Query 028513
Match_columns 208
No_of_seqs 206 out of 1740
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 12:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 3.6E-27 7.8E-32 169.6 16.7 134 70-206 10-156 (160)
2 KOG0027 Calmodulin and related 99.9 1.8E-25 3.8E-30 163.0 16.7 131 74-206 2-149 (151)
3 PTZ00183 centrin; Provisional 99.9 2.7E-22 5.8E-27 147.0 17.1 134 72-207 9-155 (158)
4 KOG0028 Ca2+-binding protein ( 99.9 2.4E-22 5.2E-27 141.8 14.8 132 73-206 26-170 (172)
5 PTZ00184 calmodulin; Provision 99.9 5E-22 1.1E-26 144.0 16.8 133 72-206 3-148 (149)
6 KOG0031 Myosin regulatory ligh 99.9 8.1E-21 1.8E-25 133.1 15.3 128 72-205 24-164 (171)
7 KOG0037 Ca2+-binding protein, 99.9 3.1E-20 6.7E-25 137.8 15.7 128 79-207 56-189 (221)
8 KOG0030 Myosin essential light 99.9 1.5E-20 3.2E-25 129.7 12.7 129 74-205 5-150 (152)
9 KOG0034 Ca2+/calmodulin-depend 99.8 3.3E-19 7.2E-24 132.6 15.2 131 72-207 25-176 (187)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.8 1.5E-17 3.3E-22 123.8 13.7 133 72-206 21-175 (193)
11 KOG0036 Predicted mitochondria 99.8 4.2E-17 9E-22 131.2 15.1 132 74-206 8-146 (463)
12 KOG4223 Reticulocalbin, calume 99.6 8E-15 1.7E-19 115.0 9.3 124 78-202 161-301 (325)
13 KOG4223 Reticulocalbin, calume 99.6 3.5E-14 7.5E-19 111.5 10.1 129 77-206 74-228 (325)
14 PLN02964 phosphatidylserine de 99.4 1.8E-12 3.9E-17 112.5 13.4 108 72-185 135-272 (644)
15 cd05022 S-100A13 S-100A13: S-1 99.4 4.7E-13 1E-17 88.2 7.1 63 143-206 10-75 (89)
16 PF13499 EF-hand_7: EF-hand do 99.4 9.4E-13 2E-17 82.3 8.2 61 143-204 2-66 (66)
17 cd05027 S-100B S-100B: S-100B 99.4 5.1E-12 1.1E-16 83.3 8.0 63 143-206 10-79 (88)
18 KOG0377 Protein serine/threoni 99.3 2.5E-11 5.5E-16 98.9 12.8 124 80-206 464-615 (631)
19 KOG0038 Ca2+-binding kinase in 99.3 5E-11 1.1E-15 83.4 11.8 129 73-206 21-177 (189)
20 KOG0027 Calmodulin and related 99.3 4.9E-11 1.1E-15 86.9 10.3 92 116-207 7-114 (151)
21 cd05022 S-100A13 S-100A13: S-1 99.3 2.8E-11 6.1E-16 79.7 7.6 65 77-142 5-72 (89)
22 cd05029 S-100A6 S-100A6: S-100 99.3 2.9E-11 6.4E-16 79.7 7.7 63 143-206 12-79 (88)
23 KOG0037 Ca2+-binding protein, 99.3 4.8E-11 1E-15 89.2 9.4 75 82-157 126-206 (221)
24 PF13833 EF-hand_8: EF-hand do 99.2 4.4E-11 9.6E-16 71.6 7.2 52 154-206 1-53 (54)
25 PF13499 EF-hand_7: EF-hand do 99.2 3.5E-11 7.6E-16 75.1 7.0 60 81-141 1-64 (66)
26 KOG0044 Ca2+ sensor (EF-Hand s 99.2 5.9E-11 1.3E-15 88.6 8.9 91 78-169 62-175 (193)
27 PTZ00183 centrin; Provisional 99.2 2E-10 4.2E-15 83.9 11.5 90 117-206 17-118 (158)
28 cd05031 S-100A10_like S-100A10 99.2 5.1E-11 1.1E-15 79.8 7.6 63 143-206 10-79 (94)
29 cd05027 S-100B S-100B: S-100B 99.2 9.7E-11 2.1E-15 77.2 8.5 66 77-143 5-77 (88)
30 cd05026 S-100Z S-100Z: S-100Z 99.2 7.2E-11 1.6E-15 78.8 7.9 63 143-206 12-81 (93)
31 cd05025 S-100A1 S-100A1: S-100 99.2 1.1E-10 2.3E-15 77.9 7.9 64 143-206 11-80 (92)
32 COG5126 FRQ1 Ca2+-binding prot 99.2 4.3E-10 9.4E-15 81.4 11.0 92 114-206 14-120 (160)
33 smart00027 EH Eps15 homology d 99.2 3.5E-10 7.7E-15 76.0 9.8 74 73-149 3-76 (96)
34 smart00027 EH Eps15 homology d 99.2 1.3E-10 2.8E-15 78.1 7.6 62 143-207 12-73 (96)
35 cd00052 EH Eps15 homology doma 99.2 1.8E-10 3.9E-15 71.9 7.4 60 144-206 2-61 (67)
36 PTZ00184 calmodulin; Provision 99.2 6E-10 1.3E-14 80.3 11.1 90 117-206 11-112 (149)
37 cd00213 S-100 S-100: S-100 dom 99.1 3.9E-10 8.4E-15 74.5 7.0 63 143-206 10-79 (88)
38 cd05029 S-100A6 S-100A6: S-100 99.1 1.4E-09 3E-14 71.7 9.3 69 77-146 7-80 (88)
39 cd00051 EFh EF-hand, calcium b 99.1 8.6E-10 1.9E-14 67.0 7.9 61 143-204 2-62 (63)
40 cd05023 S-100A11 S-100A11: S-1 99.1 6.9E-10 1.5E-14 73.3 7.7 64 143-206 11-80 (89)
41 PLN02964 phosphatidylserine de 99.1 7.2E-10 1.6E-14 96.6 9.5 117 85-206 112-243 (644)
42 cd05026 S-100Z S-100Z: S-100Z 99.0 1.8E-09 3.8E-14 72.1 8.6 65 77-142 7-78 (93)
43 cd00252 SPARC_EC SPARC_EC; ext 99.0 1E-09 2.2E-14 75.8 7.1 65 136-205 43-107 (116)
44 cd05031 S-100A10_like S-100A10 99.0 1.8E-09 3.9E-14 72.2 8.1 65 77-142 5-76 (94)
45 cd05025 S-100A1 S-100A1: S-100 99.0 2.1E-09 4.5E-14 71.6 8.3 66 78-144 7-79 (92)
46 cd00213 S-100 S-100: S-100 dom 99.0 3.2E-09 6.9E-14 70.1 9.1 68 77-144 5-78 (88)
47 KOG4251 Calcium binding protei 99.0 1.8E-09 3.9E-14 82.1 8.2 126 78-205 99-308 (362)
48 PF14658 EF-hand_9: EF-hand do 99.0 2.6E-09 5.7E-14 65.3 7.2 62 145-206 2-64 (66)
49 KOG0028 Ca2+-binding protein ( 99.0 1E-08 2.2E-13 73.1 10.0 90 117-207 33-135 (172)
50 KOG2562 Protein phosphatase 2 99.0 7.7E-09 1.7E-13 85.1 10.6 132 67-202 265-420 (493)
51 KOG0040 Ca2+-binding actin-bun 98.9 1.5E-08 3.2E-13 92.9 12.9 125 71-205 2244-2397(2399)
52 KOG0034 Ca2+/calmodulin-depend 98.9 1E-08 2.2E-13 76.7 10.0 89 82-170 68-176 (187)
53 KOG2643 Ca2+ binding protein, 98.9 6.7E-09 1.4E-13 84.9 9.3 124 80-206 318-453 (489)
54 cd05030 calgranulins Calgranul 98.9 4.1E-09 8.8E-14 69.6 6.5 63 143-206 10-79 (88)
55 cd00052 EH Eps15 homology doma 98.9 6E-09 1.3E-13 64.9 6.8 59 83-144 2-60 (67)
56 KOG0041 Predicted Ca2+-binding 98.9 5.5E-09 1.2E-13 77.1 7.4 63 143-206 101-163 (244)
57 cd05023 S-100A11 S-100A11: S-1 98.9 1.5E-08 3.2E-13 66.9 8.4 66 77-143 6-78 (89)
58 cd00051 EFh EF-hand, calcium b 98.8 2E-08 4.3E-13 60.9 7.2 60 82-142 2-61 (63)
59 cd00252 SPARC_EC SPARC_EC; ext 98.8 3.4E-08 7.4E-13 68.2 8.1 63 75-142 43-105 (116)
60 cd05030 calgranulins Calgranul 98.8 7.6E-08 1.6E-12 63.5 8.6 73 77-150 5-84 (88)
61 PF13833 EF-hand_8: EF-hand do 98.8 2.9E-08 6.3E-13 59.2 5.9 50 94-143 2-51 (54)
62 KOG0041 Predicted Ca2+-binding 98.7 1.8E-07 3.8E-12 69.2 10.1 95 73-168 92-202 (244)
63 KOG2643 Ca2+ binding protein, 98.7 2.1E-07 4.5E-12 76.4 10.7 125 81-206 234-384 (489)
64 PF14658 EF-hand_9: EF-hand do 98.6 2E-07 4.4E-12 57.1 6.2 61 84-144 2-63 (66)
65 KOG1029 Endocytic adaptor prot 98.6 7.5E-07 1.6E-11 77.6 11.1 126 74-206 10-257 (1118)
66 PF00036 EF-hand_1: EF hand; 98.6 1.3E-07 2.8E-12 48.7 4.1 27 180-206 2-28 (29)
67 KOG0036 Predicted mitochondria 98.6 1E-06 2.2E-11 71.9 11.2 111 80-202 51-179 (463)
68 PF12763 EF-hand_4: Cytoskelet 98.5 4.9E-07 1.1E-11 61.2 7.3 74 73-150 3-76 (104)
69 PF00036 EF-hand_1: EF hand; 98.5 2.1E-07 4.6E-12 47.9 3.9 28 143-170 2-29 (29)
70 KOG0030 Myosin essential light 98.5 3.5E-07 7.6E-12 63.8 6.1 65 76-142 84-148 (152)
71 cd05024 S-100A10 S-100A10: A s 98.5 1.1E-06 2.3E-11 57.7 7.8 62 143-206 10-76 (91)
72 cd05024 S-100A10 S-100A10: A s 98.4 2.6E-06 5.7E-11 55.9 8.7 64 77-142 5-73 (91)
73 KOG0169 Phosphoinositide-speci 98.4 7.1E-06 1.5E-10 71.8 12.9 129 76-206 132-274 (746)
74 KOG0031 Myosin regulatory ligh 98.4 2E-06 4.3E-11 61.2 7.6 64 79-143 100-163 (171)
75 PF12763 EF-hand_4: Cytoskelet 98.4 2.7E-06 5.9E-11 57.6 7.8 60 143-206 12-71 (104)
76 KOG0751 Mitochondrial aspartat 98.3 7.8E-06 1.7E-10 68.3 11.0 94 77-170 33-137 (694)
77 PF13405 EF-hand_6: EF-hand do 98.3 1.2E-06 2.5E-11 45.9 3.9 29 143-171 2-31 (31)
78 PRK12309 transaldolase/EF-hand 98.3 4E-06 8.6E-11 69.8 8.9 49 143-205 336-384 (391)
79 PF13405 EF-hand_6: EF-hand do 98.2 2.5E-06 5.5E-11 44.6 3.7 30 81-110 1-31 (31)
80 KOG0751 Mitochondrial aspartat 98.2 7.5E-06 1.6E-10 68.4 8.2 122 82-204 110-242 (694)
81 KOG4666 Predicted phosphate ac 98.2 2.3E-06 5E-11 67.9 4.9 106 93-205 240-358 (412)
82 PRK12309 transaldolase/EF-hand 98.1 1.5E-05 3.3E-10 66.3 8.7 59 110-170 328-386 (391)
83 PF13202 EF-hand_5: EF hand; P 98.1 5.1E-06 1.1E-10 41.1 3.5 23 144-166 2-24 (25)
84 KOG2562 Protein phosphatase 2 98.0 3.7E-05 8E-10 63.9 8.7 124 81-205 226-378 (493)
85 PF14788 EF-hand_10: EF hand; 98.0 4E-05 8.7E-10 44.3 6.0 49 158-207 2-50 (51)
86 KOG0038 Ca2+-binding kinase in 98.0 4.3E-05 9.2E-10 54.0 7.2 87 84-170 75-178 (189)
87 KOG1707 Predicted Ras related/ 98.0 6.6E-05 1.4E-09 64.3 9.8 137 67-206 182-377 (625)
88 PF10591 SPARC_Ca_bdg: Secrete 98.0 3.4E-06 7.4E-11 58.1 1.7 58 143-203 56-113 (113)
89 KOG0046 Ca2+-binding actin-bun 97.9 4.2E-05 9E-10 64.5 8.0 73 69-142 8-82 (627)
90 PF13202 EF-hand_5: EF hand; P 97.9 1.8E-05 4E-10 39.1 3.6 25 180-204 1-25 (25)
91 KOG4065 Uncharacterized conser 97.9 0.00011 2.4E-09 49.7 7.4 85 54-141 44-141 (144)
92 KOG4065 Uncharacterized conser 97.8 7E-05 1.5E-09 50.7 5.8 61 144-204 70-143 (144)
93 PF14788 EF-hand_10: EF hand; 97.8 6.9E-05 1.5E-09 43.4 5.1 46 96-142 1-46 (51)
94 KOG0377 Protein serine/threoni 97.7 0.00016 3.4E-09 60.0 7.9 69 80-152 547-618 (631)
95 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.3E-05 2.8E-10 55.3 0.7 62 77-141 51-112 (113)
96 PF09279 EF-hand_like: Phospho 97.6 0.0003 6.6E-09 45.6 6.5 63 143-206 2-69 (83)
97 KOG4666 Predicted phosphate ac 97.5 0.00023 5.1E-09 56.8 6.2 95 77-171 256-361 (412)
98 KOG0046 Ca2+-binding actin-bun 97.5 0.00043 9.3E-09 58.6 6.9 70 134-205 13-84 (627)
99 KOG0040 Ca2+-binding actin-bun 97.4 0.0014 3.1E-08 61.7 9.9 77 127-206 2241-2324(2399)
100 PF05042 Caleosin: Caleosin re 97.3 0.0081 1.8E-07 44.0 11.4 118 80-203 7-163 (174)
101 KOG1029 Endocytic adaptor prot 97.3 0.0013 2.8E-08 58.2 7.8 65 75-142 190-254 (1118)
102 smart00054 EFh EF-hand, calciu 97.0 0.001 2.2E-08 32.8 3.3 25 181-205 3-27 (29)
103 KOG1955 Ral-GTPase effector RA 97.0 0.008 1.7E-07 50.8 9.9 67 73-142 224-290 (737)
104 smart00054 EFh EF-hand, calciu 97.0 0.0015 3.2E-08 32.2 3.8 27 143-169 2-28 (29)
105 KOG0998 Synaptic vesicle prote 96.9 0.001 2.2E-08 60.9 3.8 126 73-205 122-344 (847)
106 KOG4251 Calcium binding protei 96.5 0.0086 1.9E-07 46.3 5.9 53 117-169 101-168 (362)
107 KOG0035 Ca2+-binding actin-bun 96.5 0.043 9.3E-07 50.0 11.1 93 71-165 738-848 (890)
108 KOG1955 Ral-GTPase effector RA 96.5 0.0086 1.9E-07 50.7 6.3 62 142-206 232-293 (737)
109 KOG3555 Ca2+-binding proteogly 96.1 0.0079 1.7E-07 48.6 4.2 89 81-169 212-310 (434)
110 KOG3866 DNA-binding protein of 95.9 0.031 6.7E-07 44.7 6.6 62 143-204 246-322 (442)
111 PF09279 EF-hand_like: Phospho 95.9 0.038 8.2E-07 35.6 6.1 61 81-142 1-66 (83)
112 PF05042 Caleosin: Caleosin re 95.9 0.039 8.5E-07 40.5 6.5 34 175-208 93-126 (174)
113 PLN02952 phosphoinositide phos 95.8 0.086 1.9E-06 46.5 9.3 63 143-206 40-110 (599)
114 KOG0169 Phosphoinositide-speci 95.7 0.1 2.2E-06 46.7 9.4 87 115-206 134-232 (746)
115 KOG0998 Synaptic vesicle prote 95.6 0.01 2.3E-07 54.5 3.1 120 80-206 11-190 (847)
116 KOG2243 Ca2+ release channel ( 95.5 0.029 6.4E-07 53.0 5.5 61 143-205 4059-4119(5019)
117 KOG0042 Glycerol-3-phosphate d 95.2 0.059 1.3E-06 46.6 6.1 70 72-142 585-654 (680)
118 KOG0042 Glycerol-3-phosphate d 95.0 0.049 1.1E-06 47.1 5.1 63 143-206 595-657 (680)
119 KOG3555 Ca2+-binding proteogly 94.9 0.069 1.5E-06 43.4 5.6 59 143-206 252-310 (434)
120 PF05517 p25-alpha: p25-alpha 94.8 0.25 5.5E-06 35.9 8.0 64 143-206 1-69 (154)
121 PF05517 p25-alpha: p25-alpha 94.8 0.61 1.3E-05 33.9 9.8 84 84-170 6-91 (154)
122 KOG3866 DNA-binding protein of 94.6 0.067 1.5E-06 42.8 4.7 26 83-108 247-272 (442)
123 PF08726 EFhand_Ca_insen: Ca2+ 94.5 0.055 1.2E-06 33.7 3.2 52 143-203 8-66 (69)
124 KOG4578 Uncharacterized conser 94.0 0.022 4.7E-07 45.9 0.9 63 143-205 335-397 (421)
125 KOG1265 Phospholipase C [Lipid 93.8 0.97 2.1E-05 41.5 10.6 115 88-206 156-299 (1189)
126 KOG4578 Uncharacterized conser 92.6 0.036 7.9E-07 44.6 0.1 48 122-169 338-398 (421)
127 KOG0035 Ca2+-binding actin-bun 92.5 0.32 7E-06 44.6 5.9 63 143-206 749-816 (890)
128 KOG2243 Ca2+ release channel ( 91.8 0.3 6.5E-06 46.7 4.9 56 85-142 4062-4117(5019)
129 KOG4347 GTPase-activating prot 91.1 0.3 6.6E-06 43.0 4.1 45 118-163 556-612 (671)
130 KOG4347 GTPase-activating prot 90.7 0.46 1E-05 41.9 4.7 55 143-199 557-611 (671)
131 PF08726 EFhand_Ca_insen: Ca2+ 89.6 0.35 7.5E-06 30.1 2.4 55 80-140 6-64 (69)
132 PF09068 EF-hand_2: EF hand; 88.7 6.5 0.00014 27.6 8.8 27 143-169 99-125 (127)
133 PF09069 EF-hand_3: EF-hand; 87.3 6.3 0.00014 25.9 7.5 61 143-206 5-75 (90)
134 KOG1264 Phospholipase C [Lipid 86.1 3.7 8E-05 37.7 7.3 129 74-205 137-292 (1267)
135 PLN02222 phosphoinositide phos 85.1 3.7 8E-05 36.4 6.9 62 143-206 27-90 (581)
136 PLN02228 Phosphoinositide phos 83.1 6.1 0.00013 35.0 7.4 62 143-206 26-92 (567)
137 KOG1707 Predicted Ras related/ 81.9 2 4.3E-05 37.8 3.9 68 71-142 306-374 (625)
138 PF14513 DAG_kinase_N: Diacylg 80.9 6.9 0.00015 27.9 5.8 73 95-187 6-78 (138)
139 PLN02230 phosphoinositide phos 80.7 8.5 0.00018 34.3 7.4 63 143-206 31-102 (598)
140 KOG4004 Matricellular protein 79.8 0.62 1.3E-05 35.1 0.2 61 143-206 189-250 (259)
141 PF12174 RST: RCD1-SRO-TAF4 (R 78.5 2.5 5.5E-05 26.3 2.6 34 173-206 20-53 (70)
142 PF08976 DUF1880: Domain of un 78.4 2.3 5.1E-05 29.1 2.6 29 114-142 4-32 (118)
143 KOG4004 Matricellular protein 76.9 1.2 2.7E-05 33.5 1.0 43 125-167 195-248 (259)
144 PLN02952 phosphoinositide phos 76.2 9.3 0.0002 34.2 6.4 52 154-206 13-65 (599)
145 PRK09430 djlA Dna-J like membr 74.7 42 0.0009 26.8 9.3 91 93-187 68-175 (267)
146 PF14513 DAG_kinase_N: Diacylg 74.6 5 0.00011 28.6 3.6 48 155-205 5-59 (138)
147 PF07308 DUF1456: Protein of u 73.5 12 0.00026 23.2 4.6 47 158-205 14-60 (68)
148 PF01023 S_100: S-100/ICaBP ty 72.9 13 0.00028 20.8 4.3 33 77-109 3-37 (44)
149 PF00404 Dockerin_1: Dockerin 72.5 6.6 0.00014 18.3 2.5 17 90-106 1-17 (21)
150 KOG0506 Glutaminase (contains 72.5 24 0.00052 30.6 7.5 41 85-126 91-131 (622)
151 PLN02223 phosphoinositide phos 71.8 17 0.00038 31.9 6.8 63 143-206 18-92 (537)
152 TIGR01848 PHA_reg_PhaR polyhyd 71.2 15 0.00032 24.9 4.9 65 126-190 12-81 (107)
153 PF08414 NADPH_Ox: Respiratory 71.0 21 0.00045 23.8 5.6 43 78-126 28-70 (100)
154 KOG2871 Uncharacterized conser 69.7 4.6 9.9E-05 33.5 2.8 57 143-200 311-368 (449)
155 cd07313 terB_like_2 tellurium 68.9 8.2 0.00018 25.6 3.5 10 131-140 13-22 (104)
156 KOG1954 Endocytosis/signaling 67.0 8.6 0.00019 32.3 3.8 57 143-203 446-502 (532)
157 PF00046 Homeobox: Homeobox do 66.6 23 0.00049 20.4 6.4 44 73-124 6-49 (57)
158 PF07879 PHB_acc_N: PHB/PHA ac 66.6 14 0.00029 22.5 3.7 39 148-187 10-58 (64)
159 cd00086 homeodomain Homeodomai 64.8 25 0.00053 20.2 6.3 45 73-125 6-50 (59)
160 PF11116 DUF2624: Protein of u 64.4 36 0.00079 22.0 6.1 34 156-190 13-46 (85)
161 PF05099 TerB: Tellurite resis 64.3 13 0.00028 26.1 4.0 60 94-154 37-111 (140)
162 KOG2301 Voltage-gated Ca2+ cha 63.4 9.3 0.0002 38.1 3.9 66 73-140 1410-1479(1592)
163 PF03979 Sigma70_r1_1: Sigma-7 62.7 9.9 0.00021 24.3 2.8 30 155-187 19-48 (82)
164 cd07313 terB_like_2 tellurium 62.3 42 0.00091 22.1 6.9 48 94-142 13-62 (104)
165 PF12872 OST-HTH: OST-HTH/LOTU 61.9 34 0.00074 20.9 5.3 37 131-167 21-57 (74)
166 KOG2871 Uncharacterized conser 61.5 6.7 0.00015 32.6 2.3 61 79-140 308-369 (449)
167 PLN02222 phosphoinositide phos 61.1 46 0.001 29.8 7.5 60 81-142 26-87 (581)
168 KOG0039 Ferric reductase, NADH 61.1 14 0.00031 33.4 4.5 62 143-205 20-88 (646)
169 PF12174 RST: RCD1-SRO-TAF4 (R 60.4 23 0.00049 22.0 4.0 40 67-109 15-54 (70)
170 KOG3449 60S acidic ribosomal p 59.8 52 0.0011 22.4 6.4 42 145-187 5-46 (112)
171 cd08315 Death_TRAILR_DR4_DR5 D 59.6 49 0.0011 21.9 7.3 86 80-184 4-90 (96)
172 PF07499 RuvA_C: RuvA, C-termi 59.4 30 0.00065 19.4 4.4 39 160-203 3-41 (47)
173 TIGR01565 homeo_ZF_HD homeobox 58.3 38 0.00082 20.2 4.9 42 72-121 6-51 (58)
174 KOG4286 Dystrophin-like protei 58.1 1.1E+02 0.0024 28.3 9.2 59 143-203 472-530 (966)
175 PF09068 EF-hand_2: EF hand; 57.8 63 0.0014 22.6 9.5 26 180-205 99-124 (127)
176 KOG1954 Endocytosis/signaling 57.8 20 0.00043 30.2 4.4 56 81-140 445-500 (532)
177 PF04157 EAP30: EAP30/Vps36 fa 57.1 88 0.0019 24.1 8.4 14 99-112 60-73 (223)
178 KOG3077 Uncharacterized conser 56.3 1E+02 0.0022 24.6 10.1 61 81-142 65-126 (260)
179 PF13623 SurA_N_2: SurA N-term 56.1 62 0.0013 23.2 6.3 37 167-204 99-145 (145)
180 PLN02228 Phosphoinositide phos 55.6 73 0.0016 28.5 7.7 61 81-143 25-90 (567)
181 PF01885 PTS_2-RNA: RNA 2'-pho 55.2 27 0.00057 26.3 4.4 37 151-188 26-62 (186)
182 cd07316 terB_like_DjlA N-termi 55.0 46 0.00099 21.9 5.3 11 131-141 13-23 (106)
183 PF09069 EF-hand_3: EF-hand; 55.0 58 0.0013 21.4 7.3 73 80-169 3-75 (90)
184 KOG4403 Cell surface glycoprot 54.1 77 0.0017 27.2 7.2 29 80-108 68-96 (575)
185 COG1321 TroR Mn-dependent tran 53.6 67 0.0015 23.3 6.2 97 75-188 5-121 (154)
186 PRK00819 RNA 2'-phosphotransfe 53.0 34 0.00073 25.6 4.6 34 152-186 28-61 (179)
187 PF09373 PMBR: Pseudomurein-bi 50.9 23 0.0005 18.3 2.5 20 132-151 3-22 (33)
188 PF12419 DUF3670: SNF2 Helicas 50.8 34 0.00073 24.3 4.2 70 129-203 60-138 (141)
189 PLN02230 phosphoinositide phos 50.1 97 0.0021 27.9 7.6 63 79-142 28-99 (598)
190 PHA03308 transcriptional regul 49.9 14 0.00031 33.6 2.5 25 6-30 1237-1261(1463)
191 PF03672 UPF0154: Uncharacteri 47.6 60 0.0013 19.8 4.3 32 94-126 29-60 (64)
192 PF05099 TerB: Tellurite resis 47.2 6.9 0.00015 27.5 0.2 12 130-141 36-47 (140)
193 KOG3077 Uncharacterized conser 47.1 92 0.002 24.8 6.3 20 152-171 112-131 (260)
194 PHA02105 hypothetical protein 45.9 51 0.0011 19.6 3.6 48 157-204 4-55 (68)
195 PTZ00373 60S Acidic ribosomal 45.5 98 0.0021 21.2 6.5 53 84-142 7-59 (112)
196 TIGR01639 P_fal_TIGR01639 Plas 45.3 56 0.0012 19.6 4.0 30 157-187 9-38 (61)
197 KOG1265 Phospholipase C [Lipid 44.5 99 0.0021 29.3 6.9 63 80-142 221-296 (1189)
198 PRK00523 hypothetical protein; 44.2 79 0.0017 19.8 4.8 32 94-126 37-68 (72)
199 PF08461 HTH_12: Ribonuclease 44.1 41 0.00088 20.5 3.3 37 154-191 10-46 (66)
200 COG5069 SAC6 Ca2+-binding acti 43.4 1.2E+02 0.0027 26.5 6.9 67 73-142 478-545 (612)
201 KOG4301 Beta-dystrobrevin [Cyt 43.3 69 0.0015 26.6 5.2 73 71-145 99-173 (434)
202 PTZ00373 60S Acidic ribosomal 42.7 76 0.0016 21.8 4.7 51 146-202 8-58 (112)
203 KOG3449 60S acidic ribosomal p 42.2 1.1E+02 0.0024 20.9 5.2 55 82-142 3-57 (112)
204 PF11116 DUF2624: Protein of u 41.6 97 0.0021 20.1 7.2 42 96-138 14-55 (85)
205 KOG0869 CCAAT-binding factor, 41.5 1.4E+02 0.003 21.8 7.8 84 94-187 30-115 (168)
206 KOG0506 Glutaminase (contains 40.9 51 0.0011 28.7 4.3 61 144-205 89-157 (622)
207 PF09336 Vps4_C: Vps4 C termin 40.5 43 0.00094 20.2 3.0 27 157-184 29-55 (62)
208 PRK13654 magnesium-protoporphy 40.0 65 0.0014 26.6 4.7 83 75-159 43-135 (355)
209 TIGR03573 WbuX N-acetyl sugar 39.3 74 0.0016 26.3 5.1 44 154-204 299-342 (343)
210 cd05833 Ribosomal_P2 Ribosomal 39.0 93 0.002 21.2 4.7 51 146-202 6-56 (109)
211 KOG4301 Beta-dystrobrevin [Cyt 38.4 87 0.0019 26.0 5.1 74 131-206 99-173 (434)
212 PF10265 DUF2217: Uncharacteri 38.4 2.7E+02 0.0059 24.6 8.4 28 179-206 326-354 (514)
213 PF07128 DUF1380: Protein of u 38.0 1.2E+02 0.0027 21.6 5.3 31 158-189 27-57 (139)
214 KOG0843 Transcription factor E 37.7 90 0.002 23.4 4.7 49 68-124 103-151 (197)
215 PF15290 Syntaphilin: Golgi-lo 37.4 83 0.0018 25.3 4.7 26 16-41 11-36 (305)
216 CHL00185 ycf59 magnesium-proto 37.2 47 0.001 27.3 3.4 83 75-159 39-131 (351)
217 cd04411 Ribosomal_P1_P2_L12p R 37.0 1.3E+02 0.0029 20.3 7.1 50 83-140 5-54 (105)
218 PF07572 BCNT: Bucentaur or cr 36.9 41 0.00089 21.6 2.5 34 134-167 30-65 (81)
219 smart00389 HOX Homeodomain. DN 36.6 82 0.0018 17.7 5.9 45 73-125 6-50 (56)
220 PF07308 DUF1456: Protein of u 36.5 1E+02 0.0023 18.9 4.9 30 99-129 16-45 (68)
221 PRK09430 djlA Dna-J like membr 35.8 90 0.002 24.9 4.9 10 155-164 69-78 (267)
222 KOG2303 Predicted NAD synthase 35.7 1.3E+02 0.0029 26.5 6.0 98 78-186 518-638 (706)
223 KOG4629 Predicted mechanosensi 35.6 1.2E+02 0.0026 28.0 6.1 61 136-204 399-459 (714)
224 PF06384 ICAT: Beta-catenin-in 35.2 52 0.0011 21.0 2.7 23 162-185 21-43 (78)
225 PF09107 SelB-wing_3: Elongati 35.2 84 0.0018 18.0 3.5 31 94-130 8-38 (50)
226 PRK08181 transposase; Validate 35.1 97 0.0021 24.7 5.0 44 95-142 5-48 (269)
227 cd01047 ACSF Aerobic Cyclase S 34.7 83 0.0018 25.6 4.4 81 77-159 25-115 (323)
228 cd05833 Ribosomal_P2 Ribosomal 34.0 1.5E+02 0.0033 20.1 6.5 50 85-140 6-55 (109)
229 KOG4403 Cell surface glycoprot 33.8 27 0.00058 29.8 1.7 89 92-180 40-140 (575)
230 PF13551 HTH_29: Winged helix- 33.5 1.4E+02 0.003 19.5 6.3 51 74-125 58-110 (112)
231 PF10500 SR-25: Nuclear RNA-sp 33.4 36 0.00078 26.3 2.1 21 133-153 159-179 (225)
232 PF10437 Lip_prot_lig_C: Bacte 33.2 91 0.002 19.8 3.8 43 159-204 43-86 (86)
233 TIGR00624 tag DNA-3-methyladen 33.0 1.1E+02 0.0024 22.9 4.7 45 78-123 51-95 (179)
234 PRK01844 hypothetical protein; 33.0 1.3E+02 0.0027 18.9 4.6 32 94-126 36-67 (72)
235 PF08671 SinI: Anti-repressor 32.9 37 0.00081 17.3 1.5 12 195-206 17-28 (30)
236 COG5562 Phage envelope protein 32.4 39 0.00084 23.9 2.0 25 182-206 76-100 (137)
237 TIGR02029 AcsF magnesium-proto 32.3 64 0.0014 26.4 3.5 83 75-159 33-125 (337)
238 COG3763 Uncharacterized protei 31.3 1.3E+02 0.0029 18.7 5.0 33 94-127 36-68 (71)
239 PF14223 UBN2: gag-polypeptide 31.2 1.7E+02 0.0036 19.7 9.3 67 132-205 39-107 (119)
240 PF11829 DUF3349: Protein of u 31.1 1.6E+02 0.0035 19.5 5.0 54 71-127 33-86 (96)
241 KOG0871 Class 2 transcription 30.5 1.3E+02 0.0028 21.7 4.3 81 93-183 9-91 (156)
242 PLN00138 large subunit ribosom 29.8 1.6E+02 0.0034 20.2 4.7 49 147-201 7-55 (113)
243 PF12995 DUF3879: Domain of un 29.6 2.3E+02 0.0051 20.9 5.7 56 97-155 2-57 (186)
244 PF06648 DUF1160: Protein of u 29.4 1.6E+02 0.0035 20.5 4.7 46 139-187 35-80 (122)
245 PF11848 DUF3368: Domain of un 29.3 1.1E+02 0.0024 17.1 3.6 33 154-187 14-47 (48)
246 PHA01351 putative minor struct 29.3 4.3E+02 0.0094 24.6 8.2 78 94-187 590-667 (1070)
247 PF02885 Glycos_trans_3N: Glyc 29.1 1.2E+02 0.0026 18.2 3.7 45 156-203 13-57 (66)
248 KOG3741 Poly(A) ribonuclease s 29.0 40 0.00087 29.9 2.0 58 85-148 591-650 (655)
249 PF11020 DUF2610: Domain of un 28.8 85 0.0018 20.0 2.9 41 165-205 36-76 (82)
250 PF02337 Gag_p10: Retroviral G 28.3 1.7E+02 0.0037 19.2 4.4 62 102-164 14-80 (90)
251 KOG1785 Tyrosine kinase negati 28.1 2.7E+02 0.0058 23.8 6.4 74 95-169 189-274 (563)
252 PLN02223 phosphoinositide phos 28.0 3.4E+02 0.0073 24.2 7.4 61 81-142 17-89 (537)
253 PF02459 Adeno_terminal: Adeno 27.6 4.4E+02 0.0096 23.5 11.5 47 143-190 457-503 (548)
254 PHA01351 putative minor struct 27.5 5.1E+02 0.011 24.1 8.8 79 93-187 493-571 (1070)
255 PLN02508 magnesium-protoporphy 27.2 1.7E+02 0.0038 24.2 5.1 82 76-159 40-131 (357)
256 PF12983 DUF3867: Protein of u 26.8 2.7E+02 0.0059 20.7 6.4 99 96-204 3-106 (186)
257 PF02761 Cbl_N2: CBL proto-onc 26.7 1.9E+02 0.004 18.8 6.7 49 156-205 21-69 (85)
258 KOG4070 Putative signal transd 25.9 1.3E+02 0.0029 21.8 3.8 68 81-148 13-88 (180)
259 KOG0039 Ferric reductase, NADH 25.9 1.7E+02 0.0036 26.8 5.4 30 79-109 17-46 (646)
260 PF04695 Pex14_N: Peroxisomal 25.6 2.5E+02 0.0053 19.8 5.8 46 143-191 6-51 (136)
261 PF01325 Fe_dep_repress: Iron 25.5 1.5E+02 0.0033 17.5 5.0 53 74-136 2-54 (60)
262 KOG2419 Phosphatidylserine dec 25.4 43 0.00093 30.3 1.6 63 143-206 439-533 (975)
263 KOG0719 Molecular chaperone (D 25.3 3.4E+02 0.0074 21.4 8.8 62 114-187 69-132 (264)
264 TIGR02675 tape_meas_nterm tape 24.8 92 0.002 19.5 2.6 12 131-142 28-39 (75)
265 PF04361 DUF494: Protein of un 24.7 2.7E+02 0.0059 20.2 5.4 43 143-188 5-48 (155)
266 PRK00819 RNA 2'-phosphotransfe 24.6 1.7E+02 0.0036 21.9 4.4 36 90-126 27-62 (179)
267 TIGR00470 sepS O-phosphoseryl- 24.2 4.5E+02 0.0098 23.3 7.3 72 69-142 78-150 (533)
268 PF14848 HU-DNA_bdg: DNA-bindi 24.2 1.7E+02 0.0038 20.2 4.2 33 154-187 25-57 (124)
269 TIGR00135 gatC glutamyl-tRNA(G 24.1 1.6E+02 0.0035 19.0 3.9 29 158-187 1-29 (93)
270 PLN03081 pentatricopeptide (PP 24.1 5.5E+02 0.012 23.4 14.4 29 143-171 174-203 (697)
271 PRK06253 O-phosphoseryl-tRNA s 24.0 4.8E+02 0.011 23.2 7.6 73 69-142 78-151 (529)
272 PF13335 Mg_chelatase_2: Magne 23.8 2.2E+02 0.0048 18.7 7.0 68 92-168 27-94 (96)
273 PRK14981 DNA-directed RNA poly 23.5 1.7E+02 0.0036 20.0 3.9 28 159-187 80-107 (112)
274 PF08044 DUF1707: Domain of un 23.2 1.4E+02 0.0031 17.3 3.1 12 131-142 21-32 (53)
275 PF06757 Ins_allergen_rp: Inse 23.2 2.9E+02 0.0062 20.4 5.5 72 74-152 15-89 (179)
276 PF01885 PTS_2-RNA: RNA 2'-pho 23.0 1.4E+02 0.0031 22.4 3.8 37 90-127 26-62 (186)
277 COG1460 Uncharacterized protei 22.9 1.5E+02 0.0032 20.4 3.5 30 158-188 80-109 (114)
278 PRK10353 3-methyl-adenine DNA 22.5 2E+02 0.0043 21.7 4.4 44 78-122 52-95 (187)
279 cd07176 terB tellurite resista 22.5 51 0.0011 21.7 1.3 12 130-141 15-26 (111)
280 PF14932 HAUS-augmin3: HAUS au 22.4 2E+02 0.0043 22.7 4.7 33 157-190 24-58 (256)
281 PRK00034 gatC aspartyl/glutamy 22.2 1.9E+02 0.0041 18.7 4.0 30 157-187 2-31 (95)
282 PF12238 MSA-2c: Merozoite sur 22.1 3.1E+02 0.0068 21.0 5.4 30 77-106 81-111 (205)
283 PF12486 DUF3702: ImpA domain 22.1 3.1E+02 0.0068 19.8 5.5 33 77-109 66-98 (148)
284 PF12631 GTPase_Cys_C: Catalyt 21.8 2.1E+02 0.0045 17.6 4.3 48 78-126 21-72 (73)
285 KOG4776 Uncharacterized conser 21.3 1.2E+02 0.0027 23.4 3.1 36 133-168 178-215 (235)
286 PRK09462 fur ferric uptake reg 21.3 3.1E+02 0.0066 19.4 5.2 35 102-138 4-38 (148)
287 TIGR02787 codY_Gpos GTP-sensin 21.2 3.5E+02 0.0076 21.4 5.6 34 72-106 175-208 (251)
288 cd04411 Ribosomal_P1_P2_L12p R 21.1 2.7E+02 0.0059 18.7 5.4 40 158-203 17-56 (105)
289 KOG2278 RNA:NAD 2'-phosphotran 21.0 1.1E+02 0.0025 22.7 2.8 37 151-188 28-64 (207)
290 PF12616 DUF3775: Protein of u 21.0 2.3E+02 0.005 17.8 4.1 40 160-205 3-42 (75)
291 PRK12373 NADH dehydrogenase su 20.9 5.4E+02 0.012 22.1 7.3 94 94-188 50-170 (400)
292 PF03250 Tropomodulin: Tropomo 20.9 3.2E+02 0.0069 19.8 4.9 25 69-93 19-43 (147)
293 PF00808 CBFD_NFYB_HMF: Histon 20.9 1.8E+02 0.0039 17.2 3.4 24 143-166 41-64 (65)
294 COG2818 Tag 3-methyladenine DN 20.8 85 0.0019 23.6 2.2 44 78-122 53-96 (188)
295 cd06404 PB1_aPKC PB1 domain is 20.2 2E+02 0.0043 18.6 3.5 60 131-197 17-78 (83)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.95 E-value=3.6e-27 Score=169.57 Aligned_cols=134 Identities=31% Similarity=0.598 Sum_probs=128.5
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-------
Q 028513 70 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR------- 142 (208)
Q Consensus 70 ~~~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~------- 142 (208)
....|+.+++++|+++|..+|++++|.|+..+|..+++.+|.. ++..++..++..+|. +.+.|+|.+|+.+
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~-~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~ 87 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFN-PSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKR 87 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCC-CcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhcc
Confidence 3457888999999999999999999999999999999999999 999999999999998 9999999999999
Q ss_pred ------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 ------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+.++|+.||.|++|+|+..+|+++|..+| ..+++++++.+++.+|.|++|.|+|++|++.+..
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lg-e~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLG-ERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhc-ccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 99999999999999999999999999999 9999999999999999999999999999997753
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=1.8e-25 Score=163.04 Aligned_cols=131 Identities=45% Similarity=0.707 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-----------
Q 028513 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR----------- 142 (208)
Q Consensus 74 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~----------- 142 (208)
++.++...+.++|..+|.+++|.|+..||..+++.+|.. ++..++..++..+|.+++|.|+|++|+.+
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~-~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~ 80 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN-PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE 80 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc
Confidence 456888999999999999999999999999999999999 99999999999999999999999999998
Q ss_pred ------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 ------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
++.+|+.||.|++|+|+..||+.+|..+| ..++.+++..++..+|.|+||.|+|++|+.++..
T Consensus 81 ~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg-~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 81 EASSEELKEAFRVFDKDGDGFISASELKKVLTSLG-EKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhC-CcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 68999999999999999999999999999 9999999999999999999999999999999865
No 3
>PTZ00183 centrin; Provisional
Probab=99.90 E-value=2.7e-22 Score=147.04 Aligned_cols=134 Identities=34% Similarity=0.588 Sum_probs=126.0
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH---------
Q 028513 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR--------- 142 (208)
Q Consensus 72 ~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~--------- 142 (208)
..++++++.++..+|..+|.+++|.|+..||..++..+|.. +....+..++..+|.+++|.|+|+||+..
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFE-PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 35677899999999999999999999999999999999987 88899999999999999999999999876
Q ss_pred ----HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHhc
Q 028513 143 ----LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 207 (208)
Q Consensus 143 ----~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~~ 207 (208)
+..+|+.+|.+++|.|+.+||..++..+| ..+++.++..++..+|.|++|.|+|++|+.++...
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELG-ETITDEELQEMIDEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 77889999999999999999999999999 89999999999999999999999999999998753
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.4e-22 Score=141.78 Aligned_cols=132 Identities=35% Similarity=0.551 Sum_probs=126.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH----------
Q 028513 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR---------- 142 (208)
Q Consensus 73 ~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~---------- 142 (208)
.+++++.+.+...|..||.+++|.|+..||+.+++++|+. +...++.+++..+|+++.|.|+|++|...
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE-~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFE-PKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCC-cchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 4556788999999999999999999999999999999999 99999999999999999999999999988
Q ss_pred ---HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 ---LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ---~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|+.+|.|++|.|+..+|..+...+| .+++++++.+++..+|.+++|.|+.+||..+|+.
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLg-enltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELG-ENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhC-ccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 99999999999999999999999999999 9999999999999999999999999999998864
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.90 E-value=5e-22 Score=144.03 Aligned_cols=133 Identities=36% Similarity=0.614 Sum_probs=124.8
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH---------
Q 028513 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR--------- 142 (208)
Q Consensus 72 ~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~--------- 142 (208)
.++++++++.+...|..+|.+++|.|+..||..++..++.. +....+..++..+|.+++|.|+|++|+.+
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC-CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 35777899999999999999999999999999999999987 88889999999999999999999999987
Q ss_pred ----HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 ----LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ----~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|+.+|.+++|.|+.+||..++..+| ..++..++..++..+|.+++|.|+|++|+.++..
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHC-CCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 67899999999999999999999999999 8899999999999999999999999999988753
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.87 E-value=8.1e-21 Score=133.14 Aligned_cols=128 Identities=23% Similarity=0.411 Sum_probs=121.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH---------
Q 028513 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR--------- 142 (208)
Q Consensus 72 ~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~--------- 142 (208)
..|++.+++++.++|..+|.|+||.|++++|+..+..+|.. +++++++.++. ...|.|+|.-|+.+
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-~~d~elDaM~~----Ea~gPINft~FLTmfGekL~gtd 98 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-ASDEELDAMMK----EAPGPINFTVFLTMFGEKLNGTD 98 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHH----hCCCCeeHHHHHHHHHHHhcCCC
Confidence 45667899999999999999999999999999999999999 99999999885 56789999999998
Q ss_pred ----HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 143 ----LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 143 ----~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
+..+|+.||.+++|.|..+.|+++|...| ..+++++++.+++.+-.|..|.|+|.+|+.+++
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g-Dr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG-DRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc-ccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999999999999999999999999999 999999999999999999999999999999886
No 7
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.86 E-value=3.1e-20 Score=137.85 Aligned_cols=128 Identities=26% Similarity=0.349 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH------HHHHHHHHCC
Q 028513 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR------LKETFDFFDA 152 (208)
Q Consensus 79 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~------~~~~F~~~D~ 152 (208)
...+...|...|.++.|.|+.+|+.++|......+.+.+.|+.|+..+|.+.+|.|+|.||..+ ++.+|+.||+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~ 135 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDR 135 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3468889999999999999999999999877777799999999999999999999999999999 9999999999
Q ss_pred CCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHhc
Q 028513 153 DHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 207 (208)
Q Consensus 153 ~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~~ 207 (208)
|++|.|+..||+++|..+| ..+++...+.|+++||..++|.|.+++|+.++..+
T Consensus 136 D~SG~I~~sEL~~Al~~~G-y~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 136 DRSGTIDSSELRQALTQLG-YRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred CCCCcccHHHHHHHHHHcC-cCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999998889999999999998654
No 8
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.86 E-value=1.5e-20 Score=129.71 Aligned_cols=129 Identities=28% Similarity=0.441 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccC--CCCcccHHHHHHH---------
Q 028513 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDRE--GDGYIPLEALISR--------- 142 (208)
Q Consensus 74 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~eF~~~--------- 142 (208)
+++++..+++++|..||..+||+|+..+...+|+.+|.+ +++.++.+....++.+ +-..|+|++|+.+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~n-PT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQN-PTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCC-CcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 456788999999999999999999999999999999999 9999999999888776 4578999999998
Q ss_pred ------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 143 ------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 143 ------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
+.+.++.||++++|+|...||+++|.++| ..++++|++.++... .|.+|.|+|++|++.+.
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlG-ekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLG-EKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHH-hhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 77889999999999999999999999999 999999999999988 78899999999998653
No 9
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.83 E-value=3.3e-19 Score=132.59 Aligned_cols=131 Identities=26% Similarity=0.423 Sum_probs=112.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCc-ccHHHHHHH-------
Q 028513 72 ADISLDMNYELVQACKLLDRD-NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGY-IPLEALISR------- 142 (208)
Q Consensus 72 ~~ls~~~~~~l~~~F~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~eF~~~------- 142 (208)
..++.+++..|+..|.++|.+ ++|.|+.+||..+.. +.. .....+++..++.+++|. |+|++|+..
T Consensus 25 ~~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~-~~~----Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~ 99 (187)
T KOG0034|consen 25 TQFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPE-LAL----NPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPK 99 (187)
T ss_pred cccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHH-Hhc----CcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCC
Confidence 457889999999999999999 999999999999983 333 246677888888888888 999999999
Q ss_pred ------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCC--HHH----HHHHHHhHcCCCCCceeHHHHHHHHHhc
Q 028513 143 ------LKETFDFFDADHDGKITAEELFGVFTKLGDELCT--LDD----CRGMIALVDKNGDGFVCFEDFSRMMELQ 207 (208)
Q Consensus 143 ------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s--~~~----~~~l~~~~D~~~dg~i~~~eF~~~l~~~ 207 (208)
++.+|++||.+++|+|+.+|+.+++..+.....+ ++. ++.+|..+|.|+||+|+++||++++...
T Consensus 100 ~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 100 ASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 8889999999999999999999999987424444 433 5777999999999999999999998754
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.77 E-value=1.5e-17 Score=123.83 Aligned_cols=133 Identities=23% Similarity=0.310 Sum_probs=111.5
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH---------
Q 028513 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR--------- 142 (208)
Q Consensus 72 ~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~--------- 142 (208)
+.+++.++..+++-|..-. ..|.++.++|+.++.......-....++.+|+.+|.+++|.|+|.||+..
T Consensus 21 t~f~~~ei~~~Yr~Fk~~c--P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~ 98 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNEC--PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTL 98 (193)
T ss_pred cCCCHHHHHHHHHHhcccC--CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcH
Confidence 4677778777777776632 47999999999999998754255677889999999999999999999988
Q ss_pred ---HHHHHHHHCCCCCCceeHHHHHHHHHHh----CC------CCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 ---LKETFDFFDADHDGKITAEELFGVFTKL----GD------ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ---~~~~F~~~D~~~~G~I~~~e~~~~l~~~----g~------~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+.++|++||.||+|+|+.+|+..++..+ +. ....++.++.+|..+|.|+||.|+++||+..+..
T Consensus 99 eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 99 EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 8999999999999999999999998765 21 1223556899999999999999999999987654
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.75 E-value=4.2e-17 Score=131.15 Aligned_cols=132 Identities=26% Similarity=0.376 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-------HHHH
Q 028513 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR-------LKET 146 (208)
Q Consensus 74 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-------~~~~ 146 (208)
..++...+++..|..+|.+++|.++..++.+.+..+..+.+....+..++..+|.|.+|.|+|+||..+ +..+
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~ 87 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRI 87 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHH
Confidence 445777789999999999999999999999999999876566778889999999999999999999999 8999
Q ss_pred HHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 147 FDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 147 F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
|..+|.++||.|+.+|+.+.|..+| .++++++++.+++.+|.++.+.|+++||.+++..
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~g-i~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLG-IQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhC-CccCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 9999999999999999999999999 9999999999999999999999999999998753
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=8e-15 Score=115.03 Aligned_cols=124 Identities=25% Similarity=0.360 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH---------------
Q 028513 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR--------------- 142 (208)
Q Consensus 78 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~--------------- 142 (208)
.+.+-.+.|...|.|++|.++.+||..+|..-..+.+....|...+..+|+|++|.|+++||+.-
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 45566789999999999999999999999887666466677888899999999999999999987
Q ss_pred --HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHH
Q 028513 143 --LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSR 202 (208)
Q Consensus 143 --~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~ 202 (208)
-...|..+|.|+||+|+.+|++.++..-+ ......++..|+...|.|+||+++++|.+.
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~-~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSE-QDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCC-ccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 55666788999999999999999998877 778889999999999999999999999874
No 13
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.5e-14 Score=111.48 Aligned_cols=129 Identities=27% Similarity=0.346 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH--------------
Q 028513 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR-------------- 142 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-------------- 142 (208)
+..+++..++.++|.+++|.|+..|+..++...-.. ....++.+-|..+|.+.+|.|+|+|+...
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~-~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKK-YVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 345578999999999999999999999999876554 55567777888999999999999999877
Q ss_pred ------------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 ------------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ------------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
-...|++-|.|++|.++++||..+|...-...+.+-.+.+-+...|.|+||+|+++||+.-|..
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 6788999999999999999999999887657888899999999999999999999999987654
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=99.44 E-value=1.8e-12 Score=112.51 Aligned_cols=108 Identities=24% Similarity=0.377 Sum_probs=92.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-CCCCCHHH---HHHHHHhhccCCCCcccHHHHHHH-----
Q 028513 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLG-ADPPTQEE---VKSMLSEVDREGDGYIPLEALISR----- 142 (208)
Q Consensus 72 ~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~---~~~~~~~~d~~~~g~i~~~eF~~~----- 142 (208)
..++..+++++.++|..+|+|++|.+ +..+++.+| .. +++.+ ++.++..+|.+++|.|+|+||+.+
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~-pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIED-PVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCC-CCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc
Confidence 45677899999999999999999997 889999999 46 77776 789999999999999999999987
Q ss_pred -------HHHHHHHHCCCCCCceeHHHHHHHHHH-------------hCCCCCCH-HHHHHHHH
Q 028513 143 -------LKETFDFFDADHDGKITAEELFGVFTK-------------LGDELCTL-DDCRGMIA 185 (208)
Q Consensus 143 -------~~~~F~~~D~~~~G~I~~~e~~~~l~~-------------~g~~~~s~-~~~~~l~~ 185 (208)
+..+|+.||.|++|+|+.+||.++|.. .+ ..++. ++++.|++
T Consensus 210 ~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg-~~l~~~~~~~~iiH 272 (644)
T PLN02964 210 NLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCG-EALGVSDKLNAMIH 272 (644)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhc-CcccchhhHHHHHH
Confidence 889999999999999999999999988 45 45555 55666653
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.43 E-value=4.7e-13 Score=88.18 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=59.4
Q ss_pred HHHHHHHHCC-CCCCceeHHHHHHHHHH-hCCCCCCH-HHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDA-DHDGKITAEELFGVFTK-LGDELCTL-DDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~-~~~G~I~~~e~~~~l~~-~g~~~~s~-~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|+.||. +++|+|+..||+.+|.. +| ..++. ++++.+++.+|.|+||.|+|+||+.++..
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLP-HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 7899999999 99999999999999999 88 77888 99999999999999999999999998864
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.43 E-value=9.4e-13 Score=82.28 Aligned_cols=61 Identities=36% Similarity=0.599 Sum_probs=54.0
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHH----HHHHHHhHcCCCCCceeHHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDD----CRGMIALVDKNGDGFVCFEDFSRMM 204 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~----~~~l~~~~D~~~dg~i~~~eF~~~l 204 (208)
++.+|+.+|.|++|+|+.+||..++..++ ...++.+ +..++..+|.|++|.|+|+||+.++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLG-RDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTT-SHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 57899999999999999999999999998 6665544 4555999999999999999999875
No 17
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.35 E-value=5.1e-12 Score=83.28 Aligned_cols=63 Identities=22% Similarity=0.430 Sum_probs=58.9
Q ss_pred HHHHHHHHC-CCCCC-ceeHHHHHHHHHH-----hCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFD-ADHDG-KITAEELFGVFTK-----LGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D-~~~~G-~I~~~e~~~~l~~-----~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|+.|| .+++| .|+..||+.+|.. +| ...++++++.+++.+|.|++|+|+|++|+.++..
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg-~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE-EIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 789999998 79999 5999999999999 78 8889999999999999999999999999988764
No 18
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.34 E-value=2.5e-11 Score=98.92 Aligned_cols=124 Identities=19% Similarity=0.311 Sum_probs=102.5
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH----------------
Q 028513 80 YELVQACKLLDRDNDGVVLRSELEALLIRL-GADPPTQEEVKSMLSEVDREGDGYIPLEALISR---------------- 142 (208)
Q Consensus 80 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~---------------- 142 (208)
..+...|+.+|....|+|+...+..++... |+. ++-..+..- ....+.+|.|.|.+....
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~-LPWr~L~~k--la~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLN-LPWRLLRPK--LANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCC-CcHHHhhhh--ccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 357788999999999999999999999865 554 444444332 233456778888877766
Q ss_pred --------HHHHHHHHCCCCCCceeHHHHHHHHHHhC---CCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 --------LKETFDFFDADHDGKITAEELFGVFTKLG---DELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 --------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g---~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|+.+|.|++|.|+.+||++++.-++ ...++++++.++.+.+|.|+||.|+++||+..++.
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 89999999999999999999999987653 16889999999999999999999999999998865
No 19
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.32 E-value=5e-11 Score=83.41 Aligned_cols=129 Identities=18% Similarity=0.218 Sum_probs=98.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCC-----------CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHH
Q 028513 73 DISLDMNYELVQACKLLDRDN-----------DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALIS 141 (208)
Q Consensus 73 ~ls~~~~~~l~~~F~~~D~~~-----------~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 141 (208)
-++..++-++...|..+.++- .-.+..+.+.++ ..+.-+ ..-+++...+..+|.|.++|++|+.
T Consensus 21 FFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kM-PELken----pfk~ri~e~FSeDG~GnlsfddFlD 95 (189)
T KOG0038|consen 21 FFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKM-PELKEN----PFKRRICEVFSEDGRGNLSFDDFLD 95 (189)
T ss_pred cccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhC-hhhhcC----hHHHHHHHHhccCCCCcccHHHHHH
Confidence 355577777888888776652 123444444333 222222 2234566677889999999999999
Q ss_pred H-------------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHH----HHHHHhHcCCCCCceeHHHHHHHH
Q 028513 142 R-------------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDC----RGMIALVDKNGDGFVCFEDFSRMM 204 (208)
Q Consensus 142 ~-------------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~----~~l~~~~D~~~dg~i~~~eF~~~l 204 (208)
+ +..+|+.||-|+|++|...++...+..+-...++++++ +.++..+|.|+||++++.+|..++
T Consensus 96 mfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 96 MFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred HHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 8 88899999999999999999999999985578998885 566888999999999999999887
Q ss_pred Hh
Q 028513 205 EL 206 (208)
Q Consensus 205 ~~ 206 (208)
.+
T Consensus 176 ~r 177 (189)
T KOG0038|consen 176 LR 177 (189)
T ss_pred Hh
Confidence 54
No 20
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.28 E-value=4.9e-11 Score=86.86 Aligned_cols=92 Identities=29% Similarity=0.533 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhccCCCCcccHHHHHHH------------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCC----CHHH
Q 028513 116 QEEVKSMLSEVDREGDGYIPLEALISR------------LKETFDFFDADHDGKITAEELFGVFTKLGDELC----TLDD 179 (208)
Q Consensus 116 ~~~~~~~~~~~d~~~~g~i~~~eF~~~------------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~----s~~~ 179 (208)
..++..+|..+|.+++|.|+..|+-.+ +..++..+|.+++|.|+.+||..++...+.... +.++
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 356888999999999999999999888 999999999999999999999999988762222 3559
Q ss_pred HHHHHHhHcCCCCCceeHHHHHHHHHhc
Q 028513 180 CRGMIALVDKNGDGFVCFEDFSRMMELQ 207 (208)
Q Consensus 180 ~~~l~~~~D~~~dg~i~~~eF~~~l~~~ 207 (208)
+.++|+.||.|++|.|++.|+..+|...
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 9999999999999999999999998753
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.26 E-value=2.8e-11 Score=79.72 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHH-hCCCCCCH-HHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 77 DMNYELVQACKLLDR-DNDGVVLRSELEALLIR-LGADPPTQ-EEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
..+..|..+|+.||. +++|.|+..||+.+|.. +|.. ++. .+++.++..+|.|++|.|+|+||+.+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~-ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l 72 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHL-LKDVEGLEEKMKNLDVNQDSKLSFEEFWEL 72 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhh-ccCHHHHHHHHHHhCCCCCCCCcHHHHHHH
Confidence 457789999999999 99999999999999999 8766 777 89999999999999999999999888
No 22
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.26 E-value=2.9e-11 Score=79.67 Aligned_cols=63 Identities=17% Similarity=0.333 Sum_probs=57.9
Q ss_pred HHHHHHHHCC-CC-CCceeHHHHHHHHHH---hCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDA-DH-DGKITAEELFGVFTK---LGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~-~~-~G~I~~~e~~~~l~~---~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|..||. +| +|+|+.+||+.+|.. +| ..++++++.++++.+|.|++|+|+|+||+.++..
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg-~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIG-SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 7789999998 67 899999999999973 68 8899999999999999999999999999998865
No 23
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.26 E-value=4.8e-11 Score=89.16 Aligned_cols=75 Identities=28% Similarity=0.405 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH------HHHHHHHHCCCCC
Q 028513 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR------LKETFDFFDADHD 155 (208)
Q Consensus 82 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~------~~~~F~~~D~~~~ 155 (208)
++.+|..+|.|+.|.|+..||+++|..+|+. ++.+..+.+++.||..++|.|.|++|+++ +.++|+.+|++..
T Consensus 126 Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~-Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~q~ 204 (221)
T KOG0037|consen 126 WRNVFRTYDRDRSGTIDSSELRQALTQLGYR-LSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRDTAQQ 204 (221)
T ss_pred HHHHHHhcccCCCCcccHHHHHHHHHHcCcC-CCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444444444444444444444444444444 44444444444444443444444444444 3444444444444
Q ss_pred Cc
Q 028513 156 GK 157 (208)
Q Consensus 156 G~ 157 (208)
|.
T Consensus 205 G~ 206 (221)
T KOG0037|consen 205 GS 206 (221)
T ss_pred ee
Confidence 43
No 24
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.24 E-value=4.4e-11 Score=71.58 Aligned_cols=52 Identities=35% Similarity=0.636 Sum_probs=49.1
Q ss_pred CCCceeHHHHHHHHHHhCCCC-CCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 154 HDGKITAEELFGVFTKLGDEL-CTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 154 ~~G~I~~~e~~~~l~~~g~~~-~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
++|.|+.++|+.+|..+| .. +++.++..||..+|.|++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g-~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLG-IKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTT-SSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhC-CCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 479999999999998889 88 99999999999999999999999999999875
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.24 E-value=3.5e-11 Score=75.08 Aligned_cols=60 Identities=35% Similarity=0.646 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHH----HHHHHHhhccCCCCcccHHHHHH
Q 028513 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEE----VKSMLSEVDREGDGYIPLEALIS 141 (208)
Q Consensus 81 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~eF~~ 141 (208)
+|+++|..+|.|++|.|+..||..++..++.. ..... +..++..+|.+++|.|+|+||+.
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRD-MSDEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSH-STHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 47899999999999999999999999999876 54443 44446667777777777777654
No 26
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.23 E-value=5.9e-11 Score=88.64 Aligned_cols=91 Identities=24% Similarity=0.342 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH---------------
Q 028513 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR--------------- 142 (208)
Q Consensus 78 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~--------------- 142 (208)
.......+|+.+|.|++|.|+..||..+|..+-.. ..++-+...|..||.|++|.|+++|++.+
T Consensus 62 ~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG-t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~ 140 (193)
T KOG0044|consen 62 ASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG-TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPE 140 (193)
T ss_pred HHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC-cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCc
Confidence 34456789999999999999999999998877555 66777888899999999999999999998
Q ss_pred --------HHHHHHHHCCCCCCceeHHHHHHHHHH
Q 028513 143 --------LKETFDFFDADHDGKITAEELFGVFTK 169 (208)
Q Consensus 143 --------~~~~F~~~D~~~~G~I~~~e~~~~l~~ 169 (208)
...+|..+|.|+||.||.+||...+..
T Consensus 141 ~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 141 DEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred ccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 788999999999999999999998754
No 27
>PTZ00183 centrin; Provisional
Probab=99.23 E-value=2e-10 Score=83.90 Aligned_cols=90 Identities=23% Similarity=0.353 Sum_probs=78.8
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHH------------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHH
Q 028513 117 EEVKSMLSEVDREGDGYIPLEALISR------------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMI 184 (208)
Q Consensus 117 ~~~~~~~~~~d~~~~g~i~~~eF~~~------------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~ 184 (208)
.++..+|..+|.+++|.|+++||..+ +..+|..+|.+++|.|+.+||..++...-........+..+|
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 96 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAF 96 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 45677899999999999999999776 788999999999999999999998876421456678899999
Q ss_pred HhHcCCCCCceeHHHHHHHHHh
Q 028513 185 ALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 185 ~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
..+|.+++|.|++++|..++..
T Consensus 97 ~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 97 RLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHhCCCCCCcCcHHHHHHHHHH
Confidence 9999999999999999998864
No 28
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.23 E-value=5.1e-11 Score=79.75 Aligned_cols=63 Identities=25% Similarity=0.332 Sum_probs=57.3
Q ss_pred HHHHHHHHCC-CC-CCceeHHHHHHHHHH-----hCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDA-DH-DGKITAEELFGVFTK-----LGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~-~~-~G~I~~~e~~~~l~~-----~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|..||. ++ +|.|+..||..+|.. +| ..+++.++..++..+|.+++|.|+|++|+.++..
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg-~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLK-NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhh-ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 7889999997 87 699999999999986 46 6789999999999999999999999999988764
No 29
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.22 E-value=9.7e-11 Score=77.20 Aligned_cols=66 Identities=23% Similarity=0.368 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-----hCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 028513 77 DMNYELVQACKLLD-RDNDG-VVLRSELEALLIR-----LGADPPTQEEVKSMLSEVDREGDGYIPLEALISRL 143 (208)
Q Consensus 77 ~~~~~l~~~F~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 143 (208)
..+..|.++|..+| .+++| .|+..||+.+|.. +|.. +++.++..++..+|.+++|.|+|+||+.++
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~-~~~~~v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEI-KEQEVVDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCC-CCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 35678999999998 79999 5999999999999 8887 889999999999999999999999998873
No 30
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.22 E-value=7.2e-11 Score=78.77 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=55.5
Q ss_pred HHHHHHHHC-CCCCC-ceeHHHHHHHHHHh-----CCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFD-ADHDG-KITAEELFGVFTKL-----GDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D-~~~~G-~I~~~e~~~~l~~~-----g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|..|| .|++| +|+..||+.++... . ...++.+++.++..+|.|++|.|+|+||+.++..
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~-~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLS-SQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcc-cccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 788999998 78998 59999999999763 3 4457889999999999999999999999998864
No 31
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.19 E-value=1.1e-10 Score=77.86 Aligned_cols=64 Identities=27% Similarity=0.428 Sum_probs=56.8
Q ss_pred HHHHHHHHC-CCCCC-ceeHHHHHHHHHH-hCC---CCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFD-ADHDG-KITAEELFGVFTK-LGD---ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D-~~~~G-~I~~~e~~~~l~~-~g~---~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|..|| .+++| .|+..||..+|.. +|. ...++.+++.++..+|.|++|.|+|++|+.++..
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 789999997 99999 5999999999986 541 3468899999999999999999999999998865
No 32
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.18 E-value=4.3e-10 Score=81.36 Aligned_cols=92 Identities=23% Similarity=0.365 Sum_probs=81.1
Q ss_pred CCHHH---HHHHHHhhccCCCCcccHHHHHHH------------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHH
Q 028513 114 PTQEE---VKSMLSEVDREGDGYIPLEALISR------------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLD 178 (208)
Q Consensus 114 ~~~~~---~~~~~~~~d~~~~g~i~~~eF~~~------------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~ 178 (208)
++.++ +...|..+|.+++|.|++.++..+ +..+|..+|. |.|.|+..+|..+|...-...-+++
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~E 92 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEE 92 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHH
Confidence 55555 455688899999999999999998 8999999999 9999999999999987642566789
Q ss_pred HHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 179 DCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 179 ~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
++...|+.||.|++|+|++.+++.+|+.
T Consensus 93 el~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 93 ELREAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHHHHHHHhCCCCCceecHHHHHHHHHh
Confidence 9999999999999999999999999875
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.18 E-value=3.5e-10 Score=75.95 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=64.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHH
Q 028513 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDF 149 (208)
Q Consensus 73 ~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~ 149 (208)
.++++++..+..+|..+|.+++|.|+..|+..++...+ ++..++..++..+|.+++|.|+|+||+.++..+-+.
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~ 76 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG---LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRK 76 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999865 558889999999999999999999998875555444
No 34
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.17 E-value=1.3e-10 Score=78.09 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=57.9
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHhc
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 207 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~~ 207 (208)
+..+|..||.+++|.|+.+|+..+|...+ ++++++..++..+|.+++|.|+|++|+.++...
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~~~---~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLKSG---LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 78899999999999999999999999877 788999999999999999999999999988754
No 35
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.16 E-value=1.8e-10 Score=71.88 Aligned_cols=60 Identities=28% Similarity=0.360 Sum_probs=55.7
Q ss_pred HHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 144 KETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 144 ~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+.+|..+|.+++|.|+.+|+..++..+| ++.+++..++..+|.+++|.|+|++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5789999999999999999999999988 48899999999999999999999999998764
No 36
>PTZ00184 calmodulin; Provisional
Probab=99.16 E-value=6e-10 Score=80.34 Aligned_cols=90 Identities=23% Similarity=0.439 Sum_probs=78.0
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHH------------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHH
Q 028513 117 EEVKSMLSEVDREGDGYIPLEALISR------------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMI 184 (208)
Q Consensus 117 ~~~~~~~~~~d~~~~g~i~~~eF~~~------------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~ 184 (208)
..+...|..+|.+++|.|+++||..+ +..+|..+|.+++|.|+.++|..++............+..+|
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 34567788899999999999999876 788999999999999999999999876531445667889999
Q ss_pred HhHcCCCCCceeHHHHHHHHHh
Q 028513 185 ALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 185 ~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
..+|.+++|.|+.++|..++..
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHHH
Confidence 9999999999999999988754
No 37
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.10 E-value=3.9e-10 Score=74.51 Aligned_cols=63 Identities=17% Similarity=0.333 Sum_probs=56.4
Q ss_pred HHHHHHHHCC--CCCCceeHHHHHHHHHH-hCCCCC----CHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDA--DHDGKITAEELFGVFTK-LGDELC----TLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~--~~~G~I~~~e~~~~l~~-~g~~~~----s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|..||. +++|.|+..||..++.. +| ..+ +..++..++..+|.+++|.|+|++|+.++..
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g-~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELP-NFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhh-hhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 7889999999 89999999999999986 45 444 5899999999999999999999999998864
No 38
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.09 E-value=1.4e-09 Score=71.69 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCC-CC-CCcccHHHHHHHHHH---hCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHH
Q 028513 77 DMNYELVQACKLLDR-DN-DGVVLRSELEALLIR---LGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKET 146 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 146 (208)
+.+..|..+|+.+|. ++ +|.|+.+||+.++.. +|.. ++..++..++..+|.+++|.|+|+||+.++..+
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k-~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSK-LQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 467789999999998 67 899999999999973 6877 899999999999999999999999998884443
No 39
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.09 E-value=8.6e-10 Score=67.03 Aligned_cols=61 Identities=44% Similarity=0.722 Sum_probs=57.6
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 204 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l 204 (208)
+..+|..+|.+++|.|+.+|+..++..++ ...+...+..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 46789999999999999999999999999 99999999999999999999999999999876
No 40
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.08 E-value=6.9e-10 Score=73.27 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=55.6
Q ss_pred HHHHHHH-HCCCCCC-ceeHHHHHHHHHHhCC----CCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDF-FDADHDG-KITAEELFGVFTKLGD----ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~-~D~~~~G-~I~~~e~~~~l~~~g~----~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|+. +|.+|+| +|+.+||..++..... ...++.+++.++..+|.|+||.|+|+||+.++..
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 7889998 6788876 9999999999988621 4567899999999999999999999999998864
No 41
>PLN02964 phosphatidylserine decarboxylase
Probab=99.07 E-value=7.2e-10 Score=96.55 Aligned_cols=117 Identities=15% Similarity=0.294 Sum_probs=89.8
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHH--hCCCCCCHHHHHHHHHhhccCCCCcccHHHHHH-------------HHHHHHHH
Q 028513 85 ACKLLDRDNDGVVLRSELEALLIR--LGADPPTQEEVKSMLSEVDREGDGYIPLEALIS-------------RLKETFDF 149 (208)
Q Consensus 85 ~F~~~D~~~~g~i~~~e~~~~l~~--~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~-------------~~~~~F~~ 149 (208)
.|..+|++ .++.+++...... ..+......++...|..+|.+++|.+ +...+. ++..+|..
T Consensus 112 ~~~~~~~~---~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~ 187 (644)
T PLN02964 112 RISVFETN---RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAI 187 (644)
T ss_pred EEEEEecC---CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 34445554 6677777765543 12210222456677889999999866 222222 16889999
Q ss_pred HCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 150 FDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 150 ~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+|.|++|.|+.+||..++..++ ...+++++..+|+.+|.|++|.|+++||..+|..
T Consensus 188 ~D~DgdG~IdfdEFl~lL~~lg-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 188 VDYDEDGQLSFSEFSDLIKAFG-NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred hCCCCCCeEcHHHHHHHHHHhc-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999999999999998 8889999999999999999999999999999876
No 42
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.05 E-value=1.8e-09 Score=72.05 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHHh-----CCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 77 DMNYELVQACKLLD-RDNDG-VVLRSELEALLIRL-----GADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 77 ~~~~~l~~~F~~~D-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
..+..+.++|+.|| .|++| .|+..||+.++... ... ....++..++..+|.+++|.|+|+||+.+
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~-~~~~~v~~i~~elD~n~dG~Idf~EF~~l 78 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQ-KDPMLVDKIMNDLDSNKDNEVDFNEFVVL 78 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccc-cCHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 35678899999999 78998 59999999999763 333 56788999999999999999999999888
No 43
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.03 E-value=1e-09 Score=75.83 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 136 LEALISRLKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 136 ~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
+.....-+..+|..+|.|+||.|+.+||..++ +. ..+..+..+|..+|.|+||.|+++||+.++.
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~---~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD---PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc---chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 34444459999999999999999999999876 33 4567789999999999999999999999983
No 44
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.03 E-value=1.8e-09 Score=72.22 Aligned_cols=65 Identities=20% Similarity=0.339 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhCC-CC-CCcccHHHHHHHHHH-----hCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 77 DMNYELVQACKLLDR-DN-DGVVLRSELEALLIR-----LGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
.....+..+|..+|. |+ +|.|+..||+.+|.. +|.. ++..+++.++..+|.+++|.|+|+||+.+
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~-~s~~ei~~~~~~~D~~~dg~I~f~eF~~l 76 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQ-KDPMAVDKIMKDLDQNRDGKVNFEEFVSL 76 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcc-ccHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 346679999999997 87 699999999999986 4566 78899999999999999999999999877
No 45
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.03 E-value=2.1e-09 Score=71.63 Aligned_cols=66 Identities=21% Similarity=0.400 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhC-CCCCC-cccHHHHHHHHHH-hC----CCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHH
Q 028513 78 MNYELVQACKLLD-RDNDG-VVLRSELEALLIR-LG----ADPPTQEEVKSMLSEVDREGDGYIPLEALISRLK 144 (208)
Q Consensus 78 ~~~~l~~~F~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 144 (208)
.++.+.++|..+| .+++| .|+..||+.+|.. +| .. ++..+++.++..+|.+++|.|+|++|+.++.
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~-~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQ-KDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCC-CCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 4567999999997 99999 5999999999985 43 34 5788999999999999999999999988733
No 46
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.02 E-value=3.2e-09 Score=70.08 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHH-hCCC---CCCHHHHHHHHHhhccCCCCcccHHHHHHHHH
Q 028513 77 DMNYELVQACKLLDR--DNDGVVLRSELEALLIR-LGAD---PPTQEEVKSMLSEVDREGDGYIPLEALISRLK 144 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~--~~~g~i~~~e~~~~l~~-~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 144 (208)
++++.+..+|..+|. +++|.|+..||..++.. +|.. .++..++..++..+|.+++|.|+|++|+.++.
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 678889999999999 89999999999999986 4533 13588999999999999999999999988743
No 47
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=99.01 E-value=1.8e-09 Score=82.13 Aligned_cols=126 Identities=21% Similarity=0.326 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh---CCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH------------
Q 028513 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRL---GADPPTQEEVKSMLSEVDREGDGYIPLEALISR------------ 142 (208)
Q Consensus 78 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~------------ 142 (208)
..+.|..+|.+.|.|.||+|+..|+++++..- .+. -..++-...|...|.+++|.|+|+||..-
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfq-eameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQ-EAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHH-HHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 45678999999999999999999999987643 111 22234455688899999999999999765
Q ss_pred ------------------------------------------------------------HHHHHHHHCCCCCCceeHHH
Q 028513 143 ------------------------------------------------------------LKETFDFFDADHDGKITAEE 162 (208)
Q Consensus 143 ------------------------------------------------------------~~~~F~~~D~~~~G~I~~~e 162 (208)
+..+.+.+|.||+..++..|
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 66777788888888888888
Q ss_pred HHHHHHH-----hCCCCCCH----HHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 163 LFGVFTK-----LGDELCTL----DDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 163 ~~~~l~~-----~g~~~~s~----~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
|...... .| ..+.+ +...++-..+|.|+||.++++|+.+++.
T Consensus 258 FislpvGTVenqqg-qdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 258 FISLPVGTVENQQG-QDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred hhcCCCcchhhhhc-cchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 8765321 12 33332 2245555667888888888888877753
No 48
>PF14658 EF-hand_9: EF-hand domain
Probab=99.00 E-value=2.6e-09 Score=65.34 Aligned_cols=62 Identities=23% Similarity=0.427 Sum_probs=57.6
Q ss_pred HHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCC-CceeHHHHHHHHHh
Q 028513 145 ETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGD-GFVCFEDFSRMMEL 206 (208)
Q Consensus 145 ~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~d-g~i~~~eF~~~l~~ 206 (208)
.+|.+||.++.|.|...++..+|+.++....++.+++.+.+.+|+++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 479999999999999999999999999338999999999999999988 99999999999875
No 49
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=1e-08 Score=73.12 Aligned_cols=90 Identities=26% Similarity=0.361 Sum_probs=79.3
Q ss_pred HHHHHHHHhhccCCCCcccHHHH-HHH-----------HHHHHHHHCCCCCCceeHHHHHHHHHH-hCCCCCCHHHHHHH
Q 028513 117 EEVKSMLSEVDREGDGYIPLEAL-ISR-----------LKETFDFFDADHDGKITAEELFGVFTK-LGDELCTLDDCRGM 183 (208)
Q Consensus 117 ~~~~~~~~~~d~~~~g~i~~~eF-~~~-----------~~~~F~~~D~~~~G~I~~~e~~~~l~~-~g~~~~s~~~~~~l 183 (208)
.+++..|..+|.+++|.|+++|+ +.. +..+...+|.++.|.|+.++|+.++.. ++ ..-+.+++...
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~-e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLG-ERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHh-ccCcHHHHHHH
Confidence 46778899999999999999999 444 677888899999999999999999865 46 66699999999
Q ss_pred HHhHcCCCCCceeHHHHHHHHHhc
Q 028513 184 IALVDKNGDGFVCFEDFSRMMELQ 207 (208)
Q Consensus 184 ~~~~D~~~dg~i~~~eF~~~l~~~ 207 (208)
|+.+|.|++|+|++.+|+.+...+
T Consensus 112 frl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred HHcccccCCCCcCHHHHHHHHHHh
Confidence 999999999999999999887654
No 50
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.96 E-value=7.7e-09 Score=85.13 Aligned_cols=132 Identities=20% Similarity=0.259 Sum_probs=106.8
Q ss_pred cchhhhcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHH----hhccCCCCcccHHHHHHH
Q 028513 67 WSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLS----EVDREGDGYIPLEALISR 142 (208)
Q Consensus 67 ~~~~~~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~----~~d~~~~g~i~~~eF~~~ 142 (208)
.....+.+|.+....++..|-.+|.|++|.|+.++|...-. .. ++..-++++|. ..-...+|.++|++|+.+
T Consensus 265 ~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d---~t-lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~F 340 (493)
T KOG2562|consen 265 INQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD---HT-LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDF 340 (493)
T ss_pred hhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc---cc-hhhHHHHHHHhhccccceeeecCcccHHHHHHH
Confidence 34456677888888888889999999999999999987643 22 66788899998 334556899999999999
Q ss_pred ------------HHHHHHHHCCCCCCceeHHHHHHHHHHh-------CCCCCC-HHHHHHHHHhHcCCCCCceeHHHHHH
Q 028513 143 ------------LKETFDFFDADHDGKITAEELFGVFTKL-------GDELCT-LDDCRGMIALVDKNGDGFVCFEDFSR 202 (208)
Q Consensus 143 ------------~~~~F~~~D~~~~G~I~~~e~~~~l~~~-------g~~~~s-~~~~~~l~~~~D~~~dg~i~~~eF~~ 202 (208)
+...|+.+|.+++|.|+..|++.+.... +...++ ++.+.++++.+.+...++|++.+|..
T Consensus 341 ilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 341 ILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 9999999999999999999999886542 333333 55568888888777889999999986
No 51
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.94 E-value=1.5e-08 Score=92.93 Aligned_cols=125 Identities=21% Similarity=0.331 Sum_probs=104.3
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCC--CH-----HHHHHHHHhhccCCCCcccHHHHHHH-
Q 028513 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPP--TQ-----EEVKSMLSEVDREGDGYIPLEALISR- 142 (208)
Q Consensus 71 ~~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~--~~-----~~~~~~~~~~d~~~~g~i~~~eF~~~- 142 (208)
...+|.+.+.++..+|..||.+.+|+++..+|+.||+.+|+. + -+ .++..++...|.+.+|+|+..+|+.+
T Consensus 2244 ~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~-lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2244 HNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYD-LPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred cCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCC-CcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 457888999999999999999999999999999999999987 4 22 37999999999999999999999999
Q ss_pred -------------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCC--------CCceeHHHHH
Q 028513 143 -------------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNG--------DGFVCFEDFS 201 (208)
Q Consensus 143 -------------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~--------dg~i~~~eF~ 201 (208)
+..+|+.+|. +.-+|+.+++.+. ++.++++.++..+-+-. -+.++|.+|+
T Consensus 2323 i~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~--------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv 2393 (2399)
T KOG0040|consen 2323 ISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN--------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFV 2393 (2399)
T ss_pred HhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc--------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHH
Confidence 8999999998 7788988887654 56677777766653322 3359999998
Q ss_pred HHHH
Q 028513 202 RMME 205 (208)
Q Consensus 202 ~~l~ 205 (208)
+.|-
T Consensus 2394 ~sl~ 2397 (2399)
T KOG0040|consen 2394 NSLF 2397 (2399)
T ss_pred HHHh
Confidence 8663
No 52
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.94 E-value=1e-08 Score=76.65 Aligned_cols=89 Identities=30% Similarity=0.402 Sum_probs=77.6
Q ss_pred HHHHHHHhCCCCCCc-ccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH------------------
Q 028513 82 LVQACKLLDRDNDGV-VLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR------------------ 142 (208)
Q Consensus 82 l~~~F~~~D~~~~g~-i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~------------------ 142 (208)
..+++..++.+++|. |+.++|...+............++-.|+.||.+++|.|+.+|+..+
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~ 147 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLED 147 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHH
Confidence 357788899998888 9999999999888766233347888999999999999999999988
Q ss_pred -HHHHHHHHCCCCCCceeHHHHHHHHHHh
Q 028513 143 -LKETFDFFDADHDGKITAEELFGVFTKL 170 (208)
Q Consensus 143 -~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 170 (208)
+...|..+|.|+||.|+.+||..++...
T Consensus 148 i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 148 IVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 7889999999999999999999998654
No 53
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.93 E-value=6.7e-09 Score=84.92 Aligned_cols=124 Identities=14% Similarity=0.222 Sum_probs=96.7
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCH--HHHHHHHHhhccCCCCcccHHHHHHH---------HHHHHH
Q 028513 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQ--EEVKSMLSEVDREGDGYIPLEALISR---------LKETFD 148 (208)
Q Consensus 80 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~--~~~~~~~~~~d~~~~g~i~~~eF~~~---------~~~~F~ 148 (208)
+-+.--|..+|+...|.|+..+|..+|-.....+... ..+.++-..++.+ +-.|+++||..+ +..+..
T Consensus 318 Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~ 396 (489)
T KOG2643|consen 318 EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALR 396 (489)
T ss_pred HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHH
Confidence 3445578999999899999999999887664320111 2455566666555 556999999998 455555
Q ss_pred HHCCCCCCceeHHHHHHHHHHh-CCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 149 FFDADHDGKITAEELFGVFTKL-GDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 149 ~~D~~~~G~I~~~e~~~~l~~~-g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
.|- .-.+.|+..+|+++.... | ..+++..++.+|..||.|+||.|+++||+.+|++
T Consensus 397 fy~-~Ag~~i~~~~f~raa~~vtG-veLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 397 FYH-MAGASIDEKTFQRAAKVVTG-VELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHH-HcCCCCCHHHHHHHHHHhcC-cccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 553 344789999999998876 6 9999999999999999999999999999999875
No 54
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.92 E-value=4.1e-09 Score=69.56 Aligned_cols=63 Identities=17% Similarity=0.312 Sum_probs=55.6
Q ss_pred HHHHHHHHCCC--CCCceeHHHHHHHHH-HhCCCCCC----HHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDAD--HDGKITAEELFGVFT-KLGDELCT----LDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~--~~G~I~~~e~~~~l~-~~g~~~~s----~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|..|+.. ++|.|+.+||+.+|. .++ ..++ +.+++.+|..+|.|++|.|+|++|+.++..
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g-~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELP-NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhh-HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 67899999866 489999999999997 455 5666 899999999999999999999999998864
No 55
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.91 E-value=6e-09 Score=64.88 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=52.8
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHH
Q 028513 83 VQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLK 144 (208)
Q Consensus 83 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 144 (208)
+++|..+|.+++|.|+.+|+..++..+|. +..+++.++..+|.+++|.|+|+||+.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~---~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL---PRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC---CHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 56899999999999999999999998864 578899999999999999999999987743
No 56
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.91 E-value=5.5e-09 Score=77.06 Aligned_cols=63 Identities=32% Similarity=0.418 Sum_probs=59.0
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|+.||.+.||+|++.||..+|..+| .+.+---+..++...|.|.||+|+|.||+-+++.
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg-apQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLG-APQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhC-CchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 88899999999999999999999999999 8888888999999999999999999999977653
No 57
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.89 E-value=1.5e-08 Score=66.88 Aligned_cols=66 Identities=12% Similarity=0.238 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHH-hCCCCCC-cccHHHHHHHHHHhC-----CCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 028513 77 DMNYELVQACKL-LDRDNDG-VVLRSELEALLIRLG-----ADPPTQEEVKSMLSEVDREGDGYIPLEALISRL 143 (208)
Q Consensus 77 ~~~~~l~~~F~~-~D~~~~g-~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 143 (208)
..+..|..+|+. +|.+++| .|+..||+.++.... .. ..+.++..++..+|.|++|.|+|+||+.++
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~-~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~ 78 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQ-KDPGVLDRMMKKLDLNSDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCC-CCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 467789999999 7788876 999999999998762 23 567889999999999999999999998873
No 58
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.84 E-value=2e-08 Score=60.87 Aligned_cols=60 Identities=40% Similarity=0.692 Sum_probs=55.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 82 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
+..+|..+|.+++|.|+..|+..++..++.. .+...+..++..+|.+++|.|++++|+.+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEG-LSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 5678999999999999999999999999987 88999999999999999999999999754
No 59
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.80 E-value=3.4e-08 Score=68.25 Aligned_cols=63 Identities=22% Similarity=0.265 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 75 SLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 75 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
.+.....+.-.|..+|.|+||.|+.+||..+. .. ..+..+..++..+|.|++|.|+++||+..
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~-~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~c 105 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LD-PNEHCIKPFFESCDLDKDGSISLDEWCYC 105 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----cc-chHHHHHHHHHHHCCCCCCCCCHHHHHHH
Confidence 34677889999999999999999999999876 22 44666777888888888888888887654
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.77 E-value=7.6e-08 Score=63.47 Aligned_cols=73 Identities=11% Similarity=0.173 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhCCC--CCCcccHHHHHHHHH-HhCCCCCC----HHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHH
Q 028513 77 DMNYELVQACKLLDRD--NDGVVLRSELEALLI-RLGADPPT----QEEVKSMLSEVDREGDGYIPLEALISRLKETFDF 149 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~ 149 (208)
..+..+..+|+.++.. .+|.|+.+||+.+|. .++.. ++ ..++..++..+|.+++|.|+|+||+.++...-..
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~-~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNF-LKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHh-hccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4567899999999976 478999999999997 44544 55 8899999999999999999999999886655544
Q ss_pred H
Q 028513 150 F 150 (208)
Q Consensus 150 ~ 150 (208)
+
T Consensus 84 ~ 84 (88)
T cd05030 84 A 84 (88)
T ss_pred h
Confidence 4
No 61
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.76 E-value=2.9e-08 Score=59.20 Aligned_cols=50 Identities=38% Similarity=0.709 Sum_probs=44.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 028513 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRL 143 (208)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 143 (208)
+|.|+.++|+.+|..+|...+++.++..++..+|.+++|.|+|+||+.++
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 69999999999997777654788999999999999999999999998763
No 62
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.72 E-value=1.8e-07 Score=69.25 Aligned_cols=95 Identities=25% Similarity=0.328 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH----------
Q 028513 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR---------- 142 (208)
Q Consensus 73 ~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~---------- 142 (208)
.|+..+++.+..+|..+|.+.||+|+..||+.+|..+|.+ -+...+..++...|.|.+|.|+|.||+=+
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap-QTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~ 170 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP-QTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQ 170 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCc-hhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccc
Confidence 5677899999999999999999999999999999999998 77788999999999999999999999766
Q ss_pred ----HHHHHH--HHCCCCCCceeHHHHHHHHH
Q 028513 143 ----LKETFD--FFDADHDGKITAEELFGVFT 168 (208)
Q Consensus 143 ----~~~~F~--~~D~~~~G~I~~~e~~~~l~ 168 (208)
+..+-+ ..|....|......|.++--
T Consensus 171 ~ds~~~~LAr~~eVDVskeGV~GAknFFeAKI 202 (244)
T KOG0041|consen 171 EDSGLLRLARLSEVDVSKEGVSGAKNFFEAKI 202 (244)
T ss_pred cchHHHHHHHhcccchhhhhhhhHHHHHHHHH
Confidence 122222 25555666666665555533
No 63
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.70 E-value=2.1e-07 Score=76.36 Aligned_cols=125 Identities=16% Similarity=0.289 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHh------CCC---CC-----CHHHHHH--HHHhhccCCCCcccHHHHHHH--
Q 028513 81 ELVQACKLLDRDNDGVVLRSELEALLIRL------GAD---PP-----TQEEVKS--MLSEVDREGDGYIPLEALISR-- 142 (208)
Q Consensus 81 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~------~~~---~~-----~~~~~~~--~~~~~d~~~~g~i~~~eF~~~-- 142 (208)
.++-+|..||.||||.|+++||..+..-. |.. .+ -..+++. +.--+..++++.+++++|..+
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 35678999999999999999999987432 110 00 0112222 222357899999999999999
Q ss_pred ------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHH--HHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 ------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLD--DCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~--~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..-|..+|....|.|+..+|..+|-.+...+.... .+..+-+.++.+ +..|+++||..+.+-
T Consensus 314 ~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~F 384 (489)
T KOG2643|consen 314 NLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRF 384 (489)
T ss_pred HHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHH
Confidence 788899999999999999999999877642333322 356677777555 556999999988764
No 64
>PF14658 EF-hand_9: EF-hand domain
Probab=98.60 E-value=2e-07 Score=57.06 Aligned_cols=61 Identities=23% Similarity=0.468 Sum_probs=55.1
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCC-CcccHHHHHHHHH
Q 028513 84 QACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGD-GYIPLEALISRLK 144 (208)
Q Consensus 84 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~~~ 144 (208)
.+|..+|.++.|.|...++...|+.++.+.+.+.+++.+...+|.++. |.|+|+.|+..++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 369999999999999999999999999833999999999999999987 9999999987644
No 65
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=7.5e-07 Score=77.61 Aligned_cols=126 Identities=14% Similarity=0.270 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-----------
Q 028513 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR----------- 142 (208)
Q Consensus 74 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~----------- 142 (208)
+|.++...-...|..+-+ +.|+|+.+.-+.++-..|++ ...+..||...|.|.||.++..||.-.
T Consensus 10 vT~~Er~K~~~qF~~Lkp-~~gfitg~qArnfflqS~LP---~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~ 85 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKP-GQGFITGDQARNFFLQSGLP---TPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGI 85 (1118)
T ss_pred cchHHHHHHHHHHhccCC-CCCccchHhhhhhHHhcCCC---hHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCC
Confidence 455677777777777665 46999999999999888865 778888999999999999999999766
Q ss_pred --------------------------------------------------------------------------------
Q 028513 143 -------------------------------------------------------------------------------- 142 (208)
Q Consensus 143 -------------------------------------------------------------------------------- 142 (208)
T Consensus 86 ~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl 165 (1118)
T KOG1029|consen 86 QLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPL 165 (1118)
T ss_pred cCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred -------------------------------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCC
Q 028513 143 -------------------------------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNG 191 (208)
Q Consensus 143 -------------------------------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~ 191 (208)
.+.+|..+|....|+|+-..-+.+|...+ ++...+..|+..-|.|+
T Consensus 166 ~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~---Lpq~~LA~IW~LsDvd~ 242 (1118)
T KOG1029|consen 166 PHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG---LPQNQLAHIWTLSDVDG 242 (1118)
T ss_pred CCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC---CchhhHhhheeeeccCC
Confidence 88999999999999999999999998866 88899999999999999
Q ss_pred CCceeHHHHHHHHHh
Q 028513 192 DGFVCFEDFSRMMEL 206 (208)
Q Consensus 192 dg~i~~~eF~~~l~~ 206 (208)
||+++-+||+-.|..
T Consensus 243 DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 243 DGKLSADEFILAMHL 257 (1118)
T ss_pred CCcccHHHHHHHHHH
Confidence 999999999976643
No 66
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.57 E-value=1.3e-07 Score=48.67 Aligned_cols=27 Identities=37% Similarity=0.624 Sum_probs=15.8
Q ss_pred HHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 180 CRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 180 ~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|+.+|.|+||+|+++||..+|+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455566666666666666666655543
No 67
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.56 E-value=1e-06 Score=71.93 Aligned_cols=111 Identities=21% Similarity=0.231 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH------------HHHHH
Q 028513 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR------------LKETF 147 (208)
Q Consensus 80 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~------------~~~~F 147 (208)
+....+|...|.|.+|.++..||+.-+. ..+.++-.+|..+|.+.||.|+.+|.-.. +..+|
T Consensus 51 ~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~ 124 (463)
T KOG0036|consen 51 EAAKMLFSAMDANRDGRVDYSEFKRYLD------NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFF 124 (463)
T ss_pred HHHHHHHHhcccCcCCcccHHHHHHHHH------HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHH
Confidence 3456667777777777777777777664 33455667777777777777777766555 66667
Q ss_pred HHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHh------HcCCCCCceeHHHHHH
Q 028513 148 DFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIAL------VDKNGDGFVCFEDFSR 202 (208)
Q Consensus 148 ~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~------~D~~~dg~i~~~eF~~ 202 (208)
+..|+++++.|+.+|+++.+.- .++..+..++.. +|.+.+..|. ++|..
T Consensus 125 e~~d~~g~~~I~~~e~rd~~ll-----~p~s~i~di~~~W~h~~~idigE~~~iP-dg~s~ 179 (463)
T KOG0036|consen 125 EHMDKDGKATIDLEEWRDHLLL-----YPESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSK 179 (463)
T ss_pred HHhccCCCeeeccHHHHhhhhc-----CChhHHHHHHHhhhhheEEEccccccCC-cchHH
Confidence 7777777777777777776622 224444444332 3555666555 54443
No 68
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.53 E-value=4.9e-07 Score=61.22 Aligned_cols=74 Identities=15% Similarity=0.242 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHH
Q 028513 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFF 150 (208)
Q Consensus 73 ~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~ 150 (208)
.+++++...+..+|..+|. ++|.|+..+.+.+|...+++ ...+..+|...|.+++|.++++||+-.++.+....
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~---~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~~~~ 76 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLP---RDVLAQIWNLADIDNDGKLDFEEFAIAMHLINRKL 76 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSS---HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCC---HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHHHHh
Confidence 4566899999999999986 58999999999999988854 89999999999999999999999998877776654
No 69
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.51 E-value=2.1e-07 Score=47.87 Aligned_cols=28 Identities=54% Similarity=0.721 Sum_probs=24.4
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKL 170 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 170 (208)
+..+|+.||.|++|+|+.+||..+|..+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 5689999999999999999999998753
No 70
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.50 E-value=3.5e-07 Score=63.83 Aligned_cols=65 Identities=26% Similarity=0.534 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 76 LDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 76 ~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
+...+.+.+.++.||++++|.|...||+++|..+|-. +++++++.++.-. .|.+|.|+|+.|+..
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGek-l~eeEVe~Llag~-eD~nG~i~YE~fVk~ 148 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEK-LTEEEVEELLAGQ-EDSNGCINYEAFVKH 148 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhh-ccHHHHHHHHccc-cccCCcCcHHHHHHH
Confidence 3566778899999999999999999999999999999 9999999999876 578899999999753
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.49 E-value=1.1e-06 Score=57.71 Aligned_cols=62 Identities=18% Similarity=0.222 Sum_probs=52.4
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHh-----CCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKL-----GDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~-----g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|..|. .+.+.++..||+.+|... + ..-.+..++.++..+|.|+||.|+|.||+.++..
T Consensus 10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~-~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 10 MMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLK-NQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHc-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 677899997 446799999999999653 3 4457888999999999999999999999988754
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.44 E-value=2.6e-06 Score=55.87 Aligned_cols=64 Identities=13% Similarity=0.235 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-----CCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRL-----GADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
..+..|..+|+.+..+ .+.++..||+.++..- ... ..+..++.++..+|.|+||.|+|+||+.+
T Consensus 5 ~ai~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~-~d~~~vd~im~~LD~n~Dg~vdF~EF~~L 73 (91)
T cd05024 5 HSMEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQ-NDPMAVDKIMKDLDDCRDGKVGFQSFFSL 73 (91)
T ss_pred HHHHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCC-CCHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 3567889999999843 5799999999999653 333 56788999999999999999999999988
No 73
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.40 E-value=7.1e-06 Score=71.84 Aligned_cols=129 Identities=15% Similarity=0.265 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH---------HHHH
Q 028513 76 LDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR---------LKET 146 (208)
Q Consensus 76 ~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~---------~~~~ 146 (208)
.....++..+|...|.+.+|.++..+...++..+... +....+..+|...+..+++.+.+.+|+.+ +..+
T Consensus 132 ~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~-l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~ 210 (746)
T KOG0169|consen 132 SRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQ-LSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFL 210 (746)
T ss_pred chHHHHHHHHHHHHccccccccchhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHH
Confidence 3566789999999999999999999999999999888 88999999999999899999999999999 8888
Q ss_pred HHHHCCCCCCceeHHHHHHHHHHhC-CCCCCHHHHHHHHHhHcCC----CCCceeHHHHHHHHHh
Q 028513 147 FDFFDADHDGKITAEELFGVFTKLG-DELCTLDDCRGMIALVDKN----GDGFVCFEDFSRMMEL 206 (208)
Q Consensus 147 F~~~D~~~~G~I~~~e~~~~l~~~g-~~~~s~~~~~~l~~~~D~~----~dg~i~~~eF~~~l~~ 206 (208)
|..+-.+ .++++.+++..+|...+ ...++.+.+..|++.+... ..+.++++.|..+|-.
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 8887544 89999999999999875 3688899999999888443 4566999999999853
No 74
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.39 E-value=2e-06 Score=61.16 Aligned_cols=64 Identities=25% Similarity=0.337 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH
Q 028513 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRL 143 (208)
Q Consensus 79 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 143 (208)
.+.|..+|..||.++.|.|+.+.|+.+|...|.+ ++.++++.+++.+-.+..|.|+|.+|+.++
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr-~~~eEV~~m~r~~p~d~~G~~dy~~~~~~i 163 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDR-FTDEEVDEMYREAPIDKKGNFDYKAFTYII 163 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhccc-CCHHHHHHHHHhCCcccCCceeHHHHHHHH
Confidence 4568999999999999999999999999999999 999999999999988899999999998653
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.37 E-value=2.7e-06 Score=57.61 Aligned_cols=60 Identities=32% Similarity=0.485 Sum_probs=53.3
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
...+|...|. ++|.|+.++...++...+ ++.+.+..|+...|.|++|+++++||+-+|..
T Consensus 12 y~~~F~~l~~-~~g~isg~~a~~~f~~S~---L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 12 YDQIFQSLDP-QDGKISGDQAREFFMKSG---LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHCTSS-STTEEEHHHHHHHHHHTT---SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHhcCC-CCCeEeHHHHHHHHHHcC---CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 4678888884 689999999999999877 99999999999999999999999999988764
No 76
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.33 E-value=7.8e-06 Score=68.34 Aligned_cols=94 Identities=14% Similarity=0.279 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH----------HHH
Q 028513 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRL-GADPPTQEEVKSMLSEVDREGDGYIPLEALISR----------LKE 145 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~----------~~~ 145 (208)
+++..+---|...+.++...++.++|....--+ +.....++.++.+-...|..+||.|+|+||+.+ ...
T Consensus 33 ~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~~~ 112 (694)
T KOG0751|consen 33 KELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALFEV 112 (694)
T ss_pred HHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHHHH
Confidence 344444444455677888899999998755443 333244555555555667788999999999998 888
Q ss_pred HHHHHCCCCCCceeHHHHHHHHHHh
Q 028513 146 TFDFFDADHDGKITAEELFGVFTKL 170 (208)
Q Consensus 146 ~F~~~D~~~~G~I~~~e~~~~l~~~ 170 (208)
+|..||+.++|.++.+++.+++...
T Consensus 113 aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 113 AFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHhcccCCCceehHHHHHHHhcc
Confidence 9999999999999999999998764
No 77
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.31 E-value=1.2e-06 Score=45.93 Aligned_cols=29 Identities=48% Similarity=0.786 Sum_probs=24.1
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHH-HhC
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFT-KLG 171 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~-~~g 171 (208)
++.+|+.||.|++|+|+.+||..+|. .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56789999999999999999999998 465
No 78
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.31 E-value=4e-06 Score=69.77 Aligned_cols=49 Identities=33% Similarity=0.501 Sum_probs=43.4
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
+..+|+.||.+++|.|+.+||.. ++.+|..+|.|+||.|+++||...+.
T Consensus 336 l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 336 AQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 88999999999999999999842 46789999999999999999998875
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.21 E-value=2.5e-06 Score=44.61 Aligned_cols=30 Identities=43% Similarity=0.655 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHH-HhC
Q 028513 81 ELVQACKLLDRDNDGVVLRSELEALLI-RLG 110 (208)
Q Consensus 81 ~l~~~F~~~D~~~~g~i~~~e~~~~l~-~~~ 110 (208)
+++.+|..+|.|++|.|+.+||..+|. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 565
No 80
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.20 E-value=7.5e-06 Score=68.42 Aligned_cols=122 Identities=12% Similarity=0.138 Sum_probs=81.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC--CCHHHHHHHHHhhccCCCCcccHHHHHHH--------HHHHHHHHC
Q 028513 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADP--PTQEEVKSMLSEVDREGDGYIPLEALISR--------LKETFDFFD 151 (208)
Q Consensus 82 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~d~~~~g~i~~~eF~~~--------~~~~F~~~D 151 (208)
...+|..||+.++|.++.+++..++.+..+.. +-....+.+-..+..+..-.++|.+|.++ ..++|+..|
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d 189 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKD 189 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888888888888877664320 11111222222333344556788888877 788999999
Q ss_pred CCCCCceeHHHHHHHHHHhCCCCCCHHHH-HHHHHhHcCCCCCceeHHHHHHHH
Q 028513 152 ADHDGKITAEELFGVFTKLGDELCTLDDC-RGMIALVDKNGDGFVCFEDFSRMM 204 (208)
Q Consensus 152 ~~~~G~I~~~e~~~~l~~~g~~~~s~~~~-~~l~~~~D~~~dg~i~~~eF~~~l 204 (208)
..++|+|+.-+|++++.... .++...-+ ..++.....+...++++-.|..+-
T Consensus 190 ~~~ng~is~Ldfq~imvt~~-~h~lt~~v~~nlv~vagg~~~H~vSf~yf~afn 242 (694)
T KOG0751|consen 190 KAKNGFISVLDFQDIMVTIR-IHLLTPFVEENLVSVAGGNDSHQVSFSYFNAFN 242 (694)
T ss_pred ccCCCeeeeechHhhhhhhh-hhcCCHHHhhhhhhhcCCCCccccchHHHHHHH
Confidence 99999999999999999887 44444444 445555555556678777776543
No 81
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.20 E-value=2.3e-06 Score=67.87 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=83.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-------------HHHHHHHHCCCCCCcee
Q 028513 93 NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR-------------LKETFDFFDADHDGKIT 159 (208)
Q Consensus 93 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-------------~~~~F~~~D~~~~G~I~ 159 (208)
+.+.|-..||..-++ .+ . ...+..+|..||.+++|.++|.|.+.. ++.+|++|+.+.||.+.
T Consensus 240 kg~~igi~efa~~l~---vp-v-sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~g 314 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLR---VP-V-SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISG 314 (412)
T ss_pred cCCCcceeEeeeeee---cc-h-hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccc
Confidence 445555555544432 11 2 256777899999999999999998877 99999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 160 AEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 160 ~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
.++|..+|+..- .+.+-.+..+|...+...+|+|+|++|.+++.
T Consensus 315 e~~ls~ilq~~l--gv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 315 EHILSLILQVVL--GVEVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred hHHHHHHHHHhc--CcceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 999999998652 25555577789999999999999999998875
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.12 E-value=1.5e-05 Score=66.34 Aligned_cols=59 Identities=31% Similarity=0.525 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHh
Q 028513 110 GADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFFDADHDGKITAEELFGVFTKL 170 (208)
Q Consensus 110 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 170 (208)
|.. ....++..+|..+|.+++|.|+++||+. +..+|..+|.|++|.|+.+||..++...
T Consensus 328 ~~~-~~~~~l~~aF~~~D~dgdG~Is~~E~~~-~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGE-AFTHAAQEIFRLYDLDGDGFITREEWLG-SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccC-hhhHHHHHHHHHhCCCCCCcCcHHHHHH-HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 555 7788999999999999999999999964 6889999999999999999999998754
No 83
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.11 E-value=5.1e-06 Score=41.15 Aligned_cols=23 Identities=48% Similarity=0.761 Sum_probs=14.0
Q ss_pred HHHHHHHCCCCCCceeHHHHHHH
Q 028513 144 KETFDFFDADHDGKITAEELFGV 166 (208)
Q Consensus 144 ~~~F~~~D~~~~G~I~~~e~~~~ 166 (208)
..+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 44566666666666666666554
No 84
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.01 E-value=3.7e-05 Score=63.91 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=92.8
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHH--HHHhCC---C--------CCCHHHHHHH---HHhhccCCCCcccHHHHHHH--
Q 028513 81 ELVQACKLLDRDNDGVVLRSELEAL--LIRLGA---D--------PPTQEEVKSM---LSEVDREGDGYIPLEALISR-- 142 (208)
Q Consensus 81 ~l~~~F~~~D~~~~g~i~~~e~~~~--l~~~~~---~--------~~~~~~~~~~---~~~~d~~~~g~i~~~eF~~~-- 142 (208)
.++++|..+++-+.|.|+..|+... +..+.. . -.+-+....+ |..+|.|.+|.|+-++...+
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 4678899999999999999998763 222211 0 0111122223 66789999999999998888
Q ss_pred -------HHHHHH----HHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 143 -------LKETFD----FFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 143 -------~~~~F~----~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
+.++|. .+=.-.+|.++.++|..++.++. ..-++.-++..|+.+|.+++|.|+..|..-+..
T Consensus 306 ~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e-~k~t~~SleYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 306 HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE-DKDTPASLEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-cCCCccchhhheeeeeccCCCcccHHHHHHHHH
Confidence 778887 23345788899999999998887 677778899999999999999999988776554
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.98 E-value=4e-05 Score=44.35 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=41.1
Q ss_pred eeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHhc
Q 028513 158 ITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQ 207 (208)
Q Consensus 158 I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~~ 207 (208)
++..|+..+|+.+. ..+++.-+..+|+.+|.+++|.+.-+||..+++.+
T Consensus 2 msf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 67899999999999 99999999999999999999999999999998764
No 86
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.97 E-value=4.3e-05 Score=54.00 Aligned_cols=87 Identities=20% Similarity=0.319 Sum_probs=68.1
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-----------------HHHH
Q 028513 84 QACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR-----------------LKET 146 (208)
Q Consensus 84 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-----------------~~~~ 146 (208)
++...|..||.|.++.++|..++..+.-..+.+..+.-.|..||-|+++.|.-++.... ...+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 34445567999999999999998776443233444555678899999999988887766 7778
Q ss_pred HHHHCCCCCCceeHHHHHHHHHHh
Q 028513 147 FDFFDADHDGKITAEELFGVFTKL 170 (208)
Q Consensus 147 F~~~D~~~~G~I~~~e~~~~l~~~ 170 (208)
.+.-|.||||.|+..||..++...
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhC
Confidence 888899999999999999987543
No 87
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.97 E-value=6.6e-05 Score=64.33 Aligned_cols=137 Identities=23% Similarity=0.354 Sum_probs=97.2
Q ss_pred cchhhhcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhcc---CC--CCcccHHHHHH
Q 028513 67 WSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDR---EG--DGYIPLEALIS 141 (208)
Q Consensus 67 ~~~~~~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~---~~--~g~i~~~eF~~ 141 (208)
|....++|.+..+..|.++|...|.|.||.++-.|+..+-...-..++...++..+-...+. ++ +..++..-|+.
T Consensus 182 yda~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLf 261 (625)
T KOG1707|consen 182 YDAEEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLF 261 (625)
T ss_pred cccccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHH
Confidence 44556788899999999999999999999999999998776543333777666655444322 22 34455555655
Q ss_pred H------------------------------------------------------HHHHHHHHCCCCCCceeHHHHHHHH
Q 028513 142 R------------------------------------------------------LKETFDFFDADHDGKITAEELFGVF 167 (208)
Q Consensus 142 ~------------------------------------------------------~~~~F~~~D~~~~G~I~~~e~~~~l 167 (208)
+ +..+|..||.|+||.+..+||..++
T Consensus 262 L~~lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF 341 (625)
T KOG1707|consen 262 LNTLFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLF 341 (625)
T ss_pred HHHHHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHh
Confidence 5 8999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 168 TKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 168 ~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
...+..+....-.. ...-.+..|.++|+-|+..+..
T Consensus 342 ~~~P~~pW~~~~~~---~~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 342 STAPGSPWTSSPYK---DSTVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred hhCCCCCCCCCccc---ccceecccceeehhhHHHHHHH
Confidence 88752222110000 0111347889999999877654
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.97 E-value=3.4e-06 Score=58.13 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=44.0
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 203 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~ 203 (208)
+...|..+|.|+||.|+..|+..+...+ ...+.-+..+++..|.|+||.|++.||..+
T Consensus 56 ~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 56 VHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 8889999999999999999999886543 244556888999999999999999999864
No 89
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.95 E-value=4.2e-05 Score=64.48 Aligned_cols=73 Identities=25% Similarity=0.325 Sum_probs=64.2
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC--CCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 69 DMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADP--PTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 69 ~~~~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
....++|++++..+.+.|..+| |++|+|+..|+..++...+... ...++++.++...+.+.+|.|+|++|+..
T Consensus 8 ~~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~ 82 (627)
T KOG0046|consen 8 WLQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGI 82 (627)
T ss_pred hhcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHH
Confidence 3456788999999999999999 9999999999999999886630 23788999999999999999999999875
No 90
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.94 E-value=1.8e-05 Score=39.10 Aligned_cols=25 Identities=32% Similarity=0.724 Sum_probs=22.3
Q ss_pred HHHHHHhHcCCCCCceeHHHHHHHH
Q 028513 180 CRGMIALVDKNGDGFVCFEDFSRMM 204 (208)
Q Consensus 180 ~~~l~~~~D~~~dg~i~~~eF~~~l 204 (208)
++.+|..+|.|+||.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999999864
No 91
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.00011 Score=49.72 Aligned_cols=85 Identities=16% Similarity=0.281 Sum_probs=56.8
Q ss_pred CCCCcchhhhccCcchhhhcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC------C--C-CCHHHHHHH--
Q 028513 54 GTPTSVLHEISGDWSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGA------D--P-PTQEEVKSM-- 122 (208)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~------~--~-~~~~~~~~~-- 122 (208)
.........+...... ...||+++.+ ..+|...|-|+++.|+--|+..++..... . | +++.++..+
T Consensus 44 hDeeHIkeHLegki~~-~a~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD 120 (144)
T KOG4065|consen 44 HDEEHIKEHLEGKIEK-VAKMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLID 120 (144)
T ss_pred ccHHHHHHHHhcccch-hhhCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHH
Confidence 3344455555555444 6678888875 57899999999999999999999986622 1 1 334454444
Q ss_pred --HHhhccCCCCcccHHHHHH
Q 028513 123 --LSEVDREGDGYIPLEALIS 141 (208)
Q Consensus 123 --~~~~d~~~~g~i~~~eF~~ 141 (208)
+..-|.|+||.|+|.||+.
T Consensus 121 ~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 121 AVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred HHhcccccCCCceeeHHHHHh
Confidence 3444667777777777753
No 92
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=7e-05 Score=50.70 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=45.7
Q ss_pred HHHHHHHCCCCCCceeHHHHHHHHHHh------CC---CCCCHHHHHHH----HHhHcCCCCCceeHHHHHHHH
Q 028513 144 KETFDFFDADHDGKITAEELFGVFTKL------GD---ELCTLDDCRGM----IALVDKNGDGFVCFEDFSRMM 204 (208)
Q Consensus 144 ~~~F~~~D~~~~G~I~~~e~~~~l~~~------g~---~~~s~~~~~~l----~~~~D~~~dg~i~~~eF~~~l 204 (208)
-..|.+.|.|++|+|+--|+..++... |+ .-.++.++..+ ++.-|.|+||.|+|-||++..
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 346888999999999999999988753 21 23356665554 555688999999999998753
No 93
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.81 E-value=6.9e-05 Score=43.37 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=35.7
Q ss_pred cccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 96 VVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 96 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
+++..|++.+|+.++.. +.+..+..+|..+|.+++|.++.+||..+
T Consensus 1 kmsf~Evk~lLk~~NI~-~~~~yA~~LFq~~D~s~~g~Le~~Ef~~F 46 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIE-MDDEYARQLFQECDKSQSGRLEGEEFEEF 46 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHH
T ss_pred CCCHHHHHHHHHHHccC-cCHHHHHHHHHHhcccCCCCccHHHHHHH
Confidence 36788999999999998 99999999999999988999998888765
No 94
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.73 E-value=0.00016 Score=59.99 Aligned_cols=69 Identities=23% Similarity=0.369 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC---CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHCC
Q 028513 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGAD---PPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFFDA 152 (208)
Q Consensus 80 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~D~ 152 (208)
..+..+|+..|.|+.|.|+.+||+.+..-++.+ +.+..++..+.+.+|-|+||.|++.|| .++|++.|.
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEf----LeAFrlvdr 618 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEF----LEAFRLVDR 618 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHH----HHHHhhhcc
Confidence 346778999999999999999999887765322 267788888888888888899998887 456766664
No 95
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.67 E-value=1.3e-05 Score=55.25 Aligned_cols=62 Identities=29% Similarity=0.379 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHH
Q 028513 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALIS 141 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 141 (208)
.....+.=.|..+|.|+||.|+..|+..+...+ . +.+.-+..++..+|.|+||.|++.||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~-~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--M-PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--S-TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--h-hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 455567777999999999999999998887655 2 4566677888888888888888888864
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.61 E-value=0.0003 Score=45.59 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=53.1
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCC-CCCHHHHHHHHHhHcCC----CCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDE-LCTLDDCRGMIALVDKN----GDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~-~~s~~~~~~l~~~~D~~----~dg~i~~~eF~~~l~~ 206 (208)
+..+|..|-. +.+.|+.++|..+|...... .++.+++..++..+..+ ..+.+++++|..+|..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5678999955 78999999999999877534 67999999999999665 4789999999999864
No 97
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.55 E-value=0.00023 Score=56.76 Aligned_cols=95 Identities=18% Similarity=0.101 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-----------HHH
Q 028513 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR-----------LKE 145 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-----------~~~ 145 (208)
.....+...|..||.+++|.++..|-...+.-+..++.+...++-.|..|+.+.||.+.-.+|..+ +..
T Consensus 256 pvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~ 335 (412)
T KOG4666|consen 256 PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPV 335 (412)
T ss_pred chhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccc
Confidence 344678899999999999999999988888877666578888999999999999999999888777 778
Q ss_pred HHHHHCCCCCCceeHHHHHHHHHHhC
Q 028513 146 TFDFFDADHDGKITAEELFGVFTKLG 171 (208)
Q Consensus 146 ~F~~~D~~~~G~I~~~e~~~~l~~~g 171 (208)
.|..++...+|+|+.++|+.++...+
T Consensus 336 lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 336 LFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred cchhhhcccCcceeHHHHHHHHHhCc
Confidence 89999999999999999999987665
No 98
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.45 E-value=0.00043 Score=58.58 Aligned_cols=70 Identities=30% Similarity=0.430 Sum_probs=57.4
Q ss_pred ccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHhCC--CCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 134 IPLEALISRLKETFDFFDADHDGKITAEELFGVFTKLGD--ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 134 i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~--~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
++-+|... +...|...| +++|+|+..|+..++...+. -....+++.+++...+.|.+|.|+|++|+..+.
T Consensus 13 ~tq~El~~-l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 13 LTQEELRE-LKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred ccHHHHHH-HHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 44444322 788999999 99999999999999998761 234588999999999999999999999999554
No 99
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.39 E-value=0.0014 Score=61.65 Aligned_cols=77 Identities=25% Similarity=0.472 Sum_probs=62.0
Q ss_pred ccCCCCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCC--C-----HHHHHHHHHhHcCCCCCceeHHH
Q 028513 127 DREGDGYIPLEALISRLKETFDFFDADHDGKITAEELFGVFTKLGDELC--T-----LDDCRGMIALVDKNGDGFVCFED 199 (208)
Q Consensus 127 d~~~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~--s-----~~~~~~l~~~~D~~~dg~i~~~e 199 (208)
+.|.+| |+-+.... +.-+|+.||.+.+|.++..+|.-.|+.+| +.+ - +.++.+++...|++.+|+|+..+
T Consensus 2241 arn~~G-VtEe~L~E-Fs~~fkhFDkek~G~Ldhq~F~sCLrslg-Y~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~d 2317 (2399)
T KOG0040|consen 2241 ARNHNG-VTEEQLKE-FSMMFKHFDKEKNGRLDHQHFKSCLRSLG-YDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQD 2317 (2399)
T ss_pred hhccCC-CCHHHHHH-HHHHHHHhchhhccCCcHHHHHHHHHhcC-CCCcccccCCCChhHHHHHHhcCCCCcCcccHHH
Confidence 344444 44443222 47799999999999999999999999999 555 2 33799999999999999999999
Q ss_pred HHHHHHh
Q 028513 200 FSRMMEL 206 (208)
Q Consensus 200 F~~~l~~ 206 (208)
|..||-.
T Consensus 2318 Y~afmi~ 2324 (2399)
T KOG0040|consen 2318 YMAFMIS 2324 (2399)
T ss_pred HHHHHHh
Confidence 9999864
No 100
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.32 E-value=0.0081 Score=44.04 Aligned_cols=118 Identities=19% Similarity=0.299 Sum_probs=82.8
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHH-HHhh-----------------------------cc-
Q 028513 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSM-LSEV-----------------------------DR- 128 (208)
Q Consensus 80 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~-~~~~-----------------------------d~- 128 (208)
-.|++...-||.|+||.|..-|-...++.+|+. +.-..+-.+ +... |.
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~-~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFG-ILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCC-HHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 347777888999999999999999999999987 333222221 1110 10
Q ss_pred --CCCCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHhCC------CCCCHHHHHHHHHhHcCCCCCceeHHHH
Q 028513 129 --EGDGYIPLEALISRLKETFDFFDADHDGKITAEELFGVFTKLGD------ELCTLDDCRGMIALVDKNGDGFVCFEDF 200 (208)
Q Consensus 129 --~~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~------~~~s~~~~~~l~~~~D~~~dg~i~~~eF 200 (208)
|.+|...-+. +.++|..|+..+.+.||..|+.+++..... -..+.-|...++..+ .+.+|.|..|..
T Consensus 86 ~YD~eGrFvp~k----Fe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~i 160 (174)
T PF05042_consen 86 AYDTEGRFVPQK----FEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDI 160 (174)
T ss_pred ccccCCcCCHHH----HHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHH
Confidence 1234444444 689999999988999999999999986421 233455666666666 678999998887
Q ss_pred HHH
Q 028513 201 SRM 203 (208)
Q Consensus 201 ~~~ 203 (208)
..+
T Consensus 161 R~v 163 (174)
T PF05042_consen 161 RGV 163 (174)
T ss_pred hhh
Confidence 654
No 101
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0013 Score=58.17 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 75 SLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 75 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
.......++.+|+.+|+-..|+++-..-+.+|...+++ ...+..||...|.|+||.++-+||+-.
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lp---q~~LA~IW~LsDvd~DGkL~~dEfila 254 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLP---QNQLAHIWTLSDVDGDGKLSADEFILA 254 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCc---hhhHhhheeeeccCCCCcccHHHHHHH
Confidence 34566678999999999999999999999999877754 788889999999999999999999643
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.05 E-value=0.001 Score=32.83 Aligned_cols=25 Identities=36% Similarity=0.763 Sum_probs=12.6
Q ss_pred HHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 181 RGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 181 ~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
..+|..+|.+++|.|++.+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3444555555555555555555443
No 103
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.008 Score=50.85 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 73 ~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
++++|+.+.+...|+.+.+|.+|+|.-.--+.++.+..+ .-.++.-||...|.+.||.+++.|||..
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSkl---pi~ELshIWeLsD~d~DGALtL~EFcAA 290 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKL---PIEELSHIWELSDVDRDGALTLSEFCAA 290 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccC---chHHHHHHHhhcccCccccccHHHHHhh
Confidence 578899999999999999999999999999999987764 4788999999999999999999999865
No 104
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.02 E-value=0.0015 Score=32.20 Aligned_cols=27 Identities=48% Similarity=0.746 Sum_probs=22.2
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTK 169 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~ 169 (208)
+..+|+.+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 457888899988899999998888764
No 105
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.001 Score=60.92 Aligned_cols=126 Identities=17% Similarity=0.286 Sum_probs=104.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH----------
Q 028513 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR---------- 142 (208)
Q Consensus 73 ~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~---------- 142 (208)
.+++.+...+..+|..+.++ +|.++....+.+|..-. +....+..+|...|.+.+|.+++.||...
T Consensus 122 ~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~---Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 122 AITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK---LPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred CCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC---CChhhhccccccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 35567777788888888876 78888888888876554 44677778888888888888888888766
Q ss_pred --------------------------------------------------------------------------------
Q 028513 143 -------------------------------------------------------------------------------- 142 (208)
Q Consensus 143 -------------------------------------------------------------------------------- 142 (208)
T Consensus 198 ~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~v 277 (847)
T KOG0998|consen 198 NSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKV 277 (847)
T ss_pred ccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCccc
Confidence
Q ss_pred -------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 143 -------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 143 -------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
+..+|...|.+.+|.|+-.+.+..+...| +....+..++...|....|.+++.+|+-.+.
T Consensus 278 sp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g---l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG---LSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred ChHHHHHHHHHHHhccccCCCcccccccccccccCC---CChhhhhhhhhhcchhccCcccccccchhhh
Confidence 56689999999999999999999998866 8889999999999999999999999886654
No 106
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.49 E-value=0.0086 Score=46.25 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=39.3
Q ss_pred HHHHHHHHhhccCCCCcccHHHHHHH---------------HHHHHHHHCCCCCCceeHHHHHHHHHH
Q 028513 117 EEVKSMLSEVDREGDGYIPLEALISR---------------LKETFDFFDADHDGKITAEELFGVFTK 169 (208)
Q Consensus 117 ~~~~~~~~~~d~~~~g~i~~~eF~~~---------------~~~~F~~~D~~~~G~I~~~e~~~~l~~ 169 (208)
..+..+|...|.+.++.|+-.|..+. -...|+..|+||+|.|+-+|+.--+.+
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 34566777888888888888887766 445677788888888888888765543
No 107
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.48 E-value=0.043 Score=49.99 Aligned_cols=93 Identities=20% Similarity=0.162 Sum_probs=71.7
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCH-H----HHHHHHHhhccCCCCcccHHHHHHH---
Q 028513 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQ-E----EVKSMLSEVDREGDGYIPLEALISR--- 142 (208)
Q Consensus 71 ~~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~-~----~~~~~~~~~d~~~~g~i~~~eF~~~--- 142 (208)
....++....+|+..|..+|+...|-++.++|..+|..+|+. .-. + +...++...|.+..|.++|.+|...
T Consensus 738 sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~-~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 738 SKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYN-TEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred ccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcc-cchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 445566888999999999999999999999999999999987 443 2 2333444555566689999999998
Q ss_pred ----------HHHHHHHHCCCCCCceeHHHHHH
Q 028513 143 ----------LKETFDFFDADHDGKITAEELFG 165 (208)
Q Consensus 143 ----------~~~~F~~~D~~~~G~I~~~e~~~ 165 (208)
+..+|+.+-.+.. +|..+||..
T Consensus 817 ~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 817 EYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 6667777755544 688888777
No 108
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.0086 Score=50.66 Aligned_cols=62 Identities=21% Similarity=0.328 Sum_probs=56.5
Q ss_pred HHHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 142 RLKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 142 ~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+....|+.+-.|-.|+|+..--+.++.+.. +.-.|+..|+...|.|.||.+++.||+..+.+
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKSk---lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKSK---LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhcc---CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 378889999999999999999999998855 88899999999999999999999999998864
No 109
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.13 E-value=0.0079 Score=48.61 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=39.6
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhC--CCCCCHHHHHHHHHhhccCCCCcccHHHHHHH--------HHHHHHHH
Q 028513 81 ELVQACKLLDRDNDGVVLRSELEALLIRLG--ADPPTQEEVKSMLSEVDREGDGYIPLEALISR--------LKETFDFF 150 (208)
Q Consensus 81 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~--------~~~~F~~~ 150 (208)
+|+.+|..+-.+..+......+...-..+. +.|.-..++--||..+|.|.|+.++..|.-.+ ++..|..+
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfnsC 291 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNSC 291 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhhh
Confidence 566666666555444333333222211111 11133344444455555555555555444444 44444444
Q ss_pred CCCCCCceeHHHHHHHHHH
Q 028513 151 DADHDGKITAEELFGVFTK 169 (208)
Q Consensus 151 D~~~~G~I~~~e~~~~l~~ 169 (208)
|...||.|+..|+-..+..
T Consensus 292 D~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 292 DTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred cccccCccccchhhhhhcc
Confidence 4444555554444444433
No 110
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=95.94 E-value=0.031 Score=44.68 Aligned_cols=62 Identities=32% Similarity=0.397 Sum_probs=45.5
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHh----CCCCCCHHHH-----------HHHHHhHcCCCCCceeHHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKL----GDELCTLDDC-----------RGMIALVDKNGDGFVCFEDFSRMM 204 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~----g~~~~s~~~~-----------~~l~~~~D~~~dg~i~~~eF~~~l 204 (208)
-...|.++|.|+||+++..|+..++... ....-.++++ +.+++..|.|.|..|+++||++.-
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 4566788899999999999999887642 2111122222 456788899999999999999754
No 111
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.92 E-value=0.038 Score=35.60 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHHhhccC----CCCcccHHHHHHH
Q 028513 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGAD-PPTQEEVKSMLSEVDRE----GDGYIPLEALISR 142 (208)
Q Consensus 81 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~ 142 (208)
+|..+|..+-. +.+.|+.++|..+|..-... ..+...+..++..+..+ ..+.++++.|..+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~f 66 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRF 66 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHH
Confidence 36788999965 78999999999999876332 25788888888887543 2456666666443
No 112
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.87 E-value=0.039 Score=40.50 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHhHcCCCCCceeHHHHHHHHHhcC
Q 028513 175 CTLDDCRGMIALVDKNGDGFVCFEDFSRMMELQR 208 (208)
Q Consensus 175 ~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~~~ 208 (208)
+-+..+++||..++..+.+.+++.|...+++.+|
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 4567789999999988888899999999988765
No 113
>PLN02952 phosphoinositide phospholipase C
Probab=95.76 E-value=0.086 Score=46.51 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=41.8
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCC-CCCHHHHHHHHHhHc-------CCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDE-LCTLDDCRGMIALVD-------KNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~-~~s~~~~~~l~~~~D-------~~~dg~i~~~eF~~~l~~ 206 (208)
+..+|..|-. +.+.|+.++|..+|...+.. ..+.+++..|+..+- ....+.++++.|..+|..
T Consensus 40 i~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 40 VKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred HHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 5667777743 33678888888888877533 466667776665441 112345899999999853
No 114
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.71 E-value=0.1 Score=46.66 Aligned_cols=87 Identities=17% Similarity=0.334 Sum_probs=71.0
Q ss_pred CHHHHHHHHHhhccCCCCcccHHHHHHH------------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHH
Q 028513 115 TQEEVKSMLSEVDREGDGYIPLEALISR------------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRG 182 (208)
Q Consensus 115 ~~~~~~~~~~~~d~~~~g~i~~~eF~~~------------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~ 182 (208)
....+..+|...|++++|.+++.+-..+ +...|+..|..++|.+...++..+..... ..+ ++..
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~---~rp-ev~~ 209 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELT---KRP-EVYF 209 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhc---cCc-hHHH
Confidence 3456778899999999999999988777 88889988989999999999999988876 233 7777
Q ss_pred HHHhHcCCCCCceeHHHHHHHHHh
Q 028513 183 MIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 183 l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+|..+ .++.+.++.+++..+|..
T Consensus 210 ~f~~~-s~~~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 210 LFVQY-SHGKEYLSTDDLLRFLEE 232 (746)
T ss_pred HHHHH-hCCCCccCHHHHHHHHHH
Confidence 87777 344778888888887764
No 115
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=0.01 Score=54.50 Aligned_cols=120 Identities=19% Similarity=0.269 Sum_probs=101.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-----------------
Q 028513 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR----------------- 142 (208)
Q Consensus 80 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~----------------- 142 (208)
..+..+|+.+|..++|.|+..+...++..-|+. ...+-.+|...|..+.|.++..+|...
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~---~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~ 87 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSGLP---DQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKK 87 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccccc---hhhhhccccccccccCCccccccccccchHhhhhhcccCcCccc
Confidence 457788999999999999999999999877754 777888899999888899999988776
Q ss_pred -------------------------------------------HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHH
Q 028513 143 -------------------------------------------LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDD 179 (208)
Q Consensus 143 -------------------------------------------~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~ 179 (208)
...+|+-+... .|.++....+.+|..-+ +.-+.
T Consensus 88 ~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~---Lp~~~ 163 (847)
T KOG0998|consen 88 VLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK---LPSDV 163 (847)
T ss_pred cccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC---CChhh
Confidence 55567777654 78999988888887755 88888
Q ss_pred HHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 180 CRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 180 ~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+..++...|.|.+|.++..+|.-.|..
T Consensus 164 l~~iw~l~d~d~~g~Ld~~ef~~am~l 190 (847)
T KOG0998|consen 164 LGRIWELSDIDKDGNLDRDEFAVAMHL 190 (847)
T ss_pred hccccccccccccCCCChhhhhhhhhH
Confidence 899999999999999999999987764
No 116
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.46 E-value=0.029 Score=53.00 Aligned_cols=61 Identities=16% Similarity=0.324 Sum_probs=52.7
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
-...|+.||+||.|.|+..+|..+|... .+.+..+++.++.-...|.+..++|++|++-+.
T Consensus 4059 ssdtfkeydpdgkgiiskkdf~kame~~--k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4059 SSDTFKEYDPDGKGIISKKDFHKAMEGH--KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccccchhcCCCCCccccHHHHHHHHhcc--ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 4567899999999999999999998654 366788899999999999999999999998653
No 117
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.17 E-value=0.059 Score=46.64 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=61.8
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 72 ~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
-.|+++++......|..+|.|+.|.+..++...+|+..+.. .++..++.+....|.+-+|.+...||.++
T Consensus 585 i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~-~d~~~~~~~l~ea~~~~~g~v~l~e~~q~ 654 (680)
T KOG0042|consen 585 IKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVG-WDEDRLHEELQEADENLNGFVELREFLQL 654 (680)
T ss_pred cccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhcceeeHHHHHHH
Confidence 35788999999999999999999999999999999998866 88999999999988888888888887544
No 118
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.00 E-value=0.049 Score=47.13 Aligned_cols=63 Identities=24% Similarity=0.339 Sum_probs=58.8
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
.+..|..+|.|+.|+++..+..++|+..+ .+++++.++.+++..|.+-+|.+...||.+++..
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 66789999999999999999999999999 9999999999999999999999999999988753
No 119
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.95 E-value=0.069 Score=43.37 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=47.4
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+-++|..+|.+.||.|+..||+.+- ..-.+.-+..+|+..|...||.|+-.||+.++..
T Consensus 252 ~gWMFnklD~N~Dl~Ld~sEl~~I~-----ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 252 LGWMFNKLDTNYDLLLDQSELRAIE-----LDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhccccccccccCHHHhhhhh-----ccCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 7888888888888888888888764 3345667788888888888888888888877654
No 120
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.83 E-value=0.25 Score=35.92 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=48.4
Q ss_pred HHHHHHHH---CCCCCCceeHHHHHHHHHHhCC--CCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFF---DADHDGKITAEELFGVFTKLGD--ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~---D~~~~G~I~~~e~~~~l~~~g~--~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
|+.+|..| -..+...++...|..+|+..+- -.++..+++.+|..+-..+...|+|++|+.+|..
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 34566666 3456678999999999998752 4689999999999986666667999999999875
No 121
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.75 E-value=0.61 Score=33.91 Aligned_cols=84 Identities=23% Similarity=0.222 Sum_probs=60.6
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCC--CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHCCCCCCceeHH
Q 028513 84 QACKLLDRDNDGVVLRSELEALLIRLGAD--PPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFFDADHDGKITAE 161 (208)
Q Consensus 84 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~ 161 (208)
..|..|-..+...|+...|..+++..++- .++...++.+|..+-..+...|+|++|...|..+-...-.+.+ +.+
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~---~~~ 82 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKS---SAE 82 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCT---HHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhcccc---cHH
Confidence 33333444556789999999999987552 2678889999999866666789999999998888877765544 777
Q ss_pred HHHHHHHHh
Q 028513 162 ELFGVFTKL 170 (208)
Q Consensus 162 e~~~~l~~~ 170 (208)
++...|...
T Consensus 83 ~~~~kl~~~ 91 (154)
T PF05517_consen 83 ELKEKLTAG 91 (154)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcc
Confidence 777777443
No 122
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.62 E-value=0.067 Score=42.83 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=21.4
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHH
Q 028513 83 VQACKLLDRDNDGVVLRSELEALLIR 108 (208)
Q Consensus 83 ~~~F~~~D~~~~g~i~~~e~~~~l~~ 108 (208)
...|...|.|+||+++..|+..++..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtk 272 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTK 272 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHH
Confidence 34678889999999999999888753
No 123
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.45 E-value=0.055 Score=33.66 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCC-------CCceeHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNG-------DGFVCFEDFSRM 203 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~-------dg~i~~~eF~~~ 203 (208)
+..+|+.+ .++.++||.+||++.|..-. ++.++..+..-. -|.++|..|...
T Consensus 8 v~~aFr~l-A~~KpyVT~~dLr~~l~pe~--------aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 8 VEEAFRAL-AGGKPYVTEEDLRRSLTPEQ--------AEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHH-CTSSSCEEHHHHHHHS-CCC--------HHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHH-HcCCCcccHHHHHHHcCcHH--------HHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 67899999 78889999999999864433 466666654332 267999999753
No 124
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.04 E-value=0.022 Score=45.87 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
++..|.++|.|.++.|...|+.-+-.-+-...-...-...+++..|.|+|.+|++.||..+|.
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 677888888888888888887655433220112233456778888889998899999888775
No 125
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=93.78 E-value=0.97 Score=41.49 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=81.1
Q ss_pred HhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc--cCCCCcc-----cHHHHHHH---------HHHHHHHHC
Q 028513 88 LLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD--REGDGYI-----PLEALISR---------LKETFDFFD 151 (208)
Q Consensus 88 ~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d--~~~~g~i-----~~~eF~~~---------~~~~F~~~D 151 (208)
.+..|..|.|....+.+++..- -.+..++..+..+. .+.+..| +|+.|..+ +..+|..+.
T Consensus 156 kmqvn~~grip~knI~k~F~~~----k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~ 231 (1189)
T KOG1265|consen 156 KMQVNFEGRIPVKNIIKTFSAD----KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKIS 231 (1189)
T ss_pred hhcccccccccHHHHHHHhhcC----CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhc
Confidence 3456677888888887776432 11244444444332 1222333 44444444 999999999
Q ss_pred CCCCCceeHHHHHHHHHHhCC---------CCCCHHHHHHHHHhHcCCC----CCceeHHHHHHHHHh
Q 028513 152 ADHDGKITAEELFGVFTKLGD---------ELCTLDDCRGMIALVDKNG----DGFVCFEDFSRMMEL 206 (208)
Q Consensus 152 ~~~~G~I~~~e~~~~l~~~g~---------~~~s~~~~~~l~~~~D~~~----dg~i~~~eF~~~l~~ 206 (208)
.++.-++|.++|..+|..-.+ ..+.+..+..|+..|..|. .|+++-+-|+.+|..
T Consensus 232 ~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 232 GKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred cCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 998899999999999976432 5677888999999998774 789999999998854
No 126
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=92.59 E-value=0.036 Score=44.62 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=29.4
Q ss_pred HHHhhccCCCCcccHHHHHHH-------------HHHHHHHHCCCCCCceeHHHHHHHHHH
Q 028513 122 MLSEVDREGDGYIPLEALISR-------------LKETFDFFDADHDGKITAEELFGVFTK 169 (208)
Q Consensus 122 ~~~~~d~~~~g~i~~~eF~~~-------------~~~~F~~~D~~~~G~I~~~e~~~~l~~ 169 (208)
.|..+|.|.++.|+-.||..+ .+.+|+.+|.|+|-.|++.|++..|..
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 344455555555554444444 566677777777777777777777654
No 127
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.46 E-value=0.32 Score=44.56 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=53.7
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCH-----HHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTL-----DDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~-----~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
++..|..+|....|.++.+++...|..+| ...-+ .++..|+...|.+.-|+|++.+|.++|.+
T Consensus 749 lrAle~~~~~~d~~aa~~e~~~~~Lmslg-~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 749 LRALENEQDKIDGGAASPEELLRCLMSLG-YNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHhHHHHhhcccCCHHHHHHHHHhcC-cccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 99999999999999999999999999999 65553 34566677777778899999999999875
No 128
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=91.78 E-value=0.3 Score=46.75 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=48.2
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 85 ACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 85 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
.|..+|+||.|.|++.+|.+++..- ...+..+++.++.-...|.+..++|++|+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~--k~ytqse~dfllscae~dend~~~y~dfv~r 4117 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH--KHYTQSEIDFLLSCAEADENDMFDYEDFVDR 4117 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc--ccchhHHHHHHHHhhccCccccccHHHHHHH
Confidence 4577899999999999999998643 3377889999988888899999999999987
No 129
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=91.13 E-value=0.3 Score=42.95 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=28.6
Q ss_pred HHHHHHHhhccCCCCcccHHHHHHH------------HHHHHHHHCCCCCCceeHHHH
Q 028513 118 EVKSMLSEVDREGDGYIPLEALISR------------LKETFDFFDADHDGKITAEEL 163 (208)
Q Consensus 118 ~~~~~~~~~d~~~~g~i~~~eF~~~------------~~~~F~~~D~~~~G~I~~~e~ 163 (208)
.+.++|...|.+.+|.|+|.+++.. +...|+++|.+++ ..+.++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 4555666666666666666666665 5666666666666 6666655
No 130
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=90.66 E-value=0.46 Score=41.87 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=45.4
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFED 199 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~e 199 (208)
+..+|+.+|.+++|.|+..+|...|..+. ..---+-+..++..+|.+++ ..+.++
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-cccccc
Confidence 88999999999999999999999998875 44444567888999998888 666554
No 131
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=89.56 E-value=0.35 Score=30.08 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc----cCCCCcccHHHHH
Q 028513 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD----REGDGYIPLEALI 140 (208)
Q Consensus 80 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d----~~~~g~i~~~eF~ 140 (208)
+++.+.|+.+ .++.++|+..||+..|.. -..+.|...+..+. ....|.++|..|+
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-----e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~ 64 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTP-----EQAEYCISRMPPYEGPDGDAIPGAYDYESFT 64 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-C-----CCHHHHHCCSEC--SSS----TTEEECHHHH
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCc-----HHHHHHHHHCcccCCCCcCCCCCCcCHHHHH
Confidence 4678899999 677899999999998631 12233332222221 1123778998886
No 132
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.70 E-value=6.5 Score=27.58 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=17.0
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTK 169 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~ 169 (208)
+.+++..||.+++|.|..-.|+.+|..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 677777777777777777777766643
No 133
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.31 E-value=6.3 Score=25.86 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=38.2
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHH-------hCC---CCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTK-------LGD---ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~-------~g~---~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
++.+|.++ .|.+|.++...|..+|.. +|+ ..-.+..+..+|... .....|+.++|++.|..
T Consensus 5 yRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 5 YRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 56788888 577888888888888764 221 122667778888875 35667999999998864
No 134
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=86.07 E-value=3.7 Score=37.66 Aligned_cols=129 Identities=9% Similarity=0.115 Sum_probs=80.7
Q ss_pred CCHHHHH-HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCH-HHHHHHHHhhccCCCCcccHHHHHHH-----HHHH
Q 028513 74 ISLDMNY-ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQ-EEVKSMLSEVDREGDGYIPLEALISR-----LKET 146 (208)
Q Consensus 74 ls~~~~~-~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~-----~~~~ 146 (208)
.++-+++ .++..+..+|.+....|+..+++.+|....+. ++. ..+..-+.. |....+.++|++|..+ +...
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k-~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~ 214 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFK-VSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQ 214 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEE-echHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccc
Confidence 3444554 56778888887777789999999999888776 433 333333333 2345678999999888 1111
Q ss_pred HHHH------------CCCCCCceeHHHHHHHHHHhCCCCCCH---HHHHHHHHhHcCC-----CCCceeHHHHHHHHH
Q 028513 147 FDFF------------DADHDGKITAEELFGVFTKLGDELCTL---DDCRGMIALVDKN-----GDGFVCFEDFSRMME 205 (208)
Q Consensus 147 F~~~------------D~~~~G~I~~~e~~~~l~~~g~~~~s~---~~~~~l~~~~D~~-----~dg~i~~~eF~~~l~ 205 (208)
|... +...--.++..||.++|.... ..... ..+++++..|=.| ....+.+.||+.+|=
T Consensus 215 ~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q-~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLF 292 (1267)
T KOG1264|consen 215 KAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQ-QEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLF 292 (1267)
T ss_pred hhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhh-HHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHh
Confidence 1111 111224699999999997664 22222 2345555555222 355799999999874
No 135
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.14 E-value=3.7 Score=36.44 Aligned_cols=62 Identities=15% Similarity=0.273 Sum_probs=47.0
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCC-CCCHHHHHHHHHhHcC-CCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDE-LCTLDDCRGMIALVDK-NGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~-~~s~~~~~~l~~~~D~-~~dg~i~~~eF~~~l~~ 206 (208)
+..+|..|-. ++.++.++|..+|...+.. ..+.+.+..||..+.. -..+.++++.|..+|..
T Consensus 27 i~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 27 IKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 6777877743 4689999999999887533 4577888888887632 24567999999999864
No 136
>PLN02228 Phosphoinositide phospholipase C
Probab=83.13 E-value=6.1 Score=35.00 Aligned_cols=62 Identities=23% Similarity=0.431 Sum_probs=43.6
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCC-CCCHHHHHHHHHhHcCC----CCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDE-LCTLDDCRGMIALVDKN----GDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~-~~s~~~~~~l~~~~D~~----~dg~i~~~eF~~~l~~ 206 (208)
+..+|..+-. ++.|+.++|..+|...+.. ..+.+.+..++..+... ..|.++++.|..+|..
T Consensus 26 i~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 26 IKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred HHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 5666666642 2578888888888877533 35566778888887543 3467999999999854
No 137
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=81.92 E-value=2 Score=37.78 Aligned_cols=68 Identities=28% Similarity=0.375 Sum_probs=49.6
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHH-HHHHHHHhhccCCCCcccHHHHHHH
Q 028513 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQE-EVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 71 ~~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
...+++.-.+.+..+|..+|.|+||-++..||..++......+.... +.+. .-.+..|.+++.-|+..
T Consensus 306 s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~----t~~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 306 SVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDS----TVKNERGWLTLNGFLSQ 374 (625)
T ss_pred ceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccccc----ceecccceeehhhHHHH
Confidence 34677789999999999999999999999999999988755421110 1110 11235688888888776
No 138
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=80.94 E-value=6.9 Score=27.89 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=35.5
Q ss_pred CcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHhCCCC
Q 028513 95 GVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFFDADHDGKITAEELFGVFTKLGDEL 174 (208)
Q Consensus 95 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~ 174 (208)
+.|+..||.++-.-+.+ +...+..++..+..+| .+..|+ ..+.|+.+.|+.+|..+-...
T Consensus 6 ~~lsp~eF~qLq~y~ey---s~kklkdvl~eF~~~g---------------~~~~~~--~~~~Id~egF~~Fm~~yLe~d 65 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY---STKKLKDVLKEFHGDG---------------SLAKYN--PEEPIDYEGFKLFMKTYLEVD 65 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTS---------------GGGGGE--ETTEE-HHHHHHHHHHHTT-S
T ss_pred eccCHHHHHHHHHHHHH---HHHHHHHHHHHHhcCC---------------cccccC--CCCCcCHHHHHHHHHHHHcCC
Confidence 56667777666544432 2344555555553222 122333 234677777777777764356
Q ss_pred CCHHHHHHHHHhH
Q 028513 175 CTLDDCRGMIALV 187 (208)
Q Consensus 175 ~s~~~~~~l~~~~ 187 (208)
++++-...||..|
T Consensus 66 ~P~~lc~hLF~sF 78 (138)
T PF14513_consen 66 LPEDLCQHLFLSF 78 (138)
T ss_dssp --HHHHHHHHHHS
T ss_pred CCHHHHHHHHHHH
Confidence 7777777777666
No 139
>PLN02230 phosphoinositide phospholipase C 4
Probab=80.73 E-value=8.5 Score=34.35 Aligned_cols=63 Identities=14% Similarity=0.307 Sum_probs=44.3
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCC--CCCCHHHHHHHHHhHcC-------CCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGD--ELCTLDDCRGMIALVDK-------NGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~--~~~s~~~~~~l~~~~D~-------~~dg~i~~~eF~~~l~~ 206 (208)
+..+|..|-.+ .+.++.++|..+|...+. ...+.+++..++..+-. -..+.++++.|..+|..
T Consensus 31 i~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 31 VRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 67788888433 378999999999988752 24466777777765421 12446999999998864
No 140
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=79.80 E-value=0.62 Score=35.08 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=44.8
Q ss_pred HHHHHHHHCCC-CCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDAD-HDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~-~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+.+.|-.+|+. .||+++..||.-+-..+ ..-+.-+..+|...|.|+||.|.++||..++-.
T Consensus 189 v~wqf~qld~~p~d~~~sh~el~pl~ap~---ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gi 250 (259)
T KOG4004|consen 189 VHWQFGQLDQHPIDGYLSHTELAPLRAPL---IPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 250 (259)
T ss_pred eeeeeccccCCCccccccccccccccCCc---ccHHhhchhhhhcccCCCCCceeHHHhhcccCc
Confidence 77788888876 58999998876543221 123344677888899999999999999877643
No 141
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=78.47 E-value=2.5 Score=26.32 Aligned_cols=34 Identities=9% Similarity=0.017 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 173 ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 173 ~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
..+....+..+...|+.-..++|+.++|++.|+.
T Consensus 20 ~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 20 KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3445555666666665556667777777766653
No 142
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=78.42 E-value=2.3 Score=29.13 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 114 PTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 114 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
+++++++.+|..+-.|..|.|.|.||+.-
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~k 32 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSK 32 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHH
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHH
Confidence 67899999999999999999999999766
No 143
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=76.89 E-value=1.2 Score=33.54 Aligned_cols=43 Identities=30% Similarity=0.483 Sum_probs=36.0
Q ss_pred hhccC-CCCcccHHHHHHH----------HHHHHHHHCCCCCCceeHHHHHHHH
Q 028513 125 EVDRE-GDGYIPLEALISR----------LKETFDFFDADHDGKITAEELFGVF 167 (208)
Q Consensus 125 ~~d~~-~~g~i~~~eF~~~----------~~~~F~~~D~~~~G~I~~~e~~~~l 167 (208)
.+|.. .||.++-.|...+ ....|+.+|.|+||+|..+|+...+
T Consensus 195 qld~~p~d~~~sh~el~pl~ap~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 195 QLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccCCCccccccccccccccCCcccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 44544 3899999998877 8889999999999999999988765
No 144
>PLN02952 phosphoinositide phospholipase C
Probab=76.24 E-value=9.3 Score=34.15 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=33.9
Q ss_pred CCCceeHHHHHHHHHHhCC-CCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 154 HDGKITAEELFGVFTKLGD-ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 154 ~~G~I~~~e~~~~l~~~g~-~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
+.|.++.++|..+.+.+.. ......++..+|..+- .+++.++.++|..+|..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~-~~~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFS-VGGGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHh-CCCCccCHHHHHHHHHH
Confidence 3467777777666655531 2346677888888874 34456888888888764
No 145
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=74.69 E-value=42 Score=26.80 Aligned_cols=91 Identities=10% Similarity=0.130 Sum_probs=52.2
Q ss_pred CCCcccHHHHHHHHHHh--CCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHH---------------HHHHHHHCCCCC
Q 028513 93 NDGVVLRSELEALLIRL--GADPPTQEEVKSMLSEVDREGDGYIPLEALISRL---------------KETFDFFDADHD 155 (208)
Q Consensus 93 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~---------------~~~F~~~D~~~~ 155 (208)
-||.|+..|+. +...+ .+. ++.++.......+........++++|+..+ ..+|.+- --|
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~-l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA--~AD 143 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMN-LHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAA--FAD 143 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcC-CCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--Hhc
Confidence 37899999987 33332 122 445553333444444444558888888772 3333332 234
Q ss_pred CceeHHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 028513 156 GKITAEELFGVFTKLGDELCTLDDCRGMIALV 187 (208)
Q Consensus 156 G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~ 187 (208)
|.++..|-.-+........++..++..+...+
T Consensus 144 G~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~ 175 (267)
T PRK09430 144 GSLHPNERQVLYVIAEELGFSRFQFDQLLRMM 175 (267)
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 67888775444332222458888887777764
No 146
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=74.63 E-value=5 Score=28.61 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=26.6
Q ss_pred CCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCC-------CCCceeHHHHHHHHH
Q 028513 155 DGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKN-------GDGFVCFEDFSRMME 205 (208)
Q Consensus 155 ~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~-------~dg~i~~~eF~~~l~ 205 (208)
-+.|+..||.++-.-+. -+...+..++..|..+ .++.|+|+.|..+|.
T Consensus 5 ~~~lsp~eF~qLq~y~e---ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~ 59 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE---YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMK 59 (138)
T ss_dssp -S-S-HHHHHHHHHHHH---H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHH
T ss_pred eeccCHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHH
Confidence 35678888887765543 2334556666666322 345799999999986
No 147
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=73.47 E-value=12 Score=23.16 Aligned_cols=47 Identities=9% Similarity=0.160 Sum_probs=31.5
Q ss_pred eeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 158 ITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 158 I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
++-+++..++...| ..++..++..++..-|..+--.++-+.+..+|.
T Consensus 14 l~d~~m~~if~l~~-~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 14 LKDDDMIEIFALAG-FEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred CChHHHHHHHHHcC-CccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 44567788887777 888888888888875544444455555555543
No 148
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=72.85 E-value=13 Score=20.75 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCCC-C-CCcccHHHHHHHHHHh
Q 028513 77 DMNYELVQACKLLDRD-N-DGVVLRSELEALLIRL 109 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~~-~-~g~i~~~e~~~~l~~~ 109 (208)
..+..|..+|+.+-.. | ...++..||+.+|..-
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 3466788999998633 3 4699999999999754
No 149
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=72.52 E-value=6.6 Score=18.25 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=11.2
Q ss_pred CCCCCCcccHHHHHHHH
Q 028513 90 DRDNDGVVLRSELEALL 106 (208)
Q Consensus 90 D~~~~g~i~~~e~~~~l 106 (208)
|.|+||.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 56778888777766543
No 150
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=72.45 E-value=24 Score=30.56 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=32.4
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 028513 85 ACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (208)
Q Consensus 85 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (208)
+|..+-....+.+..--|..+|+..|+. .++..+..++..+
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLr-tsDPRLk~mMd~m 131 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLR-TSDPRLKDMMDEM 131 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCC-cCCchHHHHHHHH
Confidence 5677665557999999999999999998 7777776666543
No 151
>PLN02223 phosphoinositide phospholipase C
Probab=71.81 E-value=17 Score=31.94 Aligned_cols=63 Identities=8% Similarity=-0.002 Sum_probs=40.6
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHH---HHh-CCCCCCHHHHHHHHHhHcCC--------CCCceeHHHHHHHHHh
Q 028513 143 LKETFDFFDADHDGKITAEELFGVF---TKL-GDELCTLDDCRGMIALVDKN--------GDGFVCFEDFSRMMEL 206 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l---~~~-g~~~~s~~~~~~l~~~~D~~--------~dg~i~~~eF~~~l~~ 206 (208)
+..+|..|- ++.|.++.+.+.++| ... |....+.++++.++..+-.. ..+.++.+.|..+|..
T Consensus 18 v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 18 ILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 566676662 566777777777777 443 32456667777776655221 2256999999998854
No 152
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=71.25 E-value=15 Score=24.89 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=33.1
Q ss_pred hccCCCCcccHHHHHHHH--HHHHHHHCCCCCCceeHHHHHHHHHHh---CCCCCCHHHHHHHHHhHcCC
Q 028513 126 VDREGDGYIPLEALISRL--KETFDFFDADHDGKITAEELFGVFTKL---GDELCTLDDCRGMIALVDKN 190 (208)
Q Consensus 126 ~d~~~~g~i~~~eF~~~~--~~~F~~~D~~~~G~I~~~e~~~~l~~~---g~~~~s~~~~~~l~~~~D~~ 190 (208)
||......|+.++...++ ..-|++.|..-..-||..=|.+++... |..-++...+..++..++..
T Consensus 12 YDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~ 81 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGGS 81 (107)
T ss_pred cCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChh
Confidence 455555666666655552 233445554444445555555555432 21345555566666665433
No 153
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=71.04 E-value=21 Score=23.84 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 028513 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (208)
Q Consensus 78 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (208)
....+...|..+-. ||.|...+|..|+ |.. -+.+.+..+|..+
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~-dSkeFA~eLFdAL 70 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMK-DSKEFAGELFDAL 70 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T---S-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCc-ccHHHHHHHHHHH
Confidence 47778888988887 7899999999997 554 4566666666554
No 154
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.74 E-value=4.6 Score=33.54 Aligned_cols=57 Identities=25% Similarity=0.396 Sum_probs=41.2
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHH-HhHcCCCCCceeHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMI-ALVDKNGDGFVCFEDF 200 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~-~~~D~~~dg~i~~~eF 200 (208)
++++|+.+|+.++|+|+..-++.++.... ..+++.+.-.++ ..+|...-|.|-.++|
T Consensus 311 ~rR~f~a~d~~d~nfis~s~~~~vm~~~N-~~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 311 LRRNFHAYDPEDNNFISCSGLQIVMTALN-RLVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred HHhhhhccCccCCCeeecHHHHHHHHHhc-ccccCHHHHHHhcCccChhhcceEEeccc
Confidence 99999999999999999999999999887 555554433333 3345555555544444
No 155
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=68.90 E-value=8.2 Score=25.59 Aligned_cols=10 Identities=30% Similarity=0.169 Sum_probs=4.9
Q ss_pred CCcccHHHHH
Q 028513 131 DGYIPLEALI 140 (208)
Q Consensus 131 ~g~i~~~eF~ 140 (208)
||.++-.|-.
T Consensus 13 DG~v~~~E~~ 22 (104)
T cd07313 13 DGEYDEEERA 22 (104)
T ss_pred cCCCCHHHHH
Confidence 4555555543
No 156
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.03 E-value=8.6 Score=32.30 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=46.4
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 203 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~ 203 (208)
..++|..+.. -+|+|+-..-...|.. ..+....+-.+++..|.|.||.++-+||.-.
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv~---sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMVK---SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHHh---ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 7788877753 4588888777777655 4488889999999999999999999999743
No 157
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=66.63 E-value=23 Score=20.45 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 028513 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLS 124 (208)
Q Consensus 73 ~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 124 (208)
.+|+++...|..+|.. +..++..+...+...+|+ +...|..+|.
T Consensus 6 ~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l---~~~~V~~WF~ 49 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGL---TERQVKNWFQ 49 (57)
T ss_dssp SSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTS---SHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----hccccccccccccccccc---cccccccCHH
Confidence 5778999999999985 468999999999988885 4788887775
No 158
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=66.63 E-value=14 Score=22.55 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=28.2
Q ss_pred HHHCCCCCCceeHHHHHHHHHH----------hCCCCCCHHHHHHHHHhH
Q 028513 148 DFFDADHDGKITAEELFGVFTK----------LGDELCTLDDCRGMIALV 187 (208)
Q Consensus 148 ~~~D~~~~G~I~~~e~~~~l~~----------~g~~~~s~~~~~~l~~~~ 187 (208)
++||+..+.+|+++++.+++.. .| ..++...+-.++.+-
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktg-eDiT~~iL~QIi~e~ 58 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTG-EDITRSILLQIILEE 58 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCC-cccHHHHHHHHHHHH
Confidence 4689999999999999999864 24 566666655555443
No 159
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=64.82 E-value=25 Score=20.22 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 028513 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (208)
Q Consensus 73 ~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 125 (208)
.++.++...|..+|.. +.+.+..++..+...+|+ +...|..+|..
T Consensus 6 ~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l---~~~qV~~WF~n 50 (59)
T cd00086 6 RFTPEQLEELEKEFEK-----NPYPSREEREELAKELGL---TERQVKIWFQN 50 (59)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCc---CHHHHHHHHHH
Confidence 4667888999999987 468999999999998885 47888887754
No 160
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=64.43 E-value=36 Score=22.05 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=27.0
Q ss_pred CceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCC
Q 028513 156 GKITAEELFGVFTKLGDELCTLDDCRGMIALVDKN 190 (208)
Q Consensus 156 G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~ 190 (208)
..||.+||....+..+ ..+++.++..++..+-.+
T Consensus 13 n~iT~~eLlkyskqy~-i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 13 NNITAKELLKYSKQYN-ISITKKQAEQIANILRGK 46 (85)
T ss_pred hcCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcC
Confidence 3588888888888888 888888888888877443
No 161
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=64.32 E-value=13 Score=26.06 Aligned_cols=60 Identities=28% Similarity=0.282 Sum_probs=32.3
Q ss_pred CCcccHHHHHHHHHHh--CCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-------------HHHHHHHHCCCC
Q 028513 94 DGVVLRSELEALLIRL--GADPPTQEEVKSMLSEVDREGDGYIPLEALISR-------------LKETFDFFDADH 154 (208)
Q Consensus 94 ~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-------------~~~~F~~~D~~~ 154 (208)
||.++.+|...+...+ ... ++......++..++......+++.+|+.. +..++.....||
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~ADG 111 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFG-LSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYADG 111 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGC-GSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCTT
T ss_pred CCCCCHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCC
Confidence 6888888888777655 122 34455555555444333334566666544 555666655544
No 162
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=63.43 E-value=9.3 Score=38.09 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=48.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC----CCCHHHHHHHHHhhccCCCCcccHHHHH
Q 028513 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGAD----PPTQEEVKSMLSEVDREGDGYIPLEALI 140 (208)
Q Consensus 73 ~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~----~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 140 (208)
.|++++.+.+.++|..+|++..|.|...++..++..+..+ .+.+. +-+-..+-...++.|+|.+-+
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~--kli~mdmp~~~gd~V~f~d~L 1479 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR--KLISMDLPMVSGDRVHCLDIL 1479 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc--eeeeeecCcCCCCeeehhhHH
Confidence 5888999999999999999999999999999999987433 11222 112222334567889988854
No 163
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=62.65 E-value=9.9 Score=24.32 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=15.0
Q ss_pred CCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 028513 155 DGKITAEELFGVFTKLGDELCTLDDCRGMIALV 187 (208)
Q Consensus 155 ~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~ 187 (208)
.|+||..++..+|.. ..++.+.++.++..+
T Consensus 19 ~G~lT~~eI~~~L~~---~~~~~e~id~i~~~L 48 (82)
T PF03979_consen 19 KGYLTYDEINDALPE---DDLDPEQIDEIYDTL 48 (82)
T ss_dssp HSS-BHHHHHHH-S----S---HHHHHHHHHHH
T ss_pred cCcCCHHHHHHHcCc---cCCCHHHHHHHHHHH
Confidence 466666666666653 236666666666655
No 164
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=62.26 E-value=42 Score=22.05 Aligned_cols=48 Identities=23% Similarity=0.134 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHHHHhC--CCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 94 DGVVLRSELEALLIRLG--ADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 94 ~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
||.++..|...+-..+. +. ++..+...++..+........++.+|...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 62 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFG-LDAEEAAELLAEAEALEEEAPDLYEFTSL 62 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 56777777655544321 12 44666666666665544555677777554
No 165
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=61.86 E-value=34 Score=20.87 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=24.8
Q ss_pred CCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHH
Q 028513 131 DGYIPLEALISRLKETFDFFDADHDGKITAEELFGVF 167 (208)
Q Consensus 131 ~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l 167 (208)
+|.|...++...+...|..||...-|+-+..+|...+
T Consensus 21 ~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~~ 57 (74)
T PF12872_consen 21 DGWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELLESL 57 (74)
T ss_dssp TSSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT-
T ss_pred CceEEHHHHHHHHHHHCCCCCccccCCCcHHHHHHhC
Confidence 5567777777777777777777777777777777543
No 166
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.47 E-value=6.7 Score=32.60 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHH-HhhccCCCCcccHHHHH
Q 028513 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSML-SEVDREGDGYIPLEALI 140 (208)
Q Consensus 79 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~-~~~d~~~~g~i~~~eF~ 140 (208)
.+.+++.|+.+|+.++|+|+..-+..++..++.. .++...-.++ ..+|...-|.|-.++|.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~-vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRL-VSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhccc-ccCHHHHHHhcCccChhhcceEEecccc
Confidence 4568999999999999999999999999998855 5655444333 34555555555555553
No 167
>PLN02222 phosphoinositide phospholipase C 2
Probab=61.12 E-value=46 Score=29.77 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHHhhcc-CCCCcccHHHHHHH
Q 028513 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGAD-PPTQEEVKSMLSEVDR-EGDGYIPLEALISR 142 (208)
Q Consensus 81 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~-~~~g~i~~~eF~~~ 142 (208)
++..+|..+-. ++.++.++|..+|...... ..+.+.+..++..+.. ...+.++++.|..+
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~y 87 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKY 87 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHH
Confidence 56677777653 4799999999999887442 2467778888887632 23567999999777
No 168
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.05 E-value=14 Score=33.44 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=42.3
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHh---CC----CCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKL---GD----ELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~---g~----~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
++..|.++|. ++|.++.+++..++... +. .....+....++...|.++.|.+.++++.-.+.
T Consensus 20 l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 20 LQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred HHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHH
Confidence 6777777776 78888888888877543 10 233445567778888888888877777665554
No 169
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=60.38 E-value=23 Score=22.04 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=30.7
Q ss_pred cchhhhcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 028513 67 WSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRL 109 (208)
Q Consensus 67 ~~~~~~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~ 109 (208)
+..+...+++.....+...|..|- .+.|+.+||...++..
T Consensus 15 ~~~l~~~l~~~~~~~l~~~Y~~~k---~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 15 FSALSKHLPPSKMDLLQKHYEEFK---KKKISREEFVRKLRQI 54 (70)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHH
Confidence 344566777888888888887775 4699999999988765
No 170
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=59.84 E-value=52 Score=22.37 Aligned_cols=42 Identities=5% Similarity=0.071 Sum_probs=37.6
Q ss_pred HHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 028513 145 ETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 187 (208)
Q Consensus 145 ~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~ 187 (208)
-+|-+++..++-..+..++..+|...| ..+.++.++.++..+
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG-~E~d~e~i~~visel 46 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVG-AEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhC-cccCHHHHHHHHHHh
Confidence 466777788888899999999999999 999999999999987
No 171
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=59.62 E-value=49 Score=21.91 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHC-CCCCCce
Q 028513 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFFD-ADHDGKI 158 (208)
Q Consensus 80 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~D-~~~~G~I 158 (208)
+.+..+|..+-. .|...+++.+.+.+|+ ++.++..+-... . + +.+. ...++..+= ..|. .-
T Consensus 4 ~~l~~~f~~i~~----~V~~~~Wk~laR~LGL---se~~I~~i~~~~---~-~--~~eq----~~qmL~~W~~~~G~-~A 65 (96)
T cd08315 4 ETLRRSFDHFIK----EVPFDSWNRLMRQLGL---SENEIDVAKANE---R-V--TREQ----LYQMLLTWVNKTGR-KA 65 (96)
T ss_pred hHHHHHHHHHHH----HCCHHHHHHHHHHcCC---CHHHHHHHHHHC---C-C--CHHH----HHHHHHHHHHhhCC-Cc
Confidence 346667766632 6778899999999995 488887765432 1 1 2222 233333332 2232 46
Q ss_pred eHHHHHHHHHHhCCCCCCHHHHHHHH
Q 028513 159 TAEELFGVFTKLGDELCTLDDCRGMI 184 (208)
Q Consensus 159 ~~~e~~~~l~~~g~~~~s~~~~~~l~ 184 (208)
+...+.++|..++ .....+.++..+
T Consensus 66 t~~~L~~aL~~~~-~~~~Ae~I~~~l 90 (96)
T cd08315 66 SVNTLLDALEAIG-LRLAKESIQDEL 90 (96)
T ss_pred HHHHHHHHHHHcc-cccHHHHHHHHH
Confidence 6889999999999 777777776554
No 172
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=59.39 E-value=30 Score=19.42 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHH
Q 028513 160 AEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 203 (208)
Q Consensus 160 ~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~ 203 (208)
.+|...+|..+| .++.++..++..+.. ...++.++.++.
T Consensus 3 ~~d~~~AL~~LG---y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLG---YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTT---S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 367888888988 889999999999865 344677777654
No 173
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=58.27 E-value=38 Score=20.21 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHHhCCCCCCHHHHHH
Q 028513 72 ADISLDMNYELVQACKLLDRDNDGV----VLRSELEALLIRLGADPPTQEEVKS 121 (208)
Q Consensus 72 ~~ls~~~~~~l~~~F~~~D~~~~g~----i~~~e~~~~l~~~~~~~~~~~~~~~ 121 (208)
+.||+++.+.|...|.. .|+ .+..+...+...+|+. +..+.-
T Consensus 6 T~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl~---~~vvKV 51 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGVT---RKVFKV 51 (58)
T ss_pred CCCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCCC---HHHeee
Confidence 46888999999999987 456 8888888888888864 544443
No 174
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=58.14 E-value=1.1e+02 Score=28.29 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=42.7
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 203 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~ 203 (208)
+...+.+||...+|.|..-+|+-.+.-+. -...++....||...- +....++...|..+
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lc-k~~leek~~ylF~~vA-~~~sq~~q~~l~lL 530 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLC-KAHLEDKYRYLFKQVA-SSTSQCDQRRLGLL 530 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHh-cchhHHHHHHHHHHHc-CchhhHHHHHHHHH
Confidence 88899999999999999999999887775 4445566678898873 33333434444433
No 175
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=57.83 E-value=63 Score=22.62 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=19.3
Q ss_pred HHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 180 CRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 180 ~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
+.-++..||.++.|.|..-.|...+.
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 56778999999999999999877664
No 176
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.80 E-value=20 Score=30.23 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHH
Q 028513 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALI 140 (208)
Q Consensus 81 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 140 (208)
...++|..+.+- +|+|+-..-+..+.... +....+-++|...|.|.||.++-+||.
T Consensus 445 ~yde~fy~l~p~-~gk~sg~~ak~~mv~sk---lpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 445 TYDEIFYTLSPV-NGKLSGRNAKKEMVKSK---LPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chHhhhhccccc-CceeccchhHHHHHhcc---CchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 466788887764 68999888888776554 346667777777777777777777774
No 177
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=57.09 E-value=88 Score=24.08 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhCCC
Q 028513 99 RSELEALLIRLGAD 112 (208)
Q Consensus 99 ~~e~~~~l~~~~~~ 112 (208)
..+|..++..+|..
T Consensus 60 r~~f~~~~~~lGvd 73 (223)
T PF04157_consen 60 RSQFQSMCASLGVD 73 (223)
T ss_dssp HHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCCC
Confidence 35888888888876
No 178
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.30 E-value=1e+02 Score=24.56 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=37.6
Q ss_pred HHHHHHHH-hCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 81 ELVQACKL-LDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 81 ~l~~~F~~-~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
.+.+.|.. .|+..+..|..+-+..++..+|.. +..-.+-.+--.+....-+.++.+||+..
T Consensus 65 ~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~-p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g 126 (260)
T KOG3077|consen 65 RLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVE-PEDISVLVLAWKLGAATMCEFSREEFLKG 126 (260)
T ss_pred HHHHHHHHhcCcccccccChHHHHHHHHHhCCC-chhHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 34444444 455555688888899999999876 33322222222344556778888888875
No 179
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=56.08 E-value=62 Score=23.22 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=25.3
Q ss_pred HHHhCCCCCCHHHHHHHH----------HhHcCCCCCceeHHHHHHHH
Q 028513 167 FTKLGDELCTLDDCRGMI----------ALVDKNGDGFVCFEDFSRMM 204 (208)
Q Consensus 167 l~~~g~~~~s~~~~~~l~----------~~~D~~~dg~i~~~eF~~~l 204 (208)
..++| ..++++|+..++ .-+--+..|..+...|.+++
T Consensus 99 ~eklG-i~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 99 FEKLG-ITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHhC-CccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 34567 888888887777 11224578888888887764
No 180
>PLN02228 Phosphoinositide phospholipase C
Probab=55.62 E-value=73 Score=28.48 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-CCCHHHHHHHHHhhccC----CCCcccHHHHHHHH
Q 028513 81 ELVQACKLLDRDNDGVVLRSELEALLIRLGAD-PPTQEEVKSMLSEVDRE----GDGYIPLEALISRL 143 (208)
Q Consensus 81 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~~ 143 (208)
+|..+|..+-. ++.|+.++|..+|...... ......+..++..+... ..|.++.+.|..++
T Consensus 25 ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 25 SIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred HHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 45666766653 3589999999999887432 14456788888877543 24679999997774
No 181
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=55.19 E-value=27 Score=26.28 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=22.1
Q ss_pred CCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHc
Q 028513 151 DADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD 188 (208)
Q Consensus 151 D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D 188 (208)
..|.+|++..+|+.+.+...+ ..++.+++..++..-|
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~-~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKG-LWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT--TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcC-CCCCHHHHHHHHhhCC
Confidence 356778888888888887766 6678888888877643
No 182
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=55.03 E-value=46 Score=21.88 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=6.2
Q ss_pred CCcccHHHHHH
Q 028513 131 DGYIPLEALIS 141 (208)
Q Consensus 131 ~g~i~~~eF~~ 141 (208)
||.|+-.|-..
T Consensus 13 DG~v~~~E~~~ 23 (106)
T cd07316 13 DGRVSEAEIQA 23 (106)
T ss_pred cCCcCHHHHHH
Confidence 56666666443
No 183
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=55.00 E-value=58 Score=21.36 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHCCCCCCcee
Q 028513 80 YELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFFDADHDGKIT 159 (208)
Q Consensus 80 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~ 159 (208)
+.++-+|..+ .|.+|.++...|..+|..+ -.+....... -...+ ....++..|..- ...-.|+
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~----------lqip~~vgE~--~aFg~--~e~sv~sCF~~~--~~~~~I~ 65 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDV----------LQIPRAVGEG--PAFGY--IEPSVRSCFQQV--QLSPKIT 65 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHH----------HHHHHHTT-G--GGGT----HHHHHHHHHHT--TT-S-B-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHH----------HHHHHHhCcc--ccccC--cHHHHHHHhccc--CCCCccC
Confidence 4567788887 6778999999999998643 2222221110 01111 122267777664 2445678
Q ss_pred HHHHHHHHHH
Q 028513 160 AEELFGVFTK 169 (208)
Q Consensus 160 ~~e~~~~l~~ 169 (208)
.++|..+|..
T Consensus 66 ~~~Fl~wl~~ 75 (90)
T PF09069_consen 66 ENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888777754
No 184
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.14 E-value=77 Score=27.18 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHH
Q 028513 80 YELVQACKLLDRDNDGVVLRSELEALLIR 108 (208)
Q Consensus 80 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~ 108 (208)
+.|+.+-+.+|-|.+|-|+.+|-..+|+.
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHH
Confidence 34555556677777777777777666654
No 185
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=53.62 E-value=67 Score=23.31 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH------------
Q 028513 75 SLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR------------ 142 (208)
Q Consensus 75 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~------------ 142 (208)
++.....+..++.... ..|.+...++...|. .+...+..++..+. ..|.|.|..+..+
T Consensus 5 s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L~------Vsp~sVt~ml~rL~--~~GlV~~~~y~gi~LT~~G~~~a~~ 74 (154)
T COG1321 5 SETEEDYLETIYELLE--EKGFARTKDIAERLK------VSPPSVTEMLKRLE--RLGLVEYEPYGGVTLTEKGREKAKE 74 (154)
T ss_pred chHHHHHHHHHHHHHh--ccCcccHHHHHHHhC------CCcHHHHHHHHHHH--HCCCeEEecCCCeEEChhhHHHHHH
Confidence 4445555666666655 568999999998884 45556666666653 3455555444333
Q ss_pred -------HHHHHH-HHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHc
Q 028513 143 -------LKETFD-FFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD 188 (208)
Q Consensus 143 -------~~~~F~-~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D 188 (208)
+...|. ..+ |+.++...--..+. ..++++.++.|.+.++
T Consensus 75 ~~r~hrlle~fL~~~lg------~~~~~~~~ea~~le-h~~s~~~~~rl~~~l~ 121 (154)
T COG1321 75 LLRKHRLLERFLVDVLG------LDWEEAHEEAEGLE-HALSDETAERLDELLG 121 (154)
T ss_pred HHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHh-hcCCHHHHHHHHHHhC
Confidence 222222 222 55555555555666 7788888888888875
No 186
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=53.05 E-value=34 Score=25.57 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=21.3
Q ss_pred CCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 028513 152 ADHDGKITAEELFGVFTKLGDELCTLDDCRGMIAL 186 (208)
Q Consensus 152 ~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~ 186 (208)
.|.+|++..+++...+...+ ..++.+++.+++..
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~-~~~t~~~l~~vV~~ 61 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAY-KWVTRELLEAVVES 61 (179)
T ss_pred cCCCCCEEHHHHHHHHHHcc-CCCCHHHHHHHHHc
Confidence 35666777777776665544 55666666666654
No 187
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=50.89 E-value=23 Score=18.28 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=9.8
Q ss_pred CcccHHHHHHHHHHHHHHHC
Q 028513 132 GYIPLEALISRLKETFDFFD 151 (208)
Q Consensus 132 g~i~~~eF~~~~~~~F~~~D 151 (208)
|.|+++|++.++.++-..++
T Consensus 3 ~~i~~~~~~d~a~rv~~f~~ 22 (33)
T PF09373_consen 3 GTISKEEYLDMASRVNNFYE 22 (33)
T ss_pred ceecHHHHHHHHHHHHHHHH
Confidence 44555555555444444443
No 188
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=50.81 E-value=34 Score=24.35 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=49.2
Q ss_pred CCCCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHhCC--------CCCCHHHHHHHHHhHcCCCCC-ceeHHH
Q 028513 129 EGDGYIPLEALISRLKETFDFFDADHDGKITAEELFGVFTKLGD--------ELCTLDDCRGMIALVDKNGDG-FVCFED 199 (208)
Q Consensus 129 ~~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~--------~~~s~~~~~~l~~~~D~~~dg-~i~~~e 199 (208)
...+.++.++.+.+ -++. .=|+-.||.+||.+++..-.. ..+.++++..+...+...+.+ .+++.|
T Consensus 60 ~~~~~lgl~~l~~f---~W~l--alGd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e 134 (141)
T PF12419_consen 60 SSQSFLGLDQLLDF---DWEL--ALGDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAE 134 (141)
T ss_pred CCCCccChHHHhcc---eEEE--EECCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHH
Confidence 34577888775432 1111 126788999999999976432 567899999999999776655 499888
Q ss_pred HHHH
Q 028513 200 FSRM 203 (208)
Q Consensus 200 F~~~ 203 (208)
-+..
T Consensus 135 ~Lr~ 138 (141)
T PF12419_consen 135 ALRA 138 (141)
T ss_pred HHHH
Confidence 7764
No 189
>PLN02230 phosphoinositide phospholipase C 4
Probab=50.07 E-value=97 Score=27.93 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC--CCCHHHHHHHHHhhcc-------CCCCcccHHHHHHH
Q 028513 79 NYELVQACKLLDRDNDGVVLRSELEALLIRLGAD--PPTQEEVKSMLSEVDR-------EGDGYIPLEALISR 142 (208)
Q Consensus 79 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~--~~~~~~~~~~~~~~d~-------~~~g~i~~~eF~~~ 142 (208)
..++..+|..+-.++ +.++.++|..+|...... ..+...+..++..+-. -+.+.++++.|..+
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~y 99 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYY 99 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHH
Confidence 346788888885444 899999999999987532 1355666666654421 12456888888766
No 190
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=49.90 E-value=14 Score=33.63 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=14.1
Q ss_pred hcCcccccccccccccCcccCCCCC
Q 028513 6 KLSPKRLFRSKSKKDRTSVSRSDPS 30 (208)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~sr~~~~ 30 (208)
+|-|-+...-.|.-+.++.+.++++
T Consensus 1237 amppcpdlsessstmhsssssssss 1261 (1463)
T PHA03308 1237 AMPPCPDLSESSSTMHSSSSSSSSS 1261 (1463)
T ss_pred CCCCCCCcccccccccccccccccc
Confidence 4556666665566666655555333
No 191
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=47.64 E-value=60 Score=19.83 Aligned_cols=32 Identities=16% Similarity=0.530 Sum_probs=29.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 028513 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (208)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (208)
+.-|+.+-++..+..+|.. +++..++.+++.+
T Consensus 29 NPpine~mir~M~~QMG~k-pSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRK-PSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 4689999999999999999 9999999988776
No 192
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=47.23 E-value=6.9 Score=27.45 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=5.2
Q ss_pred CCCcccHHHHHH
Q 028513 130 GDGYIPLEALIS 141 (208)
Q Consensus 130 ~~g~i~~~eF~~ 141 (208)
-||.|+-+|-..
T Consensus 36 aDG~v~~~E~~~ 47 (140)
T PF05099_consen 36 ADGEVDPEEIEA 47 (140)
T ss_dssp TTSS--CHHHHH
T ss_pred cCCCCCHHHHHH
Confidence 455666665443
No 193
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.11 E-value=92 Score=24.80 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=10.3
Q ss_pred CCCCCceeHHHHHHHHHHhC
Q 028513 152 ADHDGKITAEELFGVFTKLG 171 (208)
Q Consensus 152 ~~~~G~I~~~e~~~~l~~~g 171 (208)
...-|..+++||...+..++
T Consensus 112 A~~m~~Fsr~ef~~g~~~l~ 131 (260)
T KOG3077|consen 112 AATMCEFSREEFLKGMTALG 131 (260)
T ss_pred cchhhhhhHHHHHHHHHHcC
Confidence 44445555555555555544
No 194
>PHA02105 hypothetical protein
Probab=45.91 E-value=51 Score=19.57 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=31.8
Q ss_pred ceeHHHHHHHHHHhCC--CCCCHHHHHHHHHhHcCCC--CCceeHHHHHHHH
Q 028513 157 KITAEELFGVFTKLGD--ELCTLDDCRGMIALVDKNG--DGFVCFEDFSRMM 204 (208)
Q Consensus 157 ~I~~~e~~~~l~~~g~--~~~s~~~~~~l~~~~D~~~--dg~i~~~eF~~~l 204 (208)
.++.+||..++..-.. .++..+.++.+-..|..-. --.++|+||..+|
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 4788888888865421 5666666777666664432 2348899997765
No 195
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=45.52 E-value=98 Score=21.23 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=40.3
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 84 QACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 84 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
-.|..+-.-++..++.+++..+|...|.. .....+..++..+.. .+.+|.+.-
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGve-Vd~~~~~l~~~~L~G-----KdI~ELIa~ 59 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNAD-VEDDVLDNFFKSLEG-----KTPHELIAA 59 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCC-ccHHHHHHHHHHHcC-----CCHHHHHHH
Confidence 34444555567789999999999999998 888888888887732 577777543
No 196
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=45.32 E-value=56 Score=19.59 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=25.5
Q ss_pred ceeHHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 028513 157 KITAEELFGVFTKLGDELCTLDDCRGMIALV 187 (208)
Q Consensus 157 ~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~ 187 (208)
.+|.+||...+..++ ..++..++-.|+..+
T Consensus 9 ~lTeEEl~~~i~~L~-~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 9 KLSKEELNELINSLD-EIPNRNDMLIIWNQV 38 (61)
T ss_pred HccHHHHHHHHHhhc-CCCCHHHHHHHHHHH
Confidence 588999999999999 888888888887765
No 197
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=44.46 E-value=99 Score=29.27 Aligned_cols=63 Identities=10% Similarity=0.237 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHh---------CCCCCCHHHHHHHHHhhccCC----CCcccHHHHHHH
Q 028513 80 YELVQACKLLDRDNDGVVLRSELEALLIRL---------GADPPTQEEVKSMLSEVDREG----DGYIPLEALISR 142 (208)
Q Consensus 80 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~---------~~~~~~~~~~~~~~~~~d~~~----~g~i~~~eF~~~ 142 (208)
-+|.++|..+..+...+++.++|..+|+.- -+++.....+..++..|..+. .|.++-+-|+.+
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ry 296 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRY 296 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHH
Confidence 457888999998888999999999999864 223466778888998886654 688999988887
No 198
>PRK00523 hypothetical protein; Provisional
Probab=44.15 E-value=79 Score=19.77 Aligned_cols=32 Identities=16% Similarity=0.507 Sum_probs=29.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 028513 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (208)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (208)
+--|+.+-++..+.++|.. +++..++.+++.+
T Consensus 37 NPpine~mir~M~~QMGqK-PSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRK-PSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 4689999999999999999 9999999998876
No 199
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=44.15 E-value=41 Score=20.51 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=31.5
Q ss_pred CCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCC
Q 028513 154 HDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNG 191 (208)
Q Consensus 154 ~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~ 191 (208)
.++.++..++.+.|...| ..++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g-~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRG-EELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHCC
Confidence 446799999999998888 9999999999999987654
No 200
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=43.38 E-value=1.2e+02 Score=26.47 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=44.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCC-CcccHHHHHHH
Q 028513 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGD-GYIPLEALISR 142 (208)
Q Consensus 73 ~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~ 142 (208)
.+.-..++....+|..+-+.+...|+..+|..++..+|.. ....+-...|..- .+. ..+.|..|+..
T Consensus 478 tl~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~-~dk~egi~~F~~~--a~s~~gv~yl~v~~~ 545 (612)
T COG5069 478 TLVWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLK-GDKEEGIRSFGDP--AGSVSGVFYLDVLKG 545 (612)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccc-cCCccceeeccCC--ccccccchHHHHHHH
Confidence 3444566667778888877777789999999999999887 5544444444322 222 24667776666
No 201
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=43.27 E-value=69 Score=26.58 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=43.2
Q ss_pred hhcCCHHHHHHHHHHHH--HhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHH
Q 028513 71 SADISLDMNYELVQACK--LLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKE 145 (208)
Q Consensus 71 ~~~ls~~~~~~l~~~F~--~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 145 (208)
++++..++.-.+.-.|. .+|..+.|.++.--.+..|..+... .-.+.++.+|... .+.+|.+.+-.|.+++++
T Consensus 99 s~~id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~g-k~~dklryIfs~i-sds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 99 SHQIDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGG-KIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHE 173 (434)
T ss_pred cccccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccc-hHHHHHHHHHHHH-ccchHHHHHHHHHHHHHH
Confidence 34455555555555554 3677777777777777777666443 3345566666555 456666666666666333
No 202
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=42.75 E-value=76 Score=21.76 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=39.0
Q ss_pred HHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHH
Q 028513 146 TFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSR 202 (208)
Q Consensus 146 ~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~ 202 (208)
+|-++-.-|+..+|.+++..+|...| ..+.+..+..+++.+.. .+.++.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaG-veVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVN-ADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 44555556777899999999999999 99999889888888732 34555553
No 203
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=42.23 E-value=1.1e+02 Score=20.87 Aligned_cols=55 Identities=27% Similarity=0.370 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 82 LVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 82 l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
+...|..++.-++-..+..+++.+|...|.. ...+.++.++..+. |+ +.+|.+..
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E-~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAE-IDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcc-cCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 3445666777778889999999999999998 88999999888772 22 66666543
No 204
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=41.65 E-value=97 Score=20.10 Aligned_cols=42 Identities=7% Similarity=0.028 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHH
Q 028513 96 VVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEA 138 (208)
Q Consensus 96 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 138 (208)
.|+..||.......+.+ ++..+++.+...+-.+.-.-.+-++
T Consensus 14 ~iT~~eLlkyskqy~i~-it~~QA~~I~~~lr~k~inIfn~~~ 55 (85)
T PF11116_consen 14 NITAKELLKYSKQYNIS-ITKKQAEQIANILRGKNINIFNEQE 55 (85)
T ss_pred cCCHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCCCCCCCHHH
Confidence 67788888888888887 8888877777666433333333333
No 205
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=41.46 E-value=1.4e+02 Score=21.81 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=48.0
Q ss_pred CCcccHHHHHHHHHHhCCC-CCCHHHHHHHHHhhccCCCCcccHHHHHHH-HHHHHHHHCCCCCCceeHHHHHHHHHHhC
Q 028513 94 DGVVLRSELEALLIRLGAD-PPTQEEVKSMLSEVDREGDGYIPLEALISR-LKETFDFFDADHDGKITAEELFGVFTKLG 171 (208)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-~~~~F~~~D~~~~G~I~~~e~~~~l~~~g 171 (208)
|.+|..+.+..+++..-.. .--..++...+..+ ..||+.+ --++-+.+-..+--+|+.+++..+|.++|
T Consensus 30 Dr~LPIANV~RIMK~~lP~naKIsKDAKE~vQEC---------VSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLG 100 (168)
T KOG0869|consen 30 DRFLPIANVSRIMKKALPANAKISKDAKETVQEC---------VSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLG 100 (168)
T ss_pred hhhccHHHHHHHHHhcCCcccccchHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcC
Confidence 3456666666666543110 01112333333332 3456655 44556666667778999999999999999
Q ss_pred CCCCCHHHHHHHHHhH
Q 028513 172 DELCTLDDCRGMIALV 187 (208)
Q Consensus 172 ~~~~s~~~~~~l~~~~ 187 (208)
..--.+-+...+..|
T Consensus 101 -Fe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 101 -FENYAEPLKIYLQKY 115 (168)
T ss_pred -cHhHHHHHHHHHHHH
Confidence 544444455555544
No 206
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=40.93 E-value=51 Score=28.66 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=44.6
Q ss_pred HHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhH---cC-----CCCCceeHHHHHHHHH
Q 028513 144 KETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV---DK-----NGDGFVCFEDFSRMME 205 (208)
Q Consensus 144 ~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~---D~-----~~dg~i~~~eF~~~l~ 205 (208)
..+|..|-....+.|...-|..+|+..| ..-++..+..+|..+ |. ...+.++.+.|.+++.
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstG-LrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTG-LRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcC-CCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 4577778656678999999999999999 777777777766554 32 2345688888887753
No 207
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=40.51 E-value=43 Score=20.16 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=21.1
Q ss_pred ceeHHHHHHHHHHhCCCCCCHHHHHHHH
Q 028513 157 KITAEELFGVFTKLGDELCTLDDCRGMI 184 (208)
Q Consensus 157 ~I~~~e~~~~l~~~g~~~~s~~~~~~l~ 184 (208)
.|+.++|..+|.... ..++.+++....
T Consensus 29 ~it~~DF~~Al~~~k-pSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVK-PSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCG-GSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcC-CCCCHHHHHHHH
Confidence 488999999999988 888888876553
No 208
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=40.03 E-value=65 Score=26.61 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-------HHHHH
Q 028513 75 SLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR-------LKETF 147 (208)
Q Consensus 75 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-------~~~~F 147 (208)
..++++.+.+-|.. |.|..-.+--+||.+.+..+... ....-++-+.+.+-..=+|.|=|.|...- +.++|
T Consensus 43 ~~~e~~A~l~E~r~-DyNr~HF~R~~ef~~~~d~l~~e-~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F 120 (355)
T PRK13654 43 NREELDAILEEMRA-DYNRHHFVRDEEFDQDWDHLDPE-TRKEFIDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELF 120 (355)
T ss_pred hHHHHHHHHHHHHh-CcccccccCChhhhhchhhCCHH-HHHHHHHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHH
Confidence 34677777777754 88877788888888865544322 22334555555665555788888877666 77888
Q ss_pred HHHCCC---CCCcee
Q 028513 148 DFFDAD---HDGKIT 159 (208)
Q Consensus 148 ~~~D~~---~~G~I~ 159 (208)
..+-.| +-|+|.
T Consensus 121 ~lMaRDEARHAGFlN 135 (355)
T PRK13654 121 QLMARDEARHAGFLN 135 (355)
T ss_pred HHHhhhHHHHhhhHH
Confidence 887666 456553
No 209
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=39.31 E-value=74 Score=26.34 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=27.6
Q ss_pred CCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHH
Q 028513 154 HDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 204 (208)
Q Consensus 154 ~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l 204 (208)
..|.||++|-...+...- ....++.++.+++.++ |+-+||..++
T Consensus 299 R~G~itReeal~~v~~~d-~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYD-GEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhc-ccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 456677777777766654 4455566666666663 5666776654
No 210
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=38.97 E-value=93 Score=21.18 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=39.4
Q ss_pred HHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHH
Q 028513 146 TFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSR 202 (208)
Q Consensus 146 ~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~ 202 (208)
+|-++-..|+..||.+++..+|...| ..+.+..+..+++.+.. .+.++.+.
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaG-veVe~~~~~lf~~~L~G-----Kdi~eLIa 56 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVG-VEVDDEKLNKVISELEG-----KDVEELIA 56 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcC-CCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 45555566777899999999999999 88988888888888732 44566554
No 211
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=38.45 E-value=87 Score=26.00 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=52.1
Q ss_pred CCcccHHHHHHH-HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 131 DGYIPLEALISR-LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 131 ~g~i~~~eF~~~-~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
...|+.+.=+.+ +......+|..+.|.+++--..-+|..+. -.--.+.+..||... .|..|.+.+-.|.+++..
T Consensus 99 s~~id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc-~gk~~dklryIfs~i-sds~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 99 SHQIDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLC-GGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHE 173 (434)
T ss_pred cccccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhc-cchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHH
Confidence 445666654444 55566788999999999988888887764 222345677788777 567888888887777764
No 212
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=38.39 E-value=2.7e+02 Score=24.61 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=16.0
Q ss_pred HHHHHHHhHcCCCCCc-eeHHHHHHHHHh
Q 028513 179 DCRGMIALVDKNGDGF-VCFEDFSRMMEL 206 (208)
Q Consensus 179 ~~~~l~~~~D~~~dg~-i~~~eF~~~l~~ 206 (208)
.+..|+...+.|..+. ..|++.+.++..
T Consensus 326 ~l~~ll~~a~~~p~~f~~~ye~m~~f~~~ 354 (514)
T PF10265_consen 326 ILSDLLVKADKDPKDFLEAYEEMMEFLQD 354 (514)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHcC
Confidence 3455666666665443 556666666653
No 213
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=38.04 E-value=1.2e+02 Score=21.60 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=23.6
Q ss_pred eeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcC
Q 028513 158 ITAEELFGVFTKLGDELCTLDDCRGMIALVDK 189 (208)
Q Consensus 158 I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~ 189 (208)
.|.++++.+...+. .+++++++..++..+|.
T Consensus 27 WT~eDV~~~a~gme-~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGME-YNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCC-CCCCHHHHHHHHHHHhc
Confidence 46777777766666 77888888888888765
No 214
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=37.74 E-value=90 Score=23.40 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=39.1
Q ss_pred chhhhcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 028513 68 SDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLS 124 (208)
Q Consensus 68 ~~~~~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 124 (208)
+..-+.|+++++..|...|. ++.+|-..|-.++-..|++ ++.++..+|.
T Consensus 103 kr~RT~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~L---setQVkvWFQ 151 (197)
T KOG0843|consen 103 KRIRTAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLSL---SETQVKVWFQ 151 (197)
T ss_pred CccccccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcCC---ChhHhhhhhh
Confidence 34567899999999999996 4689999999999888885 4777777664
No 215
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.38 E-value=83 Score=25.30 Aligned_cols=26 Identities=23% Similarity=0.190 Sum_probs=16.9
Q ss_pred ccccccCcccCCCCCCCCCCCCCCCC
Q 028513 16 KSKKDRTSVSRSDPSSFSSSSTSDSS 41 (208)
Q Consensus 16 ~~~~~~~~~sr~~~~s~~s~~sss~s 41 (208)
.++...+..|++.++|+.++.+|+..
T Consensus 11 ~~yg~ss~~SSsnSgS~KgSd~Sp~~ 36 (305)
T PF15290_consen 11 DSYGPSSTPSSSNSGSCKGSDSSPTM 36 (305)
T ss_pred ccccCcCCcccCCCccccCCCCCCCC
Confidence 34555665777778888776666543
No 216
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=37.21 E-value=47 Score=27.34 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-------HHHHH
Q 028513 75 SLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR-------LKETF 147 (208)
Q Consensus 75 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-------~~~~F 147 (208)
..++++.+.+-|+. |.|..-.+--+||.+....+... ....-++-+.+.+-..=+|.|=|.|...- +.++|
T Consensus 39 ~~~e~~A~l~E~r~-DyNr~HF~R~~eF~~~~d~l~~e-~r~~FidFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F 116 (351)
T CHL00185 39 NIEEIEAILEEFRA-DYNQQHFIRDNEFNQSWSNLDEK-TKSLFVEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGF 116 (351)
T ss_pred hHHHHHHHHHHHHh-CccccccccChhhhhchhhCCHH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHH
Confidence 34677777777754 88887788888888866544322 22334555555665555787888877666 77888
Q ss_pred HHHCCC---CCCcee
Q 028513 148 DFFDAD---HDGKIT 159 (208)
Q Consensus 148 ~~~D~~---~~G~I~ 159 (208)
..+..| +-|+|.
T Consensus 117 ~lMaRDEARHAGFlN 131 (351)
T CHL00185 117 LLMSRDEARHAGFLN 131 (351)
T ss_pred HHHhhhhHHHhhhHH
Confidence 887666 355543
No 217
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=37.00 E-value=1.3e+02 Score=20.28 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=36.5
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHH
Q 028513 83 VQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALI 140 (208)
Q Consensus 83 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 140 (208)
.-+....|.... ++.+++..+|...|.. .....+..++..+.. .+.++.+
T Consensus 5 ~A~Lll~~~g~~--~ta~~I~~IL~aaGve-Ve~~~~~~~~~aLaG-----k~V~eli 54 (105)
T cd04411 5 AAYLLLHKGGKE--LTEDKIKELLSAAGAE-IEPERVKLFLSALNG-----KNIDEVI 54 (105)
T ss_pred HHHHHHHhcCCC--CCHHHHHHHHHHcCCC-cCHHHHHHHHHHHcC-----CCHHHHH
Confidence 334444554333 9999999999999998 888888888877632 5677764
No 218
>PF07572 BCNT: Bucentaur or craniofacial development; InterPro: IPR011421 Vertebrate BCNT (named after Bucentaur) or human craniofacial development protein 1 (CFDP1) are characterised by an N-terminal acidic region, a central and single IR element (inverted repeat) from the retrotransposable element-1 family (RTE-1) and a highly conserved 82-amino acid region at the C terminus. This entry represents the BCNT C-terminal domain that is also found in Drosophila YETI, a protein that binds to a microtubule-based motor kinesin-1, and the yeast SWR1-complex protein 5 (SWC5), a component of the SWR1 chromatin remodeling complex [, ]. In the bovine genome recombination of BCNT through the IR element with a member of the retrotransposable element-1 family, leads to gene duplications, the insertion of the RTE-1 apurinic/apyrimidinic endonuclease (APE)-like domain (see IPR005135 from INTERPRO) with the concomitant loss of the conserved C-terminal domain of BCNT and with the additional recruitment of either 2 (p97bcnt) or 3 (p97bcnt-2) C-terminal IR-elements [].
Probab=36.92 E-value=41 Score=21.60 Aligned_cols=34 Identities=6% Similarity=0.325 Sum_probs=24.0
Q ss_pred ccHHHHHHH--HHHHHHHHCCCCCCceeHHHHHHHH
Q 028513 134 IPLEALISR--LKETFDFFDADHDGKITAEELFGVF 167 (208)
Q Consensus 134 i~~~eF~~~--~~~~F~~~D~~~~G~I~~~e~~~~l 167 (208)
++|..|+.- |..-...+...++|+|...+|.+-.
T Consensus 30 lDW~~fk~~egi~deL~~~~k~k~gYLekq~FL~R~ 65 (81)
T PF07572_consen 30 LDWASFKDKEGIEDELEKHNKGKDGYLEKQDFLQRV 65 (81)
T ss_pred HhHHHHHHhcchHHHHHHHhhcchhhhHHHHHHHHH
Confidence 566666665 6666777766678888888877654
No 219
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=36.58 E-value=82 Score=17.75 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 028513 73 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE 125 (208)
Q Consensus 73 ~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 125 (208)
.++++++..|...|.. +.+.+..+...+...+|+. ...+..+|..
T Consensus 6 ~~~~~~~~~L~~~f~~-----~~~P~~~~~~~la~~~~l~---~~qV~~WF~n 50 (56)
T smart00389 6 SFTPEQLEELEKEFQK-----NPYPSREEREELAAKLGLS---ERQVKVWFQN 50 (56)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCcC---HHHHHHhHHH
Confidence 3677888899988875 2378899999999888854 7777777753
No 220
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=36.46 E-value=1e+02 Score=18.94 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhccC
Q 028513 99 RSELEALLIRLGADPPTQEEVKSMLSEVDRE 129 (208)
Q Consensus 99 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~ 129 (208)
.+++..++...|.. ++..++..++..-+..
T Consensus 16 d~~m~~if~l~~~~-vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 16 DDDMIEIFALAGFE-VSKAELSAWLRKEDEK 45 (68)
T ss_pred hHHHHHHHHHcCCc-cCHHHHHHHHCCCCCc
Confidence 35566677666666 7777777776654433
No 221
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=35.78 E-value=90 Score=24.90 Aligned_cols=10 Identities=20% Similarity=0.591 Sum_probs=4.9
Q ss_pred CCceeHHHHH
Q 028513 155 DGKITAEELF 164 (208)
Q Consensus 155 ~G~I~~~e~~ 164 (208)
||.|+..|+.
T Consensus 69 DG~Vse~Ei~ 78 (267)
T PRK09430 69 KGRVTEADIR 78 (267)
T ss_pred CCCcCHHHHH
Confidence 3445555554
No 222
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=35.75 E-value=1.3e+02 Score=26.45 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhC-----CCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHh----------------hccCCCCcccH
Q 028513 78 MNYELVQACKLLD-----RDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSE----------------VDREGDGYIPL 136 (208)
Q Consensus 78 ~~~~l~~~F~~~D-----~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----------------~d~~~~g~i~~ 136 (208)
.-+.|+.+..++| .|.-|-|++.+|+.+|+-.... +.-..++.++.. .| ..|-.++|
T Consensus 518 VDE~LrGYLTKYDCSSADINPIGgISK~DLr~Fl~~a~~~-~~lp~L~~il~a~pTAELePl~~g~~~QtD-E~dmGmTY 595 (706)
T KOG2303|consen 518 VDESLRGYLTKYDCSSADINPIGGISKTDLRRFLQYAKEK-FGLPALQSILDAPPTAELEPLTDGDYSQTD-EADMGMTY 595 (706)
T ss_pred cchHhhhhhhhccccccccCCccCccHHHHHHHHHHHHHh-cCchHHHHHhcCCCcccccccccCcccccc-hhhhCccH
Confidence 3345667777765 5677999999999998743111 112222222211 11 12456889
Q ss_pred HHHHHH--HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 028513 137 EALISR--LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIAL 186 (208)
Q Consensus 137 ~eF~~~--~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~ 186 (208)
+|...+ ++.++ +-|- ..-|.++|...| ..+++.++.+=++.
T Consensus 596 ~ELsv~GrlRK~~------~cGP--ysMF~kLl~~W~-~klsp~qvaEKVk~ 638 (706)
T KOG2303|consen 596 AELSVFGRLRKVS------KCGP--YSMFCKLLHQWG-DKLSPRQVAEKVKR 638 (706)
T ss_pred HHHHHhHhhcccc------ccCc--HHHHHHHHHHhc-CcCCHHHHHHHHHH
Confidence 987644 33322 3343 445888888889 99998887554444
No 223
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=35.58 E-value=1.2e+02 Score=27.97 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHH
Q 028513 136 LEALISRLKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMM 204 (208)
Q Consensus 136 ~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l 204 (208)
..+.....+.+|+..-..+.-.|..+++... +.+++++.++..++...++.|+++.|....
T Consensus 399 ~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~f--------~~~E~a~~~~slfe~~~~~~Itrs~~~~~i 459 (714)
T KOG4629|consen 399 EKEAKIAARKIFKNVAKPGVILIDLDDLLRF--------MGDEEAERAFSLFEGASDENITRSSFKEWI 459 (714)
T ss_pred hhhHHHHHHHHHhccCCCCccchhhhhhhhc--------CCHHHHHHHHHhhhhhcccCccHHHHHHHH
Confidence 3344444777788777777666766666554 345677777777776656668887777654
No 224
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=35.24 E-value=52 Score=20.96 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHH
Q 028513 162 ELFGVFTKLGDELCTLDDCRGMIA 185 (208)
Q Consensus 162 e~~~~l~~~g~~~~s~~~~~~l~~ 185 (208)
|+..+|+.+| ..++++|...+-.
T Consensus 21 EIL~ALrkLg-e~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLG-EKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT-----HHHHHHHHH
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHH
Confidence 6778889999 9999999766644
No 225
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=35.20 E-value=84 Score=18.02 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=24.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCC
Q 028513 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREG 130 (208)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~ 130 (208)
.|.|+..+|+..+. .+...+..+++.+|..+
T Consensus 8 ~~~itv~~~rd~lg------~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 8 NGEITVAEFRDLLG------LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TSSBEHHHHHHHHT------S-HHHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHC------ccHHHHHHHHHHHhccC
Confidence 68999999999983 66888888888887654
No 226
>PRK08181 transposase; Validated
Probab=35.09 E-value=97 Score=24.75 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=26.7
Q ss_pred CcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 95 GVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 95 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
.+|+.+.+...|+.+.++ -....+..+.. ....+.++|+||+..
T Consensus 5 ~~~~~~~l~~~l~~LkL~-~~~~~~~~~~~---~a~~~~~~~~e~L~~ 48 (269)
T PRK08181 5 NVIDEARLGLLLNELRLP-TIKTLWPQFAE---QADKEGWPAARFLAA 48 (269)
T ss_pred CcccHHHHHHHHHHcCch-HHHHHHHHHHH---HHhhcCCCHHHHHHH
Confidence 467777788888887765 33333333332 223355788888777
No 227
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=34.72 E-value=83 Score=25.63 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-------HHHHHHH
Q 028513 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR-------LKETFDF 149 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-------~~~~F~~ 149 (208)
++.+.+..-|.. |.|..-.+--+||......+... ....-++-+.+.+-..=+|.|=|.|...- +.++|..
T Consensus 25 ~e~~A~l~E~r~-DyNr~HF~R~~ef~~~~~~~~~e-~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~l 102 (323)
T cd01047 25 EEFEAMLAEFKA-DYNRHHFVRNDEFDQAADKIDPE-LRQIFLEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRL 102 (323)
T ss_pred HHHHHHHHHHHh-CcccccccCCchhhhhhhhCCHH-HHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHH
Confidence 566777776654 88877788888888866544222 33344555566665556788888887666 7888888
Q ss_pred HCCC---CCCcee
Q 028513 150 FDAD---HDGKIT 159 (208)
Q Consensus 150 ~D~~---~~G~I~ 159 (208)
+..| +-|+|.
T Consensus 103 MaRDEARHAGFlN 115 (323)
T cd01047 103 MARDEARHAGFLN 115 (323)
T ss_pred HhhhHHHHhhhHH
Confidence 8666 456553
No 228
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=34.01 E-value=1.5e+02 Score=20.14 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=36.3
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHH
Q 028513 85 ACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALI 140 (208)
Q Consensus 85 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 140 (208)
.|..+...++..++.+++..+|...|.. .....+..++..+.. .+.++.+
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGve-Ve~~~~~lf~~~L~G-----Kdi~eLI 55 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVE-VDDEKLNKVISELEG-----KDVEELI 55 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCC-ccHHHHHHHHHHHcC-----CCHHHHH
Confidence 3445555667789999999999999987 777777777776632 4556553
No 229
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=33.84 E-value=27 Score=29.79 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=56.3
Q ss_pred CCCCcccHHHHHHHHHHhCCC---CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHCC---------CCCCcee
Q 028513 92 DNDGVVLRSELEALLIRLGAD---PPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFFDA---------DHDGKIT 159 (208)
Q Consensus 92 ~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~D~---------~~~G~I~ 159 (208)
+|+...+..||..+....... .+.-+.++.+-+.+|.|.+|.|+.+|=-.++++-.+.-|. ..|..|+
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~dD~~It 119 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHGDDKHIT 119 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccCCcccee
Confidence 566678888886655433221 1444667788888999999999998766663333322221 1456799
Q ss_pred HHHHHHHHHHhCCCCCCHHHH
Q 028513 160 AEELFGVFTKLGDELCTLDDC 180 (208)
Q Consensus 160 ~~e~~~~l~~~g~~~~s~~~~ 180 (208)
.+|+=.++......+.+.++.
T Consensus 120 VedLWeaW~~Sev~nWT~e~t 140 (575)
T KOG4403|consen 120 VEDLWEAWKESEVHNWTNERT 140 (575)
T ss_pred HHHHHHHHHhhhhhcchHHHH
Confidence 999888877654255665553
No 230
>PF13551 HTH_29: Winged helix-turn helix
Probab=33.52 E-value=1.4e+02 Score=19.50 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH-HH-hCCCCCCHHHHHHHHHh
Q 028513 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALL-IR-LGADPPTQEEVKSMLSE 125 (208)
Q Consensus 74 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l-~~-~~~~~~~~~~~~~~~~~ 125 (208)
+++++.+.+.+.+.....++.+..+..++...| .. .+.. ++...+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~-~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGID-VSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCcc-CCHHHHHHHHHH
Confidence 566788888888877655544578888998865 43 3555 888888887754
No 231
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=33.36 E-value=36 Score=26.28 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=10.5
Q ss_pred cccHHHHHHHHHHHHHHHCCC
Q 028513 133 YIPLEALISRLKETFDFFDAD 153 (208)
Q Consensus 133 ~i~~~eF~~~~~~~F~~~D~~ 153 (208)
.++-+||-..--.+=+++|++
T Consensus 159 PmTkEEyearQSvIRrVvDpE 179 (225)
T PF10500_consen 159 PMTKEEYEARQSVIRRVVDPE 179 (225)
T ss_pred CCCHHHHHHHHhhheeeecCC
Confidence 456666655433333455543
No 232
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=33.15 E-value=91 Score=19.80 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=32.5
Q ss_pred eHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCC-CCceeHHHHHHHH
Q 028513 159 TAEELFGVFTKLGDELCTLDDCRGMIALVDKNG-DGFVCFEDFSRMM 204 (208)
Q Consensus 159 ~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~-dg~i~~~eF~~~l 204 (208)
+.++|...| .| ...+.+.+...+..++.+. =|.++.++|++++
T Consensus 43 ~i~~le~~L--~G-~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEAL--IG-CPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHH--TT-CBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--Hh-cCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 366777766 45 7789999999999986653 3578999998875
No 233
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.03 E-value=1.1e+02 Score=22.86 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHH
Q 028513 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSML 123 (208)
Q Consensus 78 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 123 (208)
..+.++++|..||++.--..+.+++..++..-+.- -....++.++
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~II-Rnr~KI~Avi 95 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGII-RNRGKIEATI 95 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccch-hhHHHHHHHH
Confidence 56689999999999988888999999999876664 4444444443
No 234
>PRK01844 hypothetical protein; Provisional
Probab=33.00 E-value=1.3e+02 Score=18.88 Aligned_cols=32 Identities=19% Similarity=0.527 Sum_probs=29.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 028513 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (208)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (208)
+.-|+.+-++..+.++|.. +++..++.+++.+
T Consensus 36 NPpine~mir~Mm~QMGqk-PSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQK-PSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 4689999999999999999 9999999998876
No 235
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=32.91 E-value=37 Score=17.28 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=5.4
Q ss_pred eeHHHHHHHHHh
Q 028513 195 VCFEDFSRMMEL 206 (208)
Q Consensus 195 i~~~eF~~~l~~ 206 (208)
|+.++|..+|..
T Consensus 17 ls~eeir~FL~~ 28 (30)
T PF08671_consen 17 LSKEEIREFLEF 28 (30)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 555555555543
No 236
>COG5562 Phage envelope protein [General function prediction only]
Probab=32.39 E-value=39 Score=23.95 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=19.2
Q ss_pred HHHHhHcCCCCCceeHHHHHHHHHh
Q 028513 182 GMIALVDKNGDGFVCFEDFSRMMEL 206 (208)
Q Consensus 182 ~l~~~~D~~~dg~i~~~eF~~~l~~ 206 (208)
.+...+..+..|+.+|+||+..+..
T Consensus 76 ~i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 76 LIKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHh
Confidence 3444555678999999999998764
No 237
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=32.34 E-value=64 Score=26.42 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-------HHHHH
Q 028513 75 SLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR-------LKETF 147 (208)
Q Consensus 75 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-------~~~~F 147 (208)
..++++.+.+-|+. |.|..-.+--+||.+....+... ....-++-+.+.+-..=+|.|=|.|...- +.++|
T Consensus 33 ~~~e~~A~l~E~r~-DyNr~HF~R~~ef~~~~~~l~~e-~r~~FidFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F 110 (337)
T TIGR02029 33 VENEWDAMLAEMKA-DYNRHHFVRNEEFDQSWEHIDGE-LRQAFIEFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELF 110 (337)
T ss_pred hHHHHHHHHHHHHh-CccccccccChhhhcchhhCCHH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHH
Confidence 34677777777754 88877788888888865443222 22334555555665555788888887666 78888
Q ss_pred HHHCCC---CCCcee
Q 028513 148 DFFDAD---HDGKIT 159 (208)
Q Consensus 148 ~~~D~~---~~G~I~ 159 (208)
..+..| +-|+|.
T Consensus 111 ~~MaRDEARHAGFlN 125 (337)
T TIGR02029 111 QLMARDEARHAGFLN 125 (337)
T ss_pred HHHhhhhHHHhhhHH
Confidence 888666 456553
No 238
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.30 E-value=1.3e+02 Score=18.65 Aligned_cols=33 Identities=6% Similarity=0.375 Sum_probs=29.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 028513 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD 127 (208)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d 127 (208)
+.-|+.+-++..+..+|.. +++..++.+++.+-
T Consensus 36 NPpine~~iR~M~~qmGqK-pSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQK-PSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 5689999999999999999 99999999887653
No 239
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=31.19 E-value=1.7e+02 Score=19.67 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=36.4
Q ss_pred CcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHH-HHhCCCCCCHHHHHHHHHhHcCCCCC-ceeHHHHHHHHH
Q 028513 132 GYIPLEALISRLKETFDFFDADHDGKITAEELFGVF-TKLGDELCTLDDCRGMIALVDKNGDG-FVCFEDFSRMME 205 (208)
Q Consensus 132 g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l-~~~g~~~~s~~~~~~l~~~~D~~~dg-~i~~~eF~~~l~ 205 (208)
+.-+..+|+..+..+...+-.-|. .|+..++...+ ..+. ...+.++..+....+- .+++++++..|.
T Consensus 39 ~~~sv~~y~~~~~~i~~~L~~~g~-~i~d~~~v~~iL~~Lp------~~y~~~~~~i~~~~~~~~~t~~el~~~L~ 107 (119)
T PF14223_consen 39 DGESVDEYISRLKEIVDELRAIGK-PISDEDLVSKILRSLP------PSYDTFVTAIRNSKDLPKMTLEELISRLL 107 (119)
T ss_pred ccccHHHHHHHHHHhhhhhhhcCC-cccchhHHHHHHhcCC------chhHHHHHHHHhcCCCCcCCHHHHHHHHH
Confidence 335667887777777766654443 45555544443 2222 3344444444322222 368888887765
No 240
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=31.06 E-value=1.6e+02 Score=19.55 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=34.8
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 028513 71 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD 127 (208)
Q Consensus 71 ~~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d 127 (208)
.+.||.+++.++...+.. .+..-++..++..++...-...++.+++.++-..+-
T Consensus 33 ~r~Ltd~ev~~Va~~L~~---~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~La 86 (96)
T PF11829_consen 33 RRRLTDDEVAEVAAELAA---RGDPPVDRIDIGVAITRVTDELPTPEDIERVRARLA 86 (96)
T ss_dssp TTTS-HHHHHHHHHHHHH---HTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 456888888877776654 333444778888888777555588888888766553
No 241
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=30.46 E-value=1.3e+02 Score=21.75 Aligned_cols=81 Identities=10% Similarity=0.197 Sum_probs=49.2
Q ss_pred CCCcccHHHHHHHHHHhCC-CCCCHHHHHHHHHhhccCCCCcccHHHHHHH-HHHHHHHHCCCCCCceeHHHHHHHHHHh
Q 028513 93 NDGVVLRSELEALLIRLGA-DPPTQEEVKSMLSEVDREGDGYIPLEALISR-LKETFDFFDADHDGKITAEELFGVFTKL 170 (208)
Q Consensus 93 ~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-~~~~F~~~D~~~~G~I~~~e~~~~l~~~ 170 (208)
.+-.|...-+.+++..+-. ...-..+.+.++..+. -||+.+ -..+=+.++.+..-+|..+.+..+|..+
T Consensus 9 de~sLPkAtv~KmIke~lP~d~rvakeareliincC---------vEFI~liSsEAneic~~e~KKTIa~EHV~KALe~L 79 (156)
T KOG0871|consen 9 DELSLPKATVNKMIKEMLPKDVRVAKEARELIINCC---------VEFINLISSEANEICNKEAKKTIAPEHVIKALENL 79 (156)
T ss_pred ccccCcHHHHHHHHHHhCCcccccchHHHHHHHHHH---------HHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHc
Confidence 3456677777777766532 1011234444444332 356666 5566677888888899999999999999
Q ss_pred CCCCCCHHHHHHH
Q 028513 171 GDELCTLDDCRGM 183 (208)
Q Consensus 171 g~~~~s~~~~~~l 183 (208)
| ..---+++..+
T Consensus 80 g-F~eYiee~~~v 91 (156)
T KOG0871|consen 80 G-FGEYIEEAEEV 91 (156)
T ss_pred c-hHHHHHHHHHH
Confidence 8 54333333333
No 242
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=29.80 E-value=1.6e+02 Score=20.23 Aligned_cols=49 Identities=12% Similarity=0.084 Sum_probs=36.6
Q ss_pred HHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHH
Q 028513 147 FDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFS 201 (208)
Q Consensus 147 F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~ 201 (208)
|-+.-..++..+|.+++..+|...| ..+.+..+..+++.+.. .+.++.+
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaG-vevd~~~~~~f~~~L~g-----K~i~eLI 55 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVG-ADADDDRIELLLSEVKG-----KDITELI 55 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcC-CcccHHHHHHHHHHHcC-----CCHHHHH
Confidence 3344445667799999999999999 88888888888888732 3455555
No 243
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=29.62 E-value=2.3e+02 Score=20.90 Aligned_cols=56 Identities=21% Similarity=0.394 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHCCCCC
Q 028513 97 VLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFFDADHD 155 (208)
Q Consensus 97 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~D~~~~ 155 (208)
|+..+...-|+..|.. ....+...++..+-.++.|.+ |..|. .+..+...||.|++
T Consensus 2 ~ns~~~~~~lka~gi~-tnskqyka~~~~mm~~~~~~~-y~~~~-~iknlm~~yd~dgd 57 (186)
T PF12995_consen 2 INSSSVQEQLKAAGIN-TNSKQYKAVMSEMMSAGEGAM-YTNIQ-GIKNLMSQYDKDGD 57 (186)
T ss_pred CChHHHHHHHHhcCCC-cChHHHHHHHHHHhcCCCCce-eehHH-HHHHHHHhcCCCCc
Confidence 4556677778888887 777887777777766666654 44442 27888888987764
No 244
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=29.37 E-value=1.6e+02 Score=20.50 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 028513 139 LISRLKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 187 (208)
Q Consensus 139 F~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~ 187 (208)
|+.-+..+|++|-.+ .|+.+.+-.++....+..++..+++.+...+
T Consensus 35 f~~Kl~~Il~mFl~~---eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 35 FLDKLIKILKMFLND---EIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 333466666666433 4666666666665521566666655554443
No 245
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.34 E-value=1.1e+02 Score=17.15 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=21.4
Q ss_pred CCCcee-HHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 028513 154 HDGKIT-AEELFGVFTKLGDELCTLDDCRGMIALV 187 (208)
Q Consensus 154 ~~G~I~-~~e~~~~l~~~g~~~~s~~~~~~l~~~~ 187 (208)
..|.|+ ..++.+.|...| ..+++..++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g-~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAG-FRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcC-cccCHHHHHHHHHHc
Confidence 346665 455555555667 788888887777653
No 246
>PHA01351 putative minor structural protein
Probab=29.25 E-value=4.3e+02 Score=24.58 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=56.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHhCCC
Q 028513 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFFDADHDGKITAEELFGVFTKLGDE 173 (208)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~ 173 (208)
.|.++.+++..-++.+|.. ...++.+...+-.. +..+-++.++....+.| .|+..|+..-|++++
T Consensus 590 KGY~d~qq~ksElk~LGid---Ke~i~klin~Y~ql----~qt~~eIkYIqe~LK~f------~IspkeAitELKKL~-- 654 (1070)
T PHA01351 590 KGYLSLDEIKKQFKAIGII---KEYEDAFINFYNQE----LQISAFLTILKSQLRQF------QIDPKEAETELKKLN-- 654 (1070)
T ss_pred hccccHHHHHHHHHhhccc---hhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHc------ccCHHHHHHHHHHcC--
Confidence 5899999999999999965 55555554444221 34444555566666666 688899999999988
Q ss_pred CCCHHHHHHHHHhH
Q 028513 174 LCTLDDCRGMIALV 187 (208)
Q Consensus 174 ~~s~~~~~~l~~~~ 187 (208)
++++-++.++..+
T Consensus 655 -ISdaLAn~IV~eY 667 (1070)
T PHA01351 655 -INEYLANQIIQEE 667 (1070)
T ss_pred -chHHHHHHHHHHH
Confidence 8888888887766
No 247
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=29.14 E-value=1.2e+02 Score=18.25 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=22.1
Q ss_pred CceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHH
Q 028513 156 GKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 203 (208)
Q Consensus 156 G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~ 203 (208)
..++.+|...++..+-...+++.++..++..+-..+ .+.+|...+
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al~~kg---et~~Eiag~ 57 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIAAFLMALRMKG---ETPEEIAGF 57 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH------HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---cCHHHHHHH
Confidence 457777777777766434667777666665553222 455554443
No 248
>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]
Probab=28.98 E-value=40 Score=29.91 Aligned_cols=58 Identities=17% Similarity=0.142 Sum_probs=35.0
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh--ccCCCCcccHHHHHHHHHHHHH
Q 028513 85 ACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV--DREGDGYIPLEALISRLKETFD 148 (208)
Q Consensus 85 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~--d~~~~g~i~~~eF~~~~~~~F~ 148 (208)
+|+..|.|+..+|+...+.+||.++... +++-+... |....=-|+|.|...++...|+
T Consensus 591 lFHqvtedg~p~lDlaHvl~CLNKLDAG------~~EkI~LvSrDE~t~IIvSY~ELK~~le~t~~ 650 (655)
T KOG3741|consen 591 LFHQVTEDGKPWLDLAHVLQCLNKLDAG------IQEKILLVSRDELTCIIVSYKELKTILEKTFR 650 (655)
T ss_pred hheEeccCCChhhhHHHHHHHhhhcccc------chhheeEeccCCCcEEEEEHHHHHHHHHHhhc
Confidence 5667777877888888888888877543 11111122 2222234677777766666665
No 249
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=28.77 E-value=85 Score=20.05 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=28.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 165 GVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 165 ~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
.+|....+-.+.++..+.+-+.++.-....|+++|++.+..
T Consensus 36 ~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 36 TWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44544422677777777777777766666799999997753
No 250
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=28.26 E-value=1.7e+02 Score=19.17 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhccC-----CCCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHH
Q 028513 102 LEALLIRLGADPPTQEEVKSMLSEVDRE-----GDGYIPLEALISRLKETFDFFDADHDGKITAEELF 164 (208)
Q Consensus 102 ~~~~l~~~~~~~~~~~~~~~~~~~~d~~-----~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~ 164 (208)
++.+|+.-|.. +..+.+...+..++.- ..|.|+.+.+...=+.+=+.|-..+.+.|....|.
T Consensus 14 Lk~lLk~rGi~-v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kvG~~l~~~~~~~~~~~Ip~~~~~ 80 (90)
T PF02337_consen 14 LKHLLKERGIR-VKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKVGEELKRYYAEQGPEKIPIQAFP 80 (90)
T ss_dssp HHHHHHCCT-----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHHHHHHHHHHHHCSTTTS-CHHHH
T ss_pred HHHHHHHcCee-ecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 44444444666 6666666655554432 25667777776652222222333455566655443
No 251
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=28.11 E-value=2.7e+02 Score=23.82 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=49.5
Q ss_pred CcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH---------HHHHHHHHCCCCCCc---eeHHH
Q 028513 95 GVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR---------LKETFDFFDADHDGK---ITAEE 162 (208)
Q Consensus 95 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~---------~~~~F~~~D~~~~G~---I~~~e 162 (208)
-.+....|+++|...... .+.-++..+-..+|...++.|+-=||-.+ +..-|+.+-.-+-|+ ++.+|
T Consensus 189 ~ivPW~~F~q~L~~~Hpi-~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw~tllkNWq~LavtHPGYmAFLTYDE 267 (563)
T KOG1785|consen 189 TIVPWKTFRQALHKVHPI-SSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWKTLLKNWQTLAVTHPGYMAFLTYDE 267 (563)
T ss_pred ccccHHHHHHHHHhcCCC-cchhHHHHhhceeccccccceeeehhhhHHHhhccHHHHHHhhhhhhccCCceeEEeeHHH
Confidence 467777788888776544 44456666667778888888876666555 444455555555554 78888
Q ss_pred HHHHHHH
Q 028513 163 LFGVFTK 169 (208)
Q Consensus 163 ~~~~l~~ 169 (208)
.+.-|..
T Consensus 268 Vk~RLqk 274 (563)
T KOG1785|consen 268 VKARLQK 274 (563)
T ss_pred HHHHHHH
Confidence 8877764
No 252
>PLN02223 phosphoinositide phospholipase C
Probab=27.96 E-value=3.4e+02 Score=24.23 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHH---HHh-CCCCCCHHHHHHHHHhhccCC--------CCcccHHHHHHH
Q 028513 81 ELVQACKLLDRDNDGVVLRSELEALL---IRL-GADPPTQEEVKSMLSEVDREG--------DGYIPLEALISR 142 (208)
Q Consensus 81 ~l~~~F~~~D~~~~g~i~~~e~~~~l---~~~-~~~~~~~~~~~~~~~~~d~~~--------~g~i~~~eF~~~ 142 (208)
.+..+|..+- .++|.++.+.+..+| ... |....+..+++.++..+-... .+.++.+.|..+
T Consensus 17 ~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~ 89 (537)
T PLN02223 17 LILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEF 89 (537)
T ss_pred HHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHH
Confidence 4667787774 567899999999988 333 222255667777766543221 256888888766
No 253
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=27.59 E-value=4.4e+02 Score=23.45 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=36.3
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCC
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKN 190 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~ 190 (208)
+..+.-.++.-|.|.++.+|..++|..++ +.-..-+++++++.+..|
T Consensus 457 ~~Dl~~~verag~~~~~~ee~e~~l~dI~-y~~nSGDv~eIL~Q~~~n 503 (548)
T PF02459_consen 457 SRDLLATVERAGRGELEEEEIEQFLADIA-YRDNSGDVEEILRQAALN 503 (548)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHHHhc-ccccCCCHHHHHHHhhcc
Confidence 56666677888999999999999999988 555555677777776444
No 254
>PHA01351 putative minor structural protein
Probab=27.49 E-value=5.1e+02 Score=24.14 Aligned_cols=79 Identities=13% Similarity=0.128 Sum_probs=53.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHhCC
Q 028513 93 NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFFDADHDGKITAEELFGVFTKLGD 172 (208)
Q Consensus 93 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~ 172 (208)
.-|.++..+....|+..|.. ......+...+. ..+..++++..+....+.| .|+..++..-|+++|
T Consensus 493 skGi~DqkkIke~LKa~gfn---ks~~d~~L~~~~----n~a~iesqIK~LQ~qL~nF------~IS~QD~EkELKkLg- 558 (1070)
T PHA01351 493 SLGIFDQKKIKEELKANKFN---EQVALQILESEL----QFAQLQNQLKEYQFKLNNF------LISPQDLEKDLKHLG- 558 (1070)
T ss_pred HcccccHHHHHHHHHhcCcc---HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhc------cCCHHHHHHHHHHcC-
Confidence 35888888888888888765 555555544432 1234445544455555555 699999999999988
Q ss_pred CCCCHHHHHHHHHhH
Q 028513 173 ELCTLDDCRGMIALV 187 (208)
Q Consensus 173 ~~~s~~~~~~l~~~~ 187 (208)
+++.-++.++.++
T Consensus 559 --~s~alIqaiI~Ey 571 (1070)
T PHA01351 559 --FDSAIISALIYEN 571 (1070)
T ss_pred --CCHHHHHHHHHHH
Confidence 7777777665553
No 255
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=27.25 E-value=1.7e+02 Score=24.17 Aligned_cols=82 Identities=21% Similarity=0.248 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH-------HHHHHH
Q 028513 76 LDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR-------LKETFD 148 (208)
Q Consensus 76 ~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~-------~~~~F~ 148 (208)
.++++.+..-|+. |.|..-.+--+||.+....+... ....-++-+.+.+-..=+|.|=|.|...- +.++|.
T Consensus 40 ~~e~~A~l~Efr~-DyNr~HF~R~~eF~~~~~~l~~~-~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~ 117 (357)
T PLN02508 40 MAEFEALLQEFKT-DYNQTHFVRNEEFKAAADKIQGP-LRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFT 117 (357)
T ss_pred HHHHHHHHHHHHh-CccccccccChhhccchhhCCHH-HHHHHHHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHH
Confidence 3566777776654 88877788888888766544322 23334555666666666888888888775 788888
Q ss_pred HHCCC---CCCcee
Q 028513 149 FFDAD---HDGKIT 159 (208)
Q Consensus 149 ~~D~~---~~G~I~ 159 (208)
.+..| +-|+|.
T Consensus 118 lMaRDEARHAGFlN 131 (357)
T PLN02508 118 LMSRDEARHAGFLN 131 (357)
T ss_pred HhCchhHHHHhHHH
Confidence 88766 355543
No 256
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=26.76 E-value=2.7e+02 Score=20.74 Aligned_cols=99 Identities=11% Similarity=0.185 Sum_probs=53.9
Q ss_pred cccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHh-CCCC
Q 028513 96 VVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFFDADHDGKITAEELFGVFTKL-GDEL 174 (208)
Q Consensus 96 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~-g~~~ 174 (208)
.|+..||+.-.+.-... .-+..+ +..+-.-..|.++-.+| .+.++..+-.+ -|+.+-|..+...+ .+..
T Consensus 3 IIdFnelKNKvkdkDiD-KFE~Yi---Y~ly~~~a~Gklsm~dF---sk~I~~YmeeN---NISqeKf~niQkk~mERYG 72 (186)
T PF12983_consen 3 IIDFNELKNKVKDKDID-KFEEYI---YSLYYDVAEGKLSMADF---SKKIMEYMEEN---NISQEKFLNIQKKFMERYG 72 (186)
T ss_pred eecHHHHhhhcccccHH-HHHHHH---HHHHHHHhcCcccHHHH---HHHHHHHHHHc---CCcHHHHHHHHHHHHHHhC
Confidence 45666666554432222 112222 22222225678888888 45555555433 38888887775543 1134
Q ss_pred CCHHHHHHHHHhHcCCCCC----ceeHHHHHHHH
Q 028513 175 CTLDDCRGMIALVDKNGDG----FVCFEDFSRMM 204 (208)
Q Consensus 175 ~s~~~~~~l~~~~D~~~dg----~i~~~eF~~~l 204 (208)
+.+.+++.-++.+..|-++ ..+|+.+...+
T Consensus 73 fd~~~iE~q~K~~Gid~~~~~~~~~~~e~~rk~~ 106 (186)
T PF12983_consen 73 FDPSEIEKQMKSMGIDMSSLNSSNNDYENIRKTL 106 (186)
T ss_pred CCHHHHHHHHHHcCCCcccccccCCCHHHHHhhh
Confidence 7788888888887655332 24466655443
No 257
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=26.71 E-value=1.9e+02 Score=18.81 Aligned_cols=49 Identities=8% Similarity=0.132 Sum_probs=28.2
Q ss_pred CceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 156 GKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 156 G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
-.|.-.+|+..|...- ...+..+...|=.-+|...++.|+-=||--+.+
T Consensus 21 ~IVPW~~F~~~L~~~h-~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVH-PISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp SEEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhc-CCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 3466666666666554 223334555666667777777777777765543
No 258
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=25.91 E-value=1.3e+02 Score=21.83 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCCC----C-cccHHHHHHHHHHhCCC---CCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHH
Q 028513 81 ELVQACKLLDRDND----G-VVLRSELEALLIRLGAD---PPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFD 148 (208)
Q Consensus 81 ~l~~~F~~~D~~~~----g-~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~ 148 (208)
.+.+.|+.|-.-++ | .++-..|..++...+.- .++.......|..+--..-..++|++|...+.++=.
T Consensus 13 ~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~ 88 (180)
T KOG4070|consen 13 GLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELAT 88 (180)
T ss_pred hHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHH
Confidence 35555555554443 3 56677788888765431 133344444555554444567888888666555443
No 259
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.86 E-value=1.7e+02 Score=26.78 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 028513 79 NYELVQACKLLDRDNDGVVLRSELEALLIRL 109 (208)
Q Consensus 79 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~ 109 (208)
..+++-.|...|. .+|.++.+++..++...
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~ 46 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSS 46 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHH
Confidence 4467888888887 78999999988887654
No 260
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=25.57 E-value=2.5e+02 Score=19.81 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=30.0
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCC
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKNG 191 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~ 191 (208)
+..+-+.+....-..-..+.=..+|+.-| ++++||++++.......
T Consensus 6 i~~A~~FL~~p~V~~sp~~~k~~FL~sKG---Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 6 IEQAVKFLQDPKVRNSPLEKKIAFLESKG---LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHCTTTCCCS-HHHHHHHHHHCT-----HHHHHHHHHHHT--S
T ss_pred HHHHHHHhCCcccccCCHHHHHHHHHcCC---CCHHHHHHHHHhcCCcc
Confidence 44455555555555667777888888877 99999999999885443
No 261
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=25.55 E-value=1.5e+02 Score=17.48 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccH
Q 028513 74 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPL 136 (208)
Q Consensus 74 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~ 136 (208)
|++.....|..+|.... ..+.+...++...|. .+...+..++..+.. .|.|.+
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~------vs~~tvt~ml~~L~~--~GlV~~ 54 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLG------VSPPTVTEMLKRLAE--KGLVEY 54 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT------S-HHHHHHHHHHHHH--TTSEEE
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC------CChHHHHHHHHHHHH--CCCEEe
Confidence 34456667777887776 568899999999883 667777777777643 344443
No 262
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=25.43 E-value=43 Score=30.27 Aligned_cols=63 Identities=21% Similarity=0.402 Sum_probs=47.3
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCH---------HHHHHHHHhHcCCCC---------------------
Q 028513 143 LKETFDFFDADHDGKITAEELFGVFTKLGDELCTL---------DDCRGMIALVDKNGD--------------------- 192 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~---------~~~~~l~~~~D~~~d--------------------- 192 (208)
...+|..+|.+.++.++..+|......++. .+-. .+...++..+|.+++
T Consensus 439 ~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~-vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~ 517 (975)
T KOG2419|consen 439 AKRILSIVDYEEDFKLSFSEFSDLSFAFGN-VVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKK 517 (975)
T ss_pred hhhcccccccccCceEeeehHHHHHHHHHH-HHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccc
Confidence 666778889999999999888888776652 2211 124567778888888
Q ss_pred --CceeHHHHHHHHHh
Q 028513 193 --GFVCFEDFSRMMEL 206 (208)
Q Consensus 193 --g~i~~~eF~~~l~~ 206 (208)
|.|+.+|.+.++++
T Consensus 518 s~~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 518 SFGVVTVDELVALLAL 533 (975)
T ss_pred ccCeeEHHHHHHHHHH
Confidence 89999999988874
No 263
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.32 E-value=3.4e+02 Score=21.42 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHhhcc--CCCCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 028513 114 PTQEEVKSMLSEVDR--EGDGYIPLEALISRLKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 187 (208)
Q Consensus 114 ~~~~~~~~~~~~~d~--~~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~ 187 (208)
++.++.+.++..... +.+|.++ +.|..+++.+|.. ||.+++..+...+. -++++-..|+..|
T Consensus 69 LsDeekR~~YDetG~idd~~~d~~-~~~~e~~~~iyk~--------VteedIeef~a~Y~---gSEeEk~Dl~~~Y 132 (264)
T KOG0719|consen 69 LSDEEKRAVYDETGSIDDESGDID-EDWLEFWRAIYKK--------VTEEDIEEFEANYQ---GSEEEKKDLLKLY 132 (264)
T ss_pred hhHHHHHHHHhccCCCCCccchhh-hHHHHHHHHHHhh--------cccccHHHHHHHhc---ccHHHHHHHHHHH
Confidence 566777776644311 2233333 2344446666653 33444444443332 3555555555555
No 264
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=24.76 E-value=92 Score=19.46 Aligned_cols=12 Identities=25% Similarity=0.171 Sum_probs=6.6
Q ss_pred CCcccHHHHHHH
Q 028513 131 DGYIPLEALISR 142 (208)
Q Consensus 131 ~g~i~~~eF~~~ 142 (208)
.|.|.-+||-.+
T Consensus 28 ~Gkv~~ee~n~~ 39 (75)
T TIGR02675 28 SGKLRGEEINSL 39 (75)
T ss_pred cCcccHHHHHHH
Confidence 455666665444
No 265
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=24.65 E-value=2.7e+02 Score=20.22 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=33.3
Q ss_pred HHHHHHHH-CCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHc
Q 028513 143 LKETFDFF-DADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD 188 (208)
Q Consensus 143 ~~~~F~~~-D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D 188 (208)
+..+|+.| |.+.+-..+.+++..-|...| ..+++|...+.-++
T Consensus 5 L~yLfE~y~~~~~~~~~d~~~L~~~L~~aG---F~~~eI~~Al~WL~ 48 (155)
T PF04361_consen 5 LMYLFENYIDFESDACPDQDDLTRELSAAG---FEDEEINKALDWLE 48 (155)
T ss_pred HHHHHHHHcCCccccCCCHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 45577766 554677889999999999988 88888887766554
No 266
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=24.55 E-value=1.7e+02 Score=21.93 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=27.7
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 028513 90 DRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEV 126 (208)
Q Consensus 90 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 126 (208)
.-|.+|+++.++|...+..-+.. ++.+.+..+...-
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~-~t~~~l~~vV~~d 62 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKW-VTRELLEAVVESD 62 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCC-CCHHHHHHHHHcC
Confidence 34568999999999998765544 7888888877653
No 267
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=24.21 E-value=4.5e+02 Score=23.25 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=51.3
Q ss_pred hhhhcCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 69 DMSADISLDMNYELVQACKLLD-RDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 69 ~~~~~ls~~~~~~l~~~F~~~D-~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
++..+|-++...-|.++|...- +..|--|+.+.+.++=. +|.. +++...+.+-..+-.-+.|.|+=++.+.-
T Consensus 78 ~v~kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~-~g~~-~~~~~~e~lr~~lh~ykkg~idgddl~~e 150 (533)
T TIGR00470 78 HIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIEN-LGID-IDDEKKERLREVFHLYKKGAIDGDDLVFE 150 (533)
T ss_pred HHHHhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHH-hCCC-CChhHHHHHHHHHHHhhcCCCccchhHHH
Confidence 3567788888899999998855 33566788888888766 8887 88876665544444455677777777544
No 268
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=24.15 E-value=1.7e+02 Score=20.15 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=22.3
Q ss_pred CCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 028513 154 HDGKITAEELFGVFTKLGDELCTLDDCRGMIALV 187 (208)
Q Consensus 154 ~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~ 187 (208)
..|.++.+++.+-+...+ ..++..++..++..+
T Consensus 25 ~~~~~tl~~Ia~~i~~~~-s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEG-STLTRADIEAVLNAL 57 (124)
T ss_pred ecCccCHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 356777777777666556 667777776666655
No 269
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=24.11 E-value=1.6e+02 Score=19.05 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=19.1
Q ss_pred eeHHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 028513 158 ITAEELFGVFTKLGDELCTLDDCRGMIALV 187 (208)
Q Consensus 158 I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~ 187 (208)
|+.+++.++..-.. ..+++++++.+...+
T Consensus 1 i~~~~v~~lA~La~-L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLAR-LELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 46677777766656 778888866654443
No 270
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=24.10 E-value=5.5e+02 Score=23.38 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=14.6
Q ss_pred HHHHHHHHCCC-CCCceeHHHHHHHHHHhC
Q 028513 143 LKETFDFFDAD-HDGKITAEELFGVFTKLG 171 (208)
Q Consensus 143 ~~~~F~~~D~~-~~G~I~~~e~~~~l~~~g 171 (208)
+..+.++||.- .-..++..-+...+...|
T Consensus 174 ~~~A~~lf~~m~~~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 174 LIDARRLFDEMPERNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHhcCCCCCeeeHHHHHHHHHHCc
Confidence 44444444432 224566666666665555
No 271
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=23.98 E-value=4.8e+02 Score=23.22 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=51.4
Q ss_pred hhhhcCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHH
Q 028513 69 DMSADISLDMNYELVQACKLLD-RDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISR 142 (208)
Q Consensus 69 ~~~~~ls~~~~~~l~~~F~~~D-~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 142 (208)
++..+|-++...-|.+.|...- +..|--|+.+.+.++=.-+|.. ++.+..+.+-..+-.-+.|.|+=++.+.-
T Consensus 78 ~~~~qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~~-~~~~~~e~l~~~lh~ykkg~~~gddl~~e 151 (529)
T PRK06253 78 DIYKQFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGRD-LSEEKIESLREVLHSYKKGEIDGDDLVLE 151 (529)
T ss_pred HHHHhhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCCC-CChhHHHHHHHHHHHhhcCCCccchhHHH
Confidence 3567788888889999998855 3356678888888887778887 88877555544444445677777776544
No 272
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=23.84 E-value=2.2e+02 Score=18.68 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=50.4
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHH
Q 028513 92 DNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFFDADHDGKITAEELFGVFT 168 (208)
Q Consensus 92 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~ 168 (208)
..|+.|+..++...+. ++......+-..+. .+.++..-+..+++-+...-|.++.-.|+.+.+..++.
T Consensus 27 ~~Na~l~~~~l~~~~~------l~~~~~~~l~~~~~---~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 27 KCNAQLPGEELRKYCP------LSSEAKKLLEQAAE---KLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred CccccCCHHHHHhHcC------CCHHHHHHHHHHHH---HcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 3578999999998852 33443333333332 35589999988899999999999999999999988763
No 273
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=23.51 E-value=1.7e+02 Score=19.96 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=19.2
Q ss_pred eHHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 028513 159 TAEELFGVFTKLGDELCTLDDCRGMIALV 187 (208)
Q Consensus 159 ~~~e~~~~l~~~g~~~~s~~~~~~l~~~~ 187 (208)
+.+|++.++.... ..+++++++.|++..
T Consensus 80 ~~dElrai~~~~~-~~~~~e~l~~ILd~l 107 (112)
T PRK14981 80 TRDELRAIFAKER-YTLSPEELDEILDIV 107 (112)
T ss_pred CHHHHHHHHHHhc-cCCCHHHHHHHHHHH
Confidence 4667777777765 667777777776654
No 274
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=23.23 E-value=1.4e+02 Score=17.26 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=5.5
Q ss_pred CCcccHHHHHHH
Q 028513 131 DGYIPLEALISR 142 (208)
Q Consensus 131 ~g~i~~~eF~~~ 142 (208)
+|.|+.+||-.-
T Consensus 21 ~GrL~~~Ef~~R 32 (53)
T PF08044_consen 21 EGRLSLDEFDER 32 (53)
T ss_pred CCCCCHHHHHHH
Confidence 344555554433
No 275
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=23.15 E-value=2.9e+02 Score=20.39 Aligned_cols=72 Identities=21% Similarity=0.251 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHhCCC---CCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHH
Q 028513 74 ISLDMNYELVQACKLLDRD---NDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRLKETFDFF 150 (208)
Q Consensus 74 ls~~~~~~l~~~F~~~D~~---~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~F~~~ 150 (208)
+..+++..+...+...|+. --.++...+|..+...+-. ..++..+..-+.. ..|+...++..+..++...
T Consensus 15 Ip~~~i~~i~~~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~----~pE~~~l~~yL~~---~gldv~~~i~~i~~~l~~~ 87 (179)
T PF06757_consen 15 IPMEEIQDIVQRYYLEDAEFQAAVRYLNSSEFKQLWQQLEA----LPEVKALLDYLES---AGLDVYYYINQINDLLGLP 87 (179)
T ss_pred cCHHHHHHHHHHHHHcCHHHHHHHHHHcChHHHHHHHHHHc----CHHHHHHHHHHHH---CCCCHHHHHHHHHHHHcCC
Confidence 3344555555544444432 0123444455555554422 2344444444432 2266666666666666544
Q ss_pred CC
Q 028513 151 DA 152 (208)
Q Consensus 151 D~ 152 (208)
..
T Consensus 88 ~~ 89 (179)
T PF06757_consen 88 PL 89 (179)
T ss_pred cC
Confidence 33
No 276
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=22.97 E-value=1.4e+02 Score=22.35 Aligned_cols=37 Identities=27% Similarity=0.239 Sum_probs=23.3
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhc
Q 028513 90 DRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD 127 (208)
Q Consensus 90 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d 127 (208)
..+.+|++..+|+...+..-+.. ++.+++..+...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~-~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLW-VTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT---HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCC-CCHHHHHHHHhhCC
Confidence 45668999999999999887666 78888888876543
No 277
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.91 E-value=1.5e+02 Score=20.43 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=22.8
Q ss_pred eeHHHHHHHHHHhCCCCCCHHHHHHHHHhHc
Q 028513 158 ITAEELFGVFTKLGDELCTLDDCRGMIALVD 188 (208)
Q Consensus 158 I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D 188 (208)
-|..|++-++...+ ..+++++++.++.-.+
T Consensus 80 ~t~~ElRsIla~e~-~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKER-VMLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHcc-CCCCHHHHHHHHHHHH
Confidence 35678888888888 8888888888876554
No 278
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=22.52 E-value=2e+02 Score=21.74 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHH
Q 028513 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSM 122 (208)
Q Consensus 78 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 122 (208)
..+.++++|..||++.--.++.+++..++..-+.- -....++.+
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~II-Rnr~KI~Av 95 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGII-RHRGKIQAI 95 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhH-HhHHHHHHH
Confidence 56789999999999877788999999998766654 334444443
No 279
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=22.51 E-value=51 Score=21.70 Aligned_cols=12 Identities=33% Similarity=0.321 Sum_probs=7.4
Q ss_pred CCCcccHHHHHH
Q 028513 130 GDGYIPLEALIS 141 (208)
Q Consensus 130 ~~g~i~~~eF~~ 141 (208)
-||.++-+|-..
T Consensus 15 aDG~v~~~E~~~ 26 (111)
T cd07176 15 ADGDIDDAELQA 26 (111)
T ss_pred hccCCCHHHHHH
Confidence 467777777433
No 280
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=22.44 E-value=2e+02 Score=22.75 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=14.5
Q ss_pred ceeHHHHHHH--HHHhCCCCCCHHHHHHHHHhHcCC
Q 028513 157 KITAEELFGV--FTKLGDELCTLDDCRGMIALVDKN 190 (208)
Q Consensus 157 ~I~~~e~~~~--l~~~g~~~~s~~~~~~l~~~~D~~ 190 (208)
.||.+|+... |...| .-+..++++..+..+...
T Consensus 24 vLS~~El~~~~~L~~~G-kiLeg~~Ld~aL~~~~~~ 58 (256)
T PF14932_consen 24 VLSEEELQAFEELQKSG-KILEGEALDEALKTISAF 58 (256)
T ss_pred cCCHHHHHHHHHHHHcC-CcCCHHHHHHHHHHcccc
Confidence 4444444443 33334 344444444444444333
No 281
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=22.23 E-value=1.9e+02 Score=18.70 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=22.0
Q ss_pred ceeHHHHHHHHHHhCCCCCCHHHHHHHHHhH
Q 028513 157 KITAEELFGVFTKLGDELCTLDDCRGMIALV 187 (208)
Q Consensus 157 ~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~ 187 (208)
.|+.+++..+..-.. ..++++++..+...+
T Consensus 2 ~i~~e~i~~la~La~-l~l~~ee~~~~~~~l 31 (95)
T PRK00034 2 AITREEVKHLAKLAR-LELSEEELEKFAGQL 31 (95)
T ss_pred CCCHHHHHHHHHHhC-CCCCHHHHHHHHHHH
Confidence 377888888877777 888888876664443
No 282
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=22.12 E-value=3.1e+02 Score=21.03 Aligned_cols=30 Identities=13% Similarity=-0.023 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhCCCCCCcc-cHHHHHHHH
Q 028513 77 DMNYELVQACKLLDRDNDGVV-LRSELEALL 106 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~~~~g~i-~~~e~~~~l 106 (208)
+....+.++|..+=.+.+..+ +.+-+..++
T Consensus 81 ~~~~~~~~YyKkhIy~~d~~v~d~~~lv~~c 111 (205)
T PF12238_consen 81 EGREKMTKYYKKHIYKEDSEVKDYNGLVKFC 111 (205)
T ss_pred ccHHHHHHHHHHhccCcccccccHHHHHHHH
Confidence 333444444444333333333 444444433
No 283
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=22.05 E-value=3.1e+02 Score=19.79 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh
Q 028513 77 DMNYELVQACKLLDRDNDGVVLRSELEALLIRL 109 (208)
Q Consensus 77 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~ 109 (208)
..+..+......+|.++.++|+..|++.++-.+
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 367778888888999888889999999987544
No 284
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=21.81 E-value=2.1e+02 Score=17.61 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----CCCCCCHHHHHHHHHhh
Q 028513 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRL----GADPPTQEEVKSMLSEV 126 (208)
Q Consensus 78 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~~ 126 (208)
....+..+...++.+..--+-..+++.++..+ |.. ..++.++.+|..|
T Consensus 21 a~~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~-~~ediLd~IFs~F 72 (73)
T PF12631_consen 21 ALEHLEDALEALENGLPLDLVAEDLREALESLGEITGEV-VTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS---HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHhh
Confidence 34455555555554444456666777776665 554 5666677776544
No 285
>KOG4776 consensus Uncharacterized conserved protein BCNT [Function unknown]
Probab=21.32 E-value=1.2e+02 Score=23.44 Aligned_cols=36 Identities=11% Similarity=0.284 Sum_probs=28.3
Q ss_pred cccHHHHHHH--HHHHHHHHCCCCCCceeHHHHHHHHH
Q 028513 133 YIPLEALISR--LKETFDFFDADHDGKITAEELFGVFT 168 (208)
Q Consensus 133 ~i~~~eF~~~--~~~~F~~~D~~~~G~I~~~e~~~~l~ 168 (208)
.++|.+|..- |..-...+....+|||...+|.+-..
T Consensus 178 q~DW~~y~ee~gi~dEL~ihNrgKdGYlerqeFL~R~d 215 (235)
T KOG4776|consen 178 QLDWGSYKEEKGIEDELDIHNRGKDGYLERQEFLERAD 215 (235)
T ss_pred hhcHHHHHHhcchHHHHHHhcccccchhHHHHHHHHhh
Confidence 3678887776 77888888888899999988877543
No 286
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.28 E-value=3.1e+02 Score=19.40 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=15.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhccCCCCcccHHH
Q 028513 102 LEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEA 138 (208)
Q Consensus 102 ~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 138 (208)
+...|+.-|+. ++..... ++..+-...++.++.+|
T Consensus 4 ~~~~l~~~glr-~T~qR~~-Il~~l~~~~~~h~sa~e 38 (148)
T PRK09462 4 NNTALKKAGLK-VTLPRLK-ILEVLQEPDNHHVSAED 38 (148)
T ss_pred HHHHHHHcCCC-CCHHHHH-HHHHHHhCCCCCCCHHH
Confidence 44556655665 4443322 22222222234555555
No 287
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=21.15 E-value=3.5e+02 Score=21.43 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=18.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 028513 72 ADISLDMNYELVQACKLLDRDNDGVVLRSELEALL 106 (208)
Q Consensus 72 ~~ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l 106 (208)
..||--+++++..+|..++.+ +|.++..++..-+
T Consensus 175 ~tLSySEleAv~~IL~~L~~~-egrlse~eLAerl 208 (251)
T TIGR02787 175 NTLSYSELEAVEHIFEELDGN-EGLLVASKIADRV 208 (251)
T ss_pred HhccHhHHHHHHHHHHHhccc-cccccHHHHHHHH
Confidence 344555555666666665442 3556655555544
No 288
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=21.08 E-value=2.7e+02 Score=18.74 Aligned_cols=40 Identities=5% Similarity=0.130 Sum_probs=32.5
Q ss_pred eeHHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHH
Q 028513 158 ITAEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRM 203 (208)
Q Consensus 158 I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~ 203 (208)
||.+++..+|...| ..+.+..+..+++.+. .++.++.+.-
T Consensus 17 ~ta~~I~~IL~aaG-veVe~~~~~~~~~aLa-----Gk~V~eli~~ 56 (105)
T cd04411 17 LTEDKIKELLSAAG-AEIEPERVKLFLSALN-----GKNIDEVISK 56 (105)
T ss_pred CCHHHHHHHHHHcC-CCcCHHHHHHHHHHHc-----CCCHHHHHHH
Confidence 99999999999999 9999999998888872 1356666643
No 289
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=1.1e+02 Score=22.74 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=24.3
Q ss_pred CCCCCCceeHHHHHHHHHHhCCCCCCHHHHHHHHHhHc
Q 028513 151 DADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVD 188 (208)
Q Consensus 151 D~~~~G~I~~~e~~~~l~~~g~~~~s~~~~~~l~~~~D 188 (208)
..++||++..+++...-.--+ ...+.+++..+++.-|
T Consensus 28 ~m~~dGfvpv~~lL~lnq~r~-~~~t~ddi~riVk~nd 64 (207)
T KOG2278|consen 28 NMRGDGFVPVEDLLNLNQFRG-ANHTIDDIRRIVKRND 64 (207)
T ss_pred cccCCCceEHHHHhccchhcc-cCCcHHHHHHHHhccc
Confidence 345777777777777655555 5666777777766543
No 290
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=20.97 E-value=2.3e+02 Score=17.84 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhHcCCCCCceeHHHHHHHHH
Q 028513 160 AEELFGVFTKLGDELCTLDDCRGMIALVDKNGDGFVCFEDFSRMME 205 (208)
Q Consensus 160 ~~e~~~~l~~~g~~~~s~~~~~~l~~~~D~~~dg~i~~~eF~~~l~ 205 (208)
..|++.++ ..+++++...++..+-. |.|-.+-++|...+.
T Consensus 3 ~~el~~~I-----~~l~~deqaeLvALmwi-GRGd~~~eew~~a~~ 42 (75)
T PF12616_consen 3 EEELRSFI-----EDLNEDEQAELVALMWI-GRGDFEAEEWEEAVA 42 (75)
T ss_pred HHHHHHHH-----HhCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHH
Confidence 34555555 34556666666666644 444555666665554
No 291
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=20.91 E-value=5.4e+02 Score=22.05 Aligned_cols=94 Identities=18% Similarity=0.128 Sum_probs=57.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCCHHHHHHHHHhhccCCCCc-----ccHHHHHHH-----HHHHH-HHH-----CCCCCCc
Q 028513 94 DGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGY-----IPLEALISR-----LKETF-DFF-----DADHDGK 157 (208)
Q Consensus 94 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~-----i~~~eF~~~-----~~~~F-~~~-----D~~~~G~ 157 (208)
.|+|+.+-+..+-..++.+...-.++-..+..|....-|. |+-..=|.+ +...+ +.+ .+..||.
T Consensus 50 ~GyIp~~ai~~VAe~Lgvp~~~V~eVATFYtmF~~~P~Gk~~~I~VC~~t~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~ 129 (400)
T PRK12373 50 EGWVTRAAIEKVADMLDMAYIRVLEVATFYTQFQLQPVGTRAHIQVCGTTPCMLRGSEALMAVCKSKIHAHPHELNADGT 129 (400)
T ss_pred cCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhcccccCCCCceEEEEcCChHHHhCChHHHHHHHHHHhCCCCCCcCCCCe
Confidence 5899999999988888876222334555666666555664 333333333 22222 233 3456888
Q ss_pred eeHHHHHHHHHHh--------C---CCCCCHHHHHHHHHhHc
Q 028513 158 ITAEELFGVFTKL--------G---DELCTLDDCRGMIALVD 188 (208)
Q Consensus 158 I~~~e~~~~l~~~--------g---~~~~s~~~~~~l~~~~D 188 (208)
+++++..++ ... + +..++.+.+..|+..+-
T Consensus 130 FTLe~veCL-GaC~~APv~~Ind~~y~~LTpe~v~~IL~~l~ 170 (400)
T PRK12373 130 LSWEEVECL-GACVNAPMVQIGKDYYEDLTPERLEEIIDAFA 170 (400)
T ss_pred EEEEeeeec-CccCCCCeEEECCEEeCCCCHHHHHHHHHHHh
Confidence 888776644 211 1 15788899999988884
No 292
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=20.90 E-value=3.2e+02 Score=19.75 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.8
Q ss_pred hhhhcCCHHHHHHHHHHHHHhCCCC
Q 028513 69 DMSADISLDMNYELVQACKLLDRDN 93 (208)
Q Consensus 69 ~~~~~ls~~~~~~l~~~F~~~D~~~ 93 (208)
.+-..||+++++.|......+|+++
T Consensus 19 elL~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 19 ELLAKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HHHHhCCHHHHHHHHHHHHhhCCCc
Confidence 3456789999999999888899875
No 293
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=20.86 E-value=1.8e+02 Score=17.22 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=13.7
Q ss_pred HHHHHHHHCCCCCCceeHHHHHHH
Q 028513 143 LKETFDFFDADHDGKITAEELFGV 166 (208)
Q Consensus 143 ~~~~F~~~D~~~~G~I~~~e~~~~ 166 (208)
...++.....++..+|+.+++..+
T Consensus 41 ~~~A~~~a~~~~rkti~~~Dv~~A 64 (65)
T PF00808_consen 41 AKEANEIAQRDKRKTITYEDVAKA 64 (65)
T ss_dssp HHHHHHHHHHTTSSEE-HHHHHHH
T ss_pred HHHHHHHHHHcCCCccCHHHHHHH
Confidence 455555555566666666666654
No 294
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=20.80 E-value=85 Score=23.62 Aligned_cols=44 Identities=16% Similarity=0.207 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCCHHHHHHH
Q 028513 78 MNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSM 122 (208)
Q Consensus 78 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 122 (208)
..+.++++|..||+..--..+.+++..+|...|+- -....+..+
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gII-R~r~KI~A~ 96 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGII-RNRGKIKAT 96 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchh-hhHHHHHHH
Confidence 56789999999999988899999999999887775 444444433
No 295
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=20.18 E-value=2e+02 Score=18.59 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=36.1
Q ss_pred CCcccHHHHHHHHHHHHHHHCCCCCCceeHHHHHHHHHHhCC--CCCCHHHHHHHHHhHcCCCCCceeH
Q 028513 131 DGYIPLEALISRLKETFDFFDADHDGKITAEELFGVFTKLGD--ELCTLDDCRGMIALVDKNGDGFVCF 197 (208)
Q Consensus 131 ~g~i~~~eF~~~~~~~F~~~D~~~~G~I~~~e~~~~l~~~g~--~~~s~~~~~~l~~~~D~~~dg~i~~ 197 (208)
+..++|+++++-++.+|..... +.++. .++-.-|. .--++.|+++.|+.+..|++..+..
T Consensus 17 d~~~s~e~L~~~v~~~c~~~~~---q~ft~----kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~i 78 (83)
T cd06404 17 DPSISLEELCNEVRDMCRFHND---QPFTL----KWIDEEGDPCTISSQMELEEAFRLYELNKDSELNI 78 (83)
T ss_pred CCCcCHHHHHHHHHHHhCCCCC---CcEEE----EEECCCCCceeecCHHHHHHHHHHHHhcCcccEEE
Confidence 3468899988888888877531 11111 11111120 1236788888888888888776654
Done!