDRRYAHLDIGGLPLTESLKDTVERVLPYWEDDIAPNLKSGKNVLI-VAHGNSLRA------LIKYLEGISDEDILD 203 (230)
T ss_pred cccccccccccCCCccchHHHHHHHhhHHHHHHhhHHHhCCCeEEE-EecchhHHH------HHHHHhCCCHHHhhh
Confidence 34556666654432222 2233444443 34445667888888 577765 33 344456888777543
No 222
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=21.17 E-value=42 Score=27.04 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=36.2
Q ss_pred CCChhHHHhCCCcEEEEecCCCccCCC---------------CccccccCcEE-EEEeCCCCCCCCcHHHHHHHHHHHHH
Q 028512 76 PKDVPRLKQLGVGGVITLNEPYETLVP---------------SSLYHAHGIDH-LVIPTRDYLFAPSFVDIRRAVDFIHS 139 (208)
Q Consensus 76 ~~~~~~L~~~gI~~Vi~l~~~~e~~~~---------------~~~~~~~gi~~-~~~p~~D~~~~~~~~~~~~~~~~i~~ 139 (208)
-.|++.++..||..||.|.-.+..... ....+..|++. ..+.+.....+| .+..++..+..
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP~---e~~~~l~~L~~ 90 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIPP---ELEEVLEELEE 90 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEeccCCCCCCc---hHHHHHHHHHh
Confidence 356778888999999999754321111 11123456643 445554443233 26666666666
Q ss_pred HhhC
Q 028512 140 NSCA 143 (208)
Q Consensus 140 ~~~~ 143 (208)
.+.+
T Consensus 91 ~l~~ 94 (254)
T COG1099 91 LLSN 94 (254)
T ss_pred hccc
Confidence 6653
No 223
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=21.08 E-value=1.2e+02 Score=28.22 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=27.9
Q ss_pred CccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChh
Q 028512 103 SSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRS 158 (208)
Q Consensus 103 ~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS 158 (208)
...|++.|++|+. |++.+ ..+.+.++++..... .++|++|||..=+|+-
T Consensus 239 ~~~f~a~G~~~~~-~vdGh----d~~~l~~al~~ak~~--~~~P~~I~~~T~kGkG 287 (641)
T PRK12571 239 GTLFEELGFTYVG-PIDGH----DMEALLSVLRAARAR--ADGPVLVHVVTEKGRG 287 (641)
T ss_pred hhHHHHcCCEEEC-ccCCC----CHHHHHHHHHHHHhC--CCCCEEEEEEecCccC
Confidence 3567778888872 23222 244455554433321 4689999998544443
No 224
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=21.03 E-value=1.6e+02 Score=18.42 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=15.7
Q ss_pred hCCCcEEEEcCCCCChhHHHHHHHHH
Q 028512 142 CAGKTTYVHCKAGRGRSTTIVLCYLV 167 (208)
Q Consensus 142 ~~g~~VlVHC~~G~~RS~~v~~ayL~ 167 (208)
..+.+|+|+|..|. |+ ..++.+|.
T Consensus 48 ~~~~~vv~~c~~~~-~a-~~~~~~l~ 71 (89)
T cd00158 48 DKDKPIVVYCRSGN-RS-ARAAKLLR 71 (89)
T ss_pred CCCCeEEEEeCCCc-hH-HHHHHHHH
Confidence 45689999999973 44 33444444
No 225
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=21.00 E-value=5.2e+02 Score=21.91 Aligned_cols=80 Identities=20% Similarity=0.121 Sum_probs=49.3
Q ss_pred ChhHHHhCCCcEEEEecCCCccCCCC------ccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEc
Q 028512 78 DVPRLKQLGVGGVITLNEPYETLVPS------SLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHC 151 (208)
Q Consensus 78 ~~~~L~~~gI~~Vi~l~~~~e~~~~~------~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC 151 (208)
.++..++.|....+++...... .+. +...+.|...+.+. |....-.+..+.+.+..+.+.+..+-++-+||
T Consensus 119 ~i~~ak~~G~~v~~~l~~s~~~-~~e~l~~~a~~~~~~Ga~~i~i~--DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 195 (333)
T TIGR03217 119 HIGMARELGMDTVGFLMMSHMT-PPEKLAEQAKLMESYGADCVYIV--DSAGAMLPDDVRDRVRALKAVLKPETQVGFHA 195 (333)
T ss_pred HHHHHHHcCCeEEEEEEcccCC-CHHHHHHHHHHHHhcCCCEEEEc--cCCCCCCHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 3456678898888888654321 111 12234566655444 44445666778888888877665446899999
Q ss_pred CCCCChhHH
Q 028512 152 KAGRGRSTT 160 (208)
Q Consensus 152 ~~G~~RS~~ 160 (208)
..-.|=+.+
T Consensus 196 HnnlGla~A 204 (333)
T TIGR03217 196 HHNLSLAVA 204 (333)
T ss_pred CCCCchHHH
Confidence 876654433
No 226
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=20.90 E-value=1.1e+02 Score=26.10 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=14.6
Q ss_pred HHHHHHhhCCCcEEEEcCCCC
Q 028512 135 DFIHSNSCAGKTTYVHCKAGR 155 (208)
Q Consensus 135 ~~i~~~~~~g~~VlVHC~~G~ 155 (208)
++-.+.+..|..||.||.+|-
T Consensus 128 ~~g~~~I~~g~~ILThcnsg~ 148 (329)
T PRK06371 128 EYGNELIKNGARILTHCNAGA 148 (329)
T ss_pred HHHHHHcCCCCEEEEeCCCCc
Confidence 333344556778999999885
No 227
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=20.74 E-value=2.5e+02 Score=21.95 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCC
Q 028512 130 IRRAVDFIHSNSCAGKTTYVHCKAGRG 156 (208)
Q Consensus 130 ~~~~~~~i~~~~~~g~~VlVHC~~G~~ 156 (208)
+..+.+.+..+...|-++.+||..|-+
T Consensus 182 i~~~~~i~~~a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 182 LTESRRAADLAEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHHHHHHHHHHHcCCEEeecCCCCCH
Confidence 445555566666678899999986643
No 228
>COG1513 CynS Cyanate lyase [Inorganic ion transport and metabolism]
Probab=20.74 E-value=1.5e+02 Score=21.67 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=20.8
Q ss_pred cCCCCChhHHHHHHHHHHhCCCCHHHH
Q 028512 151 CKAGRGRSTTIVLCYLVEYKHMAPAAA 177 (208)
Q Consensus 151 C~~G~~RS~~v~~ayL~~~~~~s~~~A 177 (208)
-..|.||+.+++++.+......+.++|
T Consensus 27 l~~~lG~~ev~vaa~~ygqa~~~~~ea 53 (151)
T COG1513 27 LADGLGLAEVFVAAALYGQAALPADEA 53 (151)
T ss_pred HHhhcCccHHHHHHHHHhhccCCHHHH
Confidence 357889999999998887666666655
No 229
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=20.71 E-value=1e+02 Score=29.70 Aligned_cols=53 Identities=25% Similarity=0.259 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCc
Q 028512 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKHMAPAAALEYVRCRRPRVL 189 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~~s~~~A~~~vr~~Rp~~~ 189 (208)
.+.-.++...|..++-+.||=||-|--|.- ++........|++.||.+|..+.
T Consensus 416 eD~~qe~~~li~~AL~~PGPDlVICDEGHr----------IKN~~A~iS~aLk~IrtrRRiVL 468 (1387)
T KOG1016|consen 416 EDQRQEAYSLIRSALLEPGPDLVICDEGHR----------IKNITAEISMALKAIRTRRRIVL 468 (1387)
T ss_pred hhhHHHHHHHHHHHhcCCCCCeEEecCCce----------eccchHHHHHHHHHhhhceeEEE
Confidence 455677888899999999999999999962 33333355667788887776443
No 230
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=20.68 E-value=1.4e+02 Score=24.25 Aligned_cols=44 Identities=25% Similarity=0.179 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHH---HHHHHhCCCC
Q 028512 127 FVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVL---CYLVEYKHMA 173 (208)
Q Consensus 127 ~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~---ayL~~~~~~s 173 (208)
.+.+.++++.+.+.+.+|++|++ | |.|-||.++. ..+....|.+
T Consensus 32 l~~I~~av~~~~~~l~~ggrl~~-~--GaGtSg~la~~da~e~~~tfg~~ 78 (257)
T cd05007 32 LPQIARAVDAAAERLRAGGRLIY-V--GAGTSGRLGVLDASELPPTFGTP 78 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEE-E--cCcHHHHHHHHHHHhccccccCC
Confidence 35677888888888888887655 3 5556766664 3444344553
No 231
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.66 E-value=2e+02 Score=24.40 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHHHhhCC-CcEEEEcCCCC
Q 028512 126 SFVDIRRAVDFIHSNSCAG-KTTYVHCKAGR 155 (208)
Q Consensus 126 ~~~~~~~~~~~i~~~~~~g-~~VlVHC~~G~ 155 (208)
+.+.+..+++++...-..+ .-++.||..++
T Consensus 144 tl~Ei~~Av~~i~~~G~~~~~i~llhC~s~Y 174 (329)
T TIGR03569 144 TLEEIEAAVGVLRDAGTPDSNITLLHCTTEY 174 (329)
T ss_pred CHHHHHHHHHHHHHcCCCcCcEEEEEECCCC
Confidence 5677888888886432111 36899999874
No 232
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=20.55 E-value=78 Score=23.19 Aligned_cols=20 Identities=15% Similarity=0.100 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCChhHHHHHH
Q 028512 145 KTTYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 145 ~~VlVHC~~G~~RS~~v~~a 164 (208)
.+||+-|.+...||++.=+.
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l 22 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEAL 22 (139)
T ss_pred ceEEEEcCCCcccCHHHHHH
Confidence 57999999999999876554
No 233
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=20.52 E-value=45 Score=29.85 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.3
Q ss_pred cEEEEcCCCCChhHHHHHH
Q 028512 146 TTYVHCKAGRGRSTTIVLC 164 (208)
Q Consensus 146 ~VlVHC~~G~~RS~~v~~a 164 (208)
--...|+.|++|||++=+.
T Consensus 458 vP~wNCkSGKDRTGmmD~e 476 (564)
T PRK15378 458 VPAWNCKSGKDRTGMMDSE 476 (564)
T ss_pred eeeeccCCCCccccchHHH
Confidence 3478999999999986543
No 234
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=20.26 E-value=4.2e+02 Score=23.15 Aligned_cols=83 Identities=10% Similarity=-0.026 Sum_probs=41.8
Q ss_pred hHHHhCC-CcEEEEecCCCcc-CCCCccccccCcEE--EEEeCCCCCCCCcHHHHHHHHHHHHHHhhC--CCcEEEEcCC
Q 028512 80 PRLKQLG-VGGVITLNEPYET-LVPSSLYHAHGIDH--LVIPTRDYLFAPSFVDIRRAVDFIHSNSCA--GKTTYVHCKA 153 (208)
Q Consensus 80 ~~L~~~g-I~~Vi~l~~~~e~-~~~~~~~~~~gi~~--~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~--g~~VlVHC~~ 153 (208)
..+++.+ +..+|..+..... ......++..++.. +.+.+.+.+ ....+..-.++..+.+.+.+ .--|+||
T Consensus 24 ~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~-~tl~~~t~~~i~~~~~vl~~~kPD~VlVh--- 99 (383)
T COG0381 24 KALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPG-QTLGEITGNIIEGLSKVLEEEKPDLVLVH--- 99 (383)
T ss_pred HHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccC-CCHHHHHHHHHHHHHHHHHhhCCCEEEEe---
Confidence 3455554 8888888765321 01122334444442 112222212 44455555666666665554 4569999
Q ss_pred CCChhHHHHHHHHH
Q 028512 154 GRGRSTTIVLCYLV 167 (208)
Q Consensus 154 G~~RS~~v~~ayL~ 167 (208)
| +++.+++++.-.
T Consensus 100 G-DT~t~lA~alaa 112 (383)
T COG0381 100 G-DTNTTLAGALAA 112 (383)
T ss_pred C-CcchHHHHHHHH
Confidence 3 566666644333
No 235
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=20.23 E-value=3.5e+02 Score=23.59 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=37.3
Q ss_pred hhHHHhCCCcEEEEecCCCccCCCCccccccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChh
Q 028512 79 VPRLKQLGVGGVITLNEPYETLVPSSLYHAHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRS 158 (208)
Q Consensus 79 ~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS 158 (208)
.+.|+++||++|+-+........-....+..+|+++...-+.. -........ +..|++..+-|..|-|=+
T Consensus 7 ~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~-----A~~mAdgya-----r~tg~~gv~~~t~GpG~~ 76 (432)
T TIGR00173 7 VEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERS-----AGFFALGLA-----KASGRPVAVVCTSGTAVA 76 (432)
T ss_pred HHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCcc-----HHHHHHHHH-----hccCCCEEEEECCcchHh
Confidence 3678899999999887654321111122234566654442221 112222221 122556666666666655
Q ss_pred HHHHH
Q 028512 159 TTIVL 163 (208)
Q Consensus 159 ~~v~~ 163 (208)
-++.+
T Consensus 77 N~l~g 81 (432)
T TIGR00173 77 NLLPA 81 (432)
T ss_pred hhhHH
Confidence 44433
No 236
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=20.21 E-value=6.2e+02 Score=22.51 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=28.1
Q ss_pred ccCcEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHH
Q 028512 108 AHGIDHLVIPTRDYLFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVE 168 (208)
Q Consensus 108 ~~gi~~~~~p~~D~~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~ 168 (208)
..|+..+++ .|....-+.....+.+.-|.+.. +-+|-+||.+- ||+..++||..
T Consensus 167 ~~g~DSIci--KDmaGlltP~~ayelVk~iK~~~--~~pv~lHtH~T---sG~a~m~ylkA 220 (472)
T COG5016 167 EMGVDSICI--KDMAGLLTPYEAYELVKAIKKEL--PVPVELHTHAT---SGMAEMTYLKA 220 (472)
T ss_pred HcCCCEEEe--ecccccCChHHHHHHHHHHHHhc--CCeeEEecccc---cchHHHHHHHH
Confidence 345544443 34322333334445555454443 47899998764 44555666654
No 237
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=20.14 E-value=1.8e+02 Score=23.32 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHH
Q 028512 129 DIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCY 165 (208)
Q Consensus 129 ~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ay 165 (208)
.+++..+.+.......+.|.||=.+|+|-|.++..++
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~ 40 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVA 40 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecc
Confidence 4566666666644456789999999999998776655
No 238
>PRK10318 hypothetical protein; Provisional
Probab=20.08 E-value=1.2e+02 Score=21.75 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhC----CCcEEEEcCCCCChhH
Q 028512 130 IRRAVDFIHSNSCA----GKTTYVHCKAGRGRST 159 (208)
Q Consensus 130 ~~~~~~~i~~~~~~----g~~VlVHC~~G~~RS~ 159 (208)
+..+=+||+....+ |+|=.|+|..|..+++
T Consensus 70 i~taE~FI~~~ASkSs~SGkpY~V~c~~~~~~~S 103 (121)
T PRK10318 70 IDTAEQFIDKVASSSSISGKPYIVKCPGKSDENA 103 (121)
T ss_pred cccHHHHHHHHhhhcccCCCCeEEEcCCCCcccH
Confidence 34455666665443 8999999999976443
No 239
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=20.06 E-value=1.4e+02 Score=29.16 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=48.6
Q ss_pred cccccCcEEEEEeCCC------C---CCCCcHHHHHHHHHHHHHHhhCCCcEEEEcCCCCChhHHHHHHHHHHhCC----
Q 028512 105 LYHAHGIDHLVIPTRD------Y---LFAPSFVDIRRAVDFIHSNSCAGKTTYVHCKAGRGRSTTIVLCYLVEYKH---- 171 (208)
Q Consensus 105 ~~~~~gi~~~~~p~~D------~---~~~~~~~~~~~~~~~i~~~~~~g~~VlVHC~~G~~RS~~v~~ayL~~~~~---- 171 (208)
+.+-.++.+..+|..- . -.....+.+..+++.+.+....|.||||-|..= ..| =.+..+|- ..|
T Consensus 396 f~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Si-e~s-E~ls~~L~-~~gi~h~ 472 (896)
T PRK13104 396 FQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSI-EAS-EFLSQLLK-KENIKHQ 472 (896)
T ss_pred HHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcH-HHH-HHHHHHHH-HcCCCeE
Confidence 4455688888888732 1 112334677888888888888999999999642 112 22333333 333
Q ss_pred -----CCHHHHHHHHHHhCCCC
Q 028512 172 -----MAPAAALEYVRCRRPRV 188 (208)
Q Consensus 172 -----~s~~~A~~~vr~~Rp~~ 188 (208)
..-.+|-...+.-+++.
T Consensus 473 vLnak~~q~Ea~iia~Ag~~G~ 494 (896)
T PRK13104 473 VLNAKFHEKEAQIIAEAGRPGA 494 (896)
T ss_pred eecCCCChHHHHHHHhCCCCCc
Confidence 34555655555555543
Done!