Query 028514
Match_columns 208
No_of_seqs 172 out of 1997
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 12:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 99.8 5.2E-19 1.1E-23 143.5 11.6 81 35-118 4-92 (173)
2 PF06325 PrmA: Ribosomal prote 99.5 7.9E-14 1.7E-18 122.1 10.0 130 33-170 128-283 (295)
3 COG2264 PrmA Ribosomal protein 99.5 6.4E-13 1.4E-17 116.1 11.5 132 33-171 129-289 (300)
4 COG3897 Predicted methyltransf 99.4 1.7E-13 3.6E-18 112.6 2.6 74 45-120 54-128 (218)
5 KOG3201 Uncharacterized conser 99.3 1.3E-12 2.7E-17 104.7 4.9 124 45-172 4-167 (201)
6 COG4123 Predicted O-methyltran 99.3 5.5E-11 1.2E-15 101.6 11.9 122 37-170 18-194 (248)
7 PRK00517 prmA ribosomal protei 99.2 2.6E-10 5.6E-15 97.4 11.5 131 33-170 86-238 (250)
8 TIGR00406 prmA ribosomal prote 99.1 4.7E-10 1E-14 97.8 11.3 82 33-120 126-208 (288)
9 KOG2793 Putative N2,N2-dimethy 99.1 6.4E-10 1.4E-14 95.1 11.3 128 37-168 42-223 (248)
10 COG2263 Predicted RNA methylas 99.1 1.3E-09 2.7E-14 89.5 10.0 53 65-119 40-93 (198)
11 PF05175 MTS: Methyltransferas 99.1 3E-10 6.6E-15 91.5 6.2 63 52-120 17-81 (170)
12 TIGR00537 hemK_rel_arch HemK-r 99.0 7.2E-09 1.6E-13 83.8 12.3 60 55-120 8-67 (179)
13 KOG1499 Protein arginine N-met 99.0 1E-09 2.2E-14 97.3 7.2 56 62-120 52-108 (346)
14 COG2227 UbiG 2-polyprenyl-3-me 98.9 5.5E-09 1.2E-13 88.6 8.0 50 69-120 58-107 (243)
15 COG2813 RsmC 16S RNA G1207 met 98.8 1.2E-08 2.5E-13 89.3 8.6 48 71-120 159-208 (300)
16 PRK03522 rumB 23S rRNA methylu 98.8 2.7E-08 5.9E-13 87.7 10.1 49 70-120 173-221 (315)
17 PRK00107 gidB 16S rRNA methylt 98.8 3E-07 6.5E-12 75.6 15.4 111 71-193 46-185 (187)
18 PRK13168 rumA 23S rRNA m(5)U19 98.8 4.3E-08 9.3E-13 90.3 11.4 64 55-120 282-345 (443)
19 PRK14968 putative methyltransf 98.8 8E-08 1.7E-12 77.2 11.6 64 50-119 7-70 (188)
20 TIGR00138 gidB 16S rRNA methyl 98.8 6.4E-08 1.4E-12 79.1 10.7 49 70-120 42-92 (181)
21 PF12847 Methyltransf_18: Meth 98.8 1.9E-08 4.2E-13 74.3 6.9 49 70-120 1-51 (112)
22 KOG1270 Methyltransferases [Co 98.8 9.1E-09 2E-13 88.2 5.5 46 70-117 89-134 (282)
23 TIGR02085 meth_trns_rumB 23S r 98.7 6.1E-08 1.3E-12 87.6 10.4 50 69-120 232-281 (374)
24 PRK14967 putative methyltransf 98.7 7.7E-08 1.7E-12 80.6 9.8 67 51-120 18-85 (223)
25 COG2890 HemK Methylase of poly 98.7 1.1E-08 2.4E-13 89.2 4.4 65 53-120 94-160 (280)
26 PRK11207 tellurite resistance 98.7 1.9E-07 4.1E-12 77.0 9.9 48 70-119 30-77 (197)
27 TIGR00477 tehB tellurite resis 98.7 2.1E-07 4.5E-12 76.6 10.1 49 70-120 30-78 (195)
28 PF03848 TehB: Tellurite resis 98.6 2.1E-08 4.6E-13 82.9 3.7 51 68-120 28-78 (192)
29 KOG2920 Predicted methyltransf 98.6 2.8E-08 6.1E-13 86.0 4.5 61 45-107 88-152 (282)
30 PLN02396 hexaprenyldihydroxybe 98.6 2.4E-07 5.2E-12 82.3 10.3 47 69-117 130-176 (322)
31 PRK08287 cobalt-precorrin-6Y C 98.6 7.1E-07 1.5E-11 72.6 12.1 48 70-119 31-80 (187)
32 TIGR00479 rumA 23S rRNA (uraci 98.6 4.3E-07 9.3E-12 83.2 11.2 64 55-120 277-340 (431)
33 PRK11783 rlmL 23S rRNA m(2)G24 98.6 1.2E-06 2.6E-11 85.1 13.7 49 70-120 538-587 (702)
34 PRK12335 tellurite resistance 98.5 5.2E-07 1.1E-11 78.5 9.1 49 70-120 120-168 (287)
35 PRK11036 putative S-adenosyl-L 98.5 5.4E-07 1.2E-11 76.9 8.8 47 70-118 44-90 (255)
36 TIGR00095 RNA methyltransferas 98.5 4.6E-07 1E-11 74.5 8.0 64 55-120 34-98 (189)
37 PRK15001 SAM-dependent 23S rib 98.5 4.3E-07 9.3E-12 82.3 7.5 61 53-119 215-277 (378)
38 TIGR02143 trmA_only tRNA (urac 98.5 1E-06 2.2E-11 79.1 9.6 48 71-120 198-245 (353)
39 PRK00377 cbiT cobalt-precorrin 98.4 3.8E-06 8.2E-11 69.1 12.2 50 68-119 38-90 (198)
40 COG2242 CobL Precorrin-6B meth 98.4 3.9E-06 8.4E-11 68.9 11.7 49 70-120 34-84 (187)
41 PRK04148 hypothetical protein; 98.4 7.7E-07 1.7E-11 69.6 7.1 102 57-166 3-106 (134)
42 TIGR03534 RF_mod_PrmC protein- 98.4 2.5E-06 5.4E-11 71.7 10.5 67 51-120 69-137 (251)
43 PRK07402 precorrin-6B methylas 98.4 4.6E-06 9.9E-11 68.4 11.6 49 70-120 40-90 (196)
44 PF13847 Methyltransf_31: Meth 98.4 8.4E-07 1.8E-11 69.6 6.8 49 70-120 3-54 (152)
45 PRK14966 unknown domain/N5-glu 98.4 5.1E-06 1.1E-10 76.1 12.7 63 53-119 236-300 (423)
46 KOG3420 Predicted RNA methylas 98.4 3.7E-07 8.1E-12 72.3 4.6 60 59-120 37-97 (185)
47 PRK15128 23S rRNA m(5)C1962 me 98.4 5.2E-06 1.1E-10 75.7 12.7 48 70-119 220-268 (396)
48 TIGR00080 pimt protein-L-isoas 98.4 7.2E-07 1.6E-11 74.3 6.6 50 69-120 76-128 (215)
49 PRK05031 tRNA (uracil-5-)-meth 98.4 1.9E-06 4.2E-11 77.5 9.7 64 54-120 191-254 (362)
50 PRK10258 biotin biosynthesis p 98.4 7.4E-07 1.6E-11 75.6 6.2 44 70-115 42-85 (251)
51 COG2230 Cfa Cyclopropane fatty 98.4 6.5E-06 1.4E-10 71.8 12.1 58 61-120 63-121 (283)
52 TIGR00452 methyltransferase, p 98.4 5.8E-06 1.3E-10 73.3 12.0 58 51-111 103-161 (314)
53 PRK09489 rsmC 16S ribosomal RN 98.3 3.1E-06 6.7E-11 75.8 9.9 61 54-120 184-246 (342)
54 KOG1500 Protein arginine N-met 98.3 6.9E-07 1.5E-11 79.4 5.3 53 65-120 172-225 (517)
55 PRK15451 tRNA cmo(5)U34 methyl 98.3 7E-06 1.5E-10 69.9 10.9 48 70-119 56-107 (247)
56 PLN02244 tocopherol O-methyltr 98.3 7.2E-06 1.6E-10 73.2 11.4 48 70-119 118-166 (340)
57 PRK01544 bifunctional N5-gluta 98.3 7.2E-06 1.6E-10 77.0 11.7 47 71-119 139-187 (506)
58 TIGR02469 CbiT precorrin-6Y C5 98.3 4.2E-06 9.1E-11 62.3 8.3 49 70-120 19-69 (124)
59 TIGR02021 BchM-ChlM magnesium 98.3 3.6E-06 7.8E-11 70.0 8.3 50 68-119 53-102 (219)
60 PRK09328 N5-glutamine S-adenos 98.3 4.1E-06 8.9E-11 71.6 8.8 62 52-115 90-153 (275)
61 PF02353 CMAS: Mycolic acid cy 98.3 4.6E-06 9.9E-11 72.5 9.1 63 56-120 48-111 (273)
62 PRK05134 bifunctional 3-demeth 98.3 2.3E-05 5E-10 65.5 12.9 58 59-118 37-94 (233)
63 PRK13255 thiopurine S-methyltr 98.3 1.1E-05 2.4E-10 67.9 10.7 54 55-111 23-76 (218)
64 TIGR01177 conserved hypothetic 98.2 8.7E-06 1.9E-10 72.2 10.5 61 58-120 170-230 (329)
65 PF13659 Methyltransf_26: Meth 98.2 2E-06 4.3E-11 64.0 5.4 48 71-120 1-49 (117)
66 TIGR00478 tly hemolysin TlyA f 98.2 2.8E-06 6.1E-11 72.1 6.8 62 50-113 55-118 (228)
67 PLN02585 magnesium protoporphy 98.2 4.7E-06 1E-10 73.9 7.9 46 69-116 143-188 (315)
68 PRK13942 protein-L-isoaspartat 98.2 3.4E-06 7.4E-11 70.3 6.7 62 57-120 63-127 (212)
69 PRK10909 rsmD 16S rRNA m(2)G96 98.2 3.4E-06 7.4E-11 70.1 6.5 49 70-120 53-102 (199)
70 PRK13944 protein-L-isoaspartat 98.2 3.2E-06 6.9E-11 70.1 6.2 48 70-119 72-122 (205)
71 TIGR02752 MenG_heptapren 2-hep 98.2 2.5E-05 5.4E-10 65.2 11.5 48 70-119 45-95 (231)
72 TIGR03533 L3_gln_methyl protei 98.2 6.3E-06 1.4E-10 71.9 8.1 48 71-120 122-171 (284)
73 smart00650 rADc Ribosomal RNA 98.2 4.4E-06 9.6E-11 66.9 6.6 45 70-116 13-57 (169)
74 PF05958 tRNA_U5-meth_tr: tRNA 98.2 9.5E-06 2.1E-10 72.9 9.4 67 51-120 178-244 (352)
75 TIGR03704 PrmC_rel_meth putati 98.2 6E-06 1.3E-10 70.8 7.6 64 54-119 69-135 (251)
76 COG2265 TrmA SAM-dependent met 98.2 1.2E-05 2.6E-10 74.2 10.0 64 55-120 278-341 (432)
77 PRK00274 ksgA 16S ribosomal RN 98.2 4.9E-06 1.1E-10 72.0 6.9 56 59-116 31-86 (272)
78 PLN02672 methionine S-methyltr 98.1 5.3E-06 1.2E-10 83.6 7.6 64 53-118 100-166 (1082)
79 COG2226 UbiE Methylase involve 98.1 1.8E-05 3.8E-10 67.6 9.6 59 50-116 37-97 (238)
80 PRK00312 pcm protein-L-isoaspa 98.1 9.5E-06 2.1E-10 67.2 7.9 61 58-120 66-126 (212)
81 COG2518 Pcm Protein-L-isoaspar 98.1 2.4E-06 5.3E-11 71.3 4.3 105 18-128 24-145 (209)
82 PF01209 Ubie_methyltran: ubiE 98.1 1.3E-05 2.8E-10 68.2 8.6 62 50-119 33-97 (233)
83 PF08241 Methyltransf_11: Meth 98.1 3.7E-06 8.1E-11 59.4 4.1 43 75-119 1-44 (95)
84 TIGR00091 tRNA (guanine-N(7)-) 98.1 2.8E-05 6.1E-10 63.8 9.9 49 70-120 16-66 (194)
85 PRK00216 ubiE ubiquinone/menaq 98.1 8.6E-05 1.9E-09 61.5 12.7 46 70-117 51-99 (239)
86 PRK07580 Mg-protoporphyrin IX 98.1 8.4E-06 1.8E-10 67.7 6.6 48 70-119 63-110 (230)
87 PRK14896 ksgA 16S ribosomal RN 98.1 1.2E-05 2.6E-10 69.0 7.2 57 58-116 17-73 (258)
88 TIGR00536 hemK_fam HemK family 98.1 1.2E-05 2.7E-10 69.8 7.4 46 72-119 116-163 (284)
89 PRK00121 trmB tRNA (guanine-N( 98.1 1.1E-05 2.3E-10 66.8 6.6 49 70-120 40-90 (202)
90 PRK11727 23S rRNA mA1618 methy 98.1 8.7E-06 1.9E-10 72.4 6.4 48 71-120 115-165 (321)
91 PTZ00098 phosphoethanolamine N 98.0 1.8E-05 3.9E-10 68.2 8.1 44 70-115 52-96 (263)
92 PRK01683 trans-aconitate 2-met 98.0 1.7E-05 3.6E-10 67.5 7.6 43 70-114 31-75 (258)
93 PRK11805 N5-glutamine S-adenos 98.0 1.7E-05 3.7E-10 70.0 7.8 47 72-120 135-183 (307)
94 smart00828 PKS_MT Methyltransf 98.0 8.8E-05 1.9E-09 61.5 11.7 46 72-119 1-48 (224)
95 PRK11705 cyclopropane fatty ac 98.0 3.2E-05 7E-10 70.2 9.3 45 69-115 166-211 (383)
96 PRK06202 hypothetical protein; 98.0 7.3E-06 1.6E-10 68.8 4.8 48 70-119 60-113 (232)
97 TIGR03587 Pse_Me-ase pseudamin 98.0 1.8E-05 4E-10 65.8 7.0 43 70-114 43-87 (204)
98 KOG1271 Methyltransferases [Ge 98.0 3.1E-05 6.7E-10 63.7 7.9 66 53-120 46-117 (227)
99 COG4976 Predicted methyltransf 98.0 1.8E-05 4E-10 67.1 6.8 58 72-131 127-198 (287)
100 COG1092 Predicted SAM-dependen 98.0 5.4E-05 1.2E-09 69.0 10.0 98 69-168 216-364 (393)
101 PRK04266 fibrillarin; Provisio 98.0 2.7E-05 5.9E-10 65.9 7.6 65 47-115 45-117 (226)
102 PLN02490 MPBQ/MSBQ methyltrans 98.0 0.0003 6.5E-09 63.1 14.4 47 70-118 113-161 (340)
103 PRK15068 tRNA mo(5)U34 methylt 98.0 7.1E-05 1.5E-09 66.5 10.3 57 51-110 104-161 (322)
104 TIGR03840 TMPT_Se_Te thiopurin 97.9 2.7E-05 5.8E-10 65.3 6.8 55 54-111 19-73 (213)
105 TIGR01983 UbiG ubiquinone bios 97.9 4.1E-05 8.8E-10 63.4 7.8 66 52-119 23-92 (224)
106 PTZ00338 dimethyladenosine tra 97.9 2.9E-05 6.3E-10 68.2 7.1 57 60-118 26-82 (294)
107 PHA03412 putative methyltransf 97.9 6.1E-06 1.3E-10 70.4 2.6 63 47-115 30-97 (241)
108 TIGR00740 methyltransferase, p 97.9 2.9E-05 6.3E-10 65.4 6.5 46 70-117 53-102 (239)
109 PLN02781 Probable caffeoyl-CoA 97.9 3.1E-05 6.8E-10 65.7 6.7 49 70-120 68-119 (234)
110 PRK11873 arsM arsenite S-adeno 97.9 0.00012 2.6E-09 62.8 10.3 48 70-119 77-127 (272)
111 PLN02336 phosphoethanolamine N 97.9 8.1E-05 1.8E-09 68.9 9.9 45 70-116 266-311 (475)
112 TIGR00755 ksgA dimethyladenosi 97.9 4.4E-05 9.5E-10 65.2 7.3 45 69-115 28-72 (253)
113 PRK05785 hypothetical protein; 97.9 2.1E-05 4.6E-10 66.3 5.2 41 71-113 52-93 (226)
114 PF13649 Methyltransf_25: Meth 97.9 2.4E-05 5.1E-10 57.2 4.8 45 74-120 1-50 (101)
115 PRK08317 hypothetical protein; 97.9 0.0002 4.3E-09 59.0 10.9 55 57-113 6-63 (241)
116 PRK14103 trans-aconitate 2-met 97.9 3.8E-05 8.2E-10 65.4 6.7 42 70-113 29-72 (255)
117 TIGR00446 nop2p NOL1/NOP2/sun 97.9 0.00017 3.6E-09 62.2 10.8 64 51-120 56-122 (264)
118 PF13489 Methyltransf_23: Meth 97.9 4.6E-05 9.9E-10 59.1 6.6 39 69-109 21-59 (161)
119 PRK13943 protein-L-isoaspartat 97.9 5.4E-05 1.2E-09 67.3 7.8 63 55-120 66-131 (322)
120 PRK11188 rrmJ 23S rRNA methylt 97.8 0.00041 8.9E-09 57.8 12.5 33 70-102 51-86 (209)
121 KOG3191 Predicted N6-DNA-methy 97.8 0.00017 3.8E-09 59.2 9.8 66 53-120 23-94 (209)
122 PLN02233 ubiquinone biosynthes 97.8 0.00014 2.9E-09 62.6 9.6 43 70-114 73-118 (261)
123 KOG2187 tRNA uracil-5-methyltr 97.8 6.5E-05 1.4E-09 69.9 6.7 66 53-120 366-431 (534)
124 PRK04338 N(2),N(2)-dimethylgua 97.7 9.6E-05 2.1E-09 67.2 7.7 48 71-120 58-107 (382)
125 PRK10901 16S rRNA methyltransf 97.7 8.6E-05 1.9E-09 68.2 7.5 64 50-119 227-293 (427)
126 PTZ00146 fibrillarin; Provisio 97.7 0.00067 1.4E-08 59.6 12.4 59 48-108 106-171 (293)
127 PF08003 Methyltransf_9: Prote 97.7 4.9E-05 1.1E-09 66.9 5.0 50 52-102 98-148 (315)
128 PF02475 Met_10: Met-10+ like- 97.7 8.5E-05 1.8E-09 61.9 6.1 49 70-120 101-151 (200)
129 TIGR03438 probable methyltrans 97.7 7.2E-05 1.6E-09 65.6 5.8 45 70-116 63-110 (301)
130 PHA03411 putative methyltransf 97.7 0.00012 2.6E-09 63.8 6.5 62 47-114 45-108 (279)
131 PRK14902 16S rRNA methyltransf 97.6 0.00014 3.1E-09 67.0 7.4 62 53-120 237-301 (444)
132 COG2519 GCD14 tRNA(1-methylade 97.6 0.00045 9.8E-09 59.3 9.8 95 66-164 90-214 (256)
133 PF01135 PCMT: Protein-L-isoas 97.6 7.2E-05 1.6E-09 62.6 4.7 50 69-120 71-123 (209)
134 PRK04457 spermidine synthase; 97.6 0.0012 2.6E-08 56.9 12.4 47 70-118 66-114 (262)
135 KOG2904 Predicted methyltransf 97.6 0.00022 4.7E-09 62.1 7.3 53 66-120 144-198 (328)
136 TIGR02072 BioC biotin biosynth 97.6 0.00019 4.1E-09 59.3 6.9 45 69-115 33-79 (240)
137 TIGR01444 fkbM_fam methyltrans 97.6 0.00015 3.3E-09 55.7 5.6 46 73-120 1-48 (143)
138 TIGR02716 C20_methyl_CrtF C-20 97.6 0.00021 4.6E-09 62.5 6.9 48 70-120 149-198 (306)
139 PF03602 Cons_hypoth95: Conser 97.6 0.00011 2.5E-09 60.1 4.8 50 69-120 41-91 (183)
140 PRK06922 hypothetical protein; 97.5 0.00024 5.2E-09 68.4 7.4 47 69-117 417-465 (677)
141 PRK14904 16S rRNA methyltransf 97.5 0.00036 7.9E-09 64.4 8.4 67 49-120 232-301 (445)
142 TIGR00563 rsmB ribosomal RNA s 97.5 0.00031 6.8E-09 64.5 7.7 61 53-119 225-287 (426)
143 PF10672 Methyltrans_SAM: S-ad 97.5 0.00062 1.4E-08 59.7 8.8 49 70-120 123-172 (286)
144 KOG3010 Methyltransferase [Gen 97.5 0.00025 5.4E-09 60.6 5.9 39 73-113 36-74 (261)
145 PLN02476 O-methyltransferase 97.5 0.00038 8.2E-09 60.8 7.3 49 70-120 118-169 (278)
146 PRK14121 tRNA (guanine-N(7)-)- 97.5 0.00036 7.8E-09 63.6 7.2 48 71-120 123-172 (390)
147 TIGR00308 TRM1 tRNA(guanine-26 97.5 0.00044 9.6E-09 62.7 7.8 47 72-120 46-95 (374)
148 PRK14901 16S rRNA methyltransf 97.4 0.00042 9.1E-09 63.8 7.3 61 54-120 240-303 (434)
149 PF08704 GCD14: tRNA methyltra 97.4 0.0015 3.2E-08 56.1 9.8 53 66-120 36-91 (247)
150 PRK14903 16S rRNA methyltransf 97.4 0.00053 1.2E-08 63.2 7.6 49 70-120 237-288 (431)
151 PF01596 Methyltransf_3: O-met 97.4 0.00044 9.5E-09 57.8 6.3 49 70-120 45-96 (205)
152 KOG1541 Predicted protein carb 97.4 0.00014 2.9E-09 61.6 3.2 41 70-112 50-90 (270)
153 PF08242 Methyltransf_12: Meth 97.4 1.7E-05 3.7E-10 57.5 -2.0 43 75-119 1-45 (99)
154 PLN02336 phosphoethanolamine N 97.4 0.00043 9.3E-09 64.1 6.8 41 70-112 37-77 (475)
155 PF05185 PRMT5: PRMT5 arginine 97.3 0.00073 1.6E-08 62.7 7.9 49 70-120 186-240 (448)
156 COG0742 N6-adenine-specific me 97.3 0.00042 9.1E-09 57.1 5.4 51 68-120 41-92 (187)
157 TIGR01934 MenG_MenH_UbiE ubiqu 97.3 0.00093 2E-08 54.7 7.5 44 70-115 39-85 (223)
158 PRK11088 rrmA 23S rRNA methylt 97.3 0.0008 1.7E-08 58.0 7.2 43 70-114 85-132 (272)
159 TIGR00438 rrmJ cell division p 97.3 0.00062 1.3E-08 55.3 6.1 47 56-102 18-67 (188)
160 COG4076 Predicted RNA methylas 97.3 0.00054 1.2E-08 56.8 5.5 47 72-120 34-80 (252)
161 COG4106 Tam Trans-aconitate me 97.3 0.00037 8E-09 58.8 4.4 59 71-131 31-102 (257)
162 PF13679 Methyltransf_32: Meth 97.2 0.0013 2.8E-08 51.3 7.0 47 70-118 25-77 (141)
163 COG0357 GidB Predicted S-adeno 97.2 0.0027 5.9E-08 53.4 9.2 97 71-169 68-194 (215)
164 PRK13256 thiopurine S-methyltr 97.2 0.0011 2.3E-08 56.3 6.8 64 46-112 20-83 (226)
165 TIGR02081 metW methionine bios 97.1 0.00078 1.7E-08 55.0 5.1 41 70-112 13-54 (194)
166 PHA01634 hypothetical protein 97.1 0.0011 2.3E-08 51.7 5.3 50 68-119 26-76 (156)
167 PF07021 MetW: Methionine bios 97.1 0.00048 1E-08 57.0 3.2 42 70-112 13-55 (193)
168 COG2520 Predicted methyltransf 97.0 0.0052 1.1E-07 55.1 9.9 49 70-120 188-237 (341)
169 cd02440 AdoMet_MTases S-adenos 97.0 0.0017 3.8E-08 44.9 5.5 43 73-117 1-44 (107)
170 KOG1540 Ubiquinone biosynthesi 97.0 0.0059 1.3E-07 52.8 9.6 98 67-168 97-237 (296)
171 PLN03075 nicotianamine synthas 97.0 0.0013 2.8E-08 58.0 5.6 45 70-116 123-171 (296)
172 COG0030 KsgA Dimethyladenosine 97.0 0.0026 5.6E-08 55.0 7.1 61 51-115 13-73 (259)
173 smart00138 MeTrc Methyltransfe 97.0 0.0013 2.8E-08 56.8 5.2 43 70-114 99-152 (264)
174 PF05971 Methyltransf_10: Prot 96.9 0.0021 4.6E-08 56.7 6.2 47 72-120 104-153 (299)
175 PF09445 Methyltransf_15: RNA 96.9 0.0025 5.4E-08 51.5 6.0 47 72-120 1-47 (163)
176 COG4122 Predicted O-methyltran 96.9 0.0036 7.9E-08 52.9 7.0 49 70-120 59-110 (219)
177 KOG0820 Ribosomal RNA adenine 96.8 0.0026 5.7E-08 55.4 5.8 83 45-130 34-132 (315)
178 PF05724 TPMT: Thiopurine S-me 96.8 0.0027 5.8E-08 53.5 5.5 54 54-110 22-75 (218)
179 PF05401 NodS: Nodulation prot 96.7 0.0016 3.5E-08 54.1 3.7 43 72-116 45-87 (201)
180 PRK00811 spermidine synthase; 96.7 0.0033 7.2E-08 54.8 5.9 44 70-115 76-121 (283)
181 COG3963 Phospholipid N-methylt 96.7 0.012 2.7E-07 47.9 8.6 61 51-113 29-92 (194)
182 KOG4300 Predicted methyltransf 96.7 0.00081 1.7E-08 56.5 1.8 46 73-120 79-125 (252)
183 PLN02589 caffeoyl-CoA O-methyl 96.7 0.0047 1E-07 53.1 6.5 49 70-120 79-130 (247)
184 PF00398 RrnaAD: Ribosomal RNA 96.7 0.0042 9.2E-08 53.4 6.1 57 57-115 17-73 (262)
185 KOG1501 Arginine N-methyltrans 96.7 0.0027 5.9E-08 58.6 5.0 46 73-120 69-115 (636)
186 COG1041 Predicted DNA modifica 96.6 0.014 3E-07 52.4 8.8 61 58-120 185-245 (347)
187 COG1189 Predicted rRNA methyla 96.4 0.011 2.4E-07 50.5 6.9 62 49-111 58-120 (245)
188 PF02527 GidB: rRNA small subu 96.4 0.017 3.7E-07 47.5 7.5 45 73-119 51-97 (184)
189 KOG2899 Predicted methyltransf 96.3 0.0049 1.1E-07 52.9 4.4 47 67-115 55-103 (288)
190 TIGR00417 speE spermidine synt 96.1 0.013 2.8E-07 50.6 6.0 44 70-115 72-117 (270)
191 PRK11760 putative 23S rRNA C24 96.1 0.012 2.6E-07 52.9 5.7 39 69-110 210-248 (357)
192 KOG2497 Predicted methyltransf 96.0 0.0067 1.5E-07 52.5 3.7 55 45-99 65-119 (262)
193 PF06080 DUF938: Protein of un 95.9 0.022 4.7E-07 47.7 6.3 45 73-119 28-74 (204)
194 PRK03612 spermidine synthase; 95.9 0.014 3E-07 55.2 5.3 43 70-114 297-341 (521)
195 PF03291 Pox_MCEL: mRNA cappin 95.7 0.025 5.4E-07 50.6 6.2 62 51-114 43-105 (331)
196 PF01861 DUF43: Protein of unk 95.7 0.086 1.9E-06 45.2 9.0 124 45-172 20-180 (243)
197 KOG2361 Predicted methyltransf 95.7 0.018 3.9E-07 49.4 4.8 43 73-117 74-120 (264)
198 PRK01581 speE spermidine synth 95.6 0.02 4.3E-07 52.0 5.0 41 70-112 150-192 (374)
199 PF02390 Methyltransf_4: Putat 95.6 0.029 6.3E-07 46.3 5.6 47 72-120 19-67 (195)
200 PF04816 DUF633: Family of unk 95.6 0.036 7.9E-07 46.3 6.2 45 74-120 1-47 (205)
201 PRK00050 16S rRNA m(4)C1402 me 95.5 0.038 8.3E-07 48.7 6.3 45 70-116 19-66 (296)
202 PF01728 FtsJ: FtsJ-like methy 95.4 0.044 9.5E-07 44.0 6.0 50 53-102 4-58 (181)
203 PLN02366 spermidine synthase 95.4 0.036 7.8E-07 49.1 5.8 44 70-115 91-136 (308)
204 KOG2078 tRNA modification enzy 95.3 0.017 3.7E-07 53.2 3.7 96 21-120 198-297 (495)
205 PRK10742 putative methyltransf 95.2 0.049 1.1E-06 46.9 6.0 42 73-116 91-132 (250)
206 PF01170 UPF0020: Putative RNA 95.1 0.027 5.9E-07 45.7 3.9 49 70-120 28-87 (179)
207 PF02384 N6_Mtase: N-6 DNA Met 95.1 0.057 1.2E-06 47.1 6.2 69 46-118 24-101 (311)
208 PRK11933 yebU rRNA (cytosine-C 95.0 0.28 6.1E-06 46.0 10.9 65 52-120 97-164 (470)
209 COG0220 Predicted S-adenosylme 94.9 0.19 4E-06 42.7 8.7 46 72-119 50-97 (227)
210 PF05219 DREV: DREV methyltran 94.8 0.045 9.8E-07 47.4 4.7 41 70-112 94-134 (265)
211 PF07757 AdoMet_MTase: Predict 94.6 0.047 1E-06 41.2 3.7 31 72-102 60-90 (112)
212 PF00891 Methyltransf_2: O-met 94.4 0.13 2.7E-06 43.2 6.5 40 70-112 100-141 (241)
213 TIGR02987 met_A_Alw26 type II 94.4 0.065 1.4E-06 50.5 5.1 47 70-118 31-87 (524)
214 KOG1661 Protein-L-isoaspartate 94.2 0.067 1.4E-06 45.1 4.2 46 69-116 81-130 (237)
215 PRK11783 rlmL 23S rRNA m(2)G24 94.2 0.13 2.8E-06 50.4 6.8 49 70-120 190-282 (702)
216 COG2521 Predicted archaeal met 94.1 0.13 2.9E-06 44.2 5.8 63 45-113 113-176 (287)
217 PF02005 TRM: N2,N2-dimethylgu 93.7 0.14 3E-06 46.7 5.6 48 71-120 50-100 (377)
218 PF09243 Rsm22: Mitochondrial 93.7 0.23 5E-06 43.1 6.8 47 67-115 30-79 (274)
219 KOG2915 tRNA(1-methyladenosine 93.6 1.1 2.4E-05 39.4 10.6 102 67-171 102-236 (314)
220 KOG0024 Sorbitol dehydrogenase 93.4 0.34 7.4E-06 43.4 7.3 75 34-112 135-212 (354)
221 PLN02823 spermine synthase 92.9 0.2 4.4E-06 44.9 5.4 46 70-117 103-150 (336)
222 PF08123 DOT1: Histone methyla 92.5 0.25 5.4E-06 41.2 5.1 62 45-112 21-84 (205)
223 COG2384 Predicted SAM-dependen 92.1 0.27 5.8E-06 41.6 4.8 48 71-120 17-66 (226)
224 PF03141 Methyltransf_29: Puta 91.5 0.49 1.1E-05 44.5 6.2 56 45-100 88-147 (506)
225 COG0293 FtsJ 23S rRNA methylas 91.3 0.5 1.1E-05 39.6 5.5 49 53-102 28-80 (205)
226 PF03686 UPF0146: Uncharacteri 91.3 0.55 1.2E-05 36.4 5.3 96 56-166 2-99 (127)
227 KOG2730 Methylase [General fun 90.9 0.36 7.7E-06 41.2 4.3 49 70-120 94-142 (263)
228 COG0116 Predicted N6-adenine-s 90.4 0.82 1.8E-05 41.7 6.5 49 70-120 191-280 (381)
229 PRK01544 bifunctional N5-gluta 89.6 0.84 1.8E-05 43.1 6.1 48 71-120 348-397 (506)
230 KOG1227 Putative methyltransfe 89.1 0.27 5.9E-06 43.6 2.2 69 50-120 168-244 (351)
231 COG0500 SmtA SAM-dependent met 89.0 0.9 2E-05 32.2 4.7 38 74-114 52-92 (257)
232 PF05148 Methyltransf_8: Hypot 88.8 0.31 6.7E-06 41.1 2.3 35 51-88 54-90 (219)
233 KOG1975 mRNA cap methyltransfe 88.7 0.69 1.5E-05 41.5 4.6 54 52-113 105-159 (389)
234 PF11968 DUF3321: Putative met 88.6 0.2 4.3E-06 42.3 1.0 115 52-168 29-179 (219)
235 TIGR03439 methyl_EasF probable 88.4 0.96 2.1E-05 40.3 5.3 44 70-115 76-125 (319)
236 cd00315 Cyt_C5_DNA_methylase C 87.7 1.1 2.4E-05 38.7 5.2 41 73-115 2-43 (275)
237 COG0144 Sun tRNA and rRNA cyto 87.7 7.4 0.00016 35.1 10.6 62 53-120 143-208 (355)
238 KOG1663 O-methyltransferase [S 87.4 2.2 4.8E-05 36.4 6.6 50 69-120 72-124 (237)
239 PF01234 NNMT_PNMT_TEMT: NNMT/ 87.0 0.68 1.5E-05 40.1 3.4 48 67-116 53-101 (256)
240 KOG2940 Predicted methyltransf 86.3 1.2 2.6E-05 38.4 4.4 57 72-131 74-147 (325)
241 PF01555 N6_N4_Mtase: DNA meth 85.9 2.8 6E-05 33.8 6.4 60 50-112 172-231 (231)
242 KOG3987 Uncharacterized conser 85.3 0.23 5E-06 42.1 -0.3 39 72-112 114-152 (288)
243 COG1867 TRM1 N2,N2-dimethylgua 84.6 2.7 5.8E-05 38.3 6.1 46 71-118 53-100 (380)
244 PF07942 N2227: N2227-like pro 83.9 4 8.7E-05 35.6 6.7 32 71-102 57-88 (270)
245 KOG2651 rRNA adenine N-6-methy 82.7 3.6 7.9E-05 37.8 6.1 31 72-102 155-186 (476)
246 PRK09424 pntA NAD(P) transhydr 82.6 2.2 4.8E-05 40.5 5.0 42 69-112 163-206 (509)
247 PF05206 TRM13: Methyltransfer 82.3 3 6.5E-05 36.1 5.3 33 70-102 18-57 (259)
248 COG1889 NOP1 Fibrillarin-like 82.2 30 0.00065 29.3 11.1 56 48-103 50-111 (231)
249 PF01189 Nol1_Nop2_Fmu: NOL1/N 81.7 10 0.00023 32.9 8.6 69 47-120 65-136 (283)
250 PF11599 AviRa: RRNA methyltra 80.6 5.4 0.00012 34.0 6.1 43 73-117 54-100 (246)
251 COG1255 Uncharacterized protei 80.5 3.3 7.2E-05 31.8 4.3 94 58-166 4-99 (129)
252 COG3129 Predicted SAM-dependen 80.3 2.4 5.3E-05 36.5 3.9 63 56-120 62-129 (292)
253 PF01564 Spermine_synth: Sperm 80.3 3.7 8.1E-05 35.0 5.2 45 70-116 76-122 (246)
254 PF12147 Methyltransf_20: Puta 80.2 39 0.00085 30.1 11.5 48 71-120 136-187 (311)
255 PF07091 FmrO: Ribosomal RNA m 80.0 4.6 9.9E-05 34.9 5.6 48 71-120 106-155 (251)
256 KOG3045 Predicted RNA methylas 80.0 4.5 9.7E-05 35.5 5.5 35 134-168 254-289 (325)
257 KOG1201 Hydroxysteroid 17-beta 80.0 9.7 0.00021 33.7 7.7 71 67-137 34-113 (300)
258 COG1352 CheR Methylase of chem 79.7 2.9 6.2E-05 36.4 4.3 40 71-112 97-147 (268)
259 COG1063 Tdh Threonine dehydrog 79.5 4.8 0.00011 35.9 5.9 41 70-112 168-211 (350)
260 PRK13699 putative methylase; P 79.2 9.9 0.00021 32.0 7.4 44 70-115 163-206 (227)
261 cd01080 NAD_bind_m-THF_DH_Cycl 78.5 11 0.00023 30.4 7.0 49 51-102 27-78 (168)
262 PRK11524 putative methyltransf 76.9 11 0.00024 32.6 7.2 57 56-115 195-251 (284)
263 COG1064 AdhP Zn-dependent alco 76.8 4.8 0.0001 36.3 5.0 43 69-113 165-209 (339)
264 KOG4058 Uncharacterized conser 76.7 3.1 6.6E-05 33.6 3.3 46 73-120 75-121 (199)
265 COG1568 Predicted methyltransf 76.0 13 0.00028 33.0 7.2 51 67-120 149-201 (354)
266 PRK10611 chemotaxis methyltran 75.8 4.8 0.0001 35.4 4.6 40 72-113 117-166 (287)
267 PF02636 Methyltransf_28: Puta 75.6 8.1 0.00017 32.7 5.9 32 72-103 20-61 (252)
268 PF01739 CheR: CheR methyltran 73.5 5.1 0.00011 33.1 4.0 40 72-113 33-83 (196)
269 cd00401 AdoHcyase S-adenosyl-L 73.0 8.2 0.00018 35.7 5.6 36 67-102 198-235 (413)
270 COG0499 SAM1 S-adenosylhomocys 72.5 6.9 0.00015 35.8 4.8 52 45-102 189-242 (420)
271 TIGR00006 S-adenosyl-methyltra 72.2 16 0.00034 32.5 7.0 45 70-116 20-66 (305)
272 COG1565 Uncharacterized conser 71.9 14 0.0003 33.7 6.6 57 55-114 59-128 (370)
273 PRK01438 murD UDP-N-acetylmura 71.2 13 0.00028 34.4 6.6 50 68-118 13-64 (480)
274 COG0421 SpeE Spermidine syntha 70.8 10 0.00022 33.2 5.4 42 72-115 78-121 (282)
275 COG5459 Predicted rRNA methyla 70.5 13 0.00028 34.1 6.0 49 66-114 109-161 (484)
276 PF05891 Methyltransf_PK: AdoM 70.3 5.5 0.00012 33.7 3.5 45 70-116 55-100 (218)
277 PRK00536 speE spermidine synth 70.0 10 0.00022 32.9 5.2 41 70-112 72-112 (262)
278 KOG4589 Cell division protein 69.6 6.7 0.00015 32.9 3.8 32 70-101 69-103 (232)
279 COG3392 Adenine-specific DNA m 69.6 8.1 0.00017 34.0 4.4 47 56-102 8-59 (330)
280 PF00145 DNA_methylase: C-5 cy 69.1 10 0.00022 32.5 5.1 41 73-115 2-43 (335)
281 PLN02668 indole-3-acetate carb 69.0 3.4 7.3E-05 37.9 2.1 33 71-103 64-113 (386)
282 COG4262 Predicted spermidine s 67.9 6.7 0.00014 36.1 3.7 43 72-116 291-335 (508)
283 PF03721 UDPG_MGDP_dh_N: UDP-g 66.8 8.2 0.00018 31.4 3.8 36 74-111 3-40 (185)
284 PRK09880 L-idonate 5-dehydroge 66.7 21 0.00046 31.1 6.7 42 69-112 168-212 (343)
285 PF04445 SAM_MT: Putative SAM- 66.1 8.7 0.00019 32.8 3.9 37 73-111 78-114 (234)
286 cd08237 ribitol-5-phosphate_DH 65.8 19 0.00041 31.6 6.3 41 70-112 163-207 (341)
287 TIGR03366 HpnZ_proposed putati 65.5 22 0.00047 30.1 6.4 41 69-111 119-162 (280)
288 PF02086 MethyltransfD12: D12 64.5 13 0.00028 31.1 4.7 46 58-103 8-53 (260)
289 cd08283 FDH_like_1 Glutathione 64.5 18 0.00038 32.4 5.9 43 69-113 183-228 (386)
290 PF01269 Fibrillarin: Fibrilla 64.2 42 0.00091 28.6 7.7 65 45-111 44-115 (229)
291 KOG2671 Putative RNA methylase 64.0 3.2 7E-05 37.7 1.0 70 47-120 187-263 (421)
292 TIGR00675 dcm DNA-methyltransf 63.0 13 0.00028 32.8 4.6 40 74-115 1-41 (315)
293 KOG3115 Methyltransferase-like 62.0 12 0.00027 31.7 4.0 41 72-114 62-104 (249)
294 PF05050 Methyltransf_21: Meth 61.7 19 0.0004 27.4 4.9 42 76-119 1-50 (167)
295 KOG1253 tRNA methyltransferase 60.9 2.8 6.2E-05 39.5 0.1 48 71-120 110-160 (525)
296 TIGR03201 dearomat_had 6-hydro 60.9 29 0.00062 30.4 6.5 40 70-111 166-207 (349)
297 PRK08862 short chain dehydroge 60.7 30 0.00064 28.5 6.2 44 69-114 3-49 (227)
298 cd08281 liver_ADH_like1 Zinc-d 59.9 29 0.00063 30.7 6.4 40 70-111 191-233 (371)
299 PF11899 DUF3419: Protein of u 57.7 31 0.00067 31.6 6.2 58 50-114 19-77 (380)
300 TIGR02818 adh_III_F_hyde S-(hy 56.9 30 0.00064 30.7 5.9 39 70-110 185-226 (368)
301 TIGR02822 adh_fam_2 zinc-bindi 56.6 35 0.00076 29.7 6.3 41 70-112 165-207 (329)
302 PRK03369 murD UDP-N-acetylmura 56.5 20 0.00042 33.6 4.9 34 69-102 10-45 (488)
303 PF02737 3HCDH_N: 3-hydroxyacy 56.3 21 0.00045 28.8 4.4 40 74-115 2-43 (180)
304 PLN02740 Alcohol dehydrogenase 54.0 32 0.00069 30.6 5.7 41 69-111 197-240 (381)
305 cd08239 THR_DH_like L-threonin 53.9 39 0.00085 29.1 6.1 40 69-110 162-204 (339)
306 TIGR00561 pntA NAD(P) transhyd 52.7 25 0.00054 33.5 4.9 40 70-111 163-204 (511)
307 COG1004 Ugd Predicted UDP-gluc 52.7 17 0.00036 33.7 3.6 36 74-111 3-40 (414)
308 COG1062 AdhC Zn-dependent alco 52.3 30 0.00066 31.4 5.1 41 70-112 185-228 (366)
309 KOG1709 Guanidinoacetate methy 52.2 44 0.00096 28.7 5.8 43 70-114 101-144 (271)
310 PRK05867 short chain dehydroge 51.2 53 0.0012 27.0 6.3 34 69-102 7-43 (253)
311 KOG0725 Reductases with broad 50.3 66 0.0014 27.7 6.8 47 67-115 4-53 (270)
312 PF00107 ADH_zinc_N: Zinc-bind 49.0 16 0.00035 26.8 2.5 31 80-112 1-32 (130)
313 PRK08306 dipicolinate synthase 48.6 73 0.0016 27.8 6.9 36 67-102 148-185 (296)
314 cd01075 NAD_bind_Leu_Phe_Val_D 48.5 78 0.0017 25.9 6.7 43 66-112 23-69 (200)
315 TIGR00936 ahcY adenosylhomocys 48.4 28 0.0006 32.2 4.4 35 68-102 192-228 (406)
316 KOG2918 Carboxymethyl transfer 48.2 31 0.00067 31.0 4.4 56 43-101 63-122 (335)
317 COG0773 MurC UDP-N-acetylmuram 48.1 17 0.00037 34.1 2.9 33 79-112 16-50 (459)
318 PRK00421 murC UDP-N-acetylmura 47.7 28 0.00061 32.1 4.4 36 68-103 4-42 (461)
319 PRK08339 short chain dehydroge 46.7 71 0.0015 26.7 6.4 34 69-102 6-42 (263)
320 PRK06124 gluconate 5-dehydroge 46.3 78 0.0017 25.9 6.5 35 68-102 8-45 (256)
321 PF00070 Pyr_redox: Pyridine n 46.1 65 0.0014 21.8 5.1 24 80-103 6-33 (80)
322 cd08300 alcohol_DH_class_III c 45.2 74 0.0016 28.0 6.6 39 70-110 186-227 (368)
323 PRK09242 tropinone reductase; 44.7 78 0.0017 26.0 6.3 44 69-114 7-53 (257)
324 cd08230 glucose_DH Glucose deh 44.2 89 0.0019 27.3 6.9 31 70-100 172-204 (355)
325 PLN02494 adenosylhomocysteinas 44.0 29 0.00062 32.8 3.8 51 46-102 235-287 (477)
326 PLN02586 probable cinnamyl alc 43.9 65 0.0014 28.5 6.0 33 70-102 183-217 (360)
327 PRK04690 murD UDP-N-acetylmura 43.7 34 0.00074 31.8 4.3 34 69-102 6-41 (468)
328 PF03059 NAS: Nicotianamine sy 43.5 54 0.0012 28.7 5.2 42 72-115 122-167 (276)
329 PF13450 NAD_binding_8: NAD(P) 43.4 25 0.00053 23.6 2.5 15 88-102 15-29 (68)
330 PF04072 LCM: Leucine carboxyl 43.4 1E+02 0.0023 24.6 6.6 45 72-117 80-124 (183)
331 COG0863 DNA modification methy 43.0 1.2E+02 0.0025 25.7 7.3 59 55-116 208-266 (302)
332 TIGR01832 kduD 2-deoxy-D-gluco 42.9 78 0.0017 25.7 6.0 34 69-102 3-39 (248)
333 PRK06172 short chain dehydroge 42.8 93 0.002 25.4 6.5 34 69-102 5-41 (253)
334 cd08254 hydroxyacyl_CoA_DH 6-h 42.7 81 0.0018 26.8 6.3 40 70-111 165-206 (338)
335 PRK07035 short chain dehydroge 42.2 99 0.0021 25.2 6.5 34 69-102 6-42 (252)
336 PRK12771 putative glutamate sy 42.1 31 0.00067 32.8 3.8 32 70-101 136-169 (564)
337 PRK07063 short chain dehydroge 41.7 92 0.002 25.6 6.3 34 69-102 5-41 (260)
338 TIGR01081 mpl UDP-N-acetylmura 41.7 30 0.00064 31.8 3.5 25 79-103 8-34 (448)
339 PRK08993 2-deoxy-D-gluconate 3 41.6 86 0.0019 25.8 6.1 34 69-102 8-44 (253)
340 PRK12481 2-deoxy-D-gluconate 3 41.6 76 0.0016 26.2 5.8 34 69-102 6-42 (251)
341 cd05188 MDR Medium chain reduc 41.6 1.2E+02 0.0027 24.4 7.0 41 69-111 133-175 (271)
342 COG0270 Dcm Site-specific DNA 41.4 53 0.0012 29.0 5.0 42 72-115 4-46 (328)
343 PRK00141 murD UDP-N-acetylmura 41.4 30 0.00064 32.2 3.5 35 67-102 11-48 (473)
344 COG5379 BtaA S-adenosylmethion 41.2 66 0.0014 29.0 5.4 58 50-111 47-104 (414)
345 PLN02780 ketoreductase/ oxidor 41.0 70 0.0015 28.0 5.7 43 70-114 52-97 (320)
346 PRK05876 short chain dehydroge 40.9 97 0.0021 26.1 6.4 34 69-102 4-40 (275)
347 PRK06935 2-deoxy-D-gluconate 3 40.6 1.2E+02 0.0026 24.9 6.8 44 58-102 3-49 (258)
348 PRK07792 fabG 3-ketoacyl-(acyl 40.3 1.1E+02 0.0025 26.2 6.9 36 67-102 8-46 (306)
349 cd08277 liver_alcohol_DH_like 40.2 84 0.0018 27.7 6.1 40 69-110 183-225 (365)
350 PRK02318 mannitol-1-phosphate 40.2 35 0.00077 30.8 3.7 39 73-113 2-43 (381)
351 KOG1207 Diacetyl reductase/L-x 40.0 77 0.0017 26.5 5.3 34 69-102 5-41 (245)
352 PF03492 Methyltransf_7: SAM d 39.9 24 0.00053 31.5 2.6 32 72-103 18-67 (334)
353 PRK06057 short chain dehydroge 39.3 89 0.0019 25.6 5.8 34 69-102 5-41 (255)
354 TIGR01470 cysG_Nterm siroheme 39.2 65 0.0014 26.6 4.9 40 69-108 7-48 (205)
355 TIGR03451 mycoS_dep_FDH mycoth 39.1 51 0.0011 28.9 4.5 39 70-110 176-217 (358)
356 PRK07889 enoyl-(acyl carrier p 38.9 91 0.002 25.9 5.9 34 69-102 5-43 (256)
357 cd05191 NAD_bind_amino_acid_DH 38.8 1.1E+02 0.0024 21.1 5.4 35 66-100 18-55 (86)
358 PRK06035 3-hydroxyacyl-CoA deh 38.7 65 0.0014 27.7 5.0 39 72-112 4-44 (291)
359 PRK07533 enoyl-(acyl carrier p 38.6 1.3E+02 0.0028 24.9 6.7 35 68-102 7-46 (258)
360 PF06564 YhjQ: YhjQ protein; 38.5 32 0.0007 29.5 3.0 24 79-102 11-40 (243)
361 PF01488 Shikimate_DH: Shikima 38.5 78 0.0017 24.0 4.9 46 67-114 8-56 (135)
362 PF04989 CmcI: Cephalosporin h 38.4 1.2E+02 0.0025 25.5 6.2 33 70-102 32-70 (206)
363 PF00670 AdoHcyase_NAD: S-aden 38.2 96 0.0021 25.0 5.5 36 67-102 19-56 (162)
364 PRK01390 murD UDP-N-acetylmura 38.1 41 0.00089 30.9 3.9 34 69-102 7-42 (460)
365 PRK05786 fabG 3-ketoacyl-(acyl 38.1 1.2E+02 0.0026 24.3 6.4 34 69-102 3-39 (238)
366 cd08301 alcohol_DH_plants Plan 37.9 99 0.0022 27.1 6.2 40 69-110 186-228 (369)
367 PRK08293 3-hydroxybutyryl-CoA 37.6 69 0.0015 27.5 5.0 39 73-113 5-45 (287)
368 KOG1098 Putative SAM-dependent 37.5 61 0.0013 31.9 4.9 34 70-103 44-80 (780)
369 PRK06720 hypothetical protein; 37.5 1.3E+02 0.0028 23.8 6.2 34 69-102 14-50 (169)
370 PRK11730 fadB multifunctional 37.2 60 0.0013 32.1 5.1 41 72-114 314-356 (715)
371 PRK06398 aldose dehydrogenase; 37.2 68 0.0015 26.6 4.8 32 69-100 4-38 (258)
372 PRK03806 murD UDP-N-acetylmura 37.2 50 0.0011 30.1 4.3 34 70-103 5-40 (438)
373 TIGR00518 alaDH alanine dehydr 37.1 68 0.0015 29.0 5.0 41 70-112 166-208 (370)
374 PRK08703 short chain dehydroge 37.0 1.5E+02 0.0032 24.0 6.8 34 69-102 4-40 (239)
375 cd08232 idonate-5-DH L-idonate 36.9 1.2E+02 0.0026 26.0 6.5 38 70-109 165-205 (339)
376 PRK06125 short chain dehydroge 36.9 1.3E+02 0.0028 24.7 6.4 34 69-102 5-41 (259)
377 PRK07523 gluconate 5-dehydroge 36.7 1.3E+02 0.0029 24.5 6.5 33 69-102 8-44 (255)
378 PRK12837 3-ketosteroid-delta-1 36.1 36 0.00078 32.0 3.2 30 73-102 9-39 (513)
379 PRK07819 3-hydroxybutyryl-CoA 36.1 72 0.0016 27.6 4.9 39 73-113 7-47 (286)
380 PRK14192 bifunctional 5,10-met 36.0 96 0.0021 27.1 5.7 46 56-101 144-192 (283)
381 PRK07097 gluconate 5-dehydroge 35.9 1.5E+02 0.0032 24.5 6.7 35 68-102 7-44 (265)
382 PRK12548 shikimate 5-dehydroge 35.6 2E+02 0.0044 24.8 7.7 44 58-102 113-160 (289)
383 PRK07478 short chain dehydroge 35.6 1.5E+02 0.0033 24.2 6.6 34 69-102 4-40 (254)
384 TIGR02437 FadB fatty oxidation 35.5 67 0.0014 31.8 5.0 40 73-114 315-356 (714)
385 PRK05866 short chain dehydroge 35.3 1.2E+02 0.0027 25.8 6.2 34 69-102 38-74 (293)
386 PRK05476 S-adenosyl-L-homocyst 35.2 48 0.001 30.8 3.8 35 68-102 209-245 (425)
387 PRK07062 short chain dehydroge 35.0 1.4E+02 0.0031 24.5 6.4 34 69-102 6-42 (265)
388 TIGR01202 bchC 2-desacetyl-2-h 34.8 52 0.0011 28.3 3.8 40 70-111 144-186 (308)
389 PRK01368 murD UDP-N-acetylmura 34.7 42 0.00092 31.1 3.4 33 70-102 5-38 (454)
390 PLN02178 cinnamyl-alcohol dehy 34.4 77 0.0017 28.3 5.0 33 70-102 178-212 (375)
391 TIGR02440 FadJ fatty oxidation 34.3 67 0.0015 31.7 4.9 41 72-114 305-348 (699)
392 PRK07231 fabG 3-ketoacyl-(acyl 34.1 1.5E+02 0.0032 23.9 6.3 34 69-102 3-39 (251)
393 PRK06194 hypothetical protein; 34.1 1.6E+02 0.0034 24.6 6.6 34 69-102 4-40 (287)
394 PRK06113 7-alpha-hydroxysteroi 34.1 1.5E+02 0.0033 24.2 6.5 34 69-102 9-45 (255)
395 PRK06200 2,3-dihydroxy-2,3-dih 34.1 1.2E+02 0.0025 25.1 5.7 34 69-102 4-40 (263)
396 PRK06139 short chain dehydroge 33.6 1.3E+02 0.0028 26.4 6.2 34 69-102 5-41 (330)
397 PF01262 AlaDh_PNT_C: Alanine 33.4 60 0.0013 25.6 3.7 42 70-113 19-62 (168)
398 PRK01710 murD UDP-N-acetylmura 33.1 48 0.001 30.6 3.5 32 70-102 13-47 (458)
399 cd08231 MDR_TM0436_like Hypoth 33.0 1.5E+02 0.0032 25.8 6.5 31 70-102 177-212 (361)
400 KOG0022 Alcohol dehydrogenase, 33.0 84 0.0018 28.5 4.8 41 70-112 192-235 (375)
401 PRK08085 gluconate 5-dehydroge 32.8 1.5E+02 0.0032 24.2 6.2 34 69-102 7-43 (254)
402 PRK12826 3-ketoacyl-(acyl-carr 32.6 1.8E+02 0.0038 23.4 6.5 32 70-102 5-40 (251)
403 COG1250 FadB 3-hydroxyacyl-CoA 32.5 76 0.0017 28.2 4.5 42 72-116 4-48 (307)
404 PRK05872 short chain dehydroge 32.2 1.4E+02 0.003 25.4 6.0 35 68-102 6-43 (296)
405 PF05575 V_cholerae_RfbT: Vibr 32.1 30 0.00064 28.6 1.7 48 71-120 80-129 (286)
406 PRK06701 short chain dehydroge 32.0 1.8E+02 0.0038 24.8 6.6 35 68-102 43-80 (290)
407 PRK05854 short chain dehydroge 31.8 3.3E+02 0.0072 23.4 9.5 35 68-102 11-48 (313)
408 PF13578 Methyltransf_24: Meth 31.8 24 0.00053 25.2 1.1 28 75-102 1-33 (106)
409 PRK12829 short chain dehydroge 31.8 1.7E+02 0.0037 23.8 6.4 34 69-102 9-45 (264)
410 PRK07985 oxidoreductase; Provi 31.7 1.9E+02 0.004 24.7 6.7 34 68-101 46-82 (294)
411 TIGR03206 benzo_BadH 2-hydroxy 31.6 1.8E+02 0.0039 23.4 6.4 33 70-102 2-37 (250)
412 cd08255 2-desacetyl-2-hydroxye 31.5 1.7E+02 0.0037 24.1 6.4 40 70-111 97-139 (277)
413 PRK07677 short chain dehydroge 31.3 1.7E+02 0.0037 23.9 6.3 31 72-102 2-35 (252)
414 PLN02827 Alcohol dehydrogenase 31.1 1.5E+02 0.0032 26.5 6.2 40 69-110 192-234 (378)
415 KOG1562 Spermidine synthase [A 31.1 3.8E+02 0.0082 24.1 8.4 41 61-102 164-205 (337)
416 KOG2352 Predicted spermine/spe 31.1 58 0.0013 30.8 3.6 44 73-117 51-95 (482)
417 PRK07890 short chain dehydroge 31.0 2E+02 0.0044 23.3 6.7 33 70-102 4-39 (258)
418 cd08296 CAD_like Cinnamyl alco 30.9 1.8E+02 0.0039 25.0 6.6 40 70-111 163-204 (333)
419 PRK02006 murD UDP-N-acetylmura 30.8 95 0.0021 28.9 5.1 34 69-102 5-40 (498)
420 PRK08265 short chain dehydroge 30.7 1.5E+02 0.0032 24.5 5.8 34 69-102 4-40 (261)
421 cd05213 NAD_bind_Glutamyl_tRNA 30.7 1.7E+02 0.0037 25.6 6.4 34 69-102 176-212 (311)
422 PRK07066 3-hydroxybutyryl-CoA 30.6 1.1E+02 0.0023 27.3 5.1 39 72-112 8-48 (321)
423 PRK11154 fadJ multifunctional 30.6 89 0.0019 30.9 5.0 41 72-114 310-353 (708)
424 PRK14106 murD UDP-N-acetylmura 30.5 1.6E+02 0.0035 26.7 6.5 32 69-102 3-38 (450)
425 cd02040 NifH NifH gene encodes 30.5 42 0.00091 28.1 2.4 19 85-103 22-40 (270)
426 PRK07530 3-hydroxybutyryl-CoA 30.3 1E+02 0.0022 26.4 4.9 38 72-111 5-44 (292)
427 PRK07576 short chain dehydroge 30.3 1.9E+02 0.0041 24.0 6.5 34 69-102 7-43 (264)
428 PRK08217 fabG 3-ketoacyl-(acyl 30.1 2E+02 0.0043 23.1 6.5 34 69-102 3-39 (253)
429 PRK05708 2-dehydropantoate 2-r 30.1 74 0.0016 27.7 4.0 39 72-112 3-43 (305)
430 TIGR03325 BphB_TodD cis-2,3-di 29.9 1.5E+02 0.0032 24.4 5.7 34 69-102 3-39 (262)
431 PRK04308 murD UDP-N-acetylmura 29.8 93 0.002 28.4 4.8 34 70-103 4-39 (445)
432 PRK08277 D-mannonate oxidoredu 29.8 2E+02 0.0043 23.9 6.5 35 68-102 7-44 (278)
433 KOG3178 Hydroxyindole-O-methyl 29.8 58 0.0013 29.4 3.3 41 72-113 179-219 (342)
434 cd05311 NAD_bind_2_malic_enz N 29.7 1.3E+02 0.0028 25.2 5.2 48 54-101 5-60 (226)
435 PRK06114 short chain dehydroge 29.7 2.2E+02 0.0047 23.3 6.7 34 69-102 6-42 (254)
436 PRK07814 short chain dehydroge 29.4 1.9E+02 0.0042 23.8 6.3 34 69-102 8-44 (263)
437 PRK09260 3-hydroxybutyryl-CoA 29.4 1E+02 0.0022 26.4 4.7 38 73-112 3-42 (288)
438 PRK06523 short chain dehydroge 29.3 1.1E+02 0.0024 25.1 4.8 34 68-101 6-42 (260)
439 PRK06138 short chain dehydroge 29.0 1.7E+02 0.0038 23.6 5.9 34 69-102 3-39 (252)
440 PRK06949 short chain dehydroge 28.7 2E+02 0.0044 23.3 6.3 34 69-102 7-43 (258)
441 PRK06603 enoyl-(acyl carrier p 28.6 2.1E+02 0.0046 23.7 6.5 33 69-101 6-43 (260)
442 COG1743 Adenine-specific DNA m 28.5 81 0.0018 31.8 4.2 46 69-116 89-134 (875)
443 PRK05808 3-hydroxybutyryl-CoA 28.5 1.1E+02 0.0023 26.2 4.7 36 73-110 5-42 (282)
444 COG0677 WecC UDP-N-acetyl-D-ma 28.5 47 0.001 30.9 2.5 36 73-110 11-48 (436)
445 TIGR01035 hemA glutamyl-tRNA r 28.2 2E+02 0.0044 26.3 6.7 35 68-102 177-214 (417)
446 PF07101 DUF1363: Protein of u 28.1 23 0.0005 26.3 0.4 12 75-86 7-18 (124)
447 PF12242 Eno-Rase_NADH_b: NAD( 28.1 1.7E+02 0.0036 20.8 4.7 42 60-102 28-74 (78)
448 PRK07825 short chain dehydroge 28.0 1.8E+02 0.0039 24.0 5.9 34 69-102 3-39 (273)
449 PRK08945 putative oxoacyl-(acy 27.9 2.1E+02 0.0046 23.2 6.3 34 68-102 9-46 (247)
450 PRK07831 short chain dehydroge 27.8 2.3E+02 0.0049 23.3 6.5 34 69-102 15-52 (262)
451 PRK10037 cell division protein 27.8 45 0.00096 28.0 2.2 20 84-103 22-41 (250)
452 TIGR02354 thiF_fam2 thiamine b 27.8 54 0.0012 26.9 2.6 34 68-101 18-54 (200)
453 PRK09422 ethanol-active dehydr 27.7 1.9E+02 0.0041 24.7 6.1 39 70-110 162-203 (338)
454 cd08245 CAD Cinnamyl alcohol d 27.7 2.3E+02 0.0049 24.1 6.6 39 70-110 162-202 (330)
455 PF04672 Methyltransf_19: S-ad 27.6 92 0.002 27.2 4.0 46 72-119 70-120 (267)
456 cd08238 sorbose_phosphate_red 27.5 92 0.002 28.1 4.3 42 70-113 175-222 (410)
457 PRK04663 murD UDP-N-acetylmura 27.3 1.1E+02 0.0023 28.1 4.7 35 69-103 4-43 (438)
458 KOG2912 Predicted DNA methylas 27.0 39 0.00084 30.7 1.6 42 75-120 107-152 (419)
459 PRK08213 gluconate 5-dehydroge 27.0 2.3E+02 0.005 23.1 6.4 34 68-102 9-46 (259)
460 PRK06129 3-hydroxyacyl-CoA deh 26.9 1.2E+02 0.0027 26.2 4.8 37 73-111 4-42 (308)
461 PRK08643 acetoin reductase; Va 26.7 2.4E+02 0.0052 23.0 6.4 32 71-102 2-36 (256)
462 PF00743 FMO-like: Flavin-bind 26.6 64 0.0014 30.7 3.2 32 72-103 2-35 (531)
463 cd01078 NAD_bind_H4MPT_DH NADP 26.6 3.1E+02 0.0066 21.8 6.8 38 65-102 22-62 (194)
464 PLN03154 putative allyl alcoho 26.5 2.3E+02 0.0049 24.8 6.5 40 70-111 158-200 (348)
465 PF07015 VirC1: VirC1 protein; 26.5 66 0.0014 27.5 2.9 21 89-109 27-47 (231)
466 COG0069 GltB Glutamate synthas 26.3 1.7E+02 0.0037 27.8 5.8 88 33-120 236-372 (485)
467 COG1233 Phytoene dehydrogenase 26.1 89 0.0019 29.2 4.0 31 72-102 4-36 (487)
468 PRK10083 putative oxidoreducta 26.1 2E+02 0.0043 24.6 6.0 33 70-102 160-196 (339)
469 COG1179 Dinucleotide-utilizing 26.0 62 0.0013 28.1 2.7 35 68-102 27-64 (263)
470 PRK10309 galactitol-1-phosphat 26.0 2.1E+02 0.0046 24.7 6.2 39 70-110 160-201 (347)
471 PRK06841 short chain dehydroge 26.0 2.2E+02 0.0047 23.1 6.0 34 69-102 13-49 (255)
472 PRK12769 putative oxidoreducta 25.9 81 0.0018 30.6 3.8 33 70-102 326-360 (654)
473 PRK08303 short chain dehydroge 25.8 1.2E+02 0.0027 26.2 4.6 33 69-101 6-41 (305)
474 PRK06128 oxidoreductase; Provi 25.8 2.9E+02 0.0064 23.4 7.0 33 69-101 53-88 (300)
475 PRK09072 short chain dehydroge 25.7 2E+02 0.0044 23.6 5.8 33 70-102 4-39 (263)
476 PRK05717 oxidoreductase; Valid 25.6 2.1E+02 0.0046 23.3 5.9 35 68-102 7-44 (255)
477 PRK08589 short chain dehydroge 25.5 2.5E+02 0.0055 23.3 6.4 33 69-101 4-39 (272)
478 PRK09186 flagellin modificatio 25.4 2.5E+02 0.0054 22.7 6.3 33 70-102 3-38 (256)
479 PRK07109 short chain dehydroge 25.4 2.4E+02 0.0051 24.7 6.4 34 69-102 6-42 (334)
480 PRK08226 short chain dehydroge 25.4 2.6E+02 0.0056 22.9 6.4 34 69-102 4-40 (263)
481 PRK06718 precorrin-2 dehydroge 25.3 1.6E+02 0.0034 24.2 5.0 35 68-102 7-43 (202)
482 PRK08416 7-alpha-hydroxysteroi 25.3 2.8E+02 0.006 22.8 6.6 34 68-101 5-41 (260)
483 PRK06171 sorbitol-6-phosphate 25.2 1.5E+02 0.0032 24.4 4.9 33 69-101 7-42 (266)
484 PRK10458 DNA cytosine methylas 25.1 1.4E+02 0.003 28.1 5.0 42 71-114 88-130 (467)
485 PRK00045 hemA glutamyl-tRNA re 25.1 2.4E+02 0.0053 25.8 6.6 35 68-102 179-216 (423)
486 KOG2017 Molybdopterin synthase 25.0 2.9E+02 0.0063 25.4 6.8 33 70-102 65-100 (427)
487 PRK07904 short chain dehydroge 25.0 2.4E+02 0.0053 23.3 6.2 33 70-102 7-43 (253)
488 PLN02172 flavin-containing mon 24.9 95 0.0021 28.9 3.9 33 70-102 9-43 (461)
489 COG0286 HsdM Type I restrictio 24.8 1.8E+02 0.0039 27.4 5.8 48 71-120 187-240 (489)
490 TIGR01281 DPOR_bchL light-inde 24.8 58 0.0013 27.4 2.3 19 85-103 21-39 (268)
491 KOG2013 SMT3/SUMO-activating c 24.8 74 0.0016 30.4 3.1 33 70-102 11-46 (603)
492 PRK12845 3-ketosteroid-delta-1 24.8 74 0.0016 30.5 3.2 29 73-101 18-47 (564)
493 cd08240 6_hydroxyhexanoate_dh_ 24.7 2.4E+02 0.0052 24.3 6.3 39 70-110 175-216 (350)
494 PRK06153 hypothetical protein; 24.6 70 0.0015 29.5 2.9 34 69-102 174-210 (393)
495 PLN02253 xanthoxin dehydrogena 24.4 2.4E+02 0.0051 23.4 6.0 34 69-102 16-52 (280)
496 PRK05875 short chain dehydroge 24.4 2.5E+02 0.0053 23.2 6.1 34 69-102 5-41 (276)
497 PF00899 ThiF: ThiF family; I 24.4 74 0.0016 23.9 2.6 32 71-102 2-36 (135)
498 PRK08328 hypothetical protein; 24.2 81 0.0018 26.4 3.1 34 69-102 25-61 (231)
499 cd01065 NAD_bind_Shikimate_DH 24.2 3.1E+02 0.0067 20.5 7.0 39 62-102 10-53 (155)
500 TIGR01087 murD UDP-N-acetylmur 24.2 83 0.0018 28.6 3.3 29 74-103 2-33 (433)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.80 E-value=5.2e-19 Score=143.46 Aligned_cols=81 Identities=42% Similarity=0.668 Sum_probs=52.9
Q ss_pred eEEEEeccCcCCcceeechhHHHHHHHHHhc------cCCCCCCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHH
Q 028514 35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQ------RYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEV 106 (208)
Q Consensus 35 ~~v~i~~~~~~~~G~~~W~as~~La~fl~~~------~~~~~~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~ 106 (208)
..|.|.+....++|.++|++|++|++|+..+ ...+++++|||||||+|++|+++|++ +++|++||+++ +
T Consensus 4 ~~l~i~e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~---~ 80 (173)
T PF10294_consen 4 KTLQIEEDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE---V 80 (173)
T ss_dssp -------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----H
T ss_pred cccccccccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---h
Confidence 3588888888899999999999999999984 56788999999999999999999999 56999999985 9
Q ss_pred HHHHHHHHHhcC
Q 028514 107 LKNMRRVCEMNK 118 (208)
Q Consensus 107 l~~~~~n~~~n~ 118 (208)
+++++.|++.|+
T Consensus 81 l~~l~~Ni~~N~ 92 (173)
T PF10294_consen 81 LELLRRNIELNG 92 (173)
T ss_dssp HHHHHHHHHTT-
T ss_pred hHHHHHHHHhcc
Confidence 999999999987
No 2
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.51 E-value=7.9e-14 Score=122.09 Aligned_cols=130 Identities=22% Similarity=0.305 Sum_probs=93.5
Q ss_pred CceEEEEeccCcCCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHH
Q 028514 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 33 ~~~~v~i~~~~~~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~ 111 (208)
..+.|.|.+.+..+||.| +...+-.++|... ..++++|||+|||+|+++|+++++|+ +|+++|+++ .+++.++
T Consensus 128 ~~~~I~idPg~AFGTG~H--~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp--~Av~~a~ 201 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHH--PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDP--LAVEAAR 201 (295)
T ss_dssp TSEEEEESTTSSS-SSHC--HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSC--HHHHHHH
T ss_pred CcEEEEECCCCcccCCCC--HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCH--HHHHHHH
Confidence 457899999999999998 3444555555443 23678999999999999999999999 799999997 6999999
Q ss_pred HHHHhcCCC--------------CchHHHHHHHH-----------HhhcCCCeEEEEeecccchhhhHHHHHhHcCCeEE
Q 028514 112 RVCEMNKLN--------------SFDDLFATITY-----------LLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCV 166 (208)
Q Consensus 112 ~n~~~n~~~--------------~fD~il~t~~~-----------ll~~~~~~~~~~~~~~r~~~~~i~~~~~~~g~~~~ 166 (208)
+|++.|++. .||.|++++.. -+.++++..+++.......+.....+ ++ |+.+.
T Consensus 202 ~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~-~~-g~~~~ 279 (295)
T PF06325_consen 202 ENAELNGVEDRIEVSLSEDLVEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAY-KQ-GFELV 279 (295)
T ss_dssp HHHHHTT-TTCEEESCTSCTCCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHH-HT-TEEEE
T ss_pred HHHHHcCCCeeEEEEEecccccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHH-HC-CCEEE
Confidence 999999987 67776664332 12335567777776665555445544 44 88887
Q ss_pred EEec
Q 028514 167 KLVD 170 (208)
Q Consensus 167 ~l~~ 170 (208)
+..+
T Consensus 280 ~~~~ 283 (295)
T PF06325_consen 280 EERE 283 (295)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6643
No 3
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=6.4e-13 Score=116.14 Aligned_cols=132 Identities=17% Similarity=0.270 Sum_probs=94.9
Q ss_pred CceEEEEeccCcCCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHH
Q 028514 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 33 ~~~~v~i~~~~~~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~ 111 (208)
..+.|++.+.+..++|+|- ....-.+++.+... ++++|||+|||+|+++|+++++|+ +|+++|+++ .+++.++
T Consensus 129 ~~~~i~lDPGlAFGTG~Hp--TT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp--~AV~aa~ 202 (300)
T COG2264 129 DELNIELDPGLAFGTGTHP--TTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDP--QAVEAAR 202 (300)
T ss_pred CceEEEEccccccCCCCCh--hHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCCceEEEecCCH--HHHHHHH
Confidence 4688999999999999982 33333344433221 678999999999999999999999 599999996 6999999
Q ss_pred HHHHhcCCC-----------------CchHHHHHHHH-----------HhhcCCCeEEEEeecccchhhhHHHHHhHcCC
Q 028514 112 RVCEMNKLN-----------------SFDDLFATITY-----------LLQSSPGSVFITTYHNRSGHHLIEFLMVKWGL 163 (208)
Q Consensus 112 ~n~~~n~~~-----------------~fD~il~t~~~-----------ll~~~~~~~~~~~~~~r~~~~~i~~~~~~~g~ 163 (208)
.|+..|++. +||.|++++.- -+.++++..+++.--.+..+ .+.....+.||
T Consensus 203 eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~-~V~~a~~~~gf 281 (300)
T COG2264 203 ENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILEDQAE-SVAEAYEQAGF 281 (300)
T ss_pred HHHHHcCCchhhhcccccchhhcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehHhHHH-HHHHHHHhCCC
Confidence 999999986 78887665321 12234566666664444433 23333466788
Q ss_pred eEEEEecC
Q 028514 164 KCVKLVDG 171 (208)
Q Consensus 164 ~~~~l~~~ 171 (208)
...+....
T Consensus 282 ~v~~~~~~ 289 (300)
T COG2264 282 EVVEVLER 289 (300)
T ss_pred eEeEEEec
Confidence 88877544
No 4
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.38 E-value=1.7e-13 Score=112.61 Aligned_cols=74 Identities=26% Similarity=0.434 Sum_probs=70.3
Q ss_pred CCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 45 ~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.+|.+.|.+++.||.|+..+++-++||+|||+|+|+|++++++|+.|+ .|+++|+.+ -.+.+++.|++.|+.+
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P--~~~~ai~lNa~angv~ 128 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDP--WLEQAIRLNAAANGVS 128 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCCh--HHHHHhhcchhhccce
Confidence 5689999999999999999999999999999999999999999999999 699999996 6999999999999987
No 5
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.3e-12 Score=104.69 Aligned_cols=124 Identities=26% Similarity=0.447 Sum_probs=95.1
Q ss_pred CCcceeechhHHHHHHHHHhccCCCCCCeEEEeccC-CChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC-
Q 028514 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN- 120 (208)
Q Consensus 45 ~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G-~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~- 120 (208)
+.+..++||+..+||.++.+++..+.|++|||||.| +|+.|+.+|.... .|.+||.+. +.++++++..-.|..+
T Consensus 4 ntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne--~svrnv~ki~~~n~~s~ 81 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNE--ESVRNVEKIRNSNMASS 81 (201)
T ss_pred CCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCH--HHHHHHHHHHhcccccc
Confidence 344568999999999999999999999999999999 8999999887654 799999996 7999999888777544
Q ss_pred ---------------------CchHHHH---------------HHHHHhhcCCCeEEEEeecccchhhhHHHHHhHcCCe
Q 028514 121 ---------------------SFDDLFA---------------TITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLK 164 (208)
Q Consensus 121 ---------------------~fD~il~---------------t~~~ll~~~~~~~~~~~~~~r~~~~~i~~~~~~~g~~ 164 (208)
.||.|++ ++.++|.+.+.+.++++.+.++.+++.... +.-||.
T Consensus 82 ~tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~-~~~gf~ 160 (201)
T KOG3201|consen 82 LTSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEV-GTVGFT 160 (201)
T ss_pred cceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHH-HhceeE
Confidence 5666554 455567777777777766666666655544 556654
Q ss_pred EEEEecCC
Q 028514 165 CVKLVDGF 172 (208)
Q Consensus 165 ~~~l~~~~ 172 (208)
+. +.++|
T Consensus 161 v~-l~eny 167 (201)
T KOG3201|consen 161 VC-LEENY 167 (201)
T ss_pred EE-ecccH
Confidence 43 44555
No 6
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.27 E-value=5.5e-11 Score=101.59 Aligned_cols=122 Identities=21% Similarity=0.299 Sum_probs=92.6
Q ss_pred EEEeccCcCCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc-C-CeEEEEecCChHHHHHHHHHHH
Q 028514 37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 37 v~i~~~~~~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~-g-~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
+.|.| ...|++.--.|++|++|+... ..++|||||||+|++|+++|++ . ++|+++++++ ++.+.|++|+
T Consensus 18 ~~I~q---~~~~~~~~~DaiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~--~~a~~A~~nv 88 (248)
T COG4123 18 FFIIQ---DRCGFRYGTDAILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQE--EAAEMAQRNV 88 (248)
T ss_pred eEEEe---CCCccccccHHHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCH--HHHHHHHHHH
Confidence 77888 668999999999999998653 2579999999999999999987 4 5899999995 8999999999
Q ss_pred HhcCCC--------------------CchHHHH---------------------------------HHHHHhhcCCCeEE
Q 028514 115 EMNKLN--------------------SFDDLFA---------------------------------TITYLLQSSPGSVF 141 (208)
Q Consensus 115 ~~n~~~--------------------~fD~il~---------------------------------t~~~ll~~~~~~~~ 141 (208)
+.|++. .||.|++ ....++.+ +|...
T Consensus 89 ~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~-~G~l~ 167 (248)
T COG4123 89 ALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP-GGRLA 167 (248)
T ss_pred HhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC-CCEEE
Confidence 999887 3555444 33334444 44444
Q ss_pred EEeecccchhhhHHHHHhHcCCeEEEEec
Q 028514 142 ITTYHNRSGHHLIEFLMVKWGLKCVKLVD 170 (208)
Q Consensus 142 ~~~~~~r~~~~~i~~~~~~~g~~~~~l~~ 170 (208)
++....|..+ +..+++++++.+.++..
T Consensus 168 ~V~r~erl~e--i~~~l~~~~~~~k~i~~ 194 (248)
T COG4123 168 FVHRPERLAE--IIELLKSYNLEPKRIQF 194 (248)
T ss_pred EEecHHHHHH--HHHHHHhcCCCceEEEE
Confidence 4444444433 66677999999998853
No 7
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.18 E-value=2.6e-10 Score=97.36 Aligned_cols=131 Identities=18% Similarity=0.264 Sum_probs=92.9
Q ss_pred CceEEEEeccCcCCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHH
Q 028514 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 33 ~~~~v~i~~~~~~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~ 111 (208)
....+.+.+.+..++|. .+.+..+.+++.... .++++|||+|||+|.+++.+++.|+ +|+++|+++ .+++.++
T Consensus 86 ~~~~i~i~p~~afgtg~--h~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~--~~l~~A~ 159 (250)
T PRK00517 86 DEINIELDPGMAFGTGT--HPTTRLCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP--QAVEAAR 159 (250)
T ss_pred CeEEEEECCCCccCCCC--CHHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH--HHHHHHH
Confidence 44678888888788887 555666666665432 2678999999999999999999888 599999996 7999999
Q ss_pred HHHHhcCCC----------CchHHHHHHH-----H------HhhcCCCeEEEEeecccchhhhHHHHHhHcCCeEEEEec
Q 028514 112 RVCEMNKLN----------SFDDLFATIT-----Y------LLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVD 170 (208)
Q Consensus 112 ~n~~~n~~~----------~fD~il~t~~-----~------ll~~~~~~~~~~~~~~r~~~~~i~~~~~~~g~~~~~l~~ 170 (208)
+|+..|++. .||.|+++.. . -+.++++..++........+ .+.....+.|+...+..+
T Consensus 160 ~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~-~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 160 ENAELNGVELNVYLPQGDLKADVIVANILANPLLELAPDLARLLKPGGRLILSGILEEQAD-EVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHcCCCceEEEccCCCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHhhHH-HHHHHHHHCCCEEEEEEE
Confidence 999999883 4887754321 1 12345556665544433322 344455788998876643
No 8
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.13 E-value=4.7e-10 Score=97.80 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=66.3
Q ss_pred CceEEEEeccCcCCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHH
Q 028514 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 33 ~~~~v~i~~~~~~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~ 111 (208)
..+.+.+.+.+..++|.+ +...+..+++.... .++++|||+|||+|.+++.+++.|+ +|+++|+++ .+++.++
T Consensus 126 ~~~~i~ldpg~aFgtG~h--~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~--~al~~a~ 199 (288)
T TIGR00406 126 DALIIMLDPGLAFGTGTH--PTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDP--LAVESAR 199 (288)
T ss_pred CcEEEEECCCCcccCCCC--HHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCH--HHHHHHH
Confidence 447788999888888877 55555555554432 2678999999999999999999887 899999996 7999999
Q ss_pred HHHHhcCCC
Q 028514 112 RVCEMNKLN 120 (208)
Q Consensus 112 ~n~~~n~~~ 120 (208)
+|+..|++.
T Consensus 200 ~n~~~n~~~ 208 (288)
T TIGR00406 200 KNAELNQVS 208 (288)
T ss_pred HHHHHcCCC
Confidence 999988764
No 9
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.12 E-value=6.4e-10 Score=95.06 Aligned_cols=128 Identities=31% Similarity=0.552 Sum_probs=88.1
Q ss_pred EEEeccCcCCcceeechhHHHHHHHHHhccC------CCC-----CCeEEEeccCCChHHHHHhh-cCCeEEEEecCChH
Q 028514 37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRY------RFS-----GANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRI 104 (208)
Q Consensus 37 v~i~~~~~~~~G~~~W~as~~La~fl~~~~~------~~~-----~~~vLELG~G~Gl~sl~~a~-~g~~V~~tD~~~~~ 104 (208)
..+......+.+.++|+++-.++.++..... .+. .++|||||+|||++|+.+|. .+++|+.+|...
T Consensus 42 ~~~~~~~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-- 119 (248)
T KOG2793|consen 42 TVIESGLEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-- 119 (248)
T ss_pred eecccccccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchh--
Confidence 3334444467888999999999999876543 222 33699999999999999998 678999999986
Q ss_pred HHHHHHHHHHHhcCCC--------------------------C-chH---------------HHHHHHHHhhcCCCeEEE
Q 028514 105 EVLKNMRRVCEMNKLN--------------------------S-FDD---------------LFATITYLLQSSPGSVFI 142 (208)
Q Consensus 105 ~~l~~~~~n~~~n~~~--------------------------~-fD~---------------il~t~~~ll~~~~~~~~~ 142 (208)
.+++++.|...|+.. . ||. ++.++..++.+++ .+++
T Consensus 120 -~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~-~i~l 197 (248)
T KOG2793|consen 120 -VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDG-TIFL 197 (248)
T ss_pred -hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCC-eEEE
Confidence 788888776554433 2 444 4455555666666 6677
Q ss_pred EeecccchhhhHHHHHhHcCCeEEEE
Q 028514 143 TTYHNRSGHHLIEFLMVKWGLKCVKL 168 (208)
Q Consensus 143 ~~~~~r~~~~~i~~~~~~~g~~~~~l 168 (208)
..+.++.+...++.+..++-+...++
T Consensus 198 ~~~lr~~~~~~~~~~~~~~~~~~~~v 223 (248)
T KOG2793|consen 198 AYPLRRDAAWEIEVLLFKKDLKIFDV 223 (248)
T ss_pred EEecccchHHHHHHHHhhhhhcccee
Confidence 77777655444555555555555544
No 10
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.3e-09 Score=89.48 Aligned_cols=53 Identities=32% Similarity=0.331 Sum_probs=47.1
Q ss_pred ccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 65 ~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
....+.|+.|+|||||||++|+.++.+|+ .|+++|.++ ++++.+++|++.+..
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~--~a~ei~r~N~~~l~g 93 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDP--EALEIARANAEELLG 93 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCH--HHHHHHHHHHHhhCC
Confidence 34567899999999999999999999998 799999995 899999999997443
No 11
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.05 E-value=3e-10 Score=91.53 Aligned_cols=63 Identities=29% Similarity=0.395 Sum_probs=55.4
Q ss_pred chhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCe--EEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN--VTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 52 W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~--V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
=.++.+|++++... ++++|||||||+|.+|+.+++.+.+ |+++|.++ .+++.+++|++.|++.
T Consensus 17 d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~--~a~~~a~~n~~~n~~~ 81 (170)
T PF05175_consen 17 DAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINP--DALELAKRNAERNGLE 81 (170)
T ss_dssp HHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBH--HHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCcc
Confidence 35788999998876 4578999999999999999998774 99999995 7999999999999875
No 12
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.00 E-value=7.2e-09 Score=83.77 Aligned_cols=60 Identities=25% Similarity=0.375 Sum_probs=50.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 55 s~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+..|.+++... ++++|||+|||+|.+++.+++.+.+|+++|+++ ++++.+++|+..|+..
T Consensus 8 ~~~l~~~l~~~----~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~ 67 (179)
T TIGR00537 8 SLLLEANLREL----KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINP--FAVKELRENAKLNNVG 67 (179)
T ss_pred HHHHHHHHHhc----CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHHcCCc
Confidence 46666666432 457899999999999999999888999999996 7999999999877643
No 13
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.99 E-value=1e-09 Score=97.27 Aligned_cols=56 Identities=27% Similarity=0.470 Sum_probs=51.8
Q ss_pred HHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 62 l~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.++++.|++|.|||+|||||++|+++|++|+ +|+++|.+. +.+.+++.+..|++.
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~---ia~~a~~iv~~N~~~ 108 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS---IADFARKIVKDNGLE 108 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH---HHHHHHHHHHhcCcc
Confidence 55677789999999999999999999999999 799999984 899999999999987
No 14
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.89 E-value=5.5e-09 Score=88.60 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=47.1
Q ss_pred CCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.|++|||+|||.|+++..+|+.|++|+++|+++ ++++.++..+..+++.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se--~~I~~Ak~ha~e~gv~ 107 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASE--KPIEVAKLHALESGVN 107 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCCh--HHHHHHHHhhhhcccc
Confidence 6889999999999999999999999999999996 7999999999888876
No 15
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.2e-08 Score=89.32 Aligned_cols=48 Identities=31% Similarity=0.505 Sum_probs=43.9
Q ss_pred CCeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.+|||||||.|.+|+.+|+... +++++|.+. .+++.+++|++.|+++
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~--~Av~~ar~Nl~~N~~~ 208 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNA--RAVESARKNLAANGVE 208 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCH--HHHHHHHHhHHHcCCC
Confidence 34899999999999999999875 899999996 7999999999999876
No 16
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.82 E-value=2.7e-08 Score=87.72 Aligned_cols=49 Identities=20% Similarity=0.141 Sum_probs=45.3
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++.+|||+|||+|.+++.+|+.+++|+++|+++ .+++.+++|++.|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~--~av~~A~~n~~~~~l~ 221 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISA--EAIACAKQSAAELGLT 221 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCH--HHHHHHHHHHHHcCCC
Confidence 567999999999999999999999999999996 7999999999998874
No 17
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.81 E-value=3e-07 Score=75.65 Aligned_cols=111 Identities=26% Similarity=0.336 Sum_probs=74.7
Q ss_pred CCeEEEeccCCChHHHHHhh--cCCeEEEEecCChHHHHHHHHHHHHhcCCC----------------CchHHHHH----
Q 028514 71 GANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN----------------SFDDLFAT---- 128 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~--~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~----------------~fD~il~t---- 128 (208)
+.+|||+|||+|..++.+++ .+++|+++|.++ +|++.+++|++.+++. +||.|++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~--~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~~~ 123 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLG--KKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAVAS 123 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcH--HHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccccC
Confidence 68999999999999998876 346999999996 7999999999988764 46766552
Q ss_pred -------HHHHhhcCCCeEEEEeecccchhhhHHHHHhHcCCeEEEEecCCccCCcccccccCCcEEEEEEE
Q 028514 129 -------ITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVDGFSFLPHYKARELNGNIQLAEIV 193 (208)
Q Consensus 129 -------~~~ll~~~~~~~~~~~~~~r~~~~~i~~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~i~l~~i~ 193 (208)
...+| ++++..++....... ..++.+.+..|+...+..+- .+| .+++.-|+..|.
T Consensus 124 ~~~~l~~~~~~L-kpGG~lv~~~~~~~~--~~l~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~ 185 (187)
T PRK00107 124 LSDLVELCLPLL-KPGGRFLALKGRDPE--EEIAELPKALGGKVEEVIEL--TLP-----GLDGERHLVIIR 185 (187)
T ss_pred HHHHHHHHHHhc-CCCeEEEEEeCCChH--HHHHHHHHhcCceEeeeEEE--ecC-----CCCCcEEEEEEe
Confidence 22233 344444444333322 33677778889988877442 122 345555655543
No 18
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.80 E-value=4.3e-08 Score=90.31 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 55 s~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+..|.+.+.......++.+|||||||+|.+++.+|+.+++|+++|.++ +|++.+++|++.|++.
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~--~al~~A~~n~~~~~~~ 345 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVE--AMVERARENARRNGLD 345 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCH--HHHHHHHHHHHHcCCC
Confidence 455666555433333567999999999999999999989999999996 7999999999988764
No 19
>PRK14968 putative methyltransferase; Provisional
Probab=98.80 E-value=8e-08 Score=77.20 Aligned_cols=64 Identities=27% Similarity=0.303 Sum_probs=54.0
Q ss_pred eechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 50 ~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
..|+.+.+|++++.. .++++|||+|||+|..++.++..+++|+++|+++ ++++.+++|+..++.
T Consensus 7 ~p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~--~~~~~a~~~~~~~~~ 70 (188)
T PRK14968 7 EPAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINP--YAVECAKCNAKLNNI 70 (188)
T ss_pred CcchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcceEEEEECCH--HHHHHHHHHHHHcCC
Confidence 456778888887764 2567999999999999999998899999999995 799999999876654
No 20
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.79 E-value=6.4e-08 Score=79.06 Aligned_cols=49 Identities=27% Similarity=0.472 Sum_probs=42.0
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++++|||+|||+|.+++.+|..+ ++|+++|.++ +|++.+++|++.+++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~--~~~~~a~~~~~~~~~~ 92 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNH--KKVAFLREVKAELGLN 92 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcH--HHHHHHHHHHHHhCCC
Confidence 57899999999999999888765 4799999996 6999999998877653
No 21
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.78 E-value=1.9e-08 Score=74.27 Aligned_cols=49 Identities=31% Similarity=0.407 Sum_probs=43.1
Q ss_pred CCCeEEEeccCCChHHHHHhh--cCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~--~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++.+|||||||+|..++.+++ .+++|+++|+++ ++++.+++|+..++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~ 51 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISP--EMLEIARERAAEEGLS 51 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSH--HHHHHHHHHHHHTTTT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHhcCCC
Confidence 467999999999999999999 788999999995 7999999999655543
No 22
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.78 E-value=9.1e-09 Score=88.23 Aligned_cols=46 Identities=24% Similarity=0.409 Sum_probs=41.6
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhc
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n 117 (208)
.|++|||+|||+|++|..+|+.|++|+++|.++ +|++.|++....+
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga~V~GID~s~--~~V~vA~~h~~~d 134 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGAQVTGIDASD--DMVEVANEHKKMD 134 (282)
T ss_pred CCceEEEeccCccccchhhHhhCCeeEeecccH--HHHHHHHHhhhcC
Confidence 468899999999999999999999999999996 7999999986544
No 23
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.75 E-value=6.1e-08 Score=87.59 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=45.3
Q ss_pred CCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
..+.+|||||||+|.+++.+|..+.+|+++|.++ .+++.+++|++.|++.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~--~av~~a~~N~~~~~~~ 281 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIES--EAIACAQQSAQMLGLD 281 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 3567999999999999999999888999999996 7999999999998874
No 24
>PRK14967 putative methyltransferase; Provisional
Probab=98.73 E-value=7.7e-08 Score=80.61 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=53.6
Q ss_pred echhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 51 ~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.=..+..|++++.... ..++.+|||+|||+|.+++.+++.++ +|+++|+++ .+++.+++|+..++..
T Consensus 18 p~~ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~--~~l~~a~~n~~~~~~~ 85 (223)
T PRK14967 18 PQEDTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISR--RAVRSARLNALLAGVD 85 (223)
T ss_pred CCCcHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCH--HHHHHHHHHHHHhCCe
Confidence 3345778888876532 22567999999999999999998887 899999996 7999999999877643
No 25
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.1e-08 Score=89.16 Aligned_cols=65 Identities=26% Similarity=0.313 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 53 ~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.+..|.+.+...... ...+|||||||+|.+++.+|+.+. .|+++|+++ ++++.|++|+..|++.
T Consensus 94 ~dTe~Lve~~l~~~~~-~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~--~Al~~A~~Na~~~~l~ 160 (280)
T COG2890 94 PDTELLVEAALALLLQ-LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISP--DALALARENAERNGLV 160 (280)
T ss_pred CchHHHHHHHHHhhhh-cCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCH--HHHHHHHHHHHHcCCc
Confidence 3455566654321111 112799999999999999999886 899999996 7999999999999843
No 26
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.66 E-value=1.9e-07 Score=76.97 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=43.3
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
++.+|||+|||+|..++.+|+.|++|+++|+++ ++++.++++++.+++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~--~~i~~a~~~~~~~~~ 77 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNP--MSIANLERIKAAENL 77 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHHcCC
Confidence 567999999999999999999999999999995 799999998877654
No 27
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.66 E-value=2.1e-07 Score=76.65 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=43.5
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++.+|||+|||+|..++.+|+.|.+|+++|+++ .|++.++++++.+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~--~~l~~a~~~~~~~~~~ 78 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNP--ASIASVLDMKARENLP 78 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHHHhCCC
Confidence 457999999999999999999999999999995 7999999888776653
No 28
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.64 E-value=2.1e-08 Score=82.89 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=42.4
Q ss_pred CCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.++..++||||||.|..++++|++|.+|+++|.++ ..++.+++.++.++++
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~--~al~~l~~~a~~~~l~ 78 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISP--VALEKLQRLAEEEGLD 78 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSH--HHHHHHHHHHHHTT-T
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCH--HHHHHHHHHHhhcCce
Confidence 44667999999999999999999999999999996 6999998888887776
No 29
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=2.8e-08 Score=86.03 Aligned_cols=61 Identities=44% Similarity=0.716 Sum_probs=53.5
Q ss_pred CCcceeechhHHHHHHHHHhc---cCCCCCCeEEEeccCCChHHHHHhhcC-CeEEEEecCChHHHH
Q 028514 45 EEYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVL 107 (208)
Q Consensus 45 ~~~G~~~W~as~~La~fl~~~---~~~~~~~~vLELG~G~Gl~sl~~a~~g-~~V~~tD~~~~~~~l 107 (208)
.++|+++|.||+.|..++... .-.+.+|+|||||||+|++++.+.+.| ..|++.|++. +.+
T Consensus 88 yEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na--~vl 152 (282)
T KOG2920|consen 88 YEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNA--EVL 152 (282)
T ss_pred eecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecch--hhe
Confidence 368999999999999999865 456789999999999999999999998 5899999996 355
No 30
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.63 E-value=2.4e-07 Score=82.30 Aligned_cols=47 Identities=28% Similarity=0.456 Sum_probs=42.0
Q ss_pred CCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhc
Q 028514 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n 117 (208)
+++.+|||+|||+|.++..+++.|++|+++|.++ ++++.+++++..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~--~~i~~Ar~~~~~~ 176 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVD--KNVKIARLHADMD 176 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhc
Confidence 4677999999999999999999999999999996 7999999887654
No 31
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.62 E-value=7.1e-07 Score=72.58 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=42.0
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
++.+|||+|||+|.+++.+++.+ .+|+++|.++ ++++.+++|++.+++
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~--~~~~~a~~n~~~~~~ 80 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNP--DALRLIKENRQRFGC 80 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhCC
Confidence 56799999999999999988865 4899999996 799999999987654
No 32
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.59 E-value=4.3e-07 Score=83.25 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=50.1
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 55 s~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+..|.+.+......-++.+|||+|||+|.+++.+|+.+.+|+++|.++ .+++.+++|+..|++.
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~--~av~~a~~n~~~~~~~ 340 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVP--ESVEKAQQNAELNGIA 340 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCH--HHHHHHHHHHHHhCCC
Confidence 333444443322222457899999999999999999888999999996 7999999999988875
No 33
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.55 E-value=1.2e-06 Score=85.12 Aligned_cols=49 Identities=31% Similarity=0.272 Sum_probs=45.0
Q ss_pred CCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++++|||||||+|.+++.+++.|+ +|+++|+++ .+++.+++|++.|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~--~al~~a~~N~~~ng~~ 587 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSN--TYLEWAERNFALNGLS 587 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCC
Confidence 578999999999999999999988 699999996 7999999999999763
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.51 E-value=5.2e-07 Score=78.51 Aligned_cols=49 Identities=29% Similarity=0.453 Sum_probs=43.9
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++++|||+|||+|..++.+++.|.+|+++|.++ .+++.++++++.+++.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~--~ai~~~~~~~~~~~l~ 168 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQ--QSLENLQEIAEKENLN 168 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHcCCc
Confidence 456999999999999999999999999999996 7999999998876654
No 35
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.50 E-value=5.4e-07 Score=76.88 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=42.2
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (208)
++.+|||+|||+|..++.+++.|.+|+++|+++ +|++.+++++..++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~--~~l~~a~~~~~~~g 90 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSA--EMIQRAKQAAEAKG 90 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcC
Confidence 456999999999999999999999999999996 79999999887654
No 36
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.50 E-value=4.6e-07 Score=74.55 Aligned_cols=64 Identities=20% Similarity=0.256 Sum_probs=51.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 55 s~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.+...+.......+.++++|||+||+|.+|+.++.+|+ +|+++|.+. .+++.+++|++.|++.
T Consensus 34 ~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~--~a~~~~~~N~~~~~~~ 98 (189)
T TIGR00095 34 RVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDR--KANQTLKENLALLKSG 98 (189)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHhCCc
Confidence 344444333222335788999999999999999999998 899999996 7999999999999875
No 37
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.47 E-value=4.3e-07 Score=82.32 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 53 ~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
.++.+|.+++... .+.+|||||||+|.+|+.+++.+ ++|+++|.+. .+++.+++|++.|+.
T Consensus 215 ~GtrllL~~lp~~----~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~--~Av~~A~~N~~~n~~ 277 (378)
T PRK15001 215 IGARFFMQHLPEN----LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESP--MAVASSRLNVETNMP 277 (378)
T ss_pred hHHHHHHHhCCcc----cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCc
Confidence 4466666655322 23589999999999999998875 5899999996 799999999988863
No 38
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.46 E-value=1e-06 Score=79.15 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=43.6
Q ss_pred CCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.+||||+||+|.+|+.+++...+|+++|.+. ++++.+++|+..|++.
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~--~av~~a~~n~~~~~~~ 245 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAK--PSVNAAQYNIAANNID 245 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 34799999999999999998878999999996 7999999999999875
No 39
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.45 E-value=3.8e-06 Score=69.09 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=42.7
Q ss_pred CCCCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
..++.+|||+|||+|.+++.+++. +.+|+++|.++ ++++.+++|+..+++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~--~~~~~a~~n~~~~g~ 90 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE--KAINLTRRNAEKFGV 90 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHhCC
Confidence 346789999999999999988764 34899999996 799999999988874
No 40
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.44 E-value=3.9e-06 Score=68.92 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=43.6
Q ss_pred CCCeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+|.+++|+|||||-+++-+|..+. +|+++|.++ ++++.+++|++..+.+
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~--~a~~~~~~N~~~fg~~ 84 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE--EALELIERNAARFGVD 84 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhCCC
Confidence 577999999999999998886654 899999996 8999999999988766
No 41
>PRK04148 hypothetical protein; Provisional
Probab=98.43 E-value=7.7e-07 Score=69.58 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=68.8
Q ss_pred HHHHHHHhccCCCCCCeEEEeccCCCh-HHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC-CchHHHHHHHHHhh
Q 028514 57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-SFDDLFATITYLLQ 134 (208)
Q Consensus 57 ~La~fl~~~~~~~~~~~vLELG~G~Gl-~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~fD~il~t~~~ll~ 134 (208)
.+++||..+....++++|||+|||.|. ++..+++.|.+|+++|.++ ..++.++++ ... ..|+++.....+.
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~--~aV~~a~~~----~~~~v~dDlf~p~~~~y- 75 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINE--KAVEKAKKL----GLNAFVDDLFNPNLEIY- 75 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH--HHHHHHHHh----CCeEEECcCCCCCHHHH-
Confidence 477888776554567899999999997 9999999999999999996 577777665 333 2344443222111
Q ss_pred cCCCeEEEEeecccchhhhHHHHHhHcCCeEE
Q 028514 135 SSPGSVFITTYHNRSGHHLIEFLMVKWGLKCV 166 (208)
Q Consensus 135 ~~~~~~~~~~~~~r~~~~~i~~~~~~~g~~~~ 166 (208)
...-.+++..-.+.....+-.++++-|..+.
T Consensus 76 -~~a~liysirpp~el~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 76 -KNAKLIYSIRPPRDLQPFILELAKKINVPLI 106 (134)
T ss_pred -hcCCEEEEeCCCHHHHHHHHHHHHHcCCCEE
Confidence 1233455555555666667777787776554
No 42
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.42 E-value=2.5e-06 Score=71.74 Aligned_cols=67 Identities=27% Similarity=0.231 Sum_probs=51.0
Q ss_pred echhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 51 ~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.++.+..+.+.+..... -.+++|||+|||+|.+++.+++. +.+|+++|.++ .+++.+++|+..+++.
T Consensus 69 p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~~~ 137 (251)
T TIGR03534 69 PRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISP--EALAVARKNAARLGLD 137 (251)
T ss_pred CCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 45566666666554322 13468999999999999998886 45899999995 7999999999876653
No 43
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.41 E-value=4.6e-06 Score=68.38 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=42.0
Q ss_pred CCCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++.+|||+|||+|.+++.+++. +.+|+++|.++ ++++.+++|++.+++.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~--~~~~~a~~n~~~~~~~ 90 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDE--EVVNLIRRNCDRFGVK 90 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCC
Confidence 5679999999999999988765 35899999995 7999999999876553
No 44
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.40 E-value=8.4e-07 Score=69.65 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=41.4
Q ss_pred CCCeEEEeccCCChHHHHHh-hc--CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAA-KV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a-~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++.+|||||||+|..++.++ +. +++++++|+++ +|++.++++++.+++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~--~~i~~a~~~~~~~~~~ 54 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISE--EMIEYAKKRAKELGLD 54 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSH--HHHHHHHHHHHHTTST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcH--HHHHHhhccccccccc
Confidence 46799999999999999999 44 56999999996 7999999998876664
No 45
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.40 E-value=5.1e-06 Score=76.12 Aligned_cols=63 Identities=22% Similarity=0.184 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 53 ~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
+....|.+.+..... ++.+|||+|||+|.+++.+++. +++|+++|+++ ++++.+++|++.++.
T Consensus 236 peTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~--~ALe~AreNa~~~g~ 300 (423)
T PRK14966 236 PETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP--PALETARKNAADLGA 300 (423)
T ss_pred ccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCC
Confidence 345566666654322 4568999999999999988764 45899999995 799999999987654
No 46
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=3.7e-07 Score=72.34 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=49.9
Q ss_pred HHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 59 a~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
..-|.....++.|++++|||||+|.+++.++..++ .|++.|+++ ++++.+.+|++.-.++
T Consensus 37 ~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdp--eALEIf~rNaeEfEvq 97 (185)
T KOG3420|consen 37 LYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDP--EALEIFTRNAEEFEVQ 97 (185)
T ss_pred HHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCH--HHHHHHhhchHHhhhh
Confidence 33344456678999999999999999998888887 699999995 8999999999865543
No 47
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.39 E-value=5.2e-06 Score=75.74 Aligned_cols=48 Identities=29% Similarity=0.223 Sum_probs=43.9
Q ss_pred CCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
++++|||||||+|.+++.++..|+ +|+++|.++ .+++.+++|++.|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~--~al~~a~~N~~~Ngl 268 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQ--EALDIARQNVELNKL 268 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCC
Confidence 578999999999999998887777 899999996 799999999999986
No 48
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.39 E-value=7.2e-07 Score=74.29 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=43.2
Q ss_pred CCCCeEEEeccCCChHHHHHhhcCC---eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 69 FSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
-++.+|||+|||+|..++.+++... +|+++|+++ ++++.+++|+..+++.
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~--~~~~~A~~~~~~~g~~ 128 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP--ELAEKAERRLRKLGLD 128 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHCCCC
Confidence 3678999999999999999888754 499999995 7999999999887764
No 49
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.39 E-value=1.9e-06 Score=77.54 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 54 as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.+..|.+++...... .+.++|||+||+|.+|+.+++...+|+++|.++ .+++.+++|+..|++.
T Consensus 191 ~~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~--~ai~~a~~N~~~~~~~ 254 (362)
T PRK05031 191 VNEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARNFRRVLATEISK--PSVAAAQYNIAANGID 254 (362)
T ss_pred HHHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhhCCEEEEEECCH--HHHHHHHHHHHHhCCC
Confidence 355566665543221 235799999999999999988877999999996 7999999999999875
No 50
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.37 E-value=7.4e-07 Score=75.57 Aligned_cols=44 Identities=25% Similarity=0.210 Sum_probs=39.0
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
++.+|||+|||+|..+..+++.+.+|+++|+++ +|++.++++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~--~~l~~a~~~~~ 85 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSP--PMLAQARQKDA 85 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH--HHHHHHHhhCC
Confidence 457899999999999999888899999999996 79999988753
No 51
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=6.5e-06 Score=71.79 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=48.0
Q ss_pred HHHhccCCCCCCeEEEeccCCChHHHHHhhc-CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 61 fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.+......-+|++|||+|||.|-+++.+|+. |.+|+++++++ ++.+.+++.+..-++.
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE--EQLAYAEKRIAARGLE 121 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH--HHHHHHHHHHHHcCCC
Confidence 3444444447899999999999999999887 78999999996 6999999988877765
No 52
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.36 E-value=5.8e-06 Score=73.26 Aligned_cols=58 Identities=12% Similarity=0.206 Sum_probs=43.3
Q ss_pred echhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHH
Q 028514 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 51 ~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~ 111 (208)
-|.+-+....++.. ...+++++|||+|||+|...+.++..|+ .|+++|.++ .|+..++
T Consensus 103 e~~s~~~~~~~l~~-l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~--~ml~q~~ 161 (314)
T TIGR00452 103 EWRSDIKWDRVLPH-LSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV--LFLCQFE 161 (314)
T ss_pred HHHHHHHHHHHHHh-cCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHH
Confidence 46655554444433 3456789999999999999999988887 699999986 5776543
No 53
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.34 E-value=3.1e-06 Score=75.80 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 54 as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++..|.+.+... ...+|||||||+|.+++.+++.+. +|+++|.+. .+++.+++|++.|++.
T Consensus 184 gt~lLl~~l~~~----~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~--~Al~~A~~nl~~n~l~ 246 (342)
T PRK09489 184 GSQLLLSTLTPH----TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSA--AALESSRATLAANGLE 246 (342)
T ss_pred HHHHHHHhcccc----CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 345555554322 234799999999999999988754 899999996 7999999999998875
No 54
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.33 E-value=6.9e-07 Score=79.37 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=48.5
Q ss_pred ccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 65 ~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+..+|+++.|||+|||+|++++++|+.|+ +|++++.+ +|.+.+++-++.|++.
T Consensus 172 N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS---~MAqyA~~Lv~~N~~~ 225 (517)
T KOG1500|consen 172 NHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS---EMAQYARKLVASNNLA 225 (517)
T ss_pred cccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh---HHHHHHHHHHhcCCcc
Confidence 34688999999999999999999999998 79999998 5999999999999876
No 55
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.31 E-value=7e-06 Score=69.88 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=40.3
Q ss_pred CCCeEEEeccCCChHHHHHhh----cCCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~----~g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
++.+|||+|||+|..++.+++ .+++|+++|.++ .|++.++++++.++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~--~ml~~A~~~~~~~~~ 107 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSP--AMIERCRRHIDAYKA 107 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhcCC
Confidence 567999999999999987776 256899999996 799999999976543
No 56
>PLN02244 tocopherol O-methyltransferase
Probab=98.31 E-value=7.2e-06 Score=73.18 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=41.8
Q ss_pred CCCeEEEeccCCChHHHHHhhc-CCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
++++|||+|||+|..++.+++. +++|+++|+++ .+++.+++++..+++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~--~~i~~a~~~~~~~g~ 166 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP--VQAARANALAAAQGL 166 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHhcCC
Confidence 5679999999999999988875 78999999996 699999998876654
No 57
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.30 E-value=7.2e-06 Score=76.99 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=40.8
Q ss_pred CCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
+.+|||+|||+|.+++.+++. +++|+++|+++ .+++.+++|+..+++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~--~al~~A~~N~~~~~l 187 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISL--DAIEVAKSNAIKYEV 187 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCH--HHHHHHHHHHHHcCC
Confidence 458999999999999988764 46899999995 799999999988765
No 58
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.30 E-value=4.2e-06 Score=62.34 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=42.5
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++.+|||+|||+|..++.+++.. .+|+++|+++ .+++.+++|++.+++.
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~--~~~~~a~~~~~~~~~~ 69 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNP--EALRLIERNARRFGVS 69 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCH--HHHHHHHHHHHHhCCC
Confidence 46799999999999999888763 4899999996 6999999999887654
No 59
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.28 E-value=3.6e-06 Score=70.01 Aligned_cols=50 Identities=26% Similarity=0.372 Sum_probs=43.9
Q ss_pred CCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
..++++|||+|||+|..+..+++.+.+|+++|+++ +|++.+++++..++.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~--~~i~~a~~~~~~~~~ 102 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISE--QMVQMARNRAQGRDV 102 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCC
Confidence 34678999999999999999999999999999996 799999999876543
No 60
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.28 E-value=4.1e-06 Score=71.60 Aligned_cols=62 Identities=29% Similarity=0.296 Sum_probs=48.9
Q ss_pred chhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHH
Q 028514 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 52 W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
.+.+..|.+.+.......++.+|||+|||+|.+++.+++.. .+|+++|+++ .+++.+++|+.
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~--~~l~~a~~n~~ 153 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISP--EALAVARRNAK 153 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHH
Confidence 34456667766543333356789999999999999998875 5899999996 79999999987
No 61
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.27 E-value=4.6e-06 Score=72.52 Aligned_cols=63 Identities=21% Similarity=0.145 Sum_probs=45.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc-CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 56 ~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
....+++......-+|.+|||||||.|-+++.+|+. |++|+++.++. +..+.+++.+...++.
T Consensus 48 ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~--~Q~~~a~~~~~~~gl~ 111 (273)
T PF02353_consen 48 ERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSE--EQAEYARERIREAGLE 111 (273)
T ss_dssp HHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-H--HHHHHHHHHHHCSTSS
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCH--HHHHHHHHHHHhcCCC
Confidence 334445555444447889999999999999999987 99999999996 7999999999887765
No 62
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.26 E-value=2.3e-05 Score=65.54 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=47.8
Q ss_pred HHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcC
Q 028514 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (208)
Q Consensus 59 a~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (208)
.+|+.......++++|||+|||+|.++..+++.+++|+++|.++ .+++.+++++..++
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~ 94 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASE--ENIEVARLHALESG 94 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCH--HHHHHHHHHHHHcC
Confidence 45666554455788999999999999999999999999999996 68999998876544
No 63
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.25 E-value=1.1e-05 Score=67.88 Aligned_cols=54 Identities=22% Similarity=0.152 Sum_probs=42.1
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHH
Q 028514 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 55 s~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~ 111 (208)
.-.|.+|+..... -++.+||++|||.|.-++++|.+|.+|+++|+++ .+++.+.
T Consensus 23 ~~~L~~~~~~~~~-~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~--~Ai~~~~ 76 (218)
T PRK13255 23 NPLLQKYWPALAL-PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSE--LAVEQFF 76 (218)
T ss_pred CHHHHHHHHhhCC-CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCH--HHHHHHH
Confidence 4456666653211 1457999999999999999999999999999996 6888653
No 64
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.25 E-value=8.7e-06 Score=72.20 Aligned_cols=61 Identities=20% Similarity=0.080 Sum_probs=48.4
Q ss_pred HHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 58 La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
|+..+......-++.+|||.|||+|.+.+.++..+++|+++|+++ +|++.++.|++.+++.
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~--~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDW--KMVAGARINLEHYGIE 230 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCH--HHHHHHHHHHHHhCCC
Confidence 444444322222567999999999999999999999999999995 7999999999876654
No 65
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.24 E-value=2e-06 Score=63.98 Aligned_cols=48 Identities=31% Similarity=0.347 Sum_probs=44.0
Q ss_pred CCeEEEeccCCChHHHHHhhcC-CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
|.+|||+|||+|.+.+.+++.+ .+++++|+++ .+++.+++|+..+++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~--~~~~~a~~~~~~~~~~ 49 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDP--EAVELARRNLPRNGLD 49 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSH--HHHHHHHHHCHHCTTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECH--HHHHHHHHHHHHccCC
Confidence 4689999999999999999999 7999999996 7999999999998874
No 66
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.24 E-value=2.8e-06 Score=72.05 Aligned_cols=62 Identities=21% Similarity=0.130 Sum_probs=52.6
Q ss_pred eechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHH-HHHHH
Q 028514 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-NMRRV 113 (208)
Q Consensus 50 ~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~-~~~~n 113 (208)
.++.++..|..++......+++++|||+|||+|.++..+++.|+ +|+++|.++ .|+. .+++|
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~--~~l~~~l~~~ 118 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGY--NQLAEKLRQD 118 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCH--HHHHHHHhcC
Confidence 67899999999998876667899999999999999999999987 799999996 3555 45554
No 67
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.21 E-value=4.7e-06 Score=73.89 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=42.0
Q ss_pred CCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHh
Q 028514 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
.++.+|||+|||+|.+++.+++.|++|+++|+++ .|++.+++|+..
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~--~ml~~A~~~~~~ 188 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISA--AMVAEAERRAKE 188 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHh
Confidence 4678999999999999999999999999999996 799999999864
No 68
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.21 E-value=3.4e-06 Score=70.35 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=47.5
Q ss_pred HHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC---CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 57 ~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.+..++......-++.+|||+|||+|..+..+++.. .+|+++|.++ ++++.+++|++.+++.
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~--~~~~~a~~~l~~~g~~ 127 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP--ELAEKAKKTLKKLGYD 127 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCC
Confidence 333444443333467899999999999999888753 4899999996 7999999999877654
No 69
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.20 E-value=3.4e-06 Score=70.07 Aligned_cols=49 Identities=20% Similarity=0.144 Sum_probs=42.3
Q ss_pred CCCeEEEeccCCChHHHHHhhcC-CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.+.+|||||||+|.+++.++..+ ++|+++|.++ ++++.+++|++.+++.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~--~a~~~a~~Nl~~~~~~ 102 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDR--AVAQQLIKNLATLKAG 102 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHhCCC
Confidence 56799999999999999655444 5899999995 7999999999998875
No 70
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.20 E-value=3.2e-06 Score=70.09 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=41.4
Q ss_pred CCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
++.+|||+|||+|..+..+++. +.+|+++|.++ ++++.+++|+..++.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~--~~~~~a~~~l~~~~~ 122 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVK--ELAIYAAQNIERLGY 122 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCC
Confidence 5679999999999999888764 35899999996 799999999988765
No 71
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.19 E-value=2.5e-05 Score=65.18 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=40.2
Q ss_pred CCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
++++|||+|||+|..+..+++. +.+|+++|+++ ++++.+++|++.+++
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~--~~~~~a~~~~~~~~~ 95 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE--NMLSVGRQKVKDAGL 95 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHhcCC
Confidence 4679999999999999988764 34899999995 799999999865443
No 72
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.19 E-value=6.3e-06 Score=71.88 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=42.5
Q ss_pred CCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+++|||+|||+|.+++.+++.. ++|+++|+++ ++++.+++|+..|++.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~--~al~~A~~n~~~~~~~ 171 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISP--DALAVAEINIERHGLE 171 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 4689999999999999998864 5899999996 7999999999988763
No 73
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.18 E-value=4.4e-06 Score=66.94 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=40.6
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHh
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
.+.+|||+|||+|.++..+++.+.+|+++|+++ .+++.+++|+..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~--~~~~~~~~~~~~ 57 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDP--RLAPRLREKFAA 57 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCH--HHHHHHHHHhcc
Confidence 567899999999999999999888999999996 699999999854
No 74
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.18 E-value=9.5e-06 Score=72.86 Aligned_cols=67 Identities=19% Similarity=0.128 Sum_probs=51.2
Q ss_pred echhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 51 ~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
-+.....|.+++......-++ .+|||=||+|.+|+.+|+.+.+|++++.++ ++++.|++|++.|++.
T Consensus 178 N~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~--~av~~A~~Na~~N~i~ 244 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVE--EAVEDARENAKLNGID 244 (352)
T ss_dssp BHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-H--HHHHHHHHHHHHTT--
T ss_pred cHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCH--HHHHHHHHHHHHcCCC
Confidence 445566666666554332233 799999999999999999999999999996 7999999999999986
No 75
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.18 E-value=6e-06 Score=70.79 Aligned_cols=64 Identities=19% Similarity=0.120 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhccC-CCCCCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 54 CSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 54 as~~La~fl~~~~~-~~~~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
.+..|.+.+..... .....+|||||||+|.+++.+++. +.+|+++|+++ .+++.+++|+..|+.
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~--~al~~A~~N~~~~~~ 135 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDP--AAVRCARRNLADAGG 135 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHcCC
Confidence 45566665543211 112358999999999999988765 45899999996 799999999988764
No 76
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1.2e-05 Score=74.18 Aligned_cols=64 Identities=22% Similarity=0.147 Sum_probs=53.6
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 55 s~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+..|.+++.......++.++|||=||.|.+|+.+|+...+|+++++++ ++++.|++|++.|++.
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~--~aV~~A~~NA~~n~i~ 341 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISP--EAVEAAQENAAANGID 341 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCH--HHHHHHHHHHHHcCCC
Confidence 445555555444434567999999999999999999999999999996 7999999999999987
No 77
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.17 E-value=4.9e-06 Score=72.01 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=44.9
Q ss_pred HHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHh
Q 028514 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 59 a~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
++.+......-++.+|||+|||+|.++..+++.+.+|+++|.++ +|++.+++|+..
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~--~~~~~~~~~~~~ 86 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDR--DLAPILAETFAE 86 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCH--HHHHHHHHhhcc
Confidence 34444433333667999999999999999999988999999996 799999988743
No 78
>PLN02672 methionine S-methyltransferase
Probab=98.14 E-value=5.3e-06 Score=83.59 Aligned_cols=64 Identities=22% Similarity=0.117 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHhccC-CCCCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcC
Q 028514 53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK 118 (208)
Q Consensus 53 ~as~~La~fl~~~~~-~~~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (208)
+.+..|++.+...+. .+++++|||||||+|.+++.+++.. ++|+++|+++ ++++.+++|+..|+
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~--~Al~~A~~Na~~n~ 166 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINP--RAVKVAWINLYLNA 166 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcC
Confidence 557777777654432 3467799999999999999998865 4899999996 79999999999874
No 79
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.14 E-value=1.8e-05 Score=67.61 Aligned_cols=59 Identities=24% Similarity=0.213 Sum_probs=47.4
Q ss_pred eechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHh
Q 028514 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 50 ~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
+.|....+-.- ..-+|.+|||+|||||-.++.+++.. ++|+++|+++ .||+.+++.+..
T Consensus 37 ~~Wr~~~i~~~------~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~--~ML~~a~~k~~~ 97 (238)
T COG2226 37 RLWRRALISLL------GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISE--SMLEVAREKLKK 97 (238)
T ss_pred HHHHHHHHHhh------CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCH--HHHHHHHHHhhc
Confidence 58887643322 11168899999999999999998876 5899999996 699999998875
No 80
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.14 E-value=9.5e-06 Score=67.20 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=47.2
Q ss_pred HHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 58 La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+..++......-++.+|||+|||+|..+..+++.+.+|+++|.++ ++++.+++|++.+++.
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~--~~~~~a~~~~~~~~~~ 126 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIK--TLQWEAKRRLKQLGLH 126 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCH--HHHHHHHHHHHHCCCC
Confidence 333443333333567999999999999998888877999999995 7999999998876543
No 81
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.4e-06 Score=71.34 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=70.9
Q ss_pred CceeEEEEecCCCCCCceEEEEeccCcCCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEE
Q 028514 18 MTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTL 97 (208)
Q Consensus 18 ~~~~~~~~f~~~~~~~~~~v~i~~~~~~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~ 97 (208)
|..++++.|-+.. +.-.-..++.-..|.-.|-++-.+...+.+....-++.+|||+|||+|..+-.+|+...+|+.
T Consensus 24 ~~~vPRe~FVp~~----~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~s 99 (209)
T COG2518 24 FLAVPRELFVPAA----YKHLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVS 99 (209)
T ss_pred HHhCCHHhccCch----hhcccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEE
Confidence 5566777776521 112222333223333344444333333333333336789999999999999999999989999
Q ss_pred EecCChHHHHHHHHHHHHhcCCC-----------------CchHHHHH
Q 028514 98 TDDSNRIEVLKNMRRVCEMNKLN-----------------SFDDLFAT 128 (208)
Q Consensus 98 tD~~~~~~~l~~~~~n~~~n~~~-----------------~fD~il~t 128 (208)
++... ++.+.|++|++..++. +||.|+-+
T Consensus 100 iEr~~--~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vt 145 (209)
T COG2518 100 IERIE--ELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVT 145 (209)
T ss_pred EEEcH--HHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEe
Confidence 99996 7999999999988873 88888764
No 82
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.13 E-value=1.3e-05 Score=68.15 Aligned_cols=62 Identities=23% Similarity=0.211 Sum_probs=40.1
Q ss_pred eechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc-C--CeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 50 ~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
+.|.. .+++.+.. -+|.+|||+|||||.++..+++. + .+|+++|+++ .|++.+++++...+.
T Consensus 33 ~~wr~--~~~~~~~~----~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~--~ML~~a~~k~~~~~~ 97 (233)
T PF01209_consen 33 RRWRR--KLIKLLGL----RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISP--GMLEVARKKLKREGL 97 (233)
T ss_dssp ----S--HHHHHHT------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-H--HHHHHHHHHHHHTT-
T ss_pred HHHHH--HHHhccCC----CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCH--HHHHHHHHHHHhhCC
Confidence 57877 34444422 25679999999999999988775 3 4899999996 799999998876543
No 83
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.10 E-value=3.7e-06 Score=59.35 Aligned_cols=43 Identities=30% Similarity=0.374 Sum_probs=36.5
Q ss_pred EEeccCCChHHHHHhhc-CCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 75 VELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 75 LELG~G~Gl~sl~~a~~-g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
||+|||+|..+..+++. +.+|+++|.++ ++++.++++...++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~--~~~~~~~~~~~~~~~ 44 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE--EMLEQARKRLKNEGV 44 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H--HHHHHHHHHTTTSTE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH--HHHHHHHhcccccCc
Confidence 79999999999999999 77999999996 799999998876653
No 84
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.10 E-value=2.8e-05 Score=63.82 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=41.5
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
...++||+|||+|..++.+|+.. .+|+++|++. ++++.+++++..+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~--~~l~~a~~~~~~~~l~ 66 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHT--PIVLAANNKANKLGLK 66 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeH--HHHHHHHHHHHHhCCC
Confidence 34589999999999999888874 4899999996 7999999998876654
No 85
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.08 E-value=8.6e-05 Score=61.51 Aligned_cols=46 Identities=26% Similarity=0.187 Sum_probs=39.9
Q ss_pred CCCeEEEeccCCChHHHHHhhcC---CeEEEEecCChHHHHHHHHHHHHhc
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMN 117 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g---~~V~~tD~~~~~~~l~~~~~n~~~n 117 (208)
++.+|||+|||+|..++.++..+ .+|+++|+++ .+++.+++++..+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~--~~~~~a~~~~~~~ 99 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE--GMLAVGREKLRDL 99 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHHhhccc
Confidence 56799999999999999888766 6899999996 6999999987653
No 86
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.08 E-value=8.4e-06 Score=67.70 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=42.7
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
++.+|||+|||+|..+..+++.+.+|+++|.++ .|++.++++...++.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~--~~i~~a~~~~~~~~~ 110 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISP--QMVEEARERAPEAGL 110 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHhcCC
Confidence 567999999999999999999999999999996 799999998876554
No 87
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.06 E-value=1.2e-05 Score=69.05 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=46.0
Q ss_pred HHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHh
Q 028514 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 58 La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
+++.+.......++.+|||+|||+|.+++.+++.+.+|+++|+++ .+++.+++++..
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~--~~~~~l~~~~~~ 73 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDP--RLAEFLRDDEIA 73 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHhcc
Confidence 344444443444678999999999999999999988999999996 699999988753
No 88
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.06 E-value=1.2e-05 Score=69.81 Aligned_cols=46 Identities=26% Similarity=0.289 Sum_probs=41.0
Q ss_pred CeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
.+|||+|||+|.+++.+++.. .+|+++|+++ ++++.+++|+..+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~--~al~~a~~n~~~~~~ 163 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISP--DALAVAEENAEKNQL 163 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHcCC
Confidence 689999999999999998865 4899999996 799999999987765
No 89
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.05 E-value=1.1e-05 Score=66.84 Aligned_cols=49 Identities=16% Similarity=0.057 Sum_probs=41.6
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.+.+|||+|||+|..++.+++.. .+|+++|+++ ++++.+++|+..+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~--~~i~~a~~~~~~~~~~ 90 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHE--PGVGKALKKIEEEGLT 90 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEech--HHHHHHHHHHHHcCCC
Confidence 45689999999999999887763 4799999996 7999999998877654
No 90
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.05 E-value=8.7e-06 Score=72.36 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=40.3
Q ss_pred CCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHHHhc-CCC
Q 028514 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN-KLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~ 120 (208)
+.++||||||+|.+...++.. +.+++++|+++ .+++.+++|++.| ++.
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~--~Al~~A~~Nv~~Np~l~ 165 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDP--QALASAQAIISANPGLN 165 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCH--HHHHHHHHHHHhccCCc
Confidence 468999999998777665543 56999999996 7999999999999 565
No 91
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.05 E-value=1.8e-05 Score=68.16 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=37.8
Q ss_pred CCCeEEEeccCCChHHHHHhh-cCCeEEEEecCChHHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
++.+|||+|||+|..+..+++ .+++|+++|+++ .+++.++++..
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~--~~~~~a~~~~~ 96 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICE--KMVNIAKLRNS 96 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCH--HHHHHHHHHcC
Confidence 567999999999999988766 467999999995 79999998764
No 92
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.04 E-value=1.7e-05 Score=67.48 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=37.5
Q ss_pred CCCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
++.+|||+|||+|.++..+++. +.+|+++|+++ .|++.++++.
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~--~~i~~a~~~~ 75 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSP--AMLAEARSRL 75 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhC
Confidence 5679999999999999988875 46899999996 7999998875
No 93
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.04 E-value=1.7e-05 Score=70.01 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=41.7
Q ss_pred CeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++|||+|||+|.+++.+++.. .+|+++|+++ .+++.+++|++.+++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~--~al~~A~~n~~~~~l~ 183 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISP--DALAVAEINIERHGLE 183 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCC
Confidence 589999999999999998764 5899999996 7999999999988753
No 94
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.03 E-value=8.8e-05 Score=61.54 Aligned_cols=46 Identities=17% Similarity=0.024 Sum_probs=38.6
Q ss_pred CeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
++|||+|||+|..+..+++.. .+|+++|+++ ++++.+++++...++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~--~~~~~a~~~~~~~gl 48 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISP--EQAEVGRERIRALGL 48 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHhcCC
Confidence 479999999999999888763 5899999985 799999998876443
No 95
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.01 E-value=3.2e-05 Score=70.23 Aligned_cols=45 Identities=27% Similarity=0.254 Sum_probs=39.5
Q ss_pred CCCCeEEEeccCCChHHHHHhhc-CCeEEEEecCChHHHHHHHHHHHH
Q 028514 69 FSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~-g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
-++.+|||+|||+|.+++.+++. |++|+++|+++ ++++.+++++.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~--~~l~~A~~~~~ 211 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA--EQQKLAQERCA 211 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhc
Confidence 36789999999999999988874 78999999996 79999999874
No 96
>PRK06202 hypothetical protein; Provisional
Probab=98.01 E-value=7.3e-06 Score=68.80 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=38.5
Q ss_pred CCCeEEEeccCCChHHHHHhh----cC--CeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 70 SGANVVELGAGTSLPGLVAAK----VG--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~----~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
++.+|||||||+|.++..+++ .| .+|+++|+++ +|++.++++...+++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~--~~l~~a~~~~~~~~~ 113 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP--RAVAFARANPRRPGV 113 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH--HHHHHHHhccccCCC
Confidence 456899999999999887764 34 4899999996 799999988655443
No 97
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.00 E-value=1.8e-05 Score=65.77 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=37.6
Q ss_pred CCCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
++.+|||+|||+|..+..+++. +.+++++|+++ +|++.++++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~--~~l~~A~~~~ 87 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINE--YAVEKAKAYL 87 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH--HHHHHHHhhC
Confidence 5668999999999999988876 56999999996 7999998874
No 98
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.99 E-value=3.1e-05 Score=63.72 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhccCCC---CC-CeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 53 PCSVILAEYVWQQRYRF---SG-ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 53 ~as~~La~fl~~~~~~~---~~-~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++-..+.+|+..+...+ +. .+|||||||.|.+-.-+++.|. +.+++||++ .++++|+..++.++.+
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~--~AV~LA~niAe~~~~~ 117 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSE--KAVELAQNIAERDGFS 117 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCH--HHHHHHHHHHHhcCCC
Confidence 44556677776543211 22 2899999999999999999887 599999996 7999988877777765
No 99
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.99 E-value=1.8e-05 Score=67.15 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=45.2
Q ss_pred CeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHH--------HHh------cCCCCchHHHHHHHH
Q 028514 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV--------CEM------NKLNSFDDLFATITY 131 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n--------~~~------n~~~~fD~il~t~~~ 131 (208)
+++||||||||+.|..+-.+-.+.+++|+|. .|++.+.++ ++. +.-..||.|.+++++
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~--nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISE--NMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred ceeeecccCcCcccHhHHHHHhhccCCchhH--HHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 5899999999999999887888999999997 599888753 111 222288988887664
No 100
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.97 E-value=5.4e-05 Score=69.00 Aligned_cols=98 Identities=24% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC-----------------------CchH
Q 028514 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-----------------------SFDD 124 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~-----------------------~fD~ 124 (208)
.+|++||+|=|=||-.|+.+|+.|| +|+.+|++. ..++.+++|+++|++. +||.
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~--~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSK--RALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccH--HHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 3689999999999999999999999 899999996 6999999999999986 5666
Q ss_pred HHH------------------------HHHHHhhcCCCeEEEEeecccchhhhHHHHH---hHcCCeEEEE
Q 028514 125 LFA------------------------TITYLLQSSPGSVFITTYHNRSGHHLIEFLM---VKWGLKCVKL 168 (208)
Q Consensus 125 il~------------------------t~~~ll~~~~~~~~~~~~~~r~~~~~i~~~~---~~~g~~~~~l 168 (208)
|+- ....+|.+++..++++++.....+.++..+. ...+.....+
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 543 1112455566666677777777666655554 3344455544
No 101
>PRK04266 fibrillarin; Provisional
Probab=97.97 E-value=2.7e-05 Score=65.89 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=47.4
Q ss_pred cceeechh------HHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHH
Q 028514 47 YGLFVWPC------SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 47 ~G~~~W~a------s~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
.++++|.. +.+|+.| .....-++.+|||+|||+|..++.+++.. .+|+++|.++ +|++.+.+++.
T Consensus 45 ~~~~~~~~~r~~~~~~ll~~~--~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~--~ml~~l~~~a~ 117 (226)
T PRK04266 45 VEYREWNPRRSKLAAAILKGL--KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP--RPMRELLEVAE 117 (226)
T ss_pred cEEEEECCCccchHHHHHhhH--hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCH--HHHHHHHHHhh
Confidence 45566754 5555555 11223367799999999999999988863 4899999996 68887766654
No 102
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.96 E-value=0.0003 Score=63.08 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=38.5
Q ss_pred CCCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHHHhcC
Q 028514 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (208)
.+.+|||||||+|..++.+++. +.+|+++|.++ +|++.++++...++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~--~mL~~A~~k~~~~~ 161 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSP--HQLAKAKQKEPLKE 161 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHhhhccC
Confidence 4569999999999999887764 35899999995 79999998865443
No 103
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.95 E-value=7.1e-05 Score=66.45 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=41.2
Q ss_pred echhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHH
Q 028514 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 51 ~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~ 110 (208)
-|.+-..... +..+...+++++|||+|||+|..++.++..|+ .|+++|.++ .++..+
T Consensus 104 ew~s~~k~~~-l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~--~~l~q~ 161 (322)
T PRK15068 104 EWRSDWKWDR-VLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQ--LFLCQF 161 (322)
T ss_pred eehHHhHHHH-HHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHH
Confidence 3555443222 33333446789999999999999999999887 699999885 566543
No 104
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.93 E-value=2.7e-05 Score=65.29 Aligned_cols=55 Identities=20% Similarity=0.046 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHH
Q 028514 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 54 as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~ 111 (208)
..-.|.+|+..... -++.+||++|||.|.-++++|.+|.+|+++|+++ .+++.+.
T Consensus 19 p~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~--~Ai~~~~ 73 (213)
T TIGR03840 19 VNPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSE--IAVEQFF 73 (213)
T ss_pred CCHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCH--HHHHHHH
Confidence 45567777755311 1457999999999999999999999999999996 6888753
No 105
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.93 E-value=4.1e-05 Score=63.40 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=49.5
Q ss_pred chhHHHHHHHHHhcc----CCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 52 WPCSVILAEYVWQQR----YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 52 W~as~~La~fl~~~~----~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
|........|+.... ...++.+|||+|||+|..+..+++.+++|+++|.++ .+++.+++++..++.
T Consensus 23 ~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~~ 92 (224)
T TIGR01983 23 HKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASE--ENIEVAKLHAKKDPL 92 (224)
T ss_pred HHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH--HHHHHHHHHHHHcCC
Confidence 333334445554322 234678999999999999999988888999999995 699999998876544
No 106
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.92 E-value=2.9e-05 Score=68.19 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=46.3
Q ss_pred HHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcC
Q 028514 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (208)
Q Consensus 60 ~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (208)
+.+.......++.+|||+|||+|.++..+++.+.+|+++|+++ ++++.+++++..++
T Consensus 26 ~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~--~li~~l~~~~~~~~ 82 (294)
T PTZ00338 26 DKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDP--RMVAELKKRFQNSP 82 (294)
T ss_pred HHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCH--HHHHHHHHHHHhcC
Confidence 3344433334677999999999999999999888999999996 79999999987654
No 107
>PHA03412 putative methyltransferase; Provisional
Probab=97.91 E-value=6.1e-06 Score=70.37 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=45.5
Q ss_pred cceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc-----CCeEEEEecCChHHHHHHHHHHHH
Q 028514 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 47 ~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~-----g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
.|...=|.+ +|+++... ...+.+|||+|||+|.+++.+++. ..+|+++|+++ .+++.+++|+.
T Consensus 30 ~GqFfTP~~--iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~--~Al~~Ar~n~~ 97 (241)
T PHA03412 30 LGAFFTPIG--LARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH--TYYKLGKRIVP 97 (241)
T ss_pred CCccCCCHH--HHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH--HHHHHHHhhcc
Confidence 455555555 34443321 123579999999999999988764 34899999996 79999999963
No 108
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.90 E-value=2.9e-05 Score=65.44 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=39.4
Q ss_pred CCCeEEEeccCCChHHHHHhhc----CCeEEEEecCChHHHHHHHHHHHHhc
Q 028514 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMN 117 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~----g~~V~~tD~~~~~~~l~~~~~n~~~n 117 (208)
++.+|||+|||+|..++.+++. +++|+++|+++ +|++.+++++...
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~--~ml~~a~~~~~~~ 102 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ--PMVERCRQHIAAY 102 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCH--HHHHHHHHHHHhc
Confidence 5678999999999999988774 46899999995 7999999998753
No 109
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.89 E-value=3.1e-05 Score=65.67 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=42.1
Q ss_pred CCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.++|||+|||+|..++.+|+. +.+|+++|.++ ++++.+++|++.+++.
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~--~~~~~A~~n~~~~gl~ 119 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK--EAYEVGLEFIKKAGVD 119 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 5679999999999988877653 34899999996 7999999999998875
No 110
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.89 E-value=0.00012 Score=62.83 Aligned_cols=48 Identities=27% Similarity=0.411 Sum_probs=39.8
Q ss_pred CCCeEEEeccCCChHHHHHhhc-CC--eEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~-g~--~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
++.+|||+|||+|..++.+++. +. +|+++|.++ ++++.+++|...+++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~--~~l~~A~~~~~~~g~ 127 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTP--EMLAKARANARKAGY 127 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCH--HHHHHHHHHHHHcCC
Confidence 5789999999999998876654 44 699999996 799999999876544
No 111
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.89 E-value=8.1e-05 Score=68.90 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=38.7
Q ss_pred CCCeEEEeccCCChHHHHHhhc-CCeEEEEecCChHHHHHHHHHHHHh
Q 028514 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~-g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
++.+|||+|||+|..++.+++. +++|+++|+++ ++++.+++|+..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~--~~l~~A~~~~~~ 311 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSV--NMISFALERAIG 311 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhhc
Confidence 5679999999999999988764 67999999995 799999988753
No 112
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.87 E-value=4.4e-05 Score=65.20 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=40.5
Q ss_pred CCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHH
Q 028514 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
.++.+|||+|||+|.++..+++.+.+|+++|.++ .+++.++.++.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~--~~~~~l~~~~~ 72 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDP--RLAEILRKLLS 72 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCH--HHHHHHHHHhC
Confidence 3577999999999999999999999999999996 69999998864
No 113
>PRK05785 hypothetical protein; Provisional
Probab=97.87 E-value=2.1e-05 Score=66.28 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=36.4
Q ss_pred CCeEEEeccCCChHHHHHhhc-CCeEEEEecCChHHHHHHHHHH
Q 028514 71 GANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~-g~~V~~tD~~~~~~~l~~~~~n 113 (208)
+.+|||+|||||.++..+++. +.+|+++|.++ +|++.++.+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~--~Ml~~a~~~ 93 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE--NMLKMNLVA 93 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH--HHHHHHHhc
Confidence 568999999999999988887 57999999996 799998865
No 114
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.87 E-value=2.4e-05 Score=57.18 Aligned_cols=45 Identities=24% Similarity=0.209 Sum_probs=36.0
Q ss_pred EEEeccCCChHHHHHhhcC-----CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 74 VVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 74 vLELG~G~Gl~sl~~a~~g-----~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
|||||||+|.....+++.. .+++++|+++ +|++.++++....+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~--~~l~~~~~~~~~~~~~ 50 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISP--EMLELAKKRFSEDGPK 50 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-H--HHHHHHHHHSHHTTTT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCH--HHHHHHHHhchhcCCc
Confidence 7999999999999888764 6899999995 7999999998765543
No 115
>PRK08317 hypothetical protein; Provisional
Probab=97.86 E-value=0.0002 Score=59.01 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=41.6
Q ss_pred HHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC---CeEEEEecCChHHHHHHHHHH
Q 028514 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 57 ~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g---~~V~~tD~~~~~~~l~~~~~n 113 (208)
.+-+.+.......++.+|||+|||+|..+..++... .+|+++|.++ .+++.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~--~~~~~a~~~ 63 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSE--AMLALAKER 63 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCH--HHHHHHHHH
Confidence 333444443333467899999999999999887653 4899999996 689999887
No 116
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.86 E-value=3.8e-05 Score=65.44 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=36.5
Q ss_pred CCCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n 113 (208)
++.+|||+|||+|.++..+++. +.+|+++|.++ .|++.++++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~--~~~~~a~~~ 72 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP--EMVAAARER 72 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHhc
Confidence 5679999999999999988887 56999999996 699988763
No 117
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.86 E-value=0.00017 Score=62.16 Aligned_cols=64 Identities=9% Similarity=-0.064 Sum_probs=49.5
Q ss_pred echhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 51 ~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.-.+|.+.+..+.. -+|.+|||+|||+|-.++.+|.. ...|+++|.++ .+++.+++|++.+++.
T Consensus 56 qd~~s~~~~~~l~~----~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~--~~l~~~~~n~~~~g~~ 122 (264)
T TIGR00446 56 QEASSMIPPLALEP----DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSK--SRTKVLIANINRCGVL 122 (264)
T ss_pred ECHHHHHHHHHhCC----CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCH--HHHHHHHHHHHHcCCC
Confidence 55666655554432 25679999999999999987764 23899999996 7999999999887754
No 118
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.86 E-value=4.6e-05 Score=59.14 Aligned_cols=39 Identities=31% Similarity=0.321 Sum_probs=34.7
Q ss_pred CCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHH
Q 028514 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKN 109 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~ 109 (208)
.++++|||+|||.|..+..+++.|.+|+++|.++ .+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~--~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISP--QMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSH--HHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCH--HHHhh
Confidence 3678999999999999999999999999999996 57766
No 119
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.85 E-value=5.4e-05 Score=67.32 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=47.6
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC---eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 55 s~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
..+++.++.. ...-++.+|||+|||+|..++.+++... +|+++|.++ ++++.+++|+..++..
T Consensus 66 p~l~a~ll~~-L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~--~~l~~Ar~~l~~~g~~ 131 (322)
T PRK13943 66 PSLMALFMEW-VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR--KICEIAKRNVRRLGIE 131 (322)
T ss_pred HHHHHHHHHh-cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 3444554432 2233567999999999999998887542 699999996 7999999999887654
No 120
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.84 E-value=0.00041 Score=57.83 Aligned_cols=33 Identities=27% Similarity=0.153 Sum_probs=28.2
Q ss_pred CCCeEEEeccCCChHHHHHhhcC---CeEEEEecCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g---~~V~~tD~~~ 102 (208)
++.+|||||||+|..+..+++.. .+|+++|+++
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 56799999999999999887763 3799999984
No 121
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=0.00017 Score=59.21 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHhccCCCC---CCeEEEeccCCChHHHHHhhc-C--CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 53 PCSVILAEYVWQQRYRFS---GANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 53 ~as~~La~fl~~~~~~~~---~~~vLELG~G~Gl~sl~~a~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.+.+|.+.|......++ .+-++|+|||+|+++-++++. + +...+||+++ ++++.-.+-+..|+..
T Consensus 23 EDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp--~A~~~Tl~TA~~n~~~ 94 (209)
T KOG3191|consen 23 EDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINP--EALEATLETARCNRVH 94 (209)
T ss_pred chhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCH--HHHHHHHHHHHhcCCc
Confidence 456666666654322222 356899999999999998875 2 3689999996 7999888888877764
No 122
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.83 E-value=0.00014 Score=62.64 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=36.7
Q ss_pred CCCeEEEeccCCChHHHHHhhc-C--CeEEEEecCChHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~-g--~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
++.+|||+|||+|..++.+++. + .+|+++|.++ +|++.++++.
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~--~ml~~A~~r~ 118 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS--EQLAVAASRQ 118 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHh
Confidence 5679999999999999988775 4 4899999996 7999998764
No 123
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=6.5e-05 Score=69.94 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 53 ~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.++.+|..++..+...-.++.++|+-||||.+|+.+|+.-.+|+++.+++ +.++-|+.|+..|+++
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~--~aV~dA~~nA~~Ngis 431 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISP--DAVEDAEKNAQINGIS 431 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecCh--hhcchhhhcchhcCcc
Confidence 45778888888766555678899999999999999999999999999997 6999999999999998
No 124
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.74 E-value=9.6e-05 Score=67.20 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=42.4
Q ss_pred CCeEEEeccCCChHHHHHhhc-CC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.+|||++||+|..|+.+|+. ++ +|++.|.++ .+++.+++|++.|++.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~--~Av~~a~~N~~~N~~~ 107 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINP--DAVELIKKNLELNGLE 107 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHhCCC
Confidence 358999999999999998775 43 899999996 7999999999999876
No 125
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.74 E-value=8.6e-05 Score=68.23 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=48.9
Q ss_pred eechh-HHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 50 FVWPC-SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 50 ~~W~a-s~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
.+-+. |..++.++.. .+|.+|||+|||+|..++.++..+ .+|+++|.++ .+++.+++|++.+++
T Consensus 227 ~iQd~~s~~~~~~l~~----~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~--~~l~~~~~n~~~~g~ 293 (427)
T PRK10901 227 SVQDAAAQLAATLLAP----QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDA--QRLERVRENLQRLGL 293 (427)
T ss_pred EEECHHHHHHHHHcCC----CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHHHHcCC
Confidence 34444 4444455532 257899999999999999888764 4899999996 699999999987654
No 126
>PTZ00146 fibrillarin; Provisional
Probab=97.73 E-value=0.00067 Score=59.62 Aligned_cols=59 Identities=19% Similarity=0.087 Sum_probs=42.7
Q ss_pred ceeechh--HHHHHHHHHhc--cCCCCCCeEEEeccCCChHHHHHhhcC---CeEEEEecCChHHHHH
Q 028514 48 GLFVWPC--SVILAEYVWQQ--RYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLK 108 (208)
Q Consensus 48 G~~~W~a--s~~La~fl~~~--~~~~~~~~vLELG~G~Gl~sl~~a~~g---~~V~~tD~~~~~~~l~ 108 (208)
-+|+|+. |.+-|..+.-. ...-++.+|||||||+|..+..+|... ..|+++|+++ +|++
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~--r~~~ 171 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSH--RSGR 171 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcH--HHHH
Confidence 4899997 55555544322 223367799999999999999888763 3799999995 4443
No 127
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.71 E-value=4.9e-05 Score=66.89 Aligned_cols=50 Identities=16% Similarity=0.247 Sum_probs=39.0
Q ss_pred chhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCC
Q 028514 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSN 102 (208)
Q Consensus 52 W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~ 102 (208)
|.+-..-.. +..+...++|++|||+|||.|..+..++..|+ .|+++|-+.
T Consensus 98 WrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~ 148 (315)
T PF08003_consen 98 WRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP 148 (315)
T ss_pred ccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh
Confidence 554443333 33344467999999999999999999999999 599999986
No 128
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.70 E-value=8.5e-05 Score=61.86 Aligned_cols=49 Identities=22% Similarity=0.277 Sum_probs=40.9
Q ss_pred CCCeEEEeccCCChHHHHHhh--cCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~--~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+|.+|+|+-||.|..++.+|+ .++.|++.|+++ .+++.+++|+++|++.
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np--~a~~~L~~Ni~lNkv~ 151 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNP--DAVEYLKENIRLNKVE 151 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-H--HHHHHHHHHHHHTT-T
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCH--HHHHHHHHHHHHcCCC
Confidence 577999999999999999999 566899999995 7999999999999987
No 129
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.69 E-value=7.2e-05 Score=65.65 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=38.7
Q ss_pred CCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHh
Q 028514 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
++.+|||||||+|.....+++. +.+|+++|++. +||+.+++++..
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~--~mL~~a~~~l~~ 110 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA--DALKESAAALAA 110 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH--HHHHHHHHHHHh
Confidence 4578999999999999987766 56899999996 799999988765
No 130
>PHA03411 putative methyltransferase; Provisional
Probab=97.65 E-value=0.00012 Score=63.80 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=46.2
Q ss_pred cceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHH
Q 028514 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 47 ~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
.|...=|.+++ ..|+.... .+.+|||+|||+|.+++.+++. +.+|+++|+++ .|++.+++|.
T Consensus 45 ~G~FfTP~~i~-~~f~~~~~---~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp--~al~~Ar~n~ 108 (279)
T PHA03411 45 SGAFFTPEGLA-WDFTIDAH---CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP--EFARIGKRLL 108 (279)
T ss_pred ceeEcCCHHHH-HHHHhccc---cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHhC
Confidence 46666677764 34543221 2458999999999999988775 45999999996 7999999874
No 131
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.64 E-value=0.00014 Score=66.99 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 53 ~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.++..++.++... ++.+|||+|||+|..++.+++. ..+|+++|+++ .+++.+++|++.+++.
T Consensus 237 ~~s~lv~~~l~~~----~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~--~~l~~~~~n~~~~g~~ 301 (444)
T PRK14902 237 ESSMLVAPALDPK----GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHE--HKLKLIEENAKRLGLT 301 (444)
T ss_pred hHHHHHHHHhCCC----CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHcCCC
Confidence 3456666655332 4678999999999999988774 34899999996 7999999999887653
No 132
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00045 Score=59.30 Aligned_cols=95 Identities=20% Similarity=0.199 Sum_probs=66.8
Q ss_pred cCCCCCCeEEEeccCCChHHHHHhh-cCC--eEEEEecCChHHHHHHHHHHHHhcCCC-----------------CchHH
Q 028514 66 RYRFSGANVVELGAGTSLPGLVAAK-VGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-----------------SFDDL 125 (208)
Q Consensus 66 ~~~~~~~~vLELG~G~Gl~sl~~a~-~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~-----------------~fD~i 125 (208)
....+|.+|||.|.|+|.++.++|. .|. +|+..|+.. +.++.|++|++.-++. .||.|
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~--d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav 167 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE--DFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAV 167 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecH--HHHHHHHHHHHHhccccceEEEeccccccccccccCEE
Confidence 3455789999999999999999986 343 899999996 7999999999885543 44443
Q ss_pred ----------HHHHHHHhhcCCCeEEEEeecccchhhhHHHHHhHcCCe
Q 028514 126 ----------FATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLK 164 (208)
Q Consensus 126 ----------l~t~~~ll~~~~~~~~~~~~~~r~~~~~i~~~~~~~g~~ 164 (208)
+..+...|.+++..++++++-. +.++..+.+. +.|+.
T Consensus 168 ~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~ve-Qv~kt~~~l~-~~g~~ 214 (256)
T COG2519 168 FLDLPDPWNVLEHVSDALKPGGVVVVYSPTVE-QVEKTVEALR-ERGFV 214 (256)
T ss_pred EEcCCChHHHHHHHHHHhCCCcEEEEEcCCHH-HHHHHHHHHH-hcCcc
Confidence 3455556767766666666554 3344555554 34653
No 133
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.63 E-value=7.2e-05 Score=62.63 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=40.5
Q ss_pred CCCCeEEEeccCCChHHHHHhhc-CC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 69 FSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~-g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
-+|.+|||+|||+|..+-++|+. |. .|+.+|..+ ++++.+++|++..+..
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~--~l~~~A~~~l~~~~~~ 123 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDP--ELAERARRNLARLGID 123 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBH--HHHHHHHHHHHHHTTH
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccH--HHHHHHHHHHHHhccC
Confidence 36789999999999999998886 33 699999995 7999999999876664
No 134
>PRK04457 spermidine synthase; Provisional
Probab=97.62 E-value=0.0012 Score=56.91 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=39.4
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK 118 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (208)
+.++|||||||+|.++..+++.. .+|+++|+++ ++++.++++...+.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp--~vi~~A~~~f~~~~ 114 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINP--QVIAVARNHFELPE 114 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHcCCCC
Confidence 35789999999999999887653 4899999996 79999999976543
No 135
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.60 E-value=0.00022 Score=62.10 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=43.7
Q ss_pred cCCCCCCeEEEeccCCChHHHHHhhc-C-CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 66 RYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 66 ~~~~~~~~vLELG~G~Gl~sl~~a~~-g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
...+++..+||+|||+|.+++.+++. + ..|+++|.+. .++..+.+|+..+.+.
T Consensus 144 ~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~--~Ai~La~eN~qr~~l~ 198 (328)
T KOG2904|consen 144 SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK--AAIKLAKENAQRLKLS 198 (328)
T ss_pred hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccH--HHHHHHHHHHHHHhhc
Confidence 34556678999999999999987664 3 3799999996 6999999999988776
No 136
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.60 E-value=0.00019 Score=59.31 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=37.3
Q ss_pred CCCCeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHH
Q 028514 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
...++|||+|||+|..+..+++.+. +|+++|.++ ++++.++.+..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~ 79 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISA--GMLAQAKTKLS 79 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChH--HHHHHHHHhcC
Confidence 3457899999999999999988775 689999995 68888887653
No 137
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.57 E-value=0.00015 Score=55.74 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=41.0
Q ss_pred eEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.+||+|||.|..++.+++.+. +|+++|.++ ++.+.+++|++.|++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~--~~~~~l~~~~~~n~~~ 48 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLP--DAYEILEENVKLNNLP 48 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCH--HHHHHHHHHHHHcCCC
Confidence 489999999999999988876 599999995 7999999999998765
No 138
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.56 E-value=0.00021 Score=62.49 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=40.6
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++.+|||+|||+|..++.+++.. .+++++|+. .+++.+++|++..++.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~---~~~~~a~~~~~~~gl~ 198 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP---GAIDLVNENAAEKGVA 198 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecH---HHHHHHHHHHHhCCcc
Confidence 45799999999999999998875 479999973 6999999999877654
No 139
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.55 E-value=0.00011 Score=60.14 Aligned_cols=50 Identities=28% Similarity=0.426 Sum_probs=41.4
Q ss_pred CCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.|.++|||=||+|.+|+-++.+|| +|+++|.+. .++..+++|++.-+..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~--~a~~~i~~N~~~l~~~ 91 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNR--KAIKIIKKNLEKLGLE 91 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHHHT-G
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCH--HHHHHHHHHHHHhCCC
Confidence 6789999999999999999999998 899999995 7999999999976655
No 140
>PRK06922 hypothetical protein; Provisional
Probab=97.53 E-value=0.00024 Score=68.41 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=38.9
Q ss_pred CCCCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHHHhc
Q 028514 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN 117 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~~~n 117 (208)
+++.+|||+|||+|..+..+++. +.+|+++|+++ .|++.+++++..+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~--~MLe~Ararl~~~ 465 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISE--NVIDTLKKKKQNE 465 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHhhhc
Confidence 35779999999999998877764 45999999996 6999999886543
No 141
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.53 E-value=0.00036 Score=64.43 Aligned_cols=67 Identities=18% Similarity=0.170 Sum_probs=50.3
Q ss_pred eeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 49 ~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.+++.+-.++..+.. ..+|.+|||+|||+|..++.++.. +.+|+++|.++ .+++.+++|++.+++.
T Consensus 232 ~~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~--~~l~~~~~~~~~~g~~ 301 (445)
T PRK14904 232 VSVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYP--QKLEKIRSHASALGIT 301 (445)
T ss_pred EEEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCH--HHHHHHHHHHHHhCCC
Confidence 4677655444444432 235789999999999999877653 34899999996 7999999999877653
No 142
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.52 E-value=0.00031 Score=64.49 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc-C-CeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 53 ~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~-g-~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
.+|..++.++... +|.+|||+|||+|..++.+++. + .+|+++|.++ .+++.+++|++.+++
T Consensus 225 ~~s~~~~~~L~~~----~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~--~~l~~~~~n~~r~g~ 287 (426)
T TIGR00563 225 ASAQWVATWLAPQ----NEETILDACAAPGGKTTHILELAPQAQVVALDIHE--HRLKRVYENLKRLGL 287 (426)
T ss_pred HHHHHHHHHhCCC----CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCH--HHHHHHHHHHHHcCC
Confidence 5677777766432 5679999999999999988774 3 5899999996 799999999987664
No 143
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.49 E-value=0.00062 Score=59.66 Aligned_cols=49 Identities=27% Similarity=0.269 Sum_probs=43.4
Q ss_pred CCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+|++||+|=|=||-+|+.+++.|| +|+.+|.+. .+++.+++|+++|+++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~--~al~~a~~N~~lNg~~ 172 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSK--RALEWAKENAALNGLD 172 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-H--HHHHHHHHHHHHTT-C
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHcCCC
Confidence 689999999999999999999998 799999996 6999999999999976
No 144
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.48 E-value=0.00025 Score=60.58 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=35.1
Q ss_pred eEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHH
Q 028514 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n 113 (208)
.++|+|||+|..++.+|....+|++||.++ +||+.+++.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~--~mL~~a~k~ 74 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSE--AMLKVAKKH 74 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCH--HHHHHhhcC
Confidence 789999999999989999988999999996 699988764
No 145
>PLN02476 O-methyltransferase
Probab=97.48 E-value=0.00038 Score=60.79 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=43.2
Q ss_pred CCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.++|||+|+|+|..++.+|+. +.+|+.+|.++ +.++.+++|++.+++.
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~--e~~~~Ar~n~~~aGl~ 169 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS--NSLEVAKRYYELAGVS 169 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 5689999999999999988873 34799999996 7999999999999886
No 146
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.46 E-value=0.00036 Score=63.57 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=41.9
Q ss_pred CCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+..+||+|||+|...+.+|+.. ..++++|++. .+++.+.+++..+++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~--~~i~~a~~ka~~~gL~ 172 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHT--PSIEQVLKQIELLNLK 172 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 4689999999999999999875 4799999996 6999999999887765
No 147
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.46 E-value=0.00044 Score=62.73 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=42.4
Q ss_pred CeEEEeccCCChHHHHHhhc--CC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 72 ANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~--g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.+|||+-||+|..|+.+++. |+ +|++.|+++ ++++.+++|++.|++.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~--~Av~~i~~N~~~N~~~ 95 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINP--KAVESIKNNVEYNSVE 95 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHhCCC
Confidence 48999999999999999886 54 899999996 7999999999999864
No 148
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.42 E-value=0.00042 Score=63.83 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC---CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 54 as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+|..++.++.. -+|.+|||+|||+|..++.+++.. .+|++.|.+. .+++.+++|++.+++.
T Consensus 240 ~s~l~~~~l~~----~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~--~rl~~~~~n~~r~g~~ 303 (434)
T PRK14901 240 SAQLVAPLLDP----QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSA--SRLKKLQENAQRLGLK 303 (434)
T ss_pred HHHHHHHHhCC----CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCH--HHHHHHHHHHHHcCCC
Confidence 45555555532 256899999999999999887752 4899999996 6999999999887653
No 149
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.39 E-value=0.0015 Score=56.14 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=41.7
Q ss_pred cCCCCCCeEEEeccCCChHHHHHhhc-C--CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 66 RYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 66 ~~~~~~~~vLELG~G~Gl~sl~~a~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
....+|.+|||-|.|+|.++.++|+. | .+|+-.|+.+ +-++.|++|++.+++.
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~--~~~~~A~~n~~~~gl~ 91 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRE--DRAEKARKNFERHGLD 91 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSH--HHHHHHHHHHHHTTCC
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCH--HHHHHHHHHHHHcCCC
Confidence 34457899999999999999999874 3 2899999995 7999999999998886
No 150
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.39 E-value=0.00053 Score=63.23 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=41.8
Q ss_pred CCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+|.+|||+|||+|-.++.++.. +.+|+++|+++ .+++.+++|++..++.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~--~rl~~~~~n~~r~g~~ 288 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISR--EKIQLVEKHAKRLKLS 288 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 5779999999999999987764 45899999996 7999999999876653
No 151
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.38 E-value=0.00044 Score=57.76 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=42.8
Q ss_pred CCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.++|||+|+++|..++.+|.. +.+|+.+|.++ +..+.+++|++..++.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~--~~~~~A~~~~~~ag~~ 96 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP--ERAEIARENFRKAGLD 96 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH--HHHHHHHHHHHHTTGG
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcH--HHHHHHHHHHHhcCCC
Confidence 4579999999999999999874 56999999995 7999999999988875
No 152
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.38 E-value=0.00014 Score=61.59 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=37.0
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
+..-|||+|||+|+.|-.+...|+..+++|+++ .||+.+.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSp--sML~~a~~ 90 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISP--SMLEQAVE 90 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCH--HHHHHHHH
Confidence 445799999999999999999999999999996 69999985
No 153
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.38 E-value=1.7e-05 Score=57.49 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=33.4
Q ss_pred EEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 75 VELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 75 LELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
||+|||+|.....++.. ..+++++|+++. |++.+++.+.....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~--~l~~a~~~~~~~~~ 45 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPS--MLERARERLAELGN 45 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSS--TTSTTCCCHHHCT-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHhhhcCC
Confidence 79999999999988776 568999999984 99877777666543
No 154
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.37 E-value=0.00043 Score=64.10 Aligned_cols=41 Identities=32% Similarity=0.281 Sum_probs=36.0
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
++++|||+|||+|..+..+++.+.+|+++|+++ +|++.++.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~--~~l~~a~~ 77 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIE--SVIKKNES 77 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCH--HHHHHHHH
Confidence 567999999999999999999888999999996 68876654
No 155
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.34 E-value=0.00073 Score=62.72 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=38.4
Q ss_pred CCCeEEEeccCCChHHHHHhhcC------CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG------SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g------~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+++.|+++|||+|.++.++++++ .+|++++.++ .++..+++.+..|+.+
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~--~A~~~l~~~v~~n~w~ 240 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP--NAVVTLQKRVNANGWG 240 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST--HHHHHHHHHHHHTTTT
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH--hHHHHHHHHHHhcCCC
Confidence 46789999999999999888876 3899999997 3666676766777774
No 156
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.00042 Score=57.09 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=46.2
Q ss_pred CCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.+.|.++|||=||+|.+|+-++.+|+ .|+++|.+. +++..+++|++.-++.
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~--~a~~~l~~N~~~l~~~ 92 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDR--KAVKILKENLKALGLE 92 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHhCCc
Confidence 46899999999999999999999998 799999996 7999999999887754
No 157
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.31 E-value=0.00093 Score=54.68 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=37.8
Q ss_pred CCCeEEEeccCCChHHHHHhhcCC---eEEEEecCChHHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~---~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
++.+|||+|||+|..+..+++.+. +++++|.++ .+++.++++..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~--~~~~~~~~~~~ 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS--EMLEVAKKKSE 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCH--HHHHHHHHHhc
Confidence 678999999999999998887654 799999995 69999988764
No 158
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.30 E-value=0.0008 Score=57.97 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=34.7
Q ss_pred CCCeEEEeccCCChHHHHHhhcC-----CeEEEEecCChHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g-----~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
...+|||+|||+|..+..+++.. ..|+++|+++ .+++.++++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~--~~l~~A~~~~ 132 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK--VAIKYAAKRY 132 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH--HHHHHHHHhC
Confidence 34689999999999998776542 3799999996 7999988763
No 159
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.29 E-value=0.00062 Score=55.31 Aligned_cols=47 Identities=21% Similarity=0.120 Sum_probs=34.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC---CeEEEEecCC
Q 028514 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN 102 (208)
Q Consensus 56 ~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g---~~V~~tD~~~ 102 (208)
..+.+....-...-++.+|||+|||+|.++..+++.. .+|+++|+++
T Consensus 18 ~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~ 67 (188)
T TIGR00438 18 FKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP 67 (188)
T ss_pred HHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc
Confidence 3444444433333467899999999999999877653 3699999986
No 160
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.27 E-value=0.00054 Score=56.78 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=42.6
Q ss_pred CeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
..+.|||+|+|++|+++|+...+|++++.++ ...+++.+|+..++..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP--k~a~~a~eN~~v~g~~ 80 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDP--KRARLAEENLHVPGDV 80 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCc--HHHHHhhhcCCCCCCc
Confidence 5789999999999999999977999999996 6999999999887765
No 161
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.25 E-value=0.00037 Score=58.84 Aligned_cols=59 Identities=25% Similarity=0.255 Sum_probs=45.0
Q ss_pred CCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHHHhc-----CCC------CchHHHHHHHH
Q 028514 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN-----KLN------SFDDLFATITY 131 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~~~n-----~~~------~fD~il~t~~~ 131 (208)
-.+|.|||||+|...-.++++ ++.|+++|-++ +|++.+++..-.- .+. .+|.|+++.++
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~--~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaNAvl 102 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSP--AMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFANAVL 102 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCH--HHHHHHHHhCCCCceecccHhhcCCCCccchhhhhhhh
Confidence 358999999999999988886 45899999885 7999997643211 111 78889988765
No 162
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.23 E-value=0.0013 Score=51.32 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=38.6
Q ss_pred CCCeEEEeccCCChHHHHHhh------cCCeEEEEecCChHHHHHHHHHHHHhcC
Q 028514 70 SGANVVELGAGTSLPGLVAAK------VGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~------~g~~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (208)
+...|+|+|||-|.+|.+++. .+.+|+++|.++ ..++.+.+..+..+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE--SLVESAQKRAQKLG 77 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc--HHHHHHHHHHHHhc
Confidence 456899999999999999888 456899999997 57787777766544
No 163
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.0027 Score=53.45 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=58.7
Q ss_pred CCeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC----------------C-chHHHHH---
Q 028514 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN----------------S-FDDLFAT--- 128 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~----------------~-fD~il~t--- 128 (208)
+++++|+|+|.|++|+.+|-... +|+++|-.. .=+..++.-...-+++ . ||.|.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~--Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLG--KKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCc--hHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 57999999999999998875543 699999886 4566666655444433 3 8876441
Q ss_pred -------HHH-HhhcCCCeEEEEeecccchhhhHHHHHhHcCCeEEEEe
Q 028514 129 -------ITY-LLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLV 169 (208)
Q Consensus 129 -------~~~-ll~~~~~~~~~~~~~~r~~~~~i~~~~~~~g~~~~~l~ 169 (208)
.+. ++..++....+-...-.......+.....+|..+.++.
T Consensus 146 ~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 146 SLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred chHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEE
Confidence 111 23333433323222222222335555678888877763
No 164
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.20 E-value=0.0011 Score=56.28 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=47.1
Q ss_pred CcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHH
Q 028514 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 46 ~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
.+|++.=...-.|.+|+..... -++.+||..|||.|.-.+++|.+|.+|+++|+++ .+++.+.+
T Consensus 20 ~~~f~~~~pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~--~Ai~~~~~ 83 (226)
T PRK13256 20 DVGFCQESPNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSE--KAVLSFFS 83 (226)
T ss_pred CCCCccCCCCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCH--HHHHHHHH
Confidence 3444333345566666654322 1567999999999999999999999999999996 57777644
No 165
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.12 E-value=0.00078 Score=54.99 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=33.3
Q ss_pred CCCeEEEeccCCChHHHHHhhc-CCeEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~-g~~V~~tD~~~~~~~l~~~~~ 112 (208)
++.+|||+|||+|.++..+++. +..++++|.++ ++++.+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~--~~i~~a~~ 54 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQ--DGVLACVA 54 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCH--HHHHHHHH
Confidence 4568999999999999888654 45889999995 68887754
No 166
>PHA01634 hypothetical protein
Probab=97.11 E-value=0.0011 Score=51.74 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=44.9
Q ss_pred CCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
.+++++|+|+|++.|-.+|..+..|| +|++...++ .+.+.+++|++.|.+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~--kl~k~~een~k~nnI 76 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE--KLRKKWEEVCAYFNI 76 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCH--HHHHHHHHHhhhhee
Confidence 46889999999999999999999999 699999886 699999999988765
No 167
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.06 E-value=0.00048 Score=56.97 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=31.5
Q ss_pred CCCeEEEeccCCChHHHHHhh-cCCeEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
+|.+|||||||.|.+--.+.. .+.+..++++++. .+.+++++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~-~v~~cv~r 55 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPD-NVAACVAR 55 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHH-HHHHHHHc
Confidence 467999999999988776655 6678999999973 44444443
No 168
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.04 E-value=0.0052 Score=55.14 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=46.2
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCe-EEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~-V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.|.+|+|+=||.|-+++.+|+.|+. |+++|+|+ .+++.+++|+.+|++.
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP--~A~~~L~eNi~LN~v~ 237 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINP--DAVEYLKENIRLNKVE 237 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCH--HHHHHHHHHHHhcCcc
Confidence 5889999999999999999999985 99999996 7999999999999987
No 169
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.03 E-value=0.0017 Score=44.95 Aligned_cols=43 Identities=33% Similarity=0.351 Sum_probs=34.3
Q ss_pred eEEEeccCCChHHHHHhh-cCCeEEEEecCChHHHHHHHHHHHHhc
Q 028514 73 NVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~~n~~~n 117 (208)
+++|+|||+|..+..+++ ...+++++|.++ .++..++++...+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~ 44 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISP--VALELARKAAAAL 44 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHhcc
Confidence 489999999999998887 455899999996 6888887544433
No 170
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.03 E-value=0.0059 Score=52.81 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=64.1
Q ss_pred CCCCCCeEEEeccCCChHHHHHhhc--------CCeEEEEecCChHHHHHHHHHHHHhcCCC---------------Cch
Q 028514 67 YRFSGANVVELGAGTSLPGLVAAKV--------GSNVTLTDDSNRIEVLKNMRRVCEMNKLN---------------SFD 123 (208)
Q Consensus 67 ~~~~~~~vLELG~G~Gl~sl~~a~~--------g~~V~~tD~~~~~~~l~~~~~n~~~n~~~---------------~fD 123 (208)
...++.++||++||||-+++.+.+. ..+|++.|+++ +||...++.++..++. +||
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp--~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINP--HMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCH--HHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCC
Confidence 3346789999999999999976542 24799999996 7999999988654443 232
Q ss_pred H--------------------HHHHHHHHhhcCCCeEEEEeecccchhhhHHHHHhHcCCeEEEE
Q 028514 124 D--------------------LFATITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKL 168 (208)
Q Consensus 124 ~--------------------il~t~~~ll~~~~~~~~~~~~~~r~~~~~i~~~~~~~g~~~~~l 168 (208)
. .+......| ++++..++.-+..-.. ..+..+...|.+++..+
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVL-KpGGrf~cLeFskv~~-~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVL-KPGGRFSCLEFSKVEN-EPLKWFYDQYSFDVLPV 237 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhc-CCCcEEEEEEcccccc-HHHHHHHHhhhhhhhch
Confidence 2 233333334 4455555555554332 35777777777766544
No 171
>PLN03075 nicotianamine synthase; Provisional
Probab=97.01 E-value=0.0013 Score=57.97 Aligned_cols=45 Identities=22% Similarity=0.185 Sum_probs=35.4
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cC--CeEEEEecCChHHHHHHHHHHHHh
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VG--SNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g--~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
..++|+|+||| .|+.++.+++ .. .+++++|.++ ++++.+++++..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~--~ai~~Ar~~~~~ 171 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP--SANDVARRLVSS 171 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHhhh
Confidence 56899999999 5566776553 33 3799999996 799999999954
No 172
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0026 Score=55.03 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=48.2
Q ss_pred echhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHH
Q 028514 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 51 ~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
+++..+ .+.+......-++..|||+|+|.|.+...+++.+++|++++++. .+++.+++...
T Consensus 13 L~d~~v--~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~--~l~~~L~~~~~ 73 (259)
T COG0030 13 LIDKNV--IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDR--RLAEVLKERFA 73 (259)
T ss_pred ccCHHH--HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCH--HHHHHHHHhcc
Confidence 444443 44555544444567999999999999999999999999999996 69999988764
No 173
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.97 E-value=0.0013 Score=56.79 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=33.2
Q ss_pred CCCeEEEeccCCCh----HHHHHhhc-------CCeEEEEecCChHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSL----PGLVAAKV-------GSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 70 ~~~~vLELG~G~Gl----~sl~~a~~-------g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
++.+||++|||+|- +++.++.. +.+|+++|+++ +|++.|++++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~--~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDL--KALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCH--HHHHHHHcCC
Confidence 34589999999996 45555543 34799999996 7999999864
No 174
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.92 E-value=0.0021 Score=56.65 Aligned_cols=47 Identities=28% Similarity=0.383 Sum_probs=35.2
Q ss_pred CeEEEeccCC-ChHHHHHhh-cCCeEEEEecCChHHHHHHHHHHHHhc-CCC
Q 028514 72 ANVVELGAGT-SLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMN-KLN 120 (208)
Q Consensus 72 ~~vLELG~G~-Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~ 120 (208)
.++||+|+|. ++..|+.++ .|-++++||+++ ..++.|++|++.| +++
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~--~sl~~A~~nv~~N~~L~ 153 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDP--KSLESARENVERNPNLE 153 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-H--HHHHHHHHHHHHT-T-T
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCH--HHHHHHHHHHHhccccc
Confidence 4799999995 677776655 466999999996 7999999999999 776
No 175
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.91 E-value=0.0025 Score=51.49 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=39.7
Q ss_pred CeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.|+|+-||.|-..+..|+.+.+|+++|+++ ..++.+++|++.-+..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~--~~~~~a~hNa~vYGv~ 47 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDP--ERLECAKHNAEVYGVA 47 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-H--HHHHHHHHHHHHTT-G
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCH--HHHHHHHHHHHHcCCC
Confidence 3689999999999999999999999999995 7999999999988765
No 176
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.87 E-value=0.0036 Score=52.85 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=42.8
Q ss_pred CCCeEEEeccCCChHHHHHhhcC---CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
..++|||+|.+.|..++.+|..- .+++.+|.++ +..+.|++|++..++.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~--e~~~~A~~n~~~ag~~ 110 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDE--ERAEIARENLAEAGVD 110 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCH--HHHHHHHHHHHHcCCc
Confidence 56899999999999999887642 3799999996 8999999999988876
No 177
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.82 E-value=0.0026 Score=55.36 Aligned_cols=83 Identities=13% Similarity=0.250 Sum_probs=63.2
Q ss_pred CCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC----
Q 028514 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---- 120 (208)
Q Consensus 45 ~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~---- 120 (208)
.+.|.++-..+.++..-+.... .=+...|||+|-|||.+...+...|++|+++++++ .|++.+++.+.-...+
T Consensus 34 kd~GQHilkNp~v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dp--rmvael~krv~gtp~~~kLq 110 (315)
T KOG0820|consen 34 KDFGQHILKNPLVIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDP--RMVAELEKRVQGTPKSGKLQ 110 (315)
T ss_pred cccchhhhcCHHHHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCc--HHHHHHHHHhcCCCccceee
Confidence 3567777777777777554432 22456899999999999999999999999999996 6999998887644322
Q ss_pred ------------CchHHHHHHH
Q 028514 121 ------------SFDDLFATIT 130 (208)
Q Consensus 121 ------------~fD~il~t~~ 130 (208)
.||.+++++.
T Consensus 111 V~~gD~lK~d~P~fd~cVsNlP 132 (315)
T KOG0820|consen 111 VLHGDFLKTDLPRFDGCVSNLP 132 (315)
T ss_pred EEecccccCCCcccceeeccCC
Confidence 6788777543
No 178
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.77 E-value=0.0027 Score=53.49 Aligned_cols=54 Identities=24% Similarity=0.205 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHH
Q 028514 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 54 as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~ 110 (208)
.+-.|.+|+... ..-.+.+||..|||.|.-.+.+|.+|.+|+++|+++ .+++.+
T Consensus 22 ~~p~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~--~Ai~~~ 75 (218)
T PF05724_consen 22 PNPALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSP--TAIEQA 75 (218)
T ss_dssp STHHHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-H--HHHHHH
T ss_pred CCHHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCH--HHHHHH
Confidence 366788887762 222456899999999999999999999999999996 577776
No 179
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=96.73 E-value=0.0016 Score=54.13 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=35.7
Q ss_pred CeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHh
Q 028514 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
.++||+|||.|.++..+|....+++++|.++ .+++.+++.+..
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~--~Al~~Ar~Rl~~ 87 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISP--RALARARERLAG 87 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-H--HHHHHHHHHTTT
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCH--HHHHHHHHhcCC
Confidence 4799999999999999999888999999996 699999987754
No 180
>PRK00811 spermidine synthase; Provisional
Probab=96.72 E-value=0.0033 Score=54.75 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=37.9
Q ss_pred CCCeEEEeccCCChHHHHHhhc-C-CeEEEEecCChHHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~-g-~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
+.++||+||||.|..+..+++. + .+|+++|+++ ++++.+++++.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~--~vv~~a~~~~~ 121 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDE--RVVEVCRKYLP 121 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCH--HHHHHHHHHhH
Confidence 4579999999999999988776 4 3899999996 79999999875
No 181
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=96.71 E-value=0.012 Score=47.88 Aligned_cols=61 Identities=26% Similarity=0.299 Sum_probs=47.7
Q ss_pred echhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC---eEEEEecCChHHHHHHHHHH
Q 028514 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 51 ~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~---~V~~tD~~~~~~~l~~~~~n 113 (208)
+-|+|-.||+-+...-..-+|+-|||||.|||++.-.+.++|. +++++++++ +-...+.+.
T Consensus 29 I~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~--dF~~~L~~~ 92 (194)
T COG3963 29 ILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSP--DFVCHLNQL 92 (194)
T ss_pred ecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH--HHHHHHHHh
Confidence 4566777777777655444788999999999999998888875 699999996 577766654
No 182
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.70 E-value=0.00081 Score=56.48 Aligned_cols=46 Identities=22% Similarity=0.134 Sum_probs=36.5
Q ss_pred eEEEeccCCChHHHHH-hhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 73 NVVELGAGTSLPGLVA-AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~-a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.+||+|||||..--+. .+.+..|+++|-++ .|.+.+.+.++.|...
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~--~mee~~~ks~~E~k~~ 125 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNE--KMEEIADKSAAEKKPL 125 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcH--HHHHHHHHHHhhccCc
Confidence 5899999999876544 34677899999986 6999999988877543
No 183
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=96.69 E-value=0.0047 Score=53.06 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=42.4
Q ss_pred CCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+-++|||+|+++|..++.+|.. +.+|+.+|.++ +..+.+++|++..++.
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~--~~~~~Ar~~~~~ag~~ 130 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINR--ENYELGLPVIQKAGVA 130 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCC
Confidence 4579999999999999988864 45899999995 7899999999988865
No 184
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.66 E-value=0.0042 Score=53.35 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=45.5
Q ss_pred HHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHH
Q 028514 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 57 ~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
-+++-+......-++..|||+|+|+|.++-.+++.+.+|++++.++ .+++.+++...
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~--~~~~~L~~~~~ 73 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDP--DLAKHLKERFA 73 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSH--HHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcH--hHHHHHHHHhh
Confidence 3444444443333678999999999999999999999999999996 69999988655
No 185
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.66 E-value=0.0027 Score=58.58 Aligned_cols=46 Identities=24% Similarity=0.446 Sum_probs=41.9
Q ss_pred eEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
-|||+|+|||++|+.+++.|+ .|++.+.-. -|.++|++.+..|+.+
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~Evfk--PM~d~arkI~~kng~S 115 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFK--PMVDLARKIMHKNGMS 115 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhc--hHHHHHHHHHhcCCCc
Confidence 589999999999999999999 699998876 4999999999999876
No 186
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.014 Score=52.42 Aligned_cols=61 Identities=18% Similarity=0.102 Sum_probs=50.7
Q ss_pred HHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 58 La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
||..+.+....-+|..|||==||||-+-+.+...|++|+++|++. .|++-++.|++.-++.
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~--~mv~gak~Nl~~y~i~ 245 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDE--RMVRGAKINLEYYGIE 245 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHH--HHHhhhhhhhhhhCcC
Confidence 445444443444788999999999999999999999999999995 7999999999887654
No 187
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.011 Score=50.52 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=51.6
Q ss_pred eeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHH
Q 028514 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 49 ~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~ 111 (208)
..+-.+++-|...+....-.++|+++||+|+-||=+.-++.+.|| +|+++|.... ++-.-++
T Consensus 58 ~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~-Ql~~kLR 120 (245)
T COG1189 58 PYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG-QLHWKLR 120 (245)
T ss_pred CccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC-ccCHhHh
Confidence 346678999999998877788999999999999999999999998 7999999864 3333443
No 188
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.35 E-value=0.017 Score=47.47 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=33.3
Q ss_pred eEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
+++|+|+|.|++|+.+|-... +|+++|-.. .=+..++.-+..-++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~--KK~~FL~~~~~~L~L 97 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVG--KKVAFLKEVVRELGL 97 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSH--HHHHHHHHHHHHHT-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCc--hHHHHHHHHHHHhCC
Confidence 799999999999998877654 799999985 456666655544333
No 189
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.35 E-value=0.0049 Score=52.93 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=40.4
Q ss_pred CCCCCCeEEEeccCCChHHHHHhhc-CC-eEEEEecCChHHHHHHHHHHHH
Q 028514 67 YRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 67 ~~~~~~~vLELG~G~Gl~sl~~a~~-g~-~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
.-|.++.+||+||-+|.+++.+|+. |+ .|+++|+++ .++..|++|+.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~--~LI~~Ark~~r 103 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDP--VLIQRARKEIR 103 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccH--HHHHHHHHhcc
Confidence 4567789999999999999998885 55 699999996 69999999874
No 190
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=96.12 E-value=0.013 Score=50.57 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=36.7
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
+.++||+||||+|..+..+++.. .+|+++|+++ ++++.++++..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~--~vi~~a~~~~~ 117 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE--KVIELSKKFLP 117 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH--HHHHHHHHHhH
Confidence 34699999999999888777664 4899999996 79999998864
No 191
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.10 E-value=0.012 Score=52.95 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=34.0
Q ss_pred CCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHH
Q 028514 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~ 110 (208)
.+|+++|||||++|-.+-.+++.|++|+++|..+ |-+.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~---l~~~L 248 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP---MAQSL 248 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh---cCHhh
Confidence 4788999999999999999999999999999774 55444
No 192
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=96.02 E-value=0.0067 Score=52.55 Aligned_cols=55 Identities=29% Similarity=0.343 Sum_probs=45.7
Q ss_pred CCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEe
Q 028514 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTD 99 (208)
Q Consensus 45 ~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD 99 (208)
..+|..+|+++..|.+++.+++..+.++++.++|||+++.++.+++...-|...+
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~ 119 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLD 119 (262)
T ss_pred HHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcccceecCC
Confidence 4689999999999999999988877889999999999999977777664343333
No 193
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.95 E-value=0.022 Score=47.66 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=34.5
Q ss_pred eEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
+|||||||||--+...|+.-. .-.-+|++. ..+..++..+...++
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~--~~~~sI~a~~~~~~~ 74 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDD--NLRPSIRAWIAEAGL 74 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCCh--HHHhhHHHHHHhcCC
Confidence 699999999999998888765 456788886 466777776665443
No 194
>PRK03612 spermidine synthase; Provisional
Probab=95.86 E-value=0.014 Score=55.22 Aligned_cols=43 Identities=26% Similarity=0.186 Sum_probs=37.1
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
+.++||++|||+|.....+++.. .+|+++|+++ ++++.+++|.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~--~vi~~ar~~~ 341 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDP--AMTELARTSP 341 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCH--HHHHHHHhCC
Confidence 45799999999999998887765 4899999996 7999999853
No 195
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.73 E-value=0.025 Score=50.61 Aligned_cols=62 Identities=21% Similarity=0.217 Sum_probs=43.8
Q ss_pred echhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC-CeEEEEecCChHHHHHHHHHHH
Q 028514 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 51 ~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g-~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
-|--++++..|+......-++.+|||||||-|-=-.-..+.+ ..++++|++. +.++.|++-.
T Consensus 43 NwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~--~si~ea~~Ry 105 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISE--ESIEEARERY 105 (331)
T ss_dssp HHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCH--HHHHHHHHHH
Confidence 688999999998754333367799999999665444344444 4899999996 6888888766
No 196
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.69 E-value=0.086 Score=45.17 Aligned_cols=124 Identities=19% Similarity=0.310 Sum_probs=73.9
Q ss_pred CCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhcCCC--
Q 028514 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-- 120 (208)
Q Consensus 45 ~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~-- 120 (208)
...+...++.++.=|.|+.++. .+.||+||=+| --=+.||++|..+ ++|++.|+++ .+++.+++.++..++.
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~g-dL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDe--Rll~fI~~~a~~~gl~i~ 95 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAERG-DLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDE--RLLDFINRVAEEEGLPIE 95 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHTT--STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-H--HHHHHHHHHHHHHT--EE
T ss_pred cccccccHHHHHHHHHHHHhcC-cccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCH--HHHHHHHHHHHHcCCceE
Confidence 4567888999999999988754 46899999999 5567777776644 4899999996 7999999999887765
Q ss_pred ----------------CchHHHHHHHH-------H------hhcCCCeEEEEeecccc--hh--hhHHHHHhHcCCeEEE
Q 028514 121 ----------------SFDDLFATITY-------L------LQSSPGSVFITTYHNRS--GH--HLIEFLMVKWGLKCVK 167 (208)
Q Consensus 121 ----------------~fD~il~t~~~-------l------l~~~~~~~~~~~~~~r~--~~--~~i~~~~~~~g~~~~~ 167 (208)
.||.++....+ + ..+.++...+.++..+. .. ..+..+.-..|+-+..
T Consensus 96 ~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 96 AVHYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp EE---TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEE
T ss_pred EEEecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHH
Confidence 67765542221 1 11345545565665543 22 2244455689999999
Q ss_pred EecCC
Q 028514 168 LVDGF 172 (208)
Q Consensus 168 l~~~~ 172 (208)
++.+|
T Consensus 176 ii~~F 180 (243)
T PF01861_consen 176 IIPDF 180 (243)
T ss_dssp EEEEE
T ss_pred HHhhh
Confidence 97776
No 197
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.69 E-value=0.018 Score=49.40 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=35.8
Q ss_pred eEEEeccCCChHHHHHhhcC----CeEEEEecCChHHHHHHHHHHHHhc
Q 028514 73 NVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMN 117 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~g----~~V~~tD~~~~~~~l~~~~~n~~~n 117 (208)
+|||+|||.|-....+.+-. ..|.+.|.++ .+++..+.|...+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp--~Ai~~vk~~~~~~ 120 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP--RAIELVKKSSGYD 120 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCCh--HHHHHHHhccccc
Confidence 69999999999988777654 3699999996 6999999886544
No 198
>PRK01581 speE spermidine synthase; Validated
Probab=95.58 E-value=0.02 Score=51.98 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=34.9
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~ 112 (208)
..++||++|||+|.....+++.. .+|+++|+++ +|++.+++
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp--eVIelAr~ 192 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG--SMINMARN 192 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH--HHHHHHHh
Confidence 45799999999999877777765 4899999996 79999996
No 199
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.58 E-value=0.029 Score=46.31 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=37.3
Q ss_pred CeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
..+||+|||.|-.-+.+|+... .++++|+.. ..+..+...+...++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~--~~v~~a~~~~~~~~l~ 67 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRK--KRVAKALRKAEKRGLK 67 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-H--HHHHHHHHHHHHHTTS
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecch--HHHHHHHHHHHhhccc
Confidence 3799999999999999888765 799999996 5888888877776665
No 200
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.56 E-value=0.036 Score=46.27 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=39.9
Q ss_pred EEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 74 VVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 74 vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
|+|+||--|.+++.+.+.|. +|+++|+++ .-++.|++|++.+++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~--gpL~~A~~~i~~~~l~ 47 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINP--GPLEKAKENIAKYGLE 47 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSH--HHHHHHHHHHHHTT-T
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCc
Confidence 68999999999999999997 799999996 6999999999998865
No 201
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=95.47 E-value=0.038 Score=48.70 Aligned_cols=45 Identities=7% Similarity=-0.050 Sum_probs=38.6
Q ss_pred CCCeEEEeccCCChHHHHHhhcC---CeEEEEecCChHHHHHHHHHHHHh
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g---~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
++..+||.+||.|--+..+++.. .+|+++|.++ ++++.+++++..
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~--~al~~ak~~L~~ 66 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP--DAIAAAKDRLKP 66 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH--HHHHHHHHhhcc
Confidence 46689999999999999888764 5899999995 799999987654
No 202
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.40 E-value=0.044 Score=43.99 Aligned_cols=50 Identities=22% Similarity=0.190 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHhcc-CCC-CCCeEEEeccCCChHHHHHhhcC---CeEEEEecCC
Q 028514 53 PCSVILAEYVWQQR-YRF-SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN 102 (208)
Q Consensus 53 ~as~~La~fl~~~~-~~~-~~~~vLELG~G~Gl~sl~~a~~g---~~V~~tD~~~ 102 (208)
.|+..|.+...... -.. .+.+||||||++|-.+-++++.+ .+|+++|+.+
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~ 58 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP 58 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence 46677777666544 112 34799999999999999999988 5899999997
No 203
>PLN02366 spermidine synthase
Probab=95.37 E-value=0.036 Score=49.08 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=37.5
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
+.++||++|||.|.....+++.. .+|+++|+++ ++++.+++...
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~--~Vi~~ar~~f~ 136 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK--MVIDVSKKFFP 136 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhhh
Confidence 45799999999999998888864 3799999995 79999998764
No 204
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.35 E-value=0.017 Score=53.16 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=67.3
Q ss_pred eEEEEecCCCCCCceEEEEeccCc---CCcceeechhHHHHHHHHHhccCCC-CCCeEEEeccCCChHHHHHhhcCCeEE
Q 028514 21 VSQHYFVDESDKPSFSIAIIENMK---EEYGLFVWPCSVILAEYVWQQRYRF-SGANVVELGAGTSLPGLVAAKVGSNVT 96 (208)
Q Consensus 21 ~~~~~f~~~~~~~~~~v~i~~~~~---~~~G~~~W~as~~La~fl~~~~~~~-~~~~vLELG~G~Gl~sl~~a~~g~~V~ 96 (208)
.|.+.+.-..+++.+....++.-- .++|-.-|. +.+..+.-.-.. .| .|..|-|+=||.|-.++.+++.++.|+
T Consensus 198 yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWn-sRL~~Eherlsg-~fk~gevv~D~FaGvGPfa~Pa~kK~crV~ 275 (495)
T KOG2078|consen 198 YRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWN-SRLSHEHERLSG-LFKPGEVVCDVFAGVGPFALPAAKKGCRVY 275 (495)
T ss_pred hcccCceEecCCCceEEEEecCCeeEEEecceEEee-ccchhHHHHHhh-ccCCcchhhhhhcCcCccccchhhcCcEEE
Confidence 344444333344556666666432 245556698 444444322111 22 466788999999999999999999999
Q ss_pred EEecCChHHHHHHHHHHHHhcCCC
Q 028514 97 LTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 97 ~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+-|+++ ++++.++.|+..|.+.
T Consensus 276 aNDLNp--esik~Lk~ni~lNkv~ 297 (495)
T KOG2078|consen 276 ANDLNP--ESIKWLKANIKLNKVD 297 (495)
T ss_pred ecCCCH--HHHHHHHHhccccccc
Confidence 999995 8999999999999987
No 205
>PRK10742 putative methyltransferase; Provisional
Probab=95.25 E-value=0.049 Score=46.92 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=39.2
Q ss_pred eEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHh
Q 028514 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
+|||+-||+|..|+.+|..|++|++++.++ .+...++.|++.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p--~vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNP--VVAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHH
Confidence 899999999999999999999999999996 688899998876
No 206
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.10 E-value=0.027 Score=45.74 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=39.1
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCe-----------EEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSN-----------VTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~-----------V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++..+||--||+|-+.+-+|..+.. +++.|++. ++++.+++|+...++.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~--~~v~~a~~N~~~ag~~ 87 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDP--KAVRGARENLKAAGVE 87 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSH--HHHHHHHHHHHHTT-C
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCH--HHHHHHHHHHHhcccC
Confidence 4678999999999999988776543 77999995 7999999999987775
No 207
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.09 E-value=0.057 Score=47.09 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=43.5
Q ss_pred CcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhh---------cCCeEEEEecCChHHHHHHHHHHHHh
Q 028514 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK---------VGSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 46 ~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~---------~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
..|...=|. .+++++......-++.+|+|-.||+|-+-+.+.. ...++++.|+++ .++..++.|+..
T Consensus 24 ~~G~~~TP~--~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~--~~~~la~~nl~l 99 (311)
T PF02384_consen 24 KLGQFYTPR--EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDP--EAVALAKLNLLL 99 (311)
T ss_dssp SCGGC---H--HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-H--HHHHHHHHHHHH
T ss_pred ccceeehHH--HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcH--HHHHHHHhhhhh
Confidence 344444443 2344544433333567899999999999887765 345899999996 688888888765
Q ss_pred cC
Q 028514 117 NK 118 (208)
Q Consensus 117 n~ 118 (208)
++
T Consensus 100 ~~ 101 (311)
T PF02384_consen 100 HG 101 (311)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 208
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=95.03 E-value=0.28 Score=45.95 Aligned_cols=65 Identities=9% Similarity=0.088 Sum_probs=47.6
Q ss_pred chhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc-C--CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 52 W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
=++|.+.+..+...+. +|.+|||++||.|-=+..+|.. + ..|++.|++. .-+..+++|++.-++.
T Consensus 97 d~sS~l~~~~L~~~~~--pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~--~R~~~L~~nl~r~G~~ 164 (470)
T PRK11933 97 EASSMLPVAALFADDN--APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSA--SRVKVLHANISRCGVS 164 (470)
T ss_pred CHHHHHHHHHhccCCC--CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCC
Confidence 3455555565533222 5779999999999999877664 2 3799999996 5889999999876654
No 209
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=94.95 E-value=0.19 Score=42.70 Aligned_cols=46 Identities=17% Similarity=0.012 Sum_probs=37.8
Q ss_pred CeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
..+||+|||.|-.-+.+|+... .++++++.. ..+..|.+.+...++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~--~~v~~~l~k~~~~~l 97 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRV--PGVAKALKKIKELGL 97 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEeh--HHHHHHHHHHHHcCC
Confidence 4799999999999999999987 589999987 466666666666666
No 210
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=94.81 E-value=0.045 Score=47.39 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=35.1
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
+..++||||||.|-+...++....+|++|+.+. .|...+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~--~Mr~rL~~ 134 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASP--PMRWRLSK 134 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCH--HHHHHHHh
Confidence 456899999999999999999999999999996 57666654
No 211
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.57 E-value=0.047 Score=41.22 Aligned_cols=31 Identities=23% Similarity=0.214 Sum_probs=27.4
Q ss_pred CeEEEeccCCChHHHHHhhcCCeEEEEecCC
Q 028514 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~ 102 (208)
...+|||||.|++--.+.+-|.+=.++|.-.
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 3689999999999999999999888888764
No 212
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=94.45 E-value=0.13 Score=43.25 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=31.7
Q ss_pred CCCeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~ 112 (208)
+.++|+|||+|.|..++.+++... ++++.|+. ++++.+++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp---~v~~~~~~ 141 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLP---EVIEQAKE 141 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-H---HHHCCHHH
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccH---hhhhcccc
Confidence 345899999999999998887654 78999984 68888888
No 213
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.40 E-value=0.065 Score=50.51 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=36.7
Q ss_pred CCCeEEEeccCCChHHHHHhhcC----------CeEEEEecCChHHHHHHHHHHHHhcC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG----------SNVTLTDDSNRIEVLKNMRRVCEMNK 118 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g----------~~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (208)
...+|||.+||+|.+.+.++... .++++.|+++ .+++.++.|+...+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~--~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDK--TLLKRAKKLLGEFA 87 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhH--HHHHHHHHHHhhcC
Confidence 34589999999999999776422 3689999996 79999988875543
No 214
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.067 Score=45.13 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=37.4
Q ss_pred CCCCeEEEeccCCChHHHHHhhc-CC---eEEEEecCChHHHHHHHHHHHHh
Q 028514 69 FSGANVVELGAGTSLPGLVAAKV-GS---NVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~-g~---~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
.+|.+.||+|+|+|.++-.++.+ |+ .++++|.- +++++..++|+..
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~--~eLVe~Sk~nl~k 130 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHI--PELVEYSKKNLDK 130 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhh--HHHHHHHHHHHHh
Confidence 37889999999999999988743 33 45788877 4899999999875
No 215
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.18 E-value=0.13 Score=50.41 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=41.4
Q ss_pred CCCeEEEeccCCChHHHHHhhc--------------------------------------------CCeEEEEecCChHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKV--------------------------------------------GSNVTLTDDSNRIE 105 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~--------------------------------------------g~~V~~tD~~~~~~ 105 (208)
.+..++|-+||+|-+.|.+|.. ..+++++|+++ +
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~--~ 267 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDP--R 267 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCH--H
Confidence 4578999999999999977652 12699999996 7
Q ss_pred HHHHHHHHHHhcCCC
Q 028514 106 VLKNMRRVCEMNKLN 120 (208)
Q Consensus 106 ~l~~~~~n~~~n~~~ 120 (208)
+++.+++|+..+++.
T Consensus 268 av~~A~~N~~~~g~~ 282 (702)
T PRK11783 268 VIQAARKNARRAGVA 282 (702)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999999886
No 216
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=94.06 E-value=0.13 Score=44.16 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=49.0
Q ss_pred CCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHH
Q 028514 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 45 ~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n 113 (208)
..-|.-.|..+..=+.-+.. -+|.+|||-..|.|..++.+++.|| +|+-++.+++ +++++..|
T Consensus 113 rt~~tdP~~Dt~~Kv~~V~~----~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~--VLeLa~lN 176 (287)
T COG2521 113 RTKGTDPLEDTLAKVELVKV----KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN--VLELAKLN 176 (287)
T ss_pred cccCcCcHHHHHhhhheecc----ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC--eEEeeccC
Confidence 55666678777544443321 1688999999999999999999999 9999999975 88887655
No 217
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=93.72 E-value=0.14 Score=46.70 Aligned_cols=48 Identities=31% Similarity=0.376 Sum_probs=39.3
Q ss_pred CCeEEEeccCCChHHHHHhhc--C-CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~--g-~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+-+|||-=||+|+=|+-.++- + .+|++-|+++ ++++.+++|++.|++.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~--~a~~~i~~N~~~N~~~ 100 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISP--EAVELIKRNLELNGLE 100 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-H--HHHHHHHHHHHHCT-S
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCH--HHHHHHHHhHhhcccc
Confidence 348999999999999988876 3 3799999996 7999999999999987
No 218
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.66 E-value=0.23 Score=43.08 Aligned_cols=47 Identities=26% Similarity=0.315 Sum_probs=34.3
Q ss_pred CCCCCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHH
Q 028514 67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 67 ~~~~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
..|+.++|||+|||+|....++... -.+++++|.++ .|++.++.-+.
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~--~~~~l~~~l~~ 79 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSP--EMLELAKRLLR 79 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCH--HHHHHHHHHHh
Confidence 4577789999999999765544332 23799999986 68887776543
No 219
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=93.59 E-value=1.1 Score=39.36 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=65.3
Q ss_pred CCCCCCeEEEeccCCChHHHHHhhcCC---eEEEEecCChHHHHHHHHHHHHhcCCC--------------------Cch
Q 028514 67 YRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN--------------------SFD 123 (208)
Q Consensus 67 ~~~~~~~vLELG~G~Gl~sl~~a~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~~--------------------~fD 123 (208)
+.-+|.+|||-|.|+|-+|.++|+.-+ +++-.|+.. .-.+.+.+-....++. .+|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~--~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aD 179 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHE--TRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKAD 179 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecH--HHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccc
Confidence 344788999999999999999998753 799999986 4566666666666655 233
Q ss_pred HHHH----------HHHHHhhcCCCeEEEEeecccchhhhHHHHHhHcCCeEEEEecC
Q 028514 124 DLFA----------TITYLLQSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCVKLVDG 171 (208)
Q Consensus 124 ~il~----------t~~~ll~~~~~~~~~~~~~~r~~~~~i~~~~~~~g~~~~~l~~~ 171 (208)
.|+- .....+...++..+..++.....++..+.+ .++|+.-.+.+|.
T Consensus 180 aVFLDlPaPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l-~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 180 AVFLDLPAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEAL-RSLGFIEIETVEV 236 (314)
T ss_pred eEEEcCCChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHH-HhCCCceEEEEEe
Confidence 3221 111234445555555555665556666654 6677755555554
No 220
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.36 E-value=0.34 Score=43.38 Aligned_cols=75 Identities=25% Similarity=0.341 Sum_probs=53.8
Q ss_pred ceEEEEeccCcCCcceeechhHHHHHHHHHhccCCCCCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHH
Q 028514 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 34 ~~~v~i~~~~~~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~ 110 (208)
.+-.++..+.+.+-|..+=| +.++....+....-.|.+||=+||| .|++.+.+|+ .|+ +|+++|+.+ .-++.|
T Consensus 135 dfc~KLPd~vs~eeGAl~eP--LsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~--~Rle~A 210 (354)
T KOG0024|consen 135 DFCYKLPDNVSFEEGALIEP--LSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA--NRLELA 210 (354)
T ss_pred HheeeCCCCCchhhcccccc--hhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH--HHHHHH
Confidence 34566666666666666555 3344444444444467899999999 6999998888 476 899999996 588888
Q ss_pred HH
Q 028514 111 RR 112 (208)
Q Consensus 111 ~~ 112 (208)
++
T Consensus 211 k~ 212 (354)
T KOG0024|consen 211 KK 212 (354)
T ss_pred HH
Confidence 87
No 221
>PLN02823 spermine synthase
Probab=92.91 E-value=0.2 Score=44.91 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=38.1
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHhc
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN 117 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~n 117 (208)
..++||.||+|.|.....+++.. .+|+++|+++ ++++.++++...+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~--~vv~lar~~~~~~ 150 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQ--EVVDFCRKHLTVN 150 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCH--HHHHHHHHhcccc
Confidence 35689999999999988777753 3799999996 7999999987654
No 222
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=92.55 E-value=0.25 Score=41.23 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=35.4
Q ss_pred CCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhh-cCC-eEEEEecCChHHHHHHHHH
Q 028514 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 45 ~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~~~ 112 (208)
..+|=..+..-..+.+-+ ..-++..++|||||.|-+-+.+|. .++ +++++++.+. ..+.++.
T Consensus 21 ~~YGEi~~~~~~~il~~~----~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~--~~~~a~~ 84 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDEL----NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE--LHDLAEE 84 (205)
T ss_dssp CCGGGCHHHHHHHHHHHT----T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH--HHHHHHH
T ss_pred cceeecCHHHHHHHHHHh----CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH--HHHHHHH
Confidence 345655555433333322 222467899999999999886654 565 5999999963 5544443
No 223
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.14 E-value=0.27 Score=41.64 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=42.9
Q ss_pred CCeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.++.|+||--|.+.+++.+.+. .+++.|+++. .++.+.+|+..|++.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~g--pl~~a~~~v~~~~l~ 66 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPG--PLESAIRNVKKNNLS 66 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccC--HHHHHHHHHHhcCCc
Confidence 45699999999999999998876 6999999974 999999999999887
No 224
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.48 E-value=0.49 Score=44.54 Aligned_cols=56 Identities=9% Similarity=-0.041 Sum_probs=39.8
Q ss_pred CCcceeechhHHHHHHHHHhccCC-CCC---CeEEEeccCCChHHHHHhhcCCeEEEEec
Q 028514 45 EEYGLFVWPCSVILAEYVWQQRYR-FSG---ANVVELGAGTSLPGLVAAKVGSNVTLTDD 100 (208)
Q Consensus 45 ~~~G~~~W~as~~La~fl~~~~~~-~~~---~~vLELG~G~Gl~sl~~a~~g~~V~~tD~ 100 (208)
+++|..+..++..-.++|.+.... ..+ +.+||+|||+|.+|..+...+-.+..+-.
T Consensus 88 Pgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~ 147 (506)
T PF03141_consen 88 PGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAP 147 (506)
T ss_pred CCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEccc
Confidence 667778888887777777665332 222 26899999999999998888865443333
No 225
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.35 E-value=0.5 Score=39.60 Aligned_cols=49 Identities=29% Similarity=0.154 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHhccCCC-CCCeEEEeccCCChHHHHHhhcCC---eEEEEecCC
Q 028514 53 PCSVILAEYVWQQRYRF-SGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSN 102 (208)
Q Consensus 53 ~as~~La~fl~~~~~~~-~~~~vLELG~G~Gl~sl~~a~~g~---~V~~tD~~~ 102 (208)
.|+.-|.+...+. ..| ++.+|+||||-.|-.+-.+++... .|+++|+.+
T Consensus 28 RAa~KL~el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 28 RAAYKLLELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred hHHHHHHHHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 3566666655554 334 567999999999999998887644 499999987
No 226
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.30 E-value=0.55 Score=36.40 Aligned_cols=96 Identities=22% Similarity=0.202 Sum_probs=51.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEeccCC-ChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC-CchHHHHHHHHHh
Q 028514 56 VILAEYVWQQRYRFSGANVVELGAGT-SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-SFDDLFATITYLL 133 (208)
Q Consensus 56 ~~La~fl~~~~~~~~~~~vLELG~G~-Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~fD~il~t~~~ll 133 (208)
..+|+|+.+.. ...+|+|+|-|- --++..++..|.+|++||.++. ++. .++. --|+|+.-...+.
T Consensus 2 ~~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---------~a~-~g~~~v~DDif~P~l~iY 68 (127)
T PF03686_consen 2 VDFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---------KAP-EGVNFVVDDIFNPNLEIY 68 (127)
T ss_dssp HHHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S--------------STTEE---SSS--HHHH
T ss_pred chHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---------ccc-cCcceeeecccCCCHHHh
Confidence 35788888643 234899999994 5567778889999999999972 333 4444 3466766433222
Q ss_pred hcCCCeEEEEeecccchhhhHHHHHhHcCCeEE
Q 028514 134 QSSPGSVFITTYHNRSGHHLIEFLMVKWGLKCV 166 (208)
Q Consensus 134 ~~~~~~~~~~~~~~r~~~~~i~~~~~~~g~~~~ 166 (208)
.+.-.+++-.-.......+-.++++-|-.+.
T Consensus 69 --~~a~lIYSiRPP~El~~~il~lA~~v~adli 99 (127)
T PF03686_consen 69 --EGADLIYSIRPPPELQPPILELAKKVGADLI 99 (127)
T ss_dssp --TTEEEEEEES--TTSHHHHHHHHHHHT-EEE
T ss_pred --cCCcEEEEeCCChHHhHHHHHHHHHhCCCEE
Confidence 2333444444444556667778888876664
No 227
>KOG2730 consensus Methylase [General function prediction only]
Probab=90.94 E-value=0.36 Score=41.19 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=44.4
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.-.+|+|.=||.|=..+-.|.+++.|+++|+++ .-+.++++|++.-++.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDP--ikIa~AkhNaeiYGI~ 142 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDP--VKIACARHNAEVYGVP 142 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccH--HHHHHHhccceeecCC
Confidence 335799999999999999999999999999996 7999999999998887
No 228
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.43 E-value=0.82 Score=41.72 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=42.5
Q ss_pred CCCeEEEeccCCChHHHHHhhcCC-----------------------------------------eEEEEecCChHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGS-----------------------------------------NVTLTDDSNRIEVLK 108 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~-----------------------------------------~V~~tD~~~~~~~l~ 108 (208)
.+..++|-=||+|-+.|-+|..+. .+++.|+++ .+++
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~--r~i~ 268 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP--RHIE 268 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH--HHHH
Confidence 446899999999999998887764 277999996 8999
Q ss_pred HHHHHHHhcCCC
Q 028514 109 NMRRVCEMNKLN 120 (208)
Q Consensus 109 ~~~~n~~~n~~~ 120 (208)
.|+.|+...++.
T Consensus 269 ~Ak~NA~~AGv~ 280 (381)
T COG0116 269 GAKANARAAGVG 280 (381)
T ss_pred HHHHHHHhcCCC
Confidence 999999998886
No 229
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=89.63 E-value=0.84 Score=43.11 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=36.7
Q ss_pred CCeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+..+||+|||.|-.-+.+|+... .++++|... ..+..+.+.+...++.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~--~~~~~~~~~~~~~~l~ 397 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYL--NGVANVLKLAGEQNIT 397 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeH--HHHHHHHHHHHHcCCC
Confidence 55799999999999999998876 689999986 3555555555555554
No 230
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=89.08 E-value=0.27 Score=43.61 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=54.9
Q ss_pred eechhHHHHHHH--HHhcc----CCCCCCeEEEeccCCChHHH-HHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 50 FVWPCSVILAEY--VWQQR----YRFSGANVVELGAGTSLPGL-VAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 50 ~~W~as~~La~f--l~~~~----~~~~~~~vLELG~G~Gl~sl-~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
..|++...+-.+ +.... -.-.+..|+||=||.|.+.+ ++..+|| .|++.|.++ ..++.+++|++.|+..
T Consensus 168 ~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp--~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 168 QIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNP--WSVEALRRNAEANNVM 244 (351)
T ss_pred EEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCH--HHHHHHHHHHHhcchH
Confidence 589988877665 22211 11245689999999999999 8889998 699999996 7999999999999875
No 231
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=88.99 E-value=0.9 Score=32.16 Aligned_cols=38 Identities=32% Similarity=0.403 Sum_probs=27.0
Q ss_pred EEEeccCCChHHHHHhhcC---CeEEEEecCChHHHHHHHHHHH
Q 028514 74 VVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 74 vLELG~G~Gl~sl~~a~~g---~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
++|+|||+|... .++... ..++++|.+. .++...+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~ 92 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSP--EMLALARARA 92 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCH--HHHHHHHhhh
Confidence 999999999976 333333 4788889886 5777654443
No 232
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=88.83 E-value=0.31 Score=41.08 Aligned_cols=35 Identities=14% Similarity=0.415 Sum_probs=20.7
Q ss_pred echh--HHHHHHHHHhccCCCCCCeEEEeccCCChHHHHH
Q 028514 51 VWPC--SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVA 88 (208)
Q Consensus 51 ~W~a--s~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~ 88 (208)
.||- --...+||...+ ++..|.|+|||-+.++-.+
T Consensus 54 ~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~ 90 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAV 90 (219)
T ss_dssp TSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH-
T ss_pred cCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhc
Confidence 5765 345566665443 3468999999999998554
No 233
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=88.74 E-value=0.69 Score=41.55 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=39.3
Q ss_pred chhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHH
Q 028514 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 52 W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n 113 (208)
|--|+++-.|+. ++..+++||||-|==-+-.-++|. +++++|+.. ..++.+++-
T Consensus 105 wIKs~LI~~y~~------~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAe--vSI~qa~~R 159 (389)
T KOG1975|consen 105 WIKSVLINLYTK------RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAE--VSINQARKR 159 (389)
T ss_pred HHHHHHHHHHhc------cccccceeccCCcccHhHhhhhcccceEeeehhh--ccHHHHHHH
Confidence 545555444443 356789999999877776667776 799999997 578888754
No 234
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=88.59 E-value=0.2 Score=42.33 Aligned_cols=115 Identities=22% Similarity=0.224 Sum_probs=63.1
Q ss_pred chhHHHHHHHHHhccCCCC----CCeEEEeccCCChHHHHHhhcCC-eEEEEecCCh-HHHH--HHHHHHHHhcCCCCch
Q 028514 52 WPCSVILAEYVWQQRYRFS----GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR-IEVL--KNMRRVCEMNKLNSFD 123 (208)
Q Consensus 52 W~as~~La~fl~~~~~~~~----~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~-~~~l--~~~~~n~~~n~~~~fD 123 (208)
=++|.+|.+|+.......+ ..++||+||=..-.. ++..+. +|+.+|++++ +.++ +.++.-+..+.-+.||
T Consensus 29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~--~s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~Fd 106 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNA--CSTSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFD 106 (219)
T ss_pred CchhHHHHHHhhhhccccccccccceEEeecccCCCCc--ccccCceeeEEeecCCCCCCceeeccccCCCCCCccccee
Confidence 4789999999987543222 248999998644433 223333 7999999975 2222 1233222222233777
Q ss_pred HHHHHHH------------------HHhhcCCC----eEEEE-eecc----c-chhhhHHHHHhHcCCeEEEE
Q 028514 124 DLFATIT------------------YLLQSSPG----SVFIT-TYHN----R-SGHHLIEFLMVKWGLKCVKL 168 (208)
Q Consensus 124 ~il~t~~------------------~ll~~~~~----~~~~~-~~~~----r-~~~~~i~~~~~~~g~~~~~l 168 (208)
.|..+++ .+|.+++. ..|++ +... | .....+..++...|+...+-
T Consensus 107 vIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 107 VISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred EEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 6543222 24544444 14443 3211 1 22334667788899876653
No 235
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=88.37 E-value=0.96 Score=40.33 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=32.2
Q ss_pred CCCeEEEeccCCChHHH-HHh---hc--CCeEEEEecCChHHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGL-VAA---KV--GSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl-~~a---~~--g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
++..+||||||.|.=.- ++. +. ....+.+|++. ++|+.+..++.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~--~~L~~a~~~L~ 125 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR--SELQRTLAELP 125 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH--HHHHHHHHhhh
Confidence 45589999999987533 221 22 34799999996 68888888887
No 236
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=87.73 E-value=1.1 Score=38.73 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=35.8
Q ss_pred eEEEeccCCChHHHHHhhcCCe-EEEEecCChHHHHHHHHHHHH
Q 028514 73 NVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~g~~-V~~tD~~~~~~~l~~~~~n~~ 115 (208)
+++||-||.|-+++.+.+.|.+ |.++|.++ .+++..++|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~--~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDK--SAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCH--HHHHHHHHhCC
Confidence 5899999999999999889885 78899996 68999988863
No 237
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=87.66 E-value=7.4 Score=35.07 Aligned_cols=62 Identities=21% Similarity=0.118 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC----CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 53 ~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g----~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.+|.+.+..+... +|.+|||+-|+.|-=+..+|.+. ..|++.|.+. .=+..++.|++.-++.
T Consensus 143 ~sS~l~a~~L~p~----pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~--~Rl~~l~~nl~RlG~~ 208 (355)
T COG0144 143 EASQLPALVLDPK----PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSP--KRLKRLRENLKRLGVR 208 (355)
T ss_pred HHHHHHHHHcCCC----CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCH--HHHHHHHHHHHHcCCC
Confidence 4566666555443 56899999999887777666543 4579999996 5889999998776554
No 238
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.38 E-value=2.2 Score=36.42 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=40.1
Q ss_pred CCCCeEEEeccCCChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
++.+++||||.=||..++..|.. +.+|++.|++. +..+...+-++..+..
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~--~~~~~~~~~~k~agv~ 124 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDA--DAYEIGLELVKLAGVD 124 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecCh--HHHHHhHHHHHhcccc
Confidence 46689999999999999987764 55899999997 5777777777766665
No 239
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=87.03 E-value=0.68 Score=40.06 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=32.8
Q ss_pred CCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHh
Q 028514 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 67 ~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
..++|.++||+|||.-+..++.|..-+ +|+++|+.+ .-++.+++.+..
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~--~N~~el~kWl~~ 101 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSE--QNREELEKWLRK 101 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSH--HHHHHHHHHHTT
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccH--hhHHHHHHHHCC
Confidence 455778999999999888776665554 799999996 466666665543
No 240
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=86.32 E-value=1.2 Score=38.43 Aligned_cols=57 Identities=14% Similarity=0.267 Sum_probs=43.7
Q ss_pred CeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC----------------CchHHHHHHHH
Q 028514 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN----------------SFDDLFATITY 131 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~----------------~fD~il~t~~~ 131 (208)
+.++|+|||.|.++-.+...|. +++.+|.+- .|++.++.. +-+.+. +||.|++++..
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~--~M~~s~~~~-qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSY--DMIKSCRDA-QDPSIETSYFVGDEEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecch--HHHHHhhcc-CCCceEEEEEecchhcccccccchhhhhhhhhh
Confidence 4789999999999988877776 799999995 688887653 112222 78999997665
No 241
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=85.91 E-value=2.8 Score=33.84 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=42.1
Q ss_pred eechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHH
Q 028514 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 50 ~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
+.-+=-+.|.+.+..... -+|..|||-=||+|-.++++.++|-+.+++|+++ +..+.|++
T Consensus 172 h~~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~--~y~~~a~~ 231 (231)
T PF01555_consen 172 HPTQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE--EYCEIAKK 231 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH--HHHHHHHH
T ss_pred eeecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCH--HHHHHhcC
Confidence 444556667776655322 2577999999999999999999999999999996 67777653
No 242
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=85.30 E-value=0.23 Score=42.06 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=34.5
Q ss_pred CeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHH
Q 028514 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
+++||||||-|-++..++-...+|.+|+++. .|...+++
T Consensus 114 ~~lLDlGAGdGeit~~m~p~feevyATElS~--tMr~rL~k 152 (288)
T KOG3987|consen 114 VTLLDLGAGDGEITLRMAPTFEEVYATELSW--TMRDRLKK 152 (288)
T ss_pred eeEEeccCCCcchhhhhcchHHHHHHHHhhH--HHHHHHhh
Confidence 5899999999999999988888899999995 68888775
No 243
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=84.58 E-value=2.7 Score=38.28 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=40.7
Q ss_pred CCeEEEeccCCChHHHHHhhc-CC-eEEEEecCChHHHHHHHHHHHHhcC
Q 028514 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNK 118 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~-g~-~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (208)
.++|+|-=||+|+=||-.|.- +. +|++-|+++ ++++.++.|+..|.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp--~Avelik~Nv~~N~ 100 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISP--KAVELIKENVRLNS 100 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCH--HHHHHHHHHHHhcC
Confidence 578999999999999987764 44 799999996 79999999999993
No 244
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=83.91 E-value=4 Score=35.58 Aligned_cols=32 Identities=25% Similarity=0.166 Sum_probs=30.0
Q ss_pred CCeEEEeccCCChHHHHHhhcCCeEEEEecCC
Q 028514 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~ 102 (208)
..+||-=|||.|.++.-+|++|..|.+.+.+-
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~ 88 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSY 88 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchH
Confidence 46899999999999999999999999999994
No 245
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=82.66 E-value=3.6 Score=37.84 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=27.2
Q ss_pred CeEEEeccCCChHHHHHhh-cCCeEEEEecCC
Q 028514 72 ANVVELGAGTSLPGLVAAK-VGSNVTLTDDSN 102 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~-~g~~V~~tD~~~ 102 (208)
+.++|+|+|-|.++-+++- .|..|.++|.+.
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 5799999999999998765 567999999996
No 246
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=82.64 E-value=2.2 Score=40.47 Aligned_cols=42 Identities=31% Similarity=0.417 Sum_probs=34.0
Q ss_pred CCCCeEEEeccC-CChHHHHHhh-cCCeEEEEecCChHHHHHHHHH
Q 028514 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
..+.+|+=+||| .|+.++.+|+ +|++|+++|.++ +.++.++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~--~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP--EVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHH
Confidence 357799999999 5999987665 689999999996 56776654
No 247
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=82.34 E-value=3 Score=36.11 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=27.0
Q ss_pred CCCeEEEeccCCChHHHHHhhcC-------CeEEEEecCC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g-------~~V~~tD~~~ 102 (208)
++..++|+|||.|.+|-.+++.- ..++++|...
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 45689999999999999887643 3789999975
No 248
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.21 E-value=30 Score=29.33 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=38.5
Q ss_pred ceeechh--HHHHHHHHHhcc--CCCCCCeEEEeccCCChHHHHHhh-cC-CeEEEEecCCh
Q 028514 48 GLFVWPC--SVILAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAK-VG-SNVTLTDDSNR 103 (208)
Q Consensus 48 G~~~W~a--s~~La~fl~~~~--~~~~~~~vLELG~G~Gl~sl~~a~-~g-~~V~~tD~~~~ 103 (208)
-.+.|+. |.+-|..+.... ..-+|.+||=|||-+|-.---.+- .| ..|+++++++.
T Consensus 50 eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R 111 (231)
T COG1889 50 EYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPR 111 (231)
T ss_pred ceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecch
Confidence 3789987 666666665432 222678999999998876554443 23 36999999974
No 249
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=81.75 E-value=10 Score=32.93 Aligned_cols=69 Identities=17% Similarity=0.129 Sum_probs=51.1
Q ss_pred cceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhc-C--CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 47 ~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~-g--~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.+.+++.|-.++..+... -+|.+|||+.|+.|-=+..+|.. + ..|++.|++. .-+..++.|+...+..
T Consensus 65 G~~~vQd~sS~l~~~~L~~---~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~--~Rl~~l~~~~~r~g~~ 136 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALDP---QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISP--KRLKRLKENLKRLGVF 136 (283)
T ss_dssp TSEEEHHHHHHHHHHHHTT---TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSH--HHHHHHHHHHHHTT-S
T ss_pred CcEEecccccccccccccc---cccccccccccCCCCceeeeeecccchhHHHHhccCH--HHHHHHHHHHHhcCCc
Confidence 4456788776666654432 25678999999999888876654 3 3899999996 6889999999887765
No 250
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=80.62 E-value=5.4 Score=33.99 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=32.0
Q ss_pred eEEEeccCCChHHHHHhhc-C---CeEEEEecCChHHHHHHHHHHHHhc
Q 028514 73 NVVELGAGTSLPGLVAAKV-G---SNVTLTDDSNRIEVLKNMRRVCEMN 117 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~-g---~~V~~tD~~~~~~~l~~~~~n~~~n 117 (208)
.+.|=.||.|.+--.+..+ + ..|+++|+++ ++++.+++|+.+-
T Consensus 54 tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~--~aL~lA~kNL~LL 100 (246)
T PF11599_consen 54 TLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDE--DALELARKNLSLL 100 (246)
T ss_dssp EEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-H--HHHHHHHHHHHCC
T ss_pred eeeccCCCccHHHHHHHHhhhHHHHhHhcccCCH--HHHHHHHHhhhhc
Confidence 7899999999766544332 2 2799999996 7999999998753
No 251
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.49 E-value=3.3 Score=31.78 Aligned_cols=94 Identities=19% Similarity=0.154 Sum_probs=51.1
Q ss_pred HHHHHHhccCCCCCCeEEEeccCC-ChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhcCCC-CchHHHHHHHHHhhc
Q 028514 58 LAEYVWQQRYRFSGANVVELGAGT-SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-SFDDLFATITYLLQS 135 (208)
Q Consensus 58 La~fl~~~~~~~~~~~vLELG~G~-Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~-~fD~il~t~~~ll~~ 135 (208)
+++|+..... + .+|+|+|.|- =-++-.+++.|.+|++||+++. ++. .++. --|+|+.-...+.
T Consensus 4 ~a~~iAre~~--~-gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---------~a~-~g~~~v~DDitnP~~~iY-- 68 (129)
T COG1255 4 VAEYIARENA--R-GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---------TAP-EGLRFVVDDITNPNISIY-- 68 (129)
T ss_pred HHHHHHHHhc--C-CcEEEEccchHHHHHHHHHHcCCcEEEEecccc---------cCc-ccceEEEccCCCccHHHh--
Confidence 4666664321 3 3799999984 2344467889999999999962 222 3332 2355655222221
Q ss_pred CCCeEEEEeecccchhhhHHHHHhHcCCeEE
Q 028514 136 SPGSVFITTYHNRSGHHLIEFLMVKWGLKCV 166 (208)
Q Consensus 136 ~~~~~~~~~~~~r~~~~~i~~~~~~~g~~~~ 166 (208)
.+...+++-.........+-.++++-|-.|-
T Consensus 69 ~~A~lIYSiRpppEl~~~ildva~aVga~l~ 99 (129)
T COG1255 69 EGADLIYSIRPPPELQSAILDVAKAVGAPLY 99 (129)
T ss_pred hCccceeecCCCHHHHHHHHHHHHhhCCCEE
Confidence 1222233322233334445556677776654
No 252
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=80.31 E-value=2.4 Score=36.53 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=40.8
Q ss_pred HHHHHHHHhccCCCCCC--eEEEeccCC-ChHHH-HHhhcCCeEEEEecCChHHHHHHHHHHHHhc-CCC
Q 028514 56 VILAEYVWQQRYRFSGA--NVVELGAGT-SLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLN 120 (208)
Q Consensus 56 ~~La~fl~~~~~~~~~~--~vLELG~G~-Gl~sl-~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n-~~~ 120 (208)
..|++.|........++ ++||+|.|. -+.-| -+-..|.+.+++|+++ ..++.|+.++..| +++
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~--~sl~sA~~ii~~N~~l~ 129 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDS--QSLSSAKAIISANPGLE 129 (292)
T ss_pred HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCH--HHHHHHHHHHHcCcchh
Confidence 34555555433333344 678887763 22222 2345677999999997 5999999999998 444
No 253
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=80.27 E-value=3.7 Score=34.99 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=36.0
Q ss_pred CCCeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHh
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
+.++||-||-|.|...-.+.+.. .+|+++|+++ .+++.+++-...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~--~Vv~~a~~~f~~ 122 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDP--EVVELARKYFPE 122 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-H--HHHHHHHHHTHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecCh--HHHHHHHHhchh
Confidence 46799999999999988887776 4899999996 799999886543
No 254
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=80.25 E-value=39 Score=30.07 Aligned_cols=48 Identities=21% Similarity=0.181 Sum_probs=38.0
Q ss_pred CCeEEEeccCCChHHHHH-hhcC---CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVA-AKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~-a~~g---~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.-+|||+-||.|.-=+-+ .+.. .+|.+.|+++ ..++..++-++.+++.
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~--~Nv~~g~~li~~~gL~ 187 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSP--INVEKGRALIAERGLE 187 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCH--HHHHHHHHHHHHcCCc
Confidence 348999999999886633 3332 2799999996 6899999999888876
No 255
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=80.03 E-value=4.6 Score=34.89 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=35.8
Q ss_pred CCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
..+|+|||||.=-+++..... ++.+++.|++. .+++.+..-+..-+..
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~--~~ve~l~~~l~~l~~~ 155 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDS--QLVEFLNAFLAVLGVP 155 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBH--HHHHHHHHHHHHTT-C
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCH--HHHHHHHHHHHhhCCC
Confidence 458999999998888865544 45899999996 6999998887766554
No 256
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=80.02 E-value=4.5 Score=35.49 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=21.9
Q ss_pred hcCCCeEEEEeecccchh-hhHHHHHhHcCCeEEEE
Q 028514 134 QSSPGSVFITTYHNRSGH-HLIEFLMVKWGLKCVKL 168 (208)
Q Consensus 134 ~~~~~~~~~~~~~~r~~~-~~i~~~~~~~g~~~~~l 168 (208)
.+.+|..+++--+.|-.+ ..+.......||...+.
T Consensus 254 Lk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 254 LKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred hccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh
Confidence 356677777766666322 22333458899988876
No 257
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.02 E-value=9.7 Score=33.72 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=46.7
Q ss_pred CCCCCCeEEEeccCCChHHH---HHhhcCCeEEEEecCCh--HHHHHHHHHH--H--HhcCCCCchHHHHHHHHHhhcCC
Q 028514 67 YRFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNR--IEVLKNMRRV--C--EMNKLNSFDDLFATITYLLQSSP 137 (208)
Q Consensus 67 ~~~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~~--~~~l~~~~~n--~--~~n~~~~fD~il~t~~~ll~~~~ 137 (208)
..++|+.||==|+|.|+--. -+|++|+++++.|++.. ++..+.++++ + -..++++.|+|.......-+.-+
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVG 113 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence 45688999999999998655 45889999999999985 3344444332 0 01122377788776665444333
No 258
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=79.70 E-value=2.9 Score=36.42 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=29.2
Q ss_pred CCeEEEeccCCCh----HHHHHhhcC-------CeEEEEecCChHHHHHHHHH
Q 028514 71 GANVVELGAGTSL----PGLVAAKVG-------SNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 71 ~~~vLELG~G~Gl----~sl~~a~~g-------~~V~~tD~~~~~~~l~~~~~ 112 (208)
.-+|+-.||+||- +++.+...+ .+|+|||++. .+|+.|+.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~--~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL--SVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH--HHHHHHhc
Confidence 3489999999994 333333322 3799999996 69998875
No 259
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.49 E-value=4.8 Score=35.90 Aligned_cols=41 Identities=37% Similarity=0.516 Sum_probs=33.0
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~~~ 112 (208)
.+.+|+=+||| .|++++.+|+ .|+ +|+++|.++ +-++.+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~--~Rl~~A~~ 211 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP--ERLELAKE 211 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH--HHHHHHHH
Confidence 44489999999 5999987776 465 799999996 68888877
No 260
>PRK13699 putative methylase; Provisional
Probab=79.22 E-value=9.9 Score=32.01 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=38.1
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
+|..|||-=||+|-.++++.+.|-+.+++|+++ +..+.+.+.++
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~--~y~~~~~~r~~ 206 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLE--QYHRAGQQRLA 206 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCH--HHHHHHHHHHH
Confidence 677999999999999999999999999999996 57777766554
No 261
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=78.46 E-value=11 Score=30.41 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=35.3
Q ss_pred echhHHHHHHHHHhccCCCCCCeEEEeccC--CCh-HHHHHhhcCCeEEEEecCC
Q 028514 51 VWPCSVILAEYVWQQRYRFSGANVVELGAG--TSL-PGLVAAKVGSNVTLTDDSN 102 (208)
Q Consensus 51 ~W~as~~La~fl~~~~~~~~~~~vLELG~G--~Gl-~sl~~a~~g~~V~~tD~~~ 102 (208)
+|.+++.+++.+ ...+.+++||=+|+| .|. +.-.+...|++|++++-..
T Consensus 27 ~~~a~v~l~~~~---~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 27 TPAGILELLKRY---GIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred hHHHHHHHHHHc---CCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 566666655544 345789999999999 377 4446667888999998874
No 262
>PRK11524 putative methyltransferase; Provisional
Probab=76.89 E-value=11 Score=32.63 Aligned_cols=57 Identities=21% Similarity=0.134 Sum_probs=44.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHH
Q 028514 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 56 ~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
+.|.+.+.... ..+|..|||-=||+|-.++++.++|-+.+++|+++ +-++.+++-+.
T Consensus 195 ~~L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~--~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINS--EYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCH--HHHHHHHHHHH
Confidence 44555444322 13678999999999999999999999999999996 68888877764
No 263
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=76.82 E-value=4.8 Score=36.29 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=31.8
Q ss_pred CCCCeEEEeccC-CChHHHHHhh-cCCeEEEEecCChHHHHHHHHHH
Q 028514 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~~n 113 (208)
-+|++|+=.|+| .|..++-+|+ +|++|+++|.++ +-++.+++-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~--~K~e~a~~l 209 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSE--EKLELAKKL 209 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCh--HHHHHHHHh
Confidence 368899888888 4555555566 899999999997 466666553
No 264
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.70 E-value=3.1 Score=33.60 Aligned_cols=46 Identities=20% Similarity=0.124 Sum_probs=37.5
Q ss_pred eEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+.+|||+|-|.+=+.+|+.|+ +.+++++++ -++...+..+-..+..
T Consensus 75 klvDlGSGDGRiVlaaar~g~~~a~GvELNp--wLVaysrl~a~R~g~~ 121 (199)
T KOG4058|consen 75 KLVDLGSGDGRIVLAAARCGLRPAVGVELNP--WLVAYSRLHAWRAGCA 121 (199)
T ss_pred cEEeccCCCceeehhhhhhCCCcCCceeccH--HHHHHHHHHHHHHhcc
Confidence 688999999999999999996 789999996 5777777666555544
No 265
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=76.01 E-value=13 Score=32.99 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=41.4
Q ss_pred CCCCCCeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 67 YRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 67 ~~~~~~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
.++.|+.|+-+| ---+.|+++|..|. +|.++|+++ .+++.+.+.++.-++.
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDE--Rli~fi~k~aee~g~~ 201 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDE--RLIKFIEKVAEELGYN 201 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechH--HHHHHHHHHHHHhCcc
Confidence 345788999999 78899998888774 799999996 6999998887765544
No 266
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=75.79 E-value=4.8 Score=35.37 Aligned_cols=40 Identities=25% Similarity=0.162 Sum_probs=29.4
Q ss_pred CeEEEeccCCChH----HHHHhhc------CCeEEEEecCChHHHHHHHHHH
Q 028514 72 ANVVELGAGTSLP----GLVAAKV------GSNVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 72 ~~vLELG~G~Gl~----sl~~a~~------g~~V~~tD~~~~~~~l~~~~~n 113 (208)
-+|+-.||.||-= ++.+... ..+|++||++. .+++.|++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~--~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDT--EVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCH--HHHHHHHhC
Confidence 4899999999953 3333322 23799999996 699999865
No 267
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=75.62 E-value=8.1 Score=32.74 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=23.1
Q ss_pred CeEEEeccCCChHHHHHhh----c------CCeEEEEecCCh
Q 028514 72 ANVVELGAGTSLPGLVAAK----V------GSNVTLTDDSNR 103 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~----~------g~~V~~tD~~~~ 103 (208)
-+|+|+|+|.|.++.-+.. . ..++++++.++.
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~ 61 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY 61 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH
Confidence 5899999999999985433 1 237999999983
No 268
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=73.53 E-value=5.1 Score=33.12 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=26.8
Q ss_pred CeEEEeccCCChH----HHHHhh-----cC--CeEEEEecCChHHHHHHHHHH
Q 028514 72 ANVVELGAGTSLP----GLVAAK-----VG--SNVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 72 ~~vLELG~G~Gl~----sl~~a~-----~g--~~V~~tD~~~~~~~l~~~~~n 113 (208)
-+|+-.||++|-= ++.+.. .+ .+|++||++. .+++.|++-
T Consensus 33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~--~~L~~Ar~G 83 (196)
T PF01739_consen 33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP--SALEKARAG 83 (196)
T ss_dssp EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H--HHHHHHHHT
T ss_pred eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH--HHHHHHHhC
Confidence 4899999999953 333333 12 3799999996 689888753
No 269
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=73.04 E-value=8.2 Score=35.69 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=27.8
Q ss_pred CCCCCCeEEEeccC-CChHHHHHh-hcCCeEEEEecCC
Q 028514 67 YRFSGANVVELGAG-TSLPGLVAA-KVGSNVTLTDDSN 102 (208)
Q Consensus 67 ~~~~~~~vLELG~G-~Gl~sl~~a-~~g~~V~~tD~~~ 102 (208)
..+.|++|+=+||| .|+.....+ ..|++|+++|.++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 34689999999999 466665444 4688999999986
No 270
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=72.46 E-value=6.9 Score=35.77 Aligned_cols=52 Identities=19% Similarity=0.128 Sum_probs=33.8
Q ss_pred CCcceeechhHHHHHHHHHhccCCCCCCeEEEeccC-CChHHH-HHhhcCCeEEEEecCC
Q 028514 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 45 ~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~ 102 (208)
.++|.-.|++-.--.. -.+.||.++-.|-| +|--.- .+...|++|++|+.+|
T Consensus 189 YGtgqS~~DgI~RaTn------~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDP 242 (420)
T COG0499 189 YGTGQSLLDGILRATN------VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP 242 (420)
T ss_pred cccchhHHHHHHhhhc------eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCc
Confidence 4566667777533322 23478988877766 444332 3344789999999998
No 271
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=72.18 E-value=16 Score=32.48 Aligned_cols=45 Identities=4% Similarity=-0.060 Sum_probs=37.4
Q ss_pred CCCeEEEeccCCChHHHHHhhc--CCeEEEEecCChHHHHHHHHHHHHh
Q 028514 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~--g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
++..++|--+|.|--+.++++. ..+|++.|.++ ++++.+++.++.
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~--~Al~~ak~~L~~ 66 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDP--QAIAFAKERLSD 66 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHhh
Confidence 5678999999999999987765 25899999995 799999887654
No 272
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=71.91 E-value=14 Score=33.71 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=37.0
Q ss_pred HHHHHHHHHhccCCC---CCCeEEEeccCCChHHHHHhh----c------CCeEEEEecCChHHHHHHHHHHH
Q 028514 55 SVILAEYVWQQRYRF---SGANVVELGAGTSLPGLVAAK----V------GSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 55 s~~La~fl~~~~~~~---~~~~vLELG~G~Gl~sl~~a~----~------g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
+..|+.|+.+....+ ....++|+|+|.|.+.-=+.+ . ..++.+++.++ -+...+++.
T Consensus 59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~---~L~~~Qk~~ 128 (370)
T COG1565 59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP---ELRARQKET 128 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH---HHHHHHHHH
Confidence 567777776643222 234799999999999874332 1 34799999996 344444443
No 273
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.20 E-value=13 Score=34.38 Aligned_cols=50 Identities=24% Similarity=0.405 Sum_probs=31.8
Q ss_pred CCCCCeEEEeccC-CChHHH-HHhhcCCeEEEEecCChHHHHHHHHHHHHhcC
Q 028514 68 RFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (208)
Q Consensus 68 ~~~~~~vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n~ 118 (208)
.+++++|+=+|+| +|+... .+++.|++|+++|..+. +....+.+.++..+
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-~~~~~~~~~l~~~g 64 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-ERHRALAAILEALG 64 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-hhhHHHHHHHHHcC
Confidence 4567899999988 555433 45567999999997752 33344334444433
No 274
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=70.77 E-value=10 Score=33.24 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=37.1
Q ss_pred CeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHH
Q 028514 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
++||-+|-|.|-..-.+.+.. .+++++|+++ .+++.+++-..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~--~Vi~~ar~~l~ 121 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDP--AVIELARKYLP 121 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCH--HHHHHHHHhcc
Confidence 699999999999999999887 4899999996 69999998654
No 275
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=70.51 E-value=13 Score=34.15 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=31.3
Q ss_pred cCCCCCCeEEEeccCCChHHHHHhhcCC---eEEEEecCCh-HHHHHHHHHHH
Q 028514 66 RYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNR-IEVLKNMRRVC 114 (208)
Q Consensus 66 ~~~~~~~~vLELG~G~Gl~sl~~a~~g~---~V~~tD~~~~-~~~l~~~~~n~ 114 (208)
...|..++|||+|+|.|....++-..-. .+++++.++. -++..-+.+|+
T Consensus 109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv 161 (484)
T COG5459 109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV 161 (484)
T ss_pred CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc
Confidence 3577888999999998876544433322 5788888763 23344444444
No 276
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=70.27 E-value=5.5 Score=33.70 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=32.9
Q ss_pred CCCeEEEeccCCChHHH-HHhhcCCeEEEEecCChHHHHHHHHHHHHh
Q 028514 70 SGANVVELGAGTSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl-~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
...++||.|||.|.++- ++.....+|-++|..+ ..++.|++.+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~--~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVE--KFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-H--HHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCH--HHHHHHHHHhcc
Confidence 34589999999999997 4566666899999995 688988876554
No 277
>PRK00536 speE spermidine synthase; Provisional
Probab=69.96 E-value=10 Score=32.92 Aligned_cols=41 Identities=10% Similarity=0.030 Sum_probs=36.7
Q ss_pred CCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
+-++||=+|-|-|...--+.|...+|+++|+++ ++++.+++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~--~Vv~~~k~ 112 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE--KILDSFIS 112 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH--HHHHHHHH
Confidence 347999999999999998888877999999996 79999998
No 278
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=69.62 E-value=6.7 Score=32.86 Aligned_cols=32 Identities=22% Similarity=0.049 Sum_probs=24.6
Q ss_pred CCCeEEEeccCCChHHHHHhhcC-C--eEEEEecC
Q 028514 70 SGANVVELGAGTSLPGLVAAKVG-S--NVTLTDDS 101 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g-~--~V~~tD~~ 101 (208)
++.+|||+||-.|..+-.+-+.- . .|.++|+-
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 56799999999999999876653 2 46666653
No 279
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=69.56 E-value=8.1 Score=33.95 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=38.9
Q ss_pred HHHHHHHHhc-----cCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCC
Q 028514 56 VILAEYVWQQ-----RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (208)
Q Consensus 56 ~~La~fl~~~-----~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~ 102 (208)
..|..||... .+..+++.+.||=+|||++|-..-+.|.+|++-|+..
T Consensus 8 ~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ 59 (330)
T COG3392 8 YKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY 59 (330)
T ss_pred HHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence 4566777553 3455788999999999999999999999999999975
No 280
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=69.15 E-value=10 Score=32.46 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=35.5
Q ss_pred eEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHH
Q 028514 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
+++||=||.|-+++.+.+.|. -|.+.|+++ .+.+..+.|..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~--~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDP--DACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSH--HHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCH--HHHHhhhhccc
Confidence 689999999999999999997 489999996 69999998874
No 281
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=69.03 E-value=3.4 Score=37.90 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=24.0
Q ss_pred CCeEEEeccCCChHHHHHhh---------c---C-----CeEEEEecCCh
Q 028514 71 GANVVELGAGTSLPGLVAAK---------V---G-----SNVTLTDDSNR 103 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~---------~---g-----~~V~~tD~~~~ 103 (208)
.-+|+|||||+|..++.+.. + + .+|...|+..+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~N 113 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSN 113 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCC
Confidence 34799999999998886521 1 1 26888888765
No 282
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=67.91 E-value=6.7 Score=36.10 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=36.4
Q ss_pred CeEEEeccCCChHHHHHhhcC--CeEEEEecCChHHHHHHHHHHHHh
Q 028514 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g--~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
.+||-||-|-|+..--+.+.- .+|+.+|+++ +|++.+++|...
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP--~miela~~~~vl 335 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDP--RMIELASHATVL 335 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCH--HHHHHhhhhhHh
Confidence 479999999999988887765 3899999995 799999987643
No 283
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=66.76 E-value=8.2 Score=31.40 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=20.0
Q ss_pred EEEeccC-CChHHH-HHhhcCCeEEEEecCChHHHHHHHH
Q 028514 74 VVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 74 vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~~~~~l~~~~ 111 (208)
|-=+|.| .|++.. .+|..|.+|++.|.++ +.++.++
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~--~~v~~l~ 40 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDE--EKVEALN 40 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-H--HHHHHHH
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCCh--HHHHHHh
Confidence 3345555 343332 4577899999999996 5555543
No 284
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=66.70 E-value=21 Score=31.13 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=28.1
Q ss_pred CCCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHHHH
Q 028514 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~~~ 112 (208)
.++.+||=.||| .|+..+.+|+ .|+ +|+++|.++ +-++.+++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~--~~~~~a~~ 212 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP--RSLSLARE 212 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH--HHHHHHHH
Confidence 367888888876 3555554454 577 699999885 45666553
No 285
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=66.12 E-value=8.7 Score=32.83 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=26.0
Q ss_pred eEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHH
Q 028514 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~ 111 (208)
+|||.-||.|.=++.+|..|++|++++.++ -+...++
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErsp--via~Ll~ 114 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCKVTGLERSP--VIAALLK 114 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT--EEEEE--H--HHHHHHH
T ss_pred EEEECCCcchHHHHHHHccCCeEEEEECCH--HHHHHHH
Confidence 899999999999999999999999999996 3444444
No 286
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=65.79 E-value=19 Score=31.56 Aligned_cols=41 Identities=15% Similarity=0.070 Sum_probs=27.8
Q ss_pred CCCeEEEeccC-CChHHHHHhh--cC-CeEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK--VG-SNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~--~g-~~V~~tD~~~~~~~l~~~~~ 112 (208)
+|.+||=+||| .|+..+.+++ .| ++|+++|.++ +-++.++.
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~--~k~~~a~~ 207 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ--EKLDLFSF 207 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH--hHHHHHhh
Confidence 57889999987 4666655454 34 4899999885 35555543
No 287
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=65.54 E-value=22 Score=30.14 Aligned_cols=41 Identities=29% Similarity=0.371 Sum_probs=25.8
Q ss_pred CCCCeEEEeccC-CChHHHHHhh-cCCe-EEEEecCChHHHHHHHH
Q 028514 69 FSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl~~a~-~g~~-V~~tD~~~~~~~l~~~~ 111 (208)
.++.+||=.|+| .|+..+.+|+ .|++ |+++|.++ +-++.++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~--~r~~~a~ 162 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP--DRRELAL 162 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHH
Confidence 367888888876 3555444444 5775 89998775 3444443
No 288
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=64.51 E-value=13 Score=31.08 Aligned_cols=46 Identities=22% Similarity=0.127 Sum_probs=30.0
Q ss_pred HHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCCh
Q 028514 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR 103 (208)
Q Consensus 58 La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~ 103 (208)
|+.+|.+........+++|+=||+|.+++.+.+.+..|++-|++..
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~ 53 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPD 53 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHH
Confidence 4555555432224679999999999999988778889999999963
No 289
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=64.46 E-value=18 Score=32.36 Aligned_cols=43 Identities=30% Similarity=0.334 Sum_probs=30.7
Q ss_pred CCCCeEEEeccCC-ChHHHHHhh-cCC-eEEEEecCChHHHHHHHHHH
Q 028514 69 FSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 69 ~~~~~vLELG~G~-Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~~~n 113 (208)
.++.+||.+|||. |...+.+|+ .|. +|+++|.++ +.++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~--~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVP--ERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHc
Confidence 3577899999875 666665555 465 599999885 577776653
No 290
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=64.22 E-value=42 Score=28.62 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=38.5
Q ss_pred CCcceeechh--HHHHHHHHHhc--cCCCCCCeEEEeccCCChHHHHHhhc-C--CeEEEEecCChHHHHHHHH
Q 028514 45 EEYGLFVWPC--SVILAEYVWQQ--RYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 45 ~~~G~~~W~a--s~~La~fl~~~--~~~~~~~~vLELG~G~Gl~sl~~a~~-g--~~V~~tD~~~~~~~l~~~~ 111 (208)
....+|+|+. |.+-|..+... ....+|.+||=||+.+|-.--.++-- | ..|++++.++ .....+.
T Consensus 44 ~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~--r~~rdL~ 115 (229)
T PF01269_consen 44 KKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSP--RSMRDLL 115 (229)
T ss_dssp --EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSH--HHHHHHH
T ss_pred CccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecc--hhHHHHH
Confidence 3458899987 55555444332 22336789999999999876555442 3 3799999996 3444443
No 291
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=63.96 E-value=3.2 Score=37.69 Aligned_cols=70 Identities=19% Similarity=0.065 Sum_probs=47.8
Q ss_pred cceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHH-------HHHHHHHhcCC
Q 028514 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-------NMRRVCEMNKL 119 (208)
Q Consensus 47 ~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~-------~~~~n~~~n~~ 119 (208)
.|....+|.+.|.. ..+...-+|+-|.|==.|||-+-+.+|..|+.|+++|++- .++. .++.|.++-+.
T Consensus 187 iGnTSmDAeLSli~--AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDy--r~vragrg~~~si~aNFkQYg~ 262 (421)
T KOG2671|consen 187 IGNTSMDAELSLIM--ANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDY--RTVRAGRGEDESIKANFKQYGS 262 (421)
T ss_pred cCCcccchhHHHHH--hhhhccCCCCEEecCccccCceeeehhhhcceeeccccch--heeecccCCCcchhHhHHHhCC
Confidence 35555566433322 1122223678899999999999999999999999999996 4666 45666666664
Q ss_pred C
Q 028514 120 N 120 (208)
Q Consensus 120 ~ 120 (208)
+
T Consensus 263 ~ 263 (421)
T KOG2671|consen 263 S 263 (421)
T ss_pred c
Confidence 3
No 292
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.00 E-value=13 Score=32.84 Aligned_cols=40 Identities=18% Similarity=0.062 Sum_probs=34.0
Q ss_pred EEEeccCCChHHHHHhhcCCe-EEEEecCChHHHHHHHHHHHH
Q 028514 74 VVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 74 vLELG~G~Gl~sl~~a~~g~~-V~~tD~~~~~~~l~~~~~n~~ 115 (208)
||||=||.|-+++.+.+.|.+ |.+.|.++ .+.+..+.|..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~--~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDK--YAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCH--HHHHHHHHhCC
Confidence 589999999999999999987 46799996 58888888863
No 293
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=62.02 E-value=12 Score=31.68 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=27.0
Q ss_pred CeEEEeccCCChHHHHHhhcCCe--EEEEecCChHHHHHHHHHHH
Q 028514 72 ANVVELGAGTSLPGLVAAKVGSN--VTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~~--V~~tD~~~~~~~l~~~~~n~ 114 (208)
-.+.|+|||-|-+-+.++-+..+ +++.++-. .+-+..+..+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~--KVsdYVk~RI 104 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD--KVSDYVKERI 104 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhH--HHHHHHHHHH
Confidence 35899999999888888877775 44444432 3555555444
No 294
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=61.73 E-value=19 Score=27.38 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=25.5
Q ss_pred EeccCCChHHH--HH--hhc--CCeEEEEecCChHHHHHHHHHH--HHhcCC
Q 028514 76 ELGAGTSLPGL--VA--AKV--GSNVTLTDDSNRIEVLKNMRRV--CEMNKL 119 (208)
Q Consensus 76 ELG~G~Gl~sl--~~--a~~--g~~V~~tD~~~~~~~l~~~~~n--~~~n~~ 119 (208)
|+||..|..+. .. ++. +.+|++++-++ ..++.+++| ++.|..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p--~~~~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNP--SNFEKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---H--HHHHHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCH--HHHHHHhHHHHHHhcCC
Confidence 79999994443 22 233 34788888885 699999999 777754
No 295
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=60.87 E-value=2.8 Score=39.51 Aligned_cols=48 Identities=25% Similarity=0.267 Sum_probs=40.8
Q ss_pred CCeEEEeccCCChHHHHHhhcCC---eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~g~---~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+-+|||-=|++|+-+|-.|+.-. +|++-|.+. ..++.+++|++.|+..
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~--~aV~~i~~Nv~~N~v~ 160 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNE--NAVTSIQRNVELNGVE 160 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCH--HHHHHHHhhhhhcCch
Confidence 45899999999999998887532 799999996 6999999999999665
No 296
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=60.86 E-value=29 Score=30.38 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=27.0
Q ss_pred CCCeEEEeccCC-ChHHHHHhh-cCCeEEEEecCChHHHHHHHH
Q 028514 70 SGANVVELGAGT-SLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 70 ~~~~vLELG~G~-Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~ 111 (208)
++.+||=+|||. |+..+.+|+ .|++|+++|.++ +-++.++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~--~~~~~~~ 207 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP--EKLEMMK 207 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH--HHHHHHH
Confidence 578999999852 555554444 577999998875 3555543
No 297
>PRK08862 short chain dehydrogenase; Provisional
Probab=60.72 E-value=30 Score=28.55 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=30.4
Q ss_pred CCCCeEEEeccCCChHHH---HHhhcCCeEEEEecCChHHHHHHHHHHH
Q 028514 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
++++++|=.|++.|+-.- .+++.|++|++++.+. +.++.+.+.+
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~--~~l~~~~~~i 49 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ--SALKDTYEQC 49 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHH
Confidence 467899999999888432 4567888999988875 3444443333
No 298
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=59.90 E-value=29 Score=30.67 Aligned_cols=40 Identities=30% Similarity=0.453 Sum_probs=25.7
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~~ 111 (208)
++.+||=.|+| .|+..+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~--~r~~~a~ 233 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNE--DKLALAR 233 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH--HHHHHHH
Confidence 56777778876 3444444444 577 699999875 3555543
No 299
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=57.71 E-value=31 Score=31.55 Aligned_cols=58 Identities=7% Similarity=-0.046 Sum_probs=38.8
Q ss_pred eechhHHHHHHHHHhccCCCCCCeEEEeccC-CChHHHHHhhcCCeEEEEecCChHHHHHHHHHHH
Q 028514 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 50 ~~W~as~~La~fl~~~~~~~~~~~vLELG~G-~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
.+|+...+.-+.|.-. ++.+||-|.+| +-++++ +++.-++|+++|+|+. -+.+++..+
T Consensus 19 ~~WEDp~vD~~aL~i~----~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~--Q~aLleLKl 77 (380)
T PF11899_consen 19 QCWEDPRVDMEALNIG----PDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPA--QNALLELKL 77 (380)
T ss_pred cccCCcHHHHHHhCCC----CCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHH--HHHHHHHHH
Confidence 4899998888877654 45678877654 555554 3344458999999975 455555443
No 300
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=56.90 E-value=30 Score=30.69 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=26.2
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~ 110 (208)
.+.+||=.||| .|+..+.+|+ .|+ +|+++|.++ +-++.+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~--~~~~~a 226 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINP--AKFELA 226 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHH
Confidence 57788888886 3555554454 577 799998875 345444
No 301
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=56.61 E-value=35 Score=29.74 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=26.9
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCCeEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
+|.+||=.||| .|+..+.+|+ .|++|++++.++ +-++.+++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~--~~~~~a~~ 207 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGA--AARRLALA 207 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh--HHHHHHHH
Confidence 57789989975 3444343333 678999999886 34555544
No 302
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.46 E-value=20 Score=33.58 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=26.4
Q ss_pred CCCCeEEEeccC-CChHHH-HHhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~ 102 (208)
+.+++|+=+|.| +|+..+ ++.+.|++|+++|..+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 367899999988 677666 3456899999999764
No 303
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=56.28 E-value=21 Score=28.80 Aligned_cols=40 Identities=40% Similarity=0.464 Sum_probs=24.6
Q ss_pred EEEeccCC-C-hHHHHHhhcCCeEEEEecCChHHHHHHHHHHHH
Q 028514 74 VVELGAGT-S-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 74 vLELG~G~-G-l~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
|.=+|+|+ | -++..+|..|.+|++.|.++ +.++.+++.+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~--~~l~~~~~~i~ 43 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP--EALERARKRIE 43 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH--HHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh--HHHHhhhhHHH
Confidence 44577763 1 23334567799999999996 56666665544
No 304
>PLN02740 Alcohol dehydrogenase-like
Probab=53.97 E-value=32 Score=30.63 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=26.8
Q ss_pred CCCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHHH
Q 028514 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~~ 111 (208)
-+|.+||=.||| .|+..+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~--~r~~~a~ 240 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINP--EKFEKGK 240 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCCh--HHHHHHH
Confidence 357889889876 3555444444 577 699999875 3555543
No 305
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=53.94 E-value=39 Score=29.14 Aligned_cols=40 Identities=33% Similarity=0.397 Sum_probs=24.7
Q ss_pred CCCCeEEEeccC-CChHHHHHhh-cCCe-EEEEecCChHHHHHHH
Q 028514 69 FSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSNRIEVLKNM 110 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl~~a~-~g~~-V~~tD~~~~~~~l~~~ 110 (208)
.+|.+||=+|+| .|+..+.+|+ .|++ |++++.++ +-++.+
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~--~~~~~~ 204 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP--ERLELA 204 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHH
Confidence 357788888875 2444443343 6777 99998875 344444
No 306
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=52.73 E-value=25 Score=33.51 Aligned_cols=40 Identities=33% Similarity=0.456 Sum_probs=30.6
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCCeEEEEecCChHHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~ 111 (208)
++.+++=+||| .|+..+.+++ +|++|++.|.+. +.++.++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~--~rle~a~ 204 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP--EVKEQVQ 204 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHH
Confidence 45799999998 5788775554 689999999986 4566555
No 307
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=52.67 E-value=17 Score=33.65 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=22.7
Q ss_pred EEEeccC-CChHHH-HHhhcCCeEEEEecCChHHHHHHHH
Q 028514 74 VVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 74 vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~~~~~l~~~~ 111 (208)
|--+|+| .|+..- .+|..|++|+++|+++ .-++.++
T Consensus 3 I~viGtGYVGLv~g~~lA~~GHeVv~vDid~--~KV~~ln 40 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAELGHEVVCVDIDE--SKVELLN 40 (414)
T ss_pred eEEECCchHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHh
Confidence 3345555 344322 5678899999999996 3555543
No 308
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=52.30 E-value=30 Score=31.41 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=31.2
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~~~ 112 (208)
+|.+|.=.||| .|+..+.-|+ .|+ +++++|+++ +-++.+++
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~--~Kl~~A~~ 228 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINP--EKLELAKK 228 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCH--HHHHHHHh
Confidence 56788888988 6888886555 566 799999996 56666654
No 309
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=52.19 E-value=44 Score=28.71 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=34.1
Q ss_pred CCCeEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~ 114 (208)
+|.+||++|=|-|++.-++..+.. +=++++..+ +++..++.+.
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp--~V~krmr~~g 144 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP--DVLKRMRDWG 144 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEEEecCH--HHHHHHHhcc
Confidence 688999999999999988876655 445567764 7999998764
No 310
>PRK05867 short chain dehydrogenase; Provisional
Probab=51.25 E-value=53 Score=26.98 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=25.4
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-. +++.|++|++++.+.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 43 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL 43 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4678999999877765443 356788999888875
No 311
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=50.31 E-value=66 Score=27.70 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=35.5
Q ss_pred CCCCCCeEEEeccCCChH-H--HHHhhcCCeEEEEecCChHHHHHHHHHHHH
Q 028514 67 YRFSGANVVELGAGTSLP-G--LVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 67 ~~~~~~~vLELG~G~Gl~-s--l~~a~~g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
..+.++++|-=|+..|+- + ..+|+.|++|+.++.+. +-++...+-+.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~--~~~~~~~~~~~ 53 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSE--ERLEETAQELG 53 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHH
Confidence 357899999999999886 3 35788999999999996 45555544433
No 312
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=48.96 E-value=16 Score=26.84 Aligned_cols=31 Identities=35% Similarity=0.463 Sum_probs=22.3
Q ss_pred CCChHHHHHhh-cCCeEEEEecCChHHHHHHHHH
Q 028514 80 GTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 80 G~Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
|.|+..+.+|+ .|++|+++|.++ +-++.+++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~--~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSE--EKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSH--HHHHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCH--HHHHHHHh
Confidence 45777776655 688999999985 45666654
No 313
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=48.61 E-value=73 Score=27.82 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=26.1
Q ss_pred CCCCCCeEEEeccC-CChHHHH-HhhcCCeEEEEecCC
Q 028514 67 YRFSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSN 102 (208)
Q Consensus 67 ~~~~~~~vLELG~G-~Gl~sl~-~a~~g~~V~~tD~~~ 102 (208)
..+.+++|+=+|+| .|...+. +...|++|++.|.++
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 34578999999998 3444432 344688999999985
No 314
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=48.45 E-value=78 Score=25.90 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=30.5
Q ss_pred cCCCCCCeEEEeccCCChHHHH----HhhcCCeEEEEecCChHHHHHHHHH
Q 028514 66 RYRFSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 66 ~~~~~~~~vLELG~G~Gl~sl~----~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
...++|++|+=+|.| -+|.. +.+.|++|+++|.++ +.++.+..
T Consensus 23 ~~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~--~~~~~~~~ 69 (200)
T cd01075 23 TDSLEGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINE--EAVARAAE 69 (200)
T ss_pred CCCCCCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHH
Confidence 446789999999998 34444 345789999999985 45554443
No 315
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=48.38 E-value=28 Score=32.16 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=26.5
Q ss_pred CCCCCeEEEeccC-CChHHHHHh-hcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAG-TSLPGLVAA-KVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G-~Gl~sl~~a-~~g~~V~~tD~~~ 102 (208)
.+.|++|+=+|+| .|......+ ..|++|+++|.++
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3588999999999 455555333 4688999999986
No 316
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=48.17 E-value=31 Score=30.96 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=40.1
Q ss_pred CcCCcceeechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcC--Ce--EEEEecC
Q 028514 43 MKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SN--VTLTDDS 101 (208)
Q Consensus 43 ~~~~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g--~~--V~~tD~~ 101 (208)
.+.+++.|+|.=-..+-+||.+.. ..+.|+.||||.=.+..-+...+ .. .+=+|++
T Consensus 63 inRGy~~R~~aI~~~v~~Fl~~~~---~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp 122 (335)
T KOG2918|consen 63 INRGYWARTMAIRHAVRAFLEQTD---GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFP 122 (335)
T ss_pred ecchhhHHHHHHHHHHHHHHHhcC---CceEEEEcCCCccchhhhhhccCCCCcceEEEecCc
Confidence 346788889988888888888721 23579999999888877666655 34 4555555
No 317
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=48.12 E-value=17 Score=34.14 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=25.6
Q ss_pred cCCChHHHH--HhhcCCeEEEEecCChHHHHHHHHH
Q 028514 79 AGTSLPGLV--AAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 79 ~G~Gl~sl~--~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
||+|+.||+ +..+|++|.+.|++.. .+.+.++.
T Consensus 16 gG~GMsglA~iL~~~G~~VsGSD~~~~-~~t~~L~~ 50 (459)
T COG0773 16 GGIGMSGLAEILLNLGYKVSGSDLAES-PMTQRLEA 50 (459)
T ss_pred ccccHHHHHHHHHhCCCceECcccccc-HHHHHHHH
Confidence 578999884 6778999999999986 35555543
No 318
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=47.66 E-value=28 Score=32.07 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=28.5
Q ss_pred CCCCCeEEEeccC-CChHH--HHHhhcCCeEEEEecCCh
Q 028514 68 RFSGANVVELGAG-TSLPG--LVAAKVGSNVTLTDDSNR 103 (208)
Q Consensus 68 ~~~~~~vLELG~G-~Gl~s--l~~a~~g~~V~~tD~~~~ 103 (208)
..++++|+=+|.| +|+.+ .++.+.|++|+++|....
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 3466788889988 78874 367889999999998764
No 319
>PRK08339 short chain dehydrogenase; Provisional
Probab=46.66 E-value=71 Score=26.67 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=25.6
Q ss_pred CCCCeEEEeccCCChHHH---HHhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.- .+++.|++|++++.+.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~ 42 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNE 42 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 578888989988777554 3455788999988874
No 320
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=46.30 E-value=78 Score=25.90 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=25.7
Q ss_pred CCCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
.++++++|=.|++.|+-.-+ +++.|++|++++.+.
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~ 45 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA 45 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 35788999999876665443 345688999998875
No 321
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=46.08 E-value=65 Score=21.78 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=17.3
Q ss_pred CCChHHHH----HhhcCCeEEEEecCCh
Q 028514 80 GTSLPGLV----AAKVGSNVTLTDDSNR 103 (208)
Q Consensus 80 G~Gl~sl~----~a~~g~~V~~tD~~~~ 103 (208)
|.|..|+- ++..|.+|++++.++.
T Consensus 6 GgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 6 GGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp SSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 45566663 4557889999999874
No 322
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=45.15 E-value=74 Score=28.03 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=24.8
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~ 110 (208)
++.+||=+|+| .|+..+.+|+ .|+ +|+++|.++ +-++.+
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~--~~~~~~ 227 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP--DKFELA 227 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH--HHHHHH
Confidence 57788888875 2444443443 577 699999885 344444
No 323
>PRK09242 tropinone reductase; Provisional
Probab=44.67 E-value=78 Score=25.97 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCChHHHHHHHHHHH
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
++++++|=.|++.|+-.-+ +++.|++|++++.+. +-++.+..++
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~--~~~~~~~~~l 53 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDA--DALAQARDEL 53 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHH
Confidence 5678999999977665543 355788999998775 3444444433
No 324
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=44.21 E-value=89 Score=27.30 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCCeEEEEec
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDD 100 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~~V~~tD~ 100 (208)
.+.+||=.||| .|+..+.+|+ .|++|++++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 57788888886 3555554444 5779999987
No 325
>PLN02494 adenosylhomocysteinase
Probab=44.00 E-value=29 Score=32.80 Aligned_cols=51 Identities=14% Similarity=0.016 Sum_probs=32.2
Q ss_pred CcceeechhHHHHHHHHHhccCCCCCCeEEEeccC-CChHHHH-HhhcCCeEEEEecCC
Q 028514 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSN 102 (208)
Q Consensus 46 ~~G~~~W~as~~La~fl~~~~~~~~~~~vLELG~G-~Gl~sl~-~a~~g~~V~~tD~~~ 102 (208)
++|.-+|++=.-. ....+.|++|+=+|+| .|..... +...|++|+++|.++
T Consensus 235 GtgqS~~d~i~r~------t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 235 GCRHSLPDGLMRA------TDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred cccccHHHHHHHh------cCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3445566654322 2233678999999998 3443332 334688999999986
No 326
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=43.87 E-value=65 Score=28.46 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCCeEEEEecCC
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~~V~~tD~~~ 102 (208)
.|.+||=.||| .|+..+.+|+ .|++|++++.+.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 56777778886 3555554444 588888888765
No 327
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.68 E-value=34 Score=31.79 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=27.9
Q ss_pred CCCCeEEEeccC-CChHHH-HHhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~ 102 (208)
+.+++|+=+|.| +|.... ++.+.|++|+++|..+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 467899999999 777777 5677899999999764
No 328
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=43.54 E-value=54 Score=28.69 Aligned_cols=42 Identities=31% Similarity=0.384 Sum_probs=28.4
Q ss_pred CeEEEeccC-CChHHHHHhhc---CCeEEEEecCChHHHHHHHHHHHH
Q 028514 72 ANVVELGAG-TSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 72 ~~vLELG~G-~Gl~sl~~a~~---g~~V~~tD~~~~~~~l~~~~~n~~ 115 (208)
++|+=+||| .-+.+|.+++. ++.|+.+|+++ ++++.+++-+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~--~A~~~a~~lv~ 167 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDP--EANELARRLVA 167 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSH--HHHHHHHHHHH
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCH--HHHHHHHHHHh
Confidence 489999999 68888888764 45799999995 79999988776
No 329
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=43.38 E-value=25 Score=23.64 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=10.7
Q ss_pred HhhcCCeEEEEecCC
Q 028514 88 AAKVGSNVTLTDDSN 102 (208)
Q Consensus 88 ~a~~g~~V~~tD~~~ 102 (208)
+++.|.+|++.|.+.
T Consensus 15 L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 15 LAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHTTSEEEEEESSS
T ss_pred HHHCCCcEEEEecCc
Confidence 345677888888775
No 330
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=43.36 E-value=1e+02 Score=24.55 Aligned_cols=45 Identities=24% Similarity=0.223 Sum_probs=26.8
Q ss_pred CeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHhc
Q 028514 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~n 117 (208)
+.|+.||||.=--+..+......+...|++. |++++.=++.+..+
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~ 124 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPES 124 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHT
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhC
Confidence 4899999998777776666432455555554 46777766665543
No 331
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=42.99 E-value=1.2e+02 Score=25.70 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=46.1
Q ss_pred HHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHh
Q 028514 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 55 s~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
-+.|.+.+... ....+..|||-=+|+|..++++.+.|-++++.++++ +.++.+.+-+..
T Consensus 208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~--~y~~~~~~r~~~ 266 (302)
T COG0863 208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINP--EYVEVALKRLQE 266 (302)
T ss_pred hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCH--HHHHHHHHHHHh
Confidence 44555544444 445778999999999999999999999999999985 677777776654
No 332
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=42.90 E-value=78 Score=25.72 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-. +++.|++|++++.+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 5678899899876654332 345688888887654
No 333
>PRK06172 short chain dehydrogenase; Provisional
Probab=42.81 E-value=93 Score=25.39 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=25.2
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-. +++.|++|++++.+.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~ 41 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDA 41 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4678899999876665543 455788999998875
No 334
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=42.73 E-value=81 Score=26.77 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=26.4
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCCeEEEEecCChHHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~ 111 (208)
.+.+||-.||| .|...+.+|+ .|.+|++++-++ +..+.++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~--~~~~~~~ 206 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKE--EKLELAK 206 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHH
Confidence 46678877776 3555554444 678999998875 4555554
No 335
>PRK07035 short chain dehydrogenase; Provisional
Probab=42.20 E-value=99 Score=25.22 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=25.9
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-+ +++.|++|++++.+.
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~ 42 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL 42 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4678888899887766553 456788999999875
No 336
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=42.11 E-value=31 Score=32.78 Aligned_cols=32 Identities=25% Similarity=0.487 Sum_probs=25.0
Q ss_pred CCCeEEEeccC-CChHHH-HHhhcCCeEEEEecC
Q 028514 70 SGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDS 101 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~ 101 (208)
.|++|+=+|+| .|+... .+++.|++|+++|..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 57899999999 466666 345678999999954
No 337
>PRK07063 short chain dehydrogenase; Provisional
Probab=41.75 E-value=92 Score=25.59 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCCCeEEEeccCCChHHH---HHhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.- .+++.|++|++++.+.
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~ 41 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDA 41 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 467889999987666443 2456788999988875
No 338
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=41.66 E-value=30 Score=31.78 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=19.7
Q ss_pred cCCChHHH--HHhhcCCeEEEEecCCh
Q 028514 79 AGTSLPGL--VAAKVGSNVTLTDDSNR 103 (208)
Q Consensus 79 ~G~Gl~sl--~~a~~g~~V~~tD~~~~ 103 (208)
||.|+.++ ++++.|+.|+++|..+.
T Consensus 8 gG~gm~~la~~l~~~G~~V~~~D~~~~ 34 (448)
T TIGR01081 8 CGTFMGGLAMIAKQLGHEVTGSDANVY 34 (448)
T ss_pred CHHhHHHHHHHHHhCCCEEEEECCCCC
Confidence 45787777 56788999999998753
No 339
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=41.62 E-value=86 Score=25.81 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=23.1
Q ss_pred CCCCeEEEeccCCChHHH---HHhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|+..|+-.- .+++.|++|+++|...
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~ 44 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE 44 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc
Confidence 467888888876655433 2345688888887654
No 340
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=41.58 E-value=76 Score=26.21 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=23.0
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+++|++|=.|++.|+-.-. +++.|++|++++.+.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 4678888888877665543 355677887776543
No 341
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=41.57 E-value=1.2e+02 Score=24.38 Aligned_cols=41 Identities=39% Similarity=0.490 Sum_probs=27.6
Q ss_pred CCCCeEEEeccCC-ChHHHHHhh-cCCeEEEEecCChHHHHHHHH
Q 028514 69 FSGANVVELGAGT-SLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 69 ~~~~~vLELG~G~-Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~ 111 (208)
-++.+||-.|+|. |...+.+++ .|.+|++++.++ +..+.++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~--~~~~~~~ 175 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD--EKLELAK 175 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH--HHHHHHH
Confidence 3677999999986 333333333 578999999885 4555554
No 342
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=41.38 E-value=53 Score=29.02 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=36.2
Q ss_pred CeEEEeccCCChHHHHHhhcCCe-EEEEecCChHHHHHHHHHHHH
Q 028514 72 ANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCE 115 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~~-V~~tD~~~~~~~l~~~~~n~~ 115 (208)
.+++||=||.|-+++.+...|.+ +.+.|+++ .+++..+.|..
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~--~a~~ty~~n~~ 46 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP--PAVATYKANFP 46 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCH--HHHHHHHHhCC
Confidence 47999999999999999999986 78899996 68888887765
No 343
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.36 E-value=30 Score=32.22 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=26.9
Q ss_pred CCCCCCeEEEeccC-CChHHH--HHhhcCCeEEEEecCC
Q 028514 67 YRFSGANVVELGAG-TSLPGL--VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 67 ~~~~~~~vLELG~G-~Gl~sl--~~a~~g~~V~~tD~~~ 102 (208)
..+.+++|+=+|+| +|. ++ ++.+.|++|++.|.+.
T Consensus 11 ~~~~~~~v~v~G~G~sG~-a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGR-GIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred ccccCCeEEEEccCHHHH-HHHHHHHHCCCEEEEECCCh
Confidence 44577899999998 576 44 4567899999999764
No 344
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=41.21 E-value=66 Score=28.95 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=36.9
Q ss_pred eechhHHHHHHHHHhccCCCCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHH
Q 028514 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 50 ~~W~as~~La~fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~ 111 (208)
.+|+...+=.+.+.. -.|.+|.-+|+|.--+--++++.-+.|.++|+++..-++..++
T Consensus 47 qiwEDp~Vdmeam~~----g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lk 104 (414)
T COG5379 47 QIWEDPSVDMEAMQL----GIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLK 104 (414)
T ss_pred cccCCccccHHHHhc----CCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHH
Confidence 356555443333322 1456899999996644445667778999999998644444444
No 345
>PLN02780 ketoreductase/ oxidoreductase
Probab=40.98 E-value=70 Score=27.96 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCCeEEEeccCCChHHH---HHhhcCCeEEEEecCChHHHHHHHHHHH
Q 028514 70 SGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
.|+++|=.||..|+-.- .+++.|++|++++.++ +-++.+.+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~--~~l~~~~~~l 97 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNP--DKLKDVSDSI 97 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH--HHHHHHHHHH
Confidence 47889999988877433 3567799999999885 3455444444
No 346
>PRK05876 short chain dehydrogenase; Provisional
Probab=40.94 E-value=97 Score=26.12 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=24.3
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-+ +++.|++|+++|.+.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~ 40 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK 40 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5678888888877665443 355688888888764
No 347
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=40.61 E-value=1.2e+02 Score=24.90 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=29.9
Q ss_pred HHHHHHhccCCCCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 58 La~fl~~~~~~~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
|.+|+.... .++++++|=.|++.|+-.-. +++.|++|++++.+.
T Consensus 3 ~~~~~~~~~-~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~ 49 (258)
T PRK06935 3 LDKFSMDFF-SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT 49 (258)
T ss_pred hhhhccccc-cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 345554322 35788999999987766553 356788988887763
No 348
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.29 E-value=1.1e+02 Score=26.17 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCCCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 67 YRFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 67 ~~~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
..++++++|=.|++.|+-.-. +++.|++|++.|...
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~ 46 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVAS 46 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCc
Confidence 346788899899887775443 456788888888753
No 349
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=40.23 E-value=84 Score=27.66 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=24.6
Q ss_pred CCCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHH
Q 028514 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~ 110 (208)
-++.+||=.|+| .|+..+.+|+ .|+ +|+++|.++ +-++.+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~--~~~~~~ 225 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINE--DKFEKA 225 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH--HHHHHH
Confidence 357788888875 3444443343 577 799998875 344444
No 350
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=40.20 E-value=35 Score=30.81 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=31.1
Q ss_pred eEEEeccC---CChHHHHHhhcCCeEEEEecCChHHHHHHHHHH
Q 028514 73 NVVELGAG---TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 73 ~vLELG~G---~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n 113 (208)
+|+=+|+| .|.++-.+++.|.+|+++|..+ .+++.++++
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~--~~v~aL~~q 43 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQ--ELIDALNKR 43 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCCCeEEEEECCH--HHHHHHhcC
Confidence 57889998 3567878888999999999875 578877655
No 351
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.02 E-value=77 Score=26.46 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=27.3
Q ss_pred CCCCeEEEeccCCChHHH---HHhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~ 102 (208)
+.|++||--|+|.|+--- .+++.|++|+++-..+
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~ 41 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNE 41 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCH
Confidence 468889999998887433 5688899999998886
No 352
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=39.90 E-value=24 Score=31.48 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=22.0
Q ss_pred CeEEEeccCCChHHHHHhh------------cC------CeEEEEecCCh
Q 028514 72 ANVVELGAGTSLPGLVAAK------------VG------SNVTLTDDSNR 103 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~------------~g------~~V~~tD~~~~ 103 (208)
-+|+|+||..|-.++.+.. .+ .+|+..|+..+
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~N 67 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSN 67 (334)
T ss_dssp EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS
T ss_pred eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCc
Confidence 3899999999999996532 12 26999999876
No 353
>PRK06057 short chain dehydrogenase; Provisional
Probab=39.30 E-value=89 Score=25.64 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=25.5
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+++++||=.|+..|+-.-+ +++.|++|++++.+.
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~ 41 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDP 41 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5678999999976664443 355788999998875
No 354
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=39.23 E-value=65 Score=26.58 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=27.4
Q ss_pred CCCCeEEEeccCC-ChHHH-HHhhcCCeEEEEecCChHHHHH
Q 028514 69 FSGANVVELGAGT-SLPGL-VAAKVGSNVTLTDDSNRIEVLK 108 (208)
Q Consensus 69 ~~~~~vLELG~G~-Gl~sl-~~a~~g~~V~~tD~~~~~~~l~ 108 (208)
++|++||=+|.|. |.--+ .+...|++|++++-+..+++.+
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~ 48 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL 48 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH
Confidence 5788999999884 43323 4567899999988765433333
No 355
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=39.12 E-value=51 Score=28.89 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=25.1
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~ 110 (208)
++.+||=.||| .|+..+.+|+ .|+ +|+++|.++ +-++.+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~--~~~~~~ 217 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD--RKLEWA 217 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHH
Confidence 57788888875 3444444444 577 599998875 344444
No 356
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.89 E-value=91 Score=25.89 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=23.7
Q ss_pred CCCCeEEEeccC-CChHHHH----HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAG-TSLPGLV----AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl~----~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|+| ++-+|.. +++.|++|++++.+.
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 467889999984 3444444 345788999988764
No 357
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=38.78 E-value=1.1e+02 Score=21.12 Aligned_cols=35 Identities=37% Similarity=0.525 Sum_probs=21.5
Q ss_pred cCCCCCCeEEEeccCCChHHH--HHhhc-CCeEEEEec
Q 028514 66 RYRFSGANVVELGAGTSLPGL--VAAKV-GSNVTLTDD 100 (208)
Q Consensus 66 ~~~~~~~~vLELG~G~Gl~sl--~~a~~-g~~V~~tD~ 100 (208)
...+++++++-+|+|.---++ .+... +.+|.+.|.
T Consensus 18 ~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 18 NKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 344678899999997322222 22334 457877765
No 358
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=38.67 E-value=65 Score=27.68 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=26.5
Q ss_pred CeEEEeccCC--ChHHHHHhhcCCeEEEEecCChHHHHHHHHH
Q 028514 72 ANVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 72 ~~vLELG~G~--Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
++|.=+|||. +-++..+++.|.+|++.|.++ +.++.+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~--~~l~~~~~ 44 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE--EILKNAME 44 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH--HHHHHHHH
Confidence 3577778873 234445677888999999996 56665443
No 359
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.56 E-value=1.3e+02 Score=24.95 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=25.1
Q ss_pred CCCCCeEEEeccCCC-hHHH----HHhhcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAGTS-LPGL----VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G~G-l~sl----~~a~~g~~V~~tD~~~ 102 (208)
.+++|++|=.|++.| -+|. .+++.|++|++++.+.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 457889999998752 3333 3456789999998874
No 360
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=38.52 E-value=32 Score=29.50 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=18.1
Q ss_pred cCCChHHHH------HhhcCCeEEEEecCC
Q 028514 79 AGTSLPGLV------AAKVGSNVTLTDDSN 102 (208)
Q Consensus 79 ~G~Gl~sl~------~a~~g~~V~~tD~~~ 102 (208)
-|+|-.++. +++.|.+|+++|.++
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaID~dp 40 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAIDLDP 40 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 356666664 456788999999997
No 361
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=38.50 E-value=78 Score=24.02 Aligned_cols=46 Identities=20% Similarity=0.313 Sum_probs=29.9
Q ss_pred CCCCCCeEEEeccCC-ChHHH-HHhhcCC-eEEEEecCChHHHHHHHHHHH
Q 028514 67 YRFSGANVVELGAGT-SLPGL-VAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 67 ~~~~~~~vLELG~G~-Gl~sl-~~a~~g~-~V~~tD~~~~~~~l~~~~~n~ 114 (208)
..++++++|=+|+|- |...+ .++..|+ +|+++.-+. +-.+.+.+.+
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~--~ra~~l~~~~ 56 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP--ERAEALAEEF 56 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH--HHHHHHHHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHc
Confidence 356889999999983 33222 4566787 599999885 3344444443
No 362
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=38.43 E-value=1.2e+02 Score=25.51 Aligned_cols=33 Identities=15% Similarity=0.021 Sum_probs=21.4
Q ss_pred CCCeEEEeccCCChHHHHHhh----c--CCeEEEEecCC
Q 028514 70 SGANVVELGAGTSLPGLVAAK----V--GSNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~----~--g~~V~~tD~~~ 102 (208)
+.+.|||+|.-.|=..++.|. . ..+|+++|++.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdi 70 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDI 70 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-G
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCc
Confidence 447999999999888887654 2 24899999964
No 363
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=38.23 E-value=96 Score=24.99 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=20.1
Q ss_pred CCCCCCeEEEeccC-CChHHH-HHhhcCCeEEEEecCC
Q 028514 67 YRFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 67 ~~~~~~~vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~ 102 (208)
..+.||+++=+|-| +|.--. .+...|++|+++|.+|
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 45689998877766 232222 2335789999999996
No 364
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.14 E-value=41 Score=30.88 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=25.8
Q ss_pred CCCCeEEEeccC-CChHHH-HHhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~ 102 (208)
+++++|+=+|+| +|+... ++.++|++|++.|...
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~ 42 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP 42 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence 457789999988 566543 4567899999999764
No 365
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.12 E-value=1.2e+02 Score=24.30 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=24.5
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+++++||=.|++.|+-..+ +++.|++|++++.++
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3578899999876555443 345688999998875
No 366
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=37.91 E-value=99 Score=27.14 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=24.8
Q ss_pred CCCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHH
Q 028514 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~ 110 (208)
-+|.+||=.|+| .|+..+.+|+ .|+ +|++++.++ +-++.+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~--~~~~~~ 228 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNP--SKFEQA 228 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHH
Confidence 357788888864 2333333333 577 799998875 345544
No 367
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=37.64 E-value=69 Score=27.46 Aligned_cols=39 Identities=36% Similarity=0.383 Sum_probs=26.0
Q ss_pred eEEEeccCC--ChHHHHHhhcCCeEEEEecCChHHHHHHHHHH
Q 028514 73 NVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 73 ~vLELG~G~--Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n 113 (208)
+|.=+|+|. +-++..+++.|.+|++.|.++ +.++.++.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~--~~l~~~~~~ 45 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD--EALEKAKER 45 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH--HHHHHHHHH
Confidence 566778873 222334566788999999986 466666544
No 368
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=37.52 E-value=61 Score=31.89 Aligned_cols=34 Identities=24% Similarity=0.040 Sum_probs=27.7
Q ss_pred CCCeEEEeccCCChHHHHHhhc---CCeEEEEecCCh
Q 028514 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR 103 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~a~~---g~~V~~tD~~~~ 103 (208)
++..||||||-.|-..-++++. |.-|+++|+-+-
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 4668999999999998888774 446999999763
No 369
>PRK06720 hypothetical protein; Provisional
Probab=37.47 E-value=1.3e+02 Score=23.84 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=26.0
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=-|++.|+-.-. +++.|++|+++|.+.
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~ 50 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ 50 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence 4678899999887775443 456789999999875
No 370
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=37.22 E-value=60 Score=32.07 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=29.3
Q ss_pred CeEEEeccCC--ChHHHHHhhcCCeEEEEecCChHHHHHHHHHHH
Q 028514 72 ANVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 72 ~~vLELG~G~--Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
++|.=+|+|+ .-++..+|..|.+|++.|.++ +.++.+...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~--~~l~~~~~~~ 356 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ--KALDLGMTEA 356 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH--HHHHHHHHHH
Confidence 4688899996 223335678899999999996 5666655443
No 371
>PRK06398 aldose dehydrogenase; Validated
Probab=37.19 E-value=68 Score=26.61 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=21.5
Q ss_pred CCCCeEEEeccCCChHHH---HHhhcCCeEEEEec
Q 028514 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDD 100 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~ 100 (208)
++++++|=.|+..|+-.- .+++.|++|++++.
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r 38 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDI 38 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 578899999987766443 34556777766543
No 372
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.19 E-value=50 Score=30.08 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=26.1
Q ss_pred CCCeEEEeccC-CChHHH-HHhhcCCeEEEEecCCh
Q 028514 70 SGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~~ 103 (208)
.+++|+=+|.| +|..++ ++++.|++|+++|....
T Consensus 5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~ 40 (438)
T PRK03806 5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT 40 (438)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 45778888877 677777 45667999999998754
No 373
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=37.12 E-value=68 Score=29.00 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=27.2
Q ss_pred CCCeEEEeccC-CChHHHHHh-hcCCeEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a-~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
++++|+=+|+| .|...+..+ ..|++|+++|.++ +-++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~--~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI--DRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH--HHHHHHHH
Confidence 45678889887 455555433 4688999999985 34444433
No 374
>PRK08703 short chain dehydrogenase; Provisional
Probab=37.04 E-value=1.5e+02 Score=23.98 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=23.8
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.||+.|+-.-+ +++.|++|++++.+.
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 4678899999755443332 345688999998875
No 375
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=36.90 E-value=1.2e+02 Score=25.97 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCCeEEEeccCC-ChHHHHHh-hcCC-eEEEEecCChHHHHHH
Q 028514 70 SGANVVELGAGT-SLPGLVAA-KVGS-NVTLTDDSNRIEVLKN 109 (208)
Q Consensus 70 ~~~~vLELG~G~-Gl~sl~~a-~~g~-~V~~tD~~~~~~~l~~ 109 (208)
++.+||-.|||. |...+.+| ..|. +|++++.++ +..+.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~--~~~~~ 205 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLAD--APLAV 205 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH--HHHHH
Confidence 678888888752 44444334 3677 799998875 34443
No 376
>PRK06125 short chain dehydrogenase; Provisional
Probab=36.86 E-value=1.3e+02 Score=24.75 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=24.9
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-. +++.|++|++++.+.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~ 41 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA 41 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4678899999876654432 456788999998775
No 377
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=36.70 E-value=1.3e+02 Score=24.51 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=23.6
Q ss_pred CCCCeEEEeccCCChHHHHH----hhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~----a~~g~~V~~tD~~~ 102 (208)
++++++|=.|+..|+ |..+ +..|++|++++.++
T Consensus 8 ~~~k~vlItGa~g~i-G~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 8 LTGRRALVTGSSQGI-GYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCEEEEECCcchH-HHHHHHHHHHcCCEEEEEeCCH
Confidence 578899999975444 4433 44688999998875
No 378
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=36.11 E-value=36 Score=31.98 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=22.0
Q ss_pred eEEEeccCCChHH-HHHhhcCCeEEEEecCC
Q 028514 73 NVVELGAGTSLPG-LVAAKVGSNVTLTDDSN 102 (208)
Q Consensus 73 ~vLELG~G~Gl~s-l~~a~~g~~V~~tD~~~ 102 (208)
.||=+|+|.|+.+ +.++..|++|+++|...
T Consensus 9 DVvVVG~GaGl~aA~~aa~~G~~V~vlEk~~ 39 (513)
T PRK12837 9 DVLVAGSGGGVAGAYTAAREGLSVALVEATD 39 (513)
T ss_pred CEEEECchHHHHHHHHHHHCCCcEEEEecCC
Confidence 5888999966533 34567899999998654
No 379
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=36.06 E-value=72 Score=27.60 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=27.0
Q ss_pred eEEEeccCC--ChHHHHHhhcCCeEEEEecCChHHHHHHHHHH
Q 028514 73 NVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 73 ~vLELG~G~--Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n 113 (208)
+|-=+|+|+ +-++..+++.|.+|++.|.++ +.++.+...
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~--~~~~~~~~~ 47 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE--ELATAGRNR 47 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH--HHHHHHHHH
Confidence 677788883 223335577899999999996 566665443
No 380
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.96 E-value=96 Score=27.07 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=32.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEeccC--CChHH-HHHhhcCCeEEEEecC
Q 028514 56 VILAEYVWQQRYRFSGANVVELGAG--TSLPG-LVAAKVGSNVTLTDDS 101 (208)
Q Consensus 56 ~~La~fl~~~~~~~~~~~vLELG~G--~Gl~s-l~~a~~g~~V~~tD~~ 101 (208)
..+.+.+......++|++|+=+|+| .|.+- ..++..|+.|++.+..
T Consensus 144 ~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 144 AGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3344445454556789999999999 46553 3456688899988874
No 381
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=35.89 E-value=1.5e+02 Score=24.52 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=25.2
Q ss_pred CCCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
.++++++|=.|++.|+-.-. ++..|++|++++.+.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~ 44 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ 44 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 34678888889887765432 456788888887765
No 382
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=35.65 E-value=2e+02 Score=24.81 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=28.0
Q ss_pred HHHHHHhccCCCCCCeEEEeccCCChHHHH---HhhcCCe-EEEEecCC
Q 028514 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLV---AAKVGSN-VTLTDDSN 102 (208)
Q Consensus 58 La~fl~~~~~~~~~~~vLELG~G~Gl~sl~---~a~~g~~-V~~tD~~~ 102 (208)
+...|......++++++|=+||| |...-. +++.|++ |++.+.+.
T Consensus 113 ~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 113 FVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred HHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 33334333234578899999998 544332 3567874 99999874
No 383
>PRK07478 short chain dehydrogenase; Provisional
Probab=35.60 E-value=1.5e+02 Score=24.18 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=23.7
Q ss_pred CCCCeEEEeccCCChHHH---HHhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.- .+++.|++|++++.++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~ 40 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQ 40 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 456788888887665444 2456788888888764
No 384
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=35.47 E-value=67 Score=31.81 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=28.6
Q ss_pred eEEEeccCCChHH--HHHhhcCCeEEEEecCChHHHHHHHHHHH
Q 028514 73 NVVELGAGTSLPG--LVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 73 ~vLELG~G~Gl~s--l~~a~~g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
+|-=+|+|+==.| ..+|..|.+|++.|.++ +.++.+...+
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~--~~l~~~~~~~ 356 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ--HSLDLGLTEA 356 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH--HHHHHHHHHH
Confidence 6888899953333 35667899999999996 5666655544
No 385
>PRK05866 short chain dehydrogenase; Provisional
Probab=35.33 E-value=1.2e+02 Score=25.85 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=25.1
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+.++++|=.|++.|+-.-+ +++.|++|++++.+.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4678899999877665443 356788999998875
No 386
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=35.18 E-value=48 Score=30.83 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=25.6
Q ss_pred CCCCCeEEEeccC-CChHHH-HHhhcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~ 102 (208)
.+.|++|+=+|+| .|.... .+...|++|+++|.++
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 3578999999998 343333 2344688999999986
No 387
>PRK07062 short chain dehydrogenase; Provisional
Probab=35.05 E-value=1.4e+02 Score=24.53 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=24.2
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-. +++.|++|++++.+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~ 42 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDE 42 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4678888888877665543 355688888888764
No 388
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=34.78 E-value=52 Score=28.31 Aligned_cols=40 Identities=10% Similarity=-0.008 Sum_probs=26.0
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCCe-EEEEecCChHHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~~-V~~tD~~~~~~~l~~~~ 111 (208)
+++++|=+||| .|+..+.+|+ .|++ |+++|.++ +-++.+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~--~rl~~a~ 186 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP--RRRDGAT 186 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH--HHHHhhh
Confidence 56778888887 4666665554 5776 66777764 4555554
No 389
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.71 E-value=42 Score=31.11 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=25.6
Q ss_pred CCCeEEEeccC-CChHHHHHhhcCCeEEEEecCC
Q 028514 70 SGANVVELGAG-TSLPGLVAAKVGSNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~~g~~V~~tD~~~ 102 (208)
.+++|+=+|.| +|....-+.+.|++|+++|..+
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~g~~v~v~D~~~ 38 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQNKYDVIVYDDLK 38 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhCCCEEEEECCCC
Confidence 57889999999 6777665445699999999653
No 390
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=34.41 E-value=77 Score=28.33 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=22.5
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCCeEEEEecCC
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~~V~~tD~~~ 102 (208)
.+.+||=.||| .|+..+.+|+ .|++|++++.+.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 56788878876 3555544444 588999988764
No 391
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=34.33 E-value=67 Score=31.65 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=28.1
Q ss_pred CeEEEeccCC---ChHHHHHhhcCCeEEEEecCChHHHHHHHHHHH
Q 028514 72 ANVVELGAGT---SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 72 ~~vLELG~G~---Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
++|.=+|+|+ |+..+++++.|.+|++.|.++ +.++.+...+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~--~~l~~~~~~~ 348 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP--QGINNALKYA 348 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHH
Confidence 3688899985 333333335799999999996 5666665544
No 392
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.13 E-value=1.5e+02 Score=23.95 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=24.7
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|+..|+-.-+ +++.|++|++++.+.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4667888888876555443 355788999999885
No 393
>PRK06194 hypothetical protein; Provisional
Probab=34.12 E-value=1.6e+02 Score=24.59 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=24.1
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-+ +++.|++|+++|.+.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~ 40 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ 40 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 4567888888776654433 456788999999874
No 394
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=34.10 E-value=1.5e+02 Score=24.19 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=24.7
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+.+++||=.|+..|+-.-+ ++..|++|++++...
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~ 45 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA 45 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4678999999877765543 355688888887764
No 395
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=34.09 E-value=1.2e+02 Score=25.07 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=24.5
Q ss_pred CCCCeEEEeccCCChHHH---HHhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.- .+++.|++|++++.+.
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSA 40 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 467889999987766443 2455788998888764
No 396
>PRK06139 short chain dehydrogenase; Provisional
Probab=33.62 E-value=1.3e+02 Score=26.43 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=23.2
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+++++||=.|++.|+-.-. +++.|++|++++.+.
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~ 41 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDE 41 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4567888888876655443 455677888887764
No 397
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=33.36 E-value=60 Score=25.57 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=27.1
Q ss_pred CCCeEEEeccC-CChHHHH-HhhcCCeEEEEecCChHHHHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~-~a~~g~~V~~tD~~~~~~~l~~~~~n 113 (208)
+..+|+=+|+| .|.-++. +..+|++|+..|..+ +.++.++.+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~--~~~~~~~~~ 62 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP--ERLRQLESL 62 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH--HHHHHHHHT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH--HHHHhhhcc
Confidence 45688999988 4666664 345799999999984 455555443
No 398
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.13 E-value=48 Score=30.57 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=25.5
Q ss_pred CCCeEEEeccC-CChHHH--HHhhcCCeEEEEecCC
Q 028514 70 SGANVVELGAG-TSLPGL--VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl--~~a~~g~~V~~tD~~~ 102 (208)
.+++|+=+|.| +|+ ++ ++++.|++|+++|.++
T Consensus 13 ~~~~i~v~G~G~sG~-a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 13 KNKKVAVVGIGVSNI-PLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred cCCeEEEEcccHHHH-HHHHHHHHCCCEEEEECCCC
Confidence 46789999988 455 55 6678899999999875
No 399
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=33.02 E-value=1.5e+02 Score=25.78 Aligned_cols=31 Identities=45% Similarity=0.566 Sum_probs=20.6
Q ss_pred CCCeEEEeccCCChHHHH---Hh-hcCC-eEEEEecCC
Q 028514 70 SGANVVELGAGTSLPGLV---AA-KVGS-NVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~---~a-~~g~-~V~~tD~~~ 102 (208)
++.+||=.|+| .+|.+ +| ..|+ +|++++-++
T Consensus 177 ~g~~vlI~g~g--~vG~~~~~lak~~G~~~v~~~~~~~ 212 (361)
T cd08231 177 AGDTVVVQGAG--PLGLYAVAAAKLAGARRVIVIDGSP 212 (361)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 67778778764 44443 33 3588 899988664
No 400
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.01 E-value=84 Score=28.49 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=27.0
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~~~ 112 (208)
+|..+.=.|+| .|+.-+.-|+ +|| +++++|+++ +=.+.+++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~--~Kf~~ak~ 235 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINP--DKFEKAKE 235 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCH--HHHHHHHh
Confidence 56677777776 3555544344 566 899999997 46666553
No 401
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=32.82 E-value=1.5e+02 Score=24.21 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=24.4
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+.++++|=.|++.|+-.-. +++.|++|++++.+.
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~ 43 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITA 43 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4678888889776655443 355688899988875
No 402
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=32.57 E-value=1.8e+02 Score=23.42 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=22.1
Q ss_pred CCCeEEEeccCCChHHHH----HhhcCCeEEEEecCC
Q 028514 70 SGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~----~a~~g~~V~~tD~~~ 102 (208)
.+++||=.|++ |.+|.. +++.|++|++++-+.
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~ 40 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICG 40 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 56788888875 444543 345688899988874
No 403
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=32.46 E-value=76 Score=28.21 Aligned_cols=42 Identities=31% Similarity=0.371 Sum_probs=28.7
Q ss_pred CeEEEeccCC---ChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHh
Q 028514 72 ANVVELGAGT---SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 72 ~~vLELG~G~---Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
++|-=+|+|+ |+... +|..|.+|++.|.++ ++++.++..+..
T Consensus 4 ~kv~ViGaG~MG~gIA~~-~A~~G~~V~l~D~~~--~~~~~~~~~i~~ 48 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAV-FALAGYDVVLKDISP--EALERALAYIEK 48 (307)
T ss_pred cEEEEEcccchhHHHHHH-HhhcCCceEEEeCCH--HHHHHHHHHHHH
Confidence 4677789884 44333 344778999999995 677766655543
No 404
>PRK05872 short chain dehydrogenase; Provisional
Probab=32.20 E-value=1.4e+02 Score=25.44 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=24.0
Q ss_pred CCCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
.++++++|=.|++.|+-... +++.|++|++++.+.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 43 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEE 43 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35678888888776664443 355688888877764
No 405
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=32.12 E-value=30 Score=28.61 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=34.5
Q ss_pred CCeEEEeccCCChHHHHHhhcCC--eEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~g~--~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+...+|+|+..|...=.+|+.-. ++++++-- .+|-..++.|+.+|+.-
T Consensus 80 dttyidiganvgtfcgiaarhitqgkiiaiepl--temensirmnvqlnnpl 129 (286)
T PF05575_consen 80 DTTYIDIGANVGTFCGIAARHITQGKIIAIEPL--TEMENSIRMNVQLNNPL 129 (286)
T ss_pred CceEEEeccccccchhhhhhhcccCceEEEech--hhhhhheeeeeeeCCcc
Confidence 45789999999877666666432 56666544 47888888899887653
No 406
>PRK06701 short chain dehydrogenase; Provisional
Probab=32.02 E-value=1.8e+02 Score=24.78 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=24.3
Q ss_pred CCCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
.++++++|=.|++.|+-.-+ +++.|++|++++.+.
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34678888888876664443 355688888887764
No 407
>PRK05854 short chain dehydrogenase; Provisional
Probab=31.80 E-value=3.3e+02 Score=23.37 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=26.7
Q ss_pred CCCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
.++++++|=.|++.|+-.-. +++.|++|++++.+.
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~ 48 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNR 48 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35788999999987765443 456799999998875
No 408
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=31.77 E-value=24 Score=25.16 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=5.7
Q ss_pred EEeccCCChHHHHHhhc---C--CeEEEEecCC
Q 028514 75 VELGAGTSLPGLVAAKV---G--SNVTLTDDSN 102 (208)
Q Consensus 75 LELG~G~Gl~sl~~a~~---g--~~V~~tD~~~ 102 (208)
||+|+..|..++.+++. . .+++++|..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~ 33 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFP 33 (106)
T ss_dssp --------------------------EEEESS-
T ss_pred CccccccccccccccccccccccCCEEEEECCC
Confidence 69999999998876653 2 2799999986
No 409
>PRK12829 short chain dehydrogenase; Provisional
Probab=31.76 E-value=1.7e+02 Score=23.79 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=24.4
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|+..|+-..+ +++.|++|++++.+.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~ 45 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE 45 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5778999999876655443 345688888888764
No 410
>PRK07985 oxidoreductase; Provisional
Probab=31.72 E-value=1.9e+02 Score=24.69 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=23.8
Q ss_pred CCCCCeEEEeccCCChHHH---HHhhcCCeEEEEecC
Q 028514 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDS 101 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~ 101 (208)
.++++++|=.|++.|+-.- .+++.|++|++++.+
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~ 82 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP 82 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence 3577899999987665443 345678888887654
No 411
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=31.59 E-value=1.8e+02 Score=23.45 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=22.3
Q ss_pred CCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 70 SGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+++++|=.|+..|+-... +++.|++|++++.+.
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~ 37 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR 37 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 567888888765544433 345678888888775
No 412
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=31.52 E-value=1.7e+02 Score=24.10 Aligned_cols=40 Identities=25% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCCeEEEeccCC-ChHHHHHhh-cCCe-EEEEecCChHHHHHHHH
Q 028514 70 SGANVVELGAGT-SLPGLVAAK-VGSN-VTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 70 ~~~~vLELG~G~-Gl~sl~~a~-~g~~-V~~tD~~~~~~~l~~~~ 111 (208)
++.++|=.|||. |...+.+|+ .|.+ |++++.++ +-.+.++
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~--~~~~~~~ 139 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDA--ARRELAE 139 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCH--HHHHHHH
Confidence 567888887752 444443444 5777 99998875 3455443
No 413
>PRK07677 short chain dehydrogenase; Provisional
Probab=31.31 E-value=1.7e+02 Score=23.85 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=18.1
Q ss_pred CeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 72 ANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+++|=.|++.|+-.-+ +++.|++|++++.+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~ 35 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTK 35 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5666677765544332 344566777776653
No 414
>PLN02827 Alcohol dehydrogenase-like
Probab=31.13 E-value=1.5e+02 Score=26.45 Aligned_cols=40 Identities=28% Similarity=0.304 Sum_probs=24.5
Q ss_pred CCCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHH
Q 028514 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~ 110 (208)
-+|.+||=.|+| .|+..+.+|+ .|+ .|+++|.++ +-++.+
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~--~~~~~a 234 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINP--EKAEKA 234 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH--HHHHHH
Confidence 357888888875 2444443443 577 588888664 344444
No 415
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=31.10 E-value=3.8e+02 Score=24.15 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=28.6
Q ss_pred HHHhccCCCCCCeEEEeccCCChHHHHHhhcCC-eEEEEecCC
Q 028514 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSN 102 (208)
Q Consensus 61 fl~~~~~~~~~~~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~ 102 (208)
|+....-.+.+++|.=+|+ -|..-+-..+.+. +|+++|.++
T Consensus 164 y~p~la~gy~~~~v~l~iG-DG~~fl~~~~~~~~dVii~dssd 205 (337)
T KOG1562|consen 164 YLPTLACGYEGKKVKLLIG-DGFLFLEDLKENPFDVIITDSSD 205 (337)
T ss_pred HhHHHhcccCCCceEEEec-cHHHHHHHhccCCceEEEEecCC
Confidence 4433334478888877776 7776666665555 899999997
No 416
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=31.06 E-value=58 Score=30.79 Aligned_cols=44 Identities=25% Similarity=0.209 Sum_probs=33.0
Q ss_pred eEEEeccCCChHHHHHhhcCC-eEEEEecCChHHHHHHHHHHHHhc
Q 028514 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN 117 (208)
Q Consensus 73 ~vLELG~G~Gl~sl~~a~~g~-~V~~tD~~~~~~~l~~~~~n~~~n 117 (208)
+++.||||.--++.-+-+-|. .|+-+|+++. .+......|+..+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V-~V~~m~~~~~~~~ 95 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSV-VVAAMQVRNAKER 95 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHH-HHHHHHhccccCC
Confidence 799999999988888878887 7999999972 3334444555333
No 417
>PRK07890 short chain dehydrogenase; Provisional
Probab=31.04 E-value=2e+02 Score=23.30 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=24.0
Q ss_pred CCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 70 SGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+++++|=.|++.|+-.-. ++..|++|++++.++
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 567888888876665543 455788999998775
No 418
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=30.94 E-value=1.8e+02 Score=24.95 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=24.9
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCCeEEEEecCChHHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~ 111 (208)
.+.+||=.|+| .|...+.+|+ .|++|++++.++ +-++.++
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~--~~~~~~~ 204 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS--DKADLAR 204 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh--HHHHHHH
Confidence 56788888854 2333333343 578999998875 3455553
No 419
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.84 E-value=95 Score=28.91 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=24.7
Q ss_pred CCCCeEEEeccC-CChHHH-HHhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~ 102 (208)
+++++|+=+|.| +|+... ++.+.|++|++.|...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 356788888888 565422 4567899999999765
No 420
>PRK08265 short chain dehydrogenase; Provisional
Probab=30.70 E-value=1.5e+02 Score=24.54 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=23.7
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|+..|+-.-. +++.|++|+++|.+.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDA 40 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4678888888766654432 355788888888774
No 421
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=30.70 E-value=1.7e+02 Score=25.56 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=23.0
Q ss_pred CCCCeEEEeccC-CChHHHHH-hhcC-CeEEEEecCC
Q 028514 69 FSGANVVELGAG-TSLPGLVA-AKVG-SNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~sl~~-a~~g-~~V~~tD~~~ 102 (208)
+.+++|+=+||| .|...+.. ...| .+|++++.++
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 578899999986 35443332 2335 4799999885
No 422
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.65 E-value=1.1e+02 Score=27.35 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=25.6
Q ss_pred CeEEEeccCC--ChHHHHHhhcCCeEEEEecCChHHHHHHHHH
Q 028514 72 ANVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 72 ~~vLELG~G~--Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
++|-=+|+|+ .-++..++..|.+|++.|.++ +.++.++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~--~~~~~~~~ 48 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP--GAEAALRA 48 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH--HHHHHHHH
Confidence 4677788873 222334567899999999986 45554443
No 423
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=30.58 E-value=89 Score=30.85 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=28.2
Q ss_pred CeEEEeccCCC--hHHHHHh-hcCCeEEEEecCChHHHHHHHHHHH
Q 028514 72 ANVVELGAGTS--LPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 72 ~~vLELG~G~G--l~sl~~a-~~g~~V~~tD~~~~~~~l~~~~~n~ 114 (208)
++|.=+|+|+= -++..+| ..|.+|++.|.++ +.++.+..++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~--~~l~~~~~~~ 353 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP--QGINHALKYS 353 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHH
Confidence 46888999852 2222344 7799999999985 5666665544
No 424
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.51 E-value=1.6e+02 Score=26.70 Aligned_cols=32 Identities=41% Similarity=0.734 Sum_probs=24.6
Q ss_pred CCCCeEEEeccCCChHHHH----HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~----~a~~g~~V~~tD~~~ 102 (208)
+++++|+=+|+|. .|+. +++.|++|+++|.+.
T Consensus 3 ~~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCc
Confidence 4678899999885 4443 456799999999985
No 425
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=30.45 E-value=42 Score=28.07 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=12.8
Q ss_pred HHHHhhcCCeEEEEecCCh
Q 028514 85 GLVAAKVGSNVTLTDDSNR 103 (208)
Q Consensus 85 sl~~a~~g~~V~~tD~~~~ 103 (208)
+..+|+.|.+|.++|.+++
T Consensus 22 A~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 22 SAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred HHHHHhCCCeEEEEEcCCC
Confidence 3445667777888887764
No 426
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.27 E-value=1e+02 Score=26.40 Aligned_cols=38 Identities=32% Similarity=0.273 Sum_probs=25.3
Q ss_pred CeEEEeccCC--ChHHHHHhhcCCeEEEEecCChHHHHHHHH
Q 028514 72 ANVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 72 ~~vLELG~G~--Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~ 111 (208)
++|.=+|+|. +-++..+++.|.+|++.|.++ +.++.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~--~~~~~~~ 44 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA--DRLEAGL 44 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHH
Confidence 4577778873 223335667788999999986 4555543
No 427
>PRK07576 short chain dehydrogenase; Provisional
Probab=30.27 E-value=1.9e+02 Score=23.97 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=24.6
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-. ++..|++|++++.+.
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4678899999765554432 456788999999875
No 428
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.15 E-value=2e+02 Score=23.12 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=24.3
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|+..|+-... +++.|++|++++.+.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4678899899866554443 345688899998875
No 429
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=30.14 E-value=74 Score=27.72 Aligned_cols=39 Identities=28% Similarity=0.221 Sum_probs=30.2
Q ss_pred CeEEEeccC--CChHHHHHhhcCCeEEEEecCChHHHHHHHHH
Q 028514 72 ANVVELGAG--TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 72 ~~vLELG~G--~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
.+|+=+||| -|+++..+++.|.+|++++-.. +-++.+++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~--~~~~~i~~ 43 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR--QRLAAYQQ 43 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech--HHHHHHhh
Confidence 468889999 5778888899999999999874 35555554
No 430
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=29.91 E-value=1.5e+02 Score=24.44 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=23.2
Q ss_pred CCCCeEEEeccCCChHHH---HHhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.- .+++.|++|++++.+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA 39 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 457788888887665433 2355788888888764
No 431
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.85 E-value=93 Score=28.41 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=23.7
Q ss_pred CCCeEEEeccC-CChHHH-HHhhcCCeEEEEecCCh
Q 028514 70 SGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~~ 103 (208)
.+++|+=+|.| +|+... ++++.|++|++.|..+.
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46788888877 333332 34568999999998764
No 432
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=29.83 E-value=2e+02 Score=23.89 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=25.5
Q ss_pred CCCCCeEEEeccCCChHHH---HHhhcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~ 102 (208)
.++++++|=.|++.|+-.- .+++.|++|++++.+.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~ 44 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ 44 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3567888889988776443 2456788999998874
No 433
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=29.75 E-value=58 Score=29.44 Aligned_cols=41 Identities=12% Similarity=-0.063 Sum_probs=30.9
Q ss_pred CeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHH
Q 028514 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 72 ~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n 113 (208)
+..+|+|+|.|.+.=.+.....+|-+++.+. +.+++.+...
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdl-p~v~~~a~~~ 219 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDL-PFVLAAAPYL 219 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCH-HHHHhhhhhh
Confidence 4789999999998887767666888888886 3555555444
No 434
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=29.75 E-value=1.3e+02 Score=25.19 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhc---cCCCCCCeEEEeccCCChHHHH--HhhcCC---eEEEEecC
Q 028514 54 CSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLV--AAKVGS---NVTLTDDS 101 (208)
Q Consensus 54 as~~La~fl~~~---~~~~~~~~vLELG~G~Gl~sl~--~a~~g~---~V~~tD~~ 101 (208)
+++.++-++... ...+++++|+=+|||..-.++. ++..|. +++++|.+
T Consensus 5 ~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 5 AIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred HHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 567777776542 2356888999999996555553 455675 59999998
No 435
>PRK06114 short chain dehydrogenase; Provisional
Probab=29.67 E-value=2.2e+02 Score=23.32 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=23.1
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-. +++.|++|++++.+.
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~ 42 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRT 42 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4678888888766654443 344688888888764
No 436
>PRK07814 short chain dehydrogenase; Provisional
Probab=29.41 E-value=1.9e+02 Score=23.83 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=23.8
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-. +++.|++|++++.+.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTE 44 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4678899899755544332 345788999998875
No 437
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.40 E-value=1e+02 Score=26.38 Aligned_cols=38 Identities=32% Similarity=0.342 Sum_probs=25.1
Q ss_pred eEEEeccCC--ChHHHHHhhcCCeEEEEecCChHHHHHHHHH
Q 028514 73 NVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (208)
Q Consensus 73 ~vLELG~G~--Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~ 112 (208)
+|.=+|+|. +-++..+++.|.+|++.|.++ +.++.+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~--~~~~~~~~ 42 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ--EQLESAQQ 42 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH--HHHHHHHH
Confidence 566677762 223334566788999999996 56666554
No 438
>PRK06523 short chain dehydrogenase; Provisional
Probab=29.29 E-value=1.1e+02 Score=25.06 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=23.7
Q ss_pred CCCCCeEEEeccCCChHHHH---HhhcCCeEEEEecC
Q 028514 68 RFSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDS 101 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~ 101 (208)
.++++++|=.|+..|+-.-. +++.|++|++++.+
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARS 42 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCC
Confidence 45788999999877655543 34567788777654
No 439
>PRK06138 short chain dehydrogenase; Provisional
Probab=28.98 E-value=1.7e+02 Score=23.56 Aligned_cols=34 Identities=24% Similarity=0.420 Sum_probs=23.6
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.||..|+-.-+ +++.|++|++++.+.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~ 39 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA 39 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH
Confidence 4677888888876555443 355688888887664
No 440
>PRK06949 short chain dehydrogenase; Provisional
Probab=28.67 E-value=2e+02 Score=23.33 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+++++||=.|++.|+-.-+ +++.|++|++++.+.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~ 43 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV 43 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4678888888655443332 345688899888875
No 441
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.57 E-value=2.1e+02 Score=23.67 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=23.1
Q ss_pred CCCCeEEEeccCC--ChH---HHHHhhcCCeEEEEecC
Q 028514 69 FSGANVVELGAGT--SLP---GLVAAKVGSNVTLTDDS 101 (208)
Q Consensus 69 ~~~~~vLELG~G~--Gl~---sl~~a~~g~~V~~tD~~ 101 (208)
+++|.+|=-|++. |+- +..+++.|++|++++.+
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~ 43 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS 43 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence 4678888889865 542 23456778898888765
No 442
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=28.47 E-value=81 Score=31.78 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=38.7
Q ss_pred CCCCeEEEeccCCChHHHHHhhcCCeEEEEecCChHHHHHHHHHHHHh
Q 028514 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~~n~~~ 116 (208)
+.++.++|==+|-|.+.+-++++|..|+++|+++ .+.-.++..++.
T Consensus 89 ~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnP--vAylfLKavlEy 134 (875)
T COG1743 89 FEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNP--VAYLFLKAVLEY 134 (875)
T ss_pred ccCCcccccccCCCccchHHHhcCceeEEEeccc--HHHHHHHHHHhc
Confidence 3567899999999999999999999999999997 466677666553
No 443
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.47 E-value=1.1e+02 Score=26.16 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=23.5
Q ss_pred eEEEeccCC--ChHHHHHhhcCCeEEEEecCChHHHHHHH
Q 028514 73 NVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 73 ~vLELG~G~--Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~ 110 (208)
+|-=+|+|. +-++..+++.|.+|++.|.++ +.++.+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~--~~~~~~ 42 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD--AAVDRG 42 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH--HHHHHH
Confidence 455677762 333445667788999999986 455433
No 444
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=28.45 E-value=47 Score=30.87 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=23.9
Q ss_pred eEEEeccC-CChHHH-HHhhcCCeEEEEecCChHHHHHHH
Q 028514 73 NVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 73 ~vLELG~G-~Gl~sl-~~a~~g~~V~~tD~~~~~~~l~~~ 110 (208)
+|-=+|=| .|++-. ..|+.|.+|++.|+++ ..++.+
T Consensus 11 ~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~--~~Vd~l 48 (436)
T COG0677 11 TIGVIGLGYVGLPLAAAFASAGFKVIGVDINQ--KKVDKL 48 (436)
T ss_pred EEEEEccccccHHHHHHHHHcCCceEeEeCCH--HHHHHH
Confidence 45555555 455543 4577899999999996 455544
No 445
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=28.22 E-value=2e+02 Score=26.32 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=24.3
Q ss_pred CCCCCeEEEeccC-CChHHH-HHhhcC-CeEEEEecCC
Q 028514 68 RFSGANVVELGAG-TSLPGL-VAAKVG-SNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G-~Gl~sl-~~a~~g-~~V~~tD~~~ 102 (208)
.+.+++|+=+||| .|.... .++..| .+|++++.+.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~ 214 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY 214 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4578899999986 343333 334467 5899999985
No 446
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=28.07 E-value=23 Score=26.29 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=9.6
Q ss_pred EEeccCCChHHH
Q 028514 75 VELGAGTSLPGL 86 (208)
Q Consensus 75 LELG~G~Gl~sl 86 (208)
||+|||.|-.--
T Consensus 7 IDIGcG~GNTmd 18 (124)
T PF07101_consen 7 IDIGCGAGNTMD 18 (124)
T ss_pred cccccCCCcchh
Confidence 699999997543
No 447
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=28.07 E-value=1.7e+02 Score=20.80 Aligned_cols=42 Identities=29% Similarity=0.337 Sum_probs=21.1
Q ss_pred HHHHhccCCCCC-CeEEEeccCCCh--HHHHHh--hcCCeEEEEecCC
Q 028514 60 EYVWQQRYRFSG-ANVVELGAGTSL--PGLVAA--KVGSNVTLTDDSN 102 (208)
Q Consensus 60 ~fl~~~~~~~~~-~~vLELG~G~Gl--~sl~~a--~~g~~V~~tD~~~ 102 (208)
+|+..+... +| |+||=+||-+|. .+-.++ ..|++.+++-++.
T Consensus 28 ~yvk~~~~~-~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 28 EYVKSQGKI-NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp HHHHHC----TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred HHHHhcCCC-CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 344443333 55 799999998754 443333 3566888887764
No 448
>PRK07825 short chain dehydrogenase; Provisional
Probab=28.02 E-value=1.8e+02 Score=24.04 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-..+ +++.|++|++++.++
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~ 39 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDE 39 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 3567888899887765543 355688888887764
No 449
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=27.91 E-value=2.1e+02 Score=23.15 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=24.3
Q ss_pred CCCCCeEEEeccCCChHHHH----HhhcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~----~a~~g~~V~~tD~~~ 102 (208)
.++++++|=.|+.. -+|.. +++.|++|++++.+.
T Consensus 9 ~~~~k~vlItG~~g-~iG~~la~~l~~~G~~Vi~~~r~~ 46 (247)
T PRK08945 9 LLKDRIILVTGAGD-GIGREAALTYARHGATVILLGRTE 46 (247)
T ss_pred ccCCCEEEEeCCCc-hHHHHHHHHHHHCCCcEEEEeCCH
Confidence 45788899999654 44443 345688999999885
No 450
>PRK07831 short chain dehydrogenase; Provisional
Probab=27.84 E-value=2.3e+02 Score=23.26 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=23.2
Q ss_pred CCCCeEEEecc-CCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGA-GTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~-G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
.+++++|=.|+ |.|+-.-. ++..|++|+++|.+.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~ 52 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE 52 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35678888886 45654432 356788899888765
No 451
>PRK10037 cell division protein; Provisional
Probab=27.84 E-value=45 Score=27.97 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=15.6
Q ss_pred HHHHHhhcCCeEEEEecCCh
Q 028514 84 PGLVAAKVGSNVTLTDDSNR 103 (208)
Q Consensus 84 ~sl~~a~~g~~V~~tD~~~~ 103 (208)
++..+|+.|.+|.++|.+++
T Consensus 22 LA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 22 LAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred HHHHHHhcCCcEEEEeCChh
Confidence 34456788999999999973
No 452
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=27.77 E-value=54 Score=26.93 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=25.5
Q ss_pred CCCCCeEEEeccCC-Ch-HHHHHhhcCC-eEEEEecC
Q 028514 68 RFSGANVVELGAGT-SL-PGLVAAKVGS-NVTLTDDS 101 (208)
Q Consensus 68 ~~~~~~vLELG~G~-Gl-~sl~~a~~g~-~V~~tD~~ 101 (208)
.++.++|+=+|||. |. ++..+++.|. ++++.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34667899999983 33 3446778887 79999998
No 453
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=27.73 E-value=1.9e+02 Score=24.67 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=26.0
Q ss_pred CCCeEEEeccC-CChHHHHHhh--cCCeEEEEecCChHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK--VGSNVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~--~g~~V~~tD~~~~~~~l~~~ 110 (208)
++.+||=.||| .|...+.+|+ .|++|++++-++ +-.+.+
T Consensus 162 ~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~--~~~~~~ 203 (338)
T PRK09422 162 PGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDIND--DKLALA 203 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHH
Confidence 56788888864 3444444556 388999998775 455555
No 454
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=27.68 E-value=2.3e+02 Score=24.05 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=25.3
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCCeEEEEecCChHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~ 110 (208)
++.+||-.||| .|...+.+|+ .|.+|++++-+. +..+.+
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~--~~~~~~ 202 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSP--DKRELA 202 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHH
Confidence 46678888886 4444443343 578999998775 455555
No 455
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=27.60 E-value=92 Score=27.19 Aligned_cols=46 Identities=24% Similarity=0.284 Sum_probs=28.0
Q ss_pred CeEEEeccCC---ChHHHHHhh--cCCeEEEEecCChHHHHHHHHHHHHhcCC
Q 028514 72 ANVVELGAGT---SLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (208)
Q Consensus 72 ~~vLELG~G~---Gl~sl~~a~--~g~~V~~tD~~~~~~~l~~~~~n~~~n~~ 119 (208)
...||||||. |-+--.+.+ -.++|+-+|.++ .++..++.-+..|.-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DP--vv~ah~ralL~~~~~ 120 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDP--VVLAHARALLADNPR 120 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSH--HHHHCCHHHHTT-TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCc--hHHHHHHhhhcCCCC
Confidence 3799999993 444333322 256899999996 688887877766654
No 456
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=27.49 E-value=92 Score=28.06 Aligned_cols=42 Identities=33% Similarity=0.430 Sum_probs=28.7
Q ss_pred CCCeEEEec-cC-CChHHHHHhhc---CC-eEEEEecCChHHHHHHHHHH
Q 028514 70 SGANVVELG-AG-TSLPGLVAAKV---GS-NVTLTDDSNRIEVLKNMRRV 113 (208)
Q Consensus 70 ~~~~vLELG-~G-~Gl~sl~~a~~---g~-~V~~tD~~~~~~~l~~~~~n 113 (208)
.|.+|+=+| +| .|+..+.+|+. |+ +|+++|.++ +-++.+++.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~--~r~~~a~~~ 222 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVND--ERLARAQRL 222 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCH--HHHHHHHHh
Confidence 466888887 45 57777766664 33 799999986 456666553
No 457
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.29 E-value=1.1e+02 Score=28.10 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=24.8
Q ss_pred CCC-CeEEEeccC-CChHHHHH-hhc--CCeEEEEecCCh
Q 028514 69 FSG-ANVVELGAG-TSLPGLVA-AKV--GSNVTLTDDSNR 103 (208)
Q Consensus 69 ~~~-~~vLELG~G-~Gl~sl~~-a~~--g~~V~~tD~~~~ 103 (208)
+++ ++|+=+|.| +|..++.. .+. +++|++.|....
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~ 43 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRET 43 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 345 678888887 78887743 333 378999998753
No 458
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=27.03 E-value=39 Score=30.67 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=30.5
Q ss_pred EEeccCCChHHHHH---h-hcCCeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 75 VELGAGTSLPGLVA---A-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 75 LELG~G~Gl~sl~~---a-~~g~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
+|+|.| ...|.. | +.+...++||+++ -.++.+..|++.|+++
T Consensus 107 iDIgtg--asci~~llg~rq~n~~f~~teidd--~s~~~a~snV~qn~ls 152 (419)
T KOG2912|consen 107 IDIGTG--ASCIYPLLGARQNNWYFLATEIDD--MSFNYAKSNVEQNNLS 152 (419)
T ss_pred eeccCc--hhhhHHhhhchhccceeeeeeccc--cccchhhccccccccc
Confidence 466555 444432 2 3345799999997 4899999999999987
No 459
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=27.01 E-value=2.3e+02 Score=23.11 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=23.5
Q ss_pred CCCCCeEEEeccCCChHHHHH----hhcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl~~----a~~g~~V~~tD~~~ 102 (208)
.++++++|=.|+.. .+|..+ ++.|++|++++.+.
T Consensus 9 ~~~~k~ilItGa~g-~IG~~la~~l~~~G~~V~~~~r~~ 46 (259)
T PRK08213 9 DLSGKTALVTGGSR-GLGLQIAEALGEAGARVVLSARKA 46 (259)
T ss_pred CcCCCEEEEECCCc-hHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35678899999654 445543 44688899988874
No 460
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=26.90 E-value=1.2e+02 Score=26.24 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=23.8
Q ss_pred eEEEeccCC--ChHHHHHhhcCCeEEEEecCChHHHHHHHH
Q 028514 73 NVVELGAGT--SLPGLVAAKVGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 73 ~vLELG~G~--Gl~sl~~a~~g~~V~~tD~~~~~~~l~~~~ 111 (208)
+|.=+|+|. +-++..+++.|.+|++.|.++ +.++.++
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~--~~~~~~~ 42 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP--AAAAAAP 42 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH--HHHHHHH
Confidence 566777662 122334566788999999986 4555544
No 461
>PRK08643 acetoin reductase; Validated
Probab=26.75 E-value=2.4e+02 Score=22.96 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=18.8
Q ss_pred CCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 71 GANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++|=.|+..|+-.-. +++.|++|++++.+.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~ 36 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNE 36 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35666667665544332 344677777777664
No 462
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=26.61 E-value=64 Score=30.71 Aligned_cols=32 Identities=28% Similarity=0.371 Sum_probs=22.0
Q ss_pred CeEEEeccC-CChHHHH-HhhcCCeEEEEecCCh
Q 028514 72 ANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSNR 103 (208)
Q Consensus 72 ~~vLELG~G-~Gl~sl~-~a~~g~~V~~tD~~~~ 103 (208)
|+|+=+||| +||.++- +...|.++++.+.++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 689999999 6888774 3457889999998864
No 463
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=26.61 E-value=3.1e+02 Score=21.78 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=25.2
Q ss_pred ccCCCCCCeEEEecc-C-CChH-HHHHhhcCCeEEEEecCC
Q 028514 65 QRYRFSGANVVELGA-G-TSLP-GLVAAKVGSNVTLTDDSN 102 (208)
Q Consensus 65 ~~~~~~~~~vLELG~-G-~Gl~-sl~~a~~g~~V~~tD~~~ 102 (208)
....+++++++=+|+ | .|.. ...+++.|++|++++.+.
T Consensus 22 ~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 22 MGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred hCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 334567889999996 4 3422 224456788999998764
No 464
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=26.54 E-value=2.3e+02 Score=24.84 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=27.6
Q ss_pred CCCeEEEecc-C-CChHHHHHhh-cCCeEEEEecCChHHHHHHHH
Q 028514 70 SGANVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (208)
Q Consensus 70 ~~~~vLELG~-G-~Gl~sl~~a~-~g~~V~~tD~~~~~~~l~~~~ 111 (208)
+|.+||=.|| | .|...+-+|+ .|++|++++.++ +-.+.++
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~--~k~~~~~ 200 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS--QKVDLLK 200 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHH
Confidence 5788999998 3 5666665554 688999998775 3455443
No 465
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=26.49 E-value=66 Score=27.46 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=11.8
Q ss_pred hhcCCeEEEEecCChHHHHHH
Q 028514 89 AKVGSNVTLTDDSNRIEVLKN 109 (208)
Q Consensus 89 a~~g~~V~~tD~~~~~~~l~~ 109 (208)
+++|.+|.++|-+++.-+.++
T Consensus 27 a~~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 27 AARGARVALIDADPNQPLAKW 47 (231)
T ss_pred HHCCCeEEEEeCCCCCcHHHH
Confidence 445666777776665333333
No 466
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=26.28 E-value=1.7e+02 Score=27.82 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=57.1
Q ss_pred CceEEEEeccCcCCcceee-----------------------------chhHHHHHHHHHhccCCCC-CCeEEEeccCCC
Q 028514 33 PSFSIAIIENMKEEYGLFV-----------------------------WPCSVILAEYVWQQRYRFS-GANVVELGAGTS 82 (208)
Q Consensus 33 ~~~~v~i~~~~~~~~G~~~-----------------------------W~as~~La~fl~~~~~~~~-~~~vLELG~G~G 82 (208)
..+.|++.|...++-|.++ |-+-..|+++|..-+..-+ .+..+=|+|+.|
T Consensus 236 ~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~ 315 (485)
T COG0069 236 DAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHG 315 (485)
T ss_pred ceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccc
Confidence 5688999998877544332 4457788888876443222 235678888876
Q ss_pred hHHH--HHhhcCCeEEEEecCCh-----------------HHHHHHHHHHHHhcCCC
Q 028514 83 LPGL--VAAKVGSNVTLTDDSNR-----------------IEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 83 l~sl--~~a~~g~~V~~tD~~~~-----------------~~~l~~~~~n~~~n~~~ 120 (208)
+--+ ..|+.+++++.+|-.+- ...+....+-+..|++.
T Consensus 316 v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glR 372 (485)
T COG0069 316 VGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLR 372 (485)
T ss_pred hHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCc
Confidence 6555 46888999888886432 13445555666777776
No 467
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.10 E-value=89 Score=29.18 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=23.7
Q ss_pred CeEEEeccCC-ChHHH-HHhhcCCeEEEEecCC
Q 028514 72 ANVVELGAGT-SLPGL-VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 72 ~~vLELG~G~-Gl~sl-~~a~~g~~V~~tD~~~ 102 (208)
..|+=+|+|- ||.+- .+|++|.+|.+.+.+.
T Consensus 4 ~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~ 36 (487)
T COG1233 4 YDVVVIGAGLNGLAAAALLARAGLKVTVLEKND 36 (487)
T ss_pred ccEEEECCChhHHHHHHHHHhCCCEEEEEEecC
Confidence 4688899995 55444 5788999999999664
No 468
>PRK10083 putative oxidoreductase; Provisional
Probab=26.05 E-value=2e+02 Score=24.60 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=21.6
Q ss_pred CCCeEEEeccC-CChHHHHHhh--cCCe-EEEEecCC
Q 028514 70 SGANVVELGAG-TSLPGLVAAK--VGSN-VTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~--~g~~-V~~tD~~~ 102 (208)
++.+||=.|+| .|...+.+|+ .|++ |+++|.++
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~ 196 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRID 196 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence 56788888865 3444444555 3885 77788764
No 469
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=26.03 E-value=62 Score=28.11 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=27.5
Q ss_pred CCCCCeEEEeccC-CChHHH-HHhhcCC-eEEEEecCC
Q 028514 68 RFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G-~Gl~sl-~~a~~g~-~V~~tD~~~ 102 (208)
.++..+|+=+|+| .|-..+ ++|+.|. +++++|.+.
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 3456689999998 677777 6788887 899999885
No 470
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=26.02 E-value=2.1e+02 Score=24.70 Aligned_cols=39 Identities=36% Similarity=0.478 Sum_probs=24.5
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCCe-EEEEecCChHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSNRIEVLKNM 110 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~~-V~~tD~~~~~~~l~~~ 110 (208)
++.+||=+||| .|+..+.+|+ .|++ |++++.++ +-++.+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~--~~~~~~ 201 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS--EKLALA 201 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH--HHHHHH
Confidence 57788888875 3444443443 6776 78888775 344444
No 471
>PRK06841 short chain dehydrogenase; Provisional
Probab=25.99 E-value=2.2e+02 Score=23.13 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=23.1
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-+ +++.|++|++++.+.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~ 49 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4577888888876665443 355677888777664
No 472
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=25.94 E-value=81 Score=30.60 Aligned_cols=33 Identities=36% Similarity=0.430 Sum_probs=25.5
Q ss_pred CCCeEEEeccCC-ChHHH-HHhhcCCeEEEEecCC
Q 028514 70 SGANVVELGAGT-SLPGL-VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G~-Gl~sl-~~a~~g~~V~~tD~~~ 102 (208)
.+++|+=+|+|. |+... .+++.|++|++.|..+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 578999999995 55544 4677899999998753
No 473
>PRK08303 short chain dehydrogenase; Provisional
Probab=25.82 E-value=1.2e+02 Score=26.16 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=24.7
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDS 101 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~ 101 (208)
++++++|=.|++.|+-.-. +++.|++|++++.+
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 5788999999887754442 35578899998876
No 474
>PRK06128 oxidoreductase; Provisional
Probab=25.76 E-value=2.9e+02 Score=23.38 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDS 101 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~ 101 (208)
++++++|=.|+..|+-.-+ +++.|++|+++..+
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 4678999999776665443 35578888887654
No 475
>PRK09072 short chain dehydrogenase; Provisional
Probab=25.71 E-value=2e+02 Score=23.61 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=24.2
Q ss_pred CCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 70 SGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+++++|=.|++.|+-.-+ +++.|++|++++.+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~ 39 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA 39 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 567888888877665443 456788999998775
No 476
>PRK05717 oxidoreductase; Validated
Probab=25.61 E-value=2.1e+02 Score=23.35 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=24.2
Q ss_pred CCCCCeEEEeccCCChHHH---HHhhcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~ 102 (208)
.++++++|=.|++.|+-.- .+++.|++|+++|.+.
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4578888888876555443 2355688898888764
No 477
>PRK08589 short chain dehydrogenase; Validated
Probab=25.50 E-value=2.5e+02 Score=23.33 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCCCeEEEeccCCChHHH---HHhhcCCeEEEEecC
Q 028514 69 FSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDS 101 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~ 101 (208)
++++++|=.|++.|+-.- .+++.|++|++++.+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 457788888887665433 234567888888776
No 478
>PRK09186 flagellin modification protein A; Provisional
Probab=25.44 E-value=2.5e+02 Score=22.74 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=22.2
Q ss_pred CCCeEEEeccCCChHHH---HHhhcCCeEEEEecCC
Q 028514 70 SGANVVELGAGTSLPGL---VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~~ 102 (208)
++++||=.|++.|+-.- .+++.|++|++++.++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~ 38 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDK 38 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCh
Confidence 56788888886554433 2345678888887764
No 479
>PRK07109 short chain dehydrogenase; Provisional
Probab=25.43 E-value=2.4e+02 Score=24.69 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=23.7
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
+++++||=.|++.|+-.-. +++.|++|++++.+.
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~ 42 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGE 42 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4567888888766655543 456788888888764
No 480
>PRK08226 short chain dehydrogenase; Provisional
Probab=25.42 E-value=2.6e+02 Score=22.86 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|+..|+-.-. +++.|++|++++.+.
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~ 40 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISP 40 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 4567888888765554442 344677888887764
No 481
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=25.33 E-value=1.6e+02 Score=24.16 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=24.2
Q ss_pred CCCCCeEEEeccCC-ChHHH-HHhhcCCeEEEEecCC
Q 028514 68 RFSGANVVELGAGT-SLPGL-VAAKVGSNVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G~-Gl~sl-~~a~~g~~V~~tD~~~ 102 (208)
.+++++||=+|+|. |.--+ .+...|++|++++-+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 35789999999973 43322 4556789998886543
No 482
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=25.28 E-value=2.8e+02 Score=22.79 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=24.3
Q ss_pred CCCCCeEEEeccCCChHHH---HHhhcCCeEEEEecC
Q 028514 68 RFSGANVVELGAGTSLPGL---VAAKVGSNVTLTDDS 101 (208)
Q Consensus 68 ~~~~~~vLELG~G~Gl~sl---~~a~~g~~V~~tD~~ 101 (208)
.++++++|=.|++.|+-.- .+++.|++|+++...
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 3578889988988776544 346678888887543
No 483
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=25.23 E-value=1.5e+02 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=22.8
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDS 101 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~ 101 (208)
++++++|=.|++.|+-.-. +++.|++|+++|.+
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIH 42 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678899889887765543 45667777776544
No 484
>PRK10458 DNA cytosine methylase; Provisional
Probab=25.13 E-value=1.4e+02 Score=28.15 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=34.2
Q ss_pred CCeEEEeccCCChHHHHHhhcCCe-EEEEecCChHHHHHHHHHHH
Q 028514 71 GANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVC 114 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~g~~-V~~tD~~~~~~~l~~~~~n~ 114 (208)
.-+++||=||.|-+++.+-..|.+ |.+.|.++ .+.+..+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~--~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK--HAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechH--HHHHHHHHHc
Confidence 348999999999999988888885 67889986 5777777774
No 485
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=25.06 E-value=2.4e+02 Score=25.80 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCCCCeEEEeccC-CChHHH-HHhhcCC-eEEEEecCC
Q 028514 68 RFSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (208)
Q Consensus 68 ~~~~~~vLELG~G-~Gl~sl-~~a~~g~-~V~~tD~~~ 102 (208)
.+.+++|+=+||| .|...+ .++..|+ +|++++.+.
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 3577899999997 354444 2344676 799999985
No 486
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=25.02 E-value=2.9e+02 Score=25.44 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=25.7
Q ss_pred CCCeEEEeccC-CChHHH-HHhhcCC-eEEEEecCC
Q 028514 70 SGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl-~~a~~g~-~V~~tD~~~ 102 (208)
+...||-+||| .|-+++ ++|.+|. ++=++|++.
T Consensus 65 k~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~Dv 100 (427)
T KOG2017|consen 65 KNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDV 100 (427)
T ss_pred CCccEEEEccCCCCCHHHHHHHHcCCCeecccccce
Confidence 45689999999 688887 6677776 677778875
No 487
>PRK07904 short chain dehydrogenase; Provisional
Probab=24.99 E-value=2.4e+02 Score=23.27 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=23.6
Q ss_pred CCCeEEEeccCCChHHHHH---hhcC-CeEEEEecCC
Q 028514 70 SGANVVELGAGTSLPGLVA---AKVG-SNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G~Gl~sl~~---a~~g-~~V~~tD~~~ 102 (208)
.+++||=.||..|+-.-++ ++.| ++|++++.+.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~ 43 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPD 43 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 4568999999776655443 4454 7999998876
No 488
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=24.91 E-value=95 Score=28.90 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=23.7
Q ss_pred CCCeEEEeccC-CChHHHH-HhhcCCeEEEEecCC
Q 028514 70 SGANVVELGAG-TSLPGLV-AAKVGSNVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~-~a~~g~~V~~tD~~~ 102 (208)
..++|+=+|+| .|+.+.. +++.|.+|++.+.+.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~ 43 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREK 43 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCC
Confidence 45789999999 4666553 445677888888765
No 489
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=24.84 E-value=1.8e+02 Score=27.39 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=36.7
Q ss_pred CCeEEEeccCCChHHHHHhhc-C-----CeEEEEecCChHHHHHHHHHHHHhcCCC
Q 028514 71 GANVVELGAGTSLPGLVAAKV-G-----SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (208)
Q Consensus 71 ~~~vLELG~G~Gl~sl~~a~~-g-----~~V~~tD~~~~~~~l~~~~~n~~~n~~~ 120 (208)
..+|.|--||+|-+-+.+++. + ...++.+.+. .+...++.|+-.+++.
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~--~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIND--TTYRLAKMNLILHGIE 240 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCH--HHHHHHHHHHHHhCCC
Confidence 348999999999777655432 1 3478888875 7999999999888775
No 490
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=24.78 E-value=58 Score=27.41 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=13.7
Q ss_pred HHHHhhcCCeEEEEecCCh
Q 028514 85 GLVAAKVGSNVTLTDDSNR 103 (208)
Q Consensus 85 sl~~a~~g~~V~~tD~~~~ 103 (208)
+..+|+.|.+|.++|++++
T Consensus 21 A~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 21 SVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred HHHHHhCCCeEEEEecCcc
Confidence 3456677888888888874
No 491
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=24.76 E-value=74 Score=30.40 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=23.4
Q ss_pred CCCeEEEeccCC-ChHHH-HHhhcCC-eEEEEecCC
Q 028514 70 SGANVVELGAGT-SLPGL-VAAKVGS-NVTLTDDSN 102 (208)
Q Consensus 70 ~~~~vLELG~G~-Gl~sl-~~a~~g~-~V~~tD~~~ 102 (208)
.+.+||-+|||. |-=-+ .+|..|. +|+++|++.
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDT 46 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDT 46 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccc
Confidence 567999999983 33222 3456666 799999984
No 492
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=24.76 E-value=74 Score=30.47 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=21.0
Q ss_pred eEEEeccCCChHH-HHHhhcCCeEEEEecC
Q 028514 73 NVVELGAGTSLPG-LVAAKVGSNVTLTDDS 101 (208)
Q Consensus 73 ~vLELG~G~Gl~s-l~~a~~g~~V~~tD~~ 101 (208)
.|+=+|+|.|+.+ +.++..|++|++++..
T Consensus 18 DvvvvG~G~G~~aA~~a~~~G~~v~v~Ek~ 47 (564)
T PRK12845 18 DLLVVGSGTGMAAALAAHELGLSVLIVEKS 47 (564)
T ss_pred CEEEECCcHHHHHHHHHHHCCCcEEEEecC
Confidence 4777888866644 4566778888888875
No 493
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=24.74 E-value=2.4e+02 Score=24.28 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=22.8
Q ss_pred CCCeEEEeccC-CChHHHHHhh-cCC-eEEEEecCChHHHHHHH
Q 028514 70 SGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (208)
Q Consensus 70 ~~~~vLELG~G-~Gl~sl~~a~-~g~-~V~~tD~~~~~~~l~~~ 110 (208)
++.+||=.|+| .|...+.+|+ .|+ +|++++.+. +-.+.+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~--~~~~~~ 216 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDE--AKLEAA 216 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCH--HHHHHH
Confidence 56778878754 2333333333 577 788888764 344444
No 494
>PRK06153 hypothetical protein; Provisional
Probab=24.64 E-value=70 Score=29.49 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=26.3
Q ss_pred CCCCeEEEeccC-CCh-HHHHHhhcCC-eEEEEecCC
Q 028514 69 FSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl-~sl~~a~~g~-~V~~tD~~~ 102 (208)
+++.+|+=+||| +|- +...+|+.|. +++++|.+.
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 356799999999 454 4447888887 899999884
No 495
>PLN02253 xanthoxin dehydrogenase
Probab=24.45 E-value=2.4e+02 Score=23.43 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=22.2
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|+..|+-.-. +++.|++|+++|.+.
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~ 52 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQD 52 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4577888888665554332 345678888887654
No 496
>PRK05875 short chain dehydrogenase; Provisional
Probab=24.44 E-value=2.5e+02 Score=23.23 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=24.2
Q ss_pred CCCCeEEEeccCCChHHHH---HhhcCCeEEEEecCC
Q 028514 69 FSGANVVELGAGTSLPGLV---AAKVGSNVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G~Gl~sl~---~a~~g~~V~~tD~~~ 102 (208)
++++++|=.|++.|+-.-+ +++.|++|++++.+.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~ 41 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNP 41 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4578899999876654443 345788999998764
No 497
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=24.44 E-value=74 Score=23.91 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=22.9
Q ss_pred CCeEEEeccC-CCh-HHHHHhhcCC-eEEEEecCC
Q 028514 71 GANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSN 102 (208)
Q Consensus 71 ~~~vLELG~G-~Gl-~sl~~a~~g~-~V~~tD~~~ 102 (208)
.++|+=+||| .|. +...+++.|. +++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 4688899998 343 3336677887 899999885
No 498
>PRK08328 hypothetical protein; Provisional
Probab=24.20 E-value=81 Score=26.43 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=24.7
Q ss_pred CCCCeEEEeccC-CChH-HHHHhhcCC-eEEEEecCC
Q 028514 69 FSGANVVELGAG-TSLP-GLVAAKVGS-NVTLTDDSN 102 (208)
Q Consensus 69 ~~~~~vLELG~G-~Gl~-sl~~a~~g~-~V~~tD~~~ 102 (208)
+++.+|+=+||| .|.. ...+++.|. +++++|.+.
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 456789999999 3433 335677886 799999774
No 499
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=24.17 E-value=3.1e+02 Score=20.49 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=24.8
Q ss_pred HHhccCCCCCCeEEEeccCCChHHHH----HhhcC-CeEEEEecCC
Q 028514 62 VWQQRYRFSGANVVELGAGTSLPGLV----AAKVG-SNVTLTDDSN 102 (208)
Q Consensus 62 l~~~~~~~~~~~vLELG~G~Gl~sl~----~a~~g-~~V~~tD~~~ 102 (208)
+.......++++|+=+||| ..|.. +++.| .+|++.|.+.
T Consensus 10 ~~~~~~~~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 10 LEEAGIELKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred HHhhCCCCCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3333333567899999986 33333 33454 5899999885
No 500
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=24.16 E-value=83 Score=28.55 Aligned_cols=29 Identities=34% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEeccC-CChHHH--HHhhcCCeEEEEecCCh
Q 028514 74 VVELGAG-TSLPGL--VAAKVGSNVTLTDDSNR 103 (208)
Q Consensus 74 vLELG~G-~Gl~sl--~~a~~g~~V~~tD~~~~ 103 (208)
|+=+|.| +|+ ++ ++.+.|++|+++|....
T Consensus 2 ~~~iG~G~~G~-a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 2 ILILGLGKTGR-AVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred EEEEEeCHhHH-HHHHHHHHCCCEEEEEeCCCC
Confidence 3445655 677 55 45678999999998753
Done!