BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028517
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 95/154 (61%), Gaps = 3/154 (1%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G+ + V+ L+ E+ VNA D +G P+H AA G+ IV++L+SKGADVN K+
Sbjct: 11 AAENGNKDRVKDLI---ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
GRT LHYAA +G +IV+LLIS+GA +N+KD G T LH A G+ + +LLI +GA
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205
+V+ +D G+TPL A N+E W
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGW 161
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 82/127 (64%), Gaps = 3/127 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D RT LH AA GH E+V++L+S VNA D +G P+H AA G+ IV++L+SK
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLIS---KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GADVN K+ GRT LHYAA +G +IV+LLIS+GA +N+ D G T L GN +
Sbjct: 93 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIV 152
Query: 164 ELLIEEG 170
+LL ++G
Sbjct: 153 KLLEKQG 159
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D RT LH AA GH E+V++L+S VNA D +G P+H AA G+ IV++L
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLLIS---KGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
+SKGADVN + GRT L A G +IV+LL +G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 94/145 (64%), Gaps = 3/145 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G+ P+H AA G++ IVE+LL GADVN K+
Sbjct: 9 AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L+IVE+L+ GA +N+KDK G T LH A G+ + E+L++ GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 172 EVDATDKAGQTPLMNAVICYNKEFS 196
+V+A DK G+TP A+ N++ +
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIA 150
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D++G+ P+H AA G++ IVE+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GADVN K+ G T LH AA +G L+IVE+L+ GA +N++DK G T GN
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNE 147
Query: 161 ALCELL 166
+ E+L
Sbjct: 148 DIAEVL 153
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
L A G +L+ GA+V+A DK G TPL
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPL 39
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 88/133 (66%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G+ P+H AA G++ IVE+LL GADVN K+
Sbjct: 9 AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L+IVE+L+ GA +N+KDK G T LH A G+ + E+L++ GA
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+TP
Sbjct: 126 DVNAQDKFGKTPF 138
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 81/126 (64%), Gaps = 3/126 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D++G+ P+H AA G++ IVE+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GADVN K+ G T LH AA +G L+IVE+L+ GA +N++DK G T G+
Sbjct: 88 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHE 147
Query: 161 ALCELL 166
+ E+L
Sbjct: 148 DIAEVL 153
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 94/154 (61%), Gaps = 3/154 (1%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G+ + V+ L+ E+ VNA D +G P+H AA G+ +V++L+SKGADVN K+
Sbjct: 11 AAENGNKDRVKDLI---ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
GRT LH+AA G ++V+LLIS+GA +N+KD G T LH A G+ + +LLI +GA
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205
+V+ +D G+TPL A N+E W
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 81/127 (63%), Gaps = 3/127 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D RT LH AA GH EVV++L+S VNA D +G P+H AA G+ +V++L+SK
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLIS---KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GADVN K+ GRT LH+AA G ++V+LLIS+GA +N+ D G T L GN +
Sbjct: 93 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVV 152
Query: 164 ELLIEEG 170
+LL ++G
Sbjct: 153 KLLEKQG 159
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D RT LH AA GH EVV++L+S VNA D +G P+H AA G+ +V++L
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLLIS---KGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
+SKGADVN + GRT L A G ++V+LL +G
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 84/126 (66%), Gaps = 3/126 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH+AA GH EVV++LL E+ VNA D+ G P+H AA G++ +V++LL GA
Sbjct: 3 RTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN K+ GRT LH AA G L++V+LL+ GA +N+KDK G T LH A G+ + +L
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 166 LIEEGA 171
L+E GA
Sbjct: 120 LLEAGA 125
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 72/104 (69%)
Query: 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
G P+H AA G++ +V++LL GADVN K+ GRT LH AA G L++V+LL+ GA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
N+KDK G T LH A G+ + +LL+E GA+V+A DK G+TPL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 105
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ + RT LH+AA GH EVV++LL E+ VNA D+ G P+H AA G++ +V++L
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
L GADVN K+ GRT LH AA G L++V+LL+ GA
Sbjct: 88 LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D RT LH A S GH E+VE LL + VN D+ GW+P+H AAS G IV+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
KGA VN N G T LHYAASK +I +L+ GA ++KD TA+HR A+ GN
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 153
Query: 162 LCELLIEEGAEVDATDKAGQTPL 184
+ +L+ A + D G TPL
Sbjct: 154 MIHILLYYKASTNIQDTEGNTPL 176
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%)
Query: 78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
D++ +H A S G+ IVE LL G VN K+D G + LH AAS G +IV+ L+ +G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
A++N+ ++ GCT LH AS + +L+E GA DA D T + A
Sbjct: 97 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 146
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D RT LH A S GH E+VE LL + VN D+ GW+P+H AAS G IV+ LL
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
KGA VN N G T LHYAASK +I +L+ GA ++KD TA+HR A+ GN
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 154
Query: 162 LCELLIEEGAEVDATDKAGQTPL 184
+ +L+ A + D G TPL
Sbjct: 155 MIHILLYYKASTNIQDTEGNTPL 177
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%)
Query: 78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
D++ +H A S G+ IVE LL G VN K+D G + LH AAS G +IV+ L+ +G
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
A++N+ ++ GCT LH AS + +L+E GA DA D T + A
Sbjct: 98 AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRA 147
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 87/133 (65%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G+ P+H AA G++ IVE+LL GADVN K+
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L+IVE+L+ GA +N+KDK G T LH A G+ + E+L++ GA
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D++G+ P+H AA G++ IVE+L
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GADVN K+ G T LH AA +G L+IVE+L+ GA +N++DK G TA GN
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNE 159
Query: 161 ALCELL 166
L E+L
Sbjct: 160 DLAEIL 165
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D RT LH A S GH E+VE LL + VN D+ GW+P+H AAS G IV+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
KGA VN N G T LHYAASK +I +L+ GA ++KD TA+HR A+ GN
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 162 LCELLIEEGAEVDATDKAGQTPL 184
+ +L+ A + D G TPL
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPL 176
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 62/110 (56%)
Query: 78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
D++ +H A S G+ IVE LL G VN K+D G + LH AAS G +IV+ L+ +G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
A +N+ ++ GCT LH AS + +L+E GA DA D T + A
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+D T LH+AA GHPE+VE+LL + VNA D +GW P+H AA G++ IVE+L
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLL---KHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GADVN ++ G T LH AA +G L+IVE+L+ GA +N++DK G TA GN
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 161 ALCELL 166
L E+L
Sbjct: 160 DLAEIL 165
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 84/131 (64%), Gaps = 3/131 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G P+H AA IG+ IVE+LL GADVN ++
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N++D G T LH A G+ + E+L++ GA
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQT 182
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKT 148
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 60/97 (61%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN +D G T LH AA G +IVE+L+ GA +N++D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
T LH A G+ + E+L++ GA+V+A D G TPL
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPL 117
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D RT LH A S GH E+VE LL + VN D+ GW+P+H AAS G IV+ LL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
KGA VN N G T LHYAASK +I +L+ GA ++KD TA+HR A+ GN
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 162 LCELLIEEGAEVDATDKAGQTPL 184
+ +L+ A + D G TPL
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPL 176
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 62/110 (56%)
Query: 78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
D++ +H A S G+ IVE LL G VN K+D G + LH AAS G +IV+ L+ +G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
A +N+ ++ GCT LH AS + +L+E GA DA D T + A
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 83/133 (62%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D GW P+H AA G++ IVE+LL GADVN K+
Sbjct: 21 AARAGQDDEVRILMA---NGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGA 137
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA D G P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA +G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G+ + V+ LL E+ NA D +G P+H AA G+ IV++LLSKGAD N K+
Sbjct: 11 AAENGNKDRVKDLL---ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
GRT LHYAA G +IV+LL+S+GA N+KD G T LH A G+ + +LL+ +GA
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205
+ + +D G+TPL A N+E W
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGW 161
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D RT LH AA GH E+V++LLS NA D +G P+H AA G+ IV++LLSK
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLS---KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GAD N K+ GRT LHYAA G +IV+LL+S+GA N+ D G T L GN +
Sbjct: 93 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIV 152
Query: 164 ELLIEEGA 171
+LL ++G
Sbjct: 153 KLLEKQGG 160
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D RT LH AA GH E+V++LLS NA D +G P+H AA G+ IV++L
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLS---KGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
LSKGAD N + GRT L A G +IV+LL +G
Sbjct: 123 LSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 83/133 (62%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D GW P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L++VE+L+ GA +N+ D G T LH A+ G+ + E+L++ GA
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA D G P+H AA G++ +VE+LL GAD
Sbjct: 49 TPLHLAAYFGHLEIVEVLL---KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA+ G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H AA +G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L+IVE+L+ GA +N+ D +G T LH A TG+ + E+L++ GA
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA+D G P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAARVGHLEIVEVLL---KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 79/121 (65%), Gaps = 3/121 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH+AA+ GH E+VE+LL + VNAVD G P+H AAS+G++ IVE+LL GA
Sbjct: 36 RTPLHMAAAVGHLEIVEVLL---RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN K+ G T L+ AA G L+IVE+L+ GA +N++DK G TA GN L E+
Sbjct: 93 DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEI 152
Query: 166 L 166
L
Sbjct: 153 L 153
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 83/133 (62%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ AN A D G P+H AA++G++ IVE+LL GADVN +
Sbjct: 9 AARAGQDDEVRILMANGADAN---AYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AAS G L+IVE+L+ GA +N+KD G T L+ A G+ + E+L++ GA
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 126 DVNAQDKFGKTAF 138
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 79/120 (65%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNA D G P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAYWGHLEIVEVLL---KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN K+D G T LH AA++G L+IVE+L+ GA +N++DK G TA + GN L E+L
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 83/133 (62%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D GW P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGRDDEVRILMA---NGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N+KD G T LH A+ G+ + E+L++ GA
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++D+ T LH+AA+ GH E+VE+LL VNA D+ G + + GN + E+L
Sbjct: 109 KDDNGITPLHLAANRGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISINNGNEDLAEIL 165
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D +G+ P+H AAS G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA+ G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
++D T LH+AAS GH E+VE+LL ++ VNA D G P+H AA+ G++ IVE+LL
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLL---KNGADVNASDLTGITPLHLAAATGHLEIVEVLL 100
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
GADVN ++ G T LH AA G L+IVE+L+ GA +N++DK G TA GN
Sbjct: 101 KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 162 LCELL 166
L E+L
Sbjct: 161 LAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+ + GH E++E+LL + A VNA D+ GW P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLVVNNGHLEIIEVLL---KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H + G++ I+E+LL ADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA +G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKTAF 150
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G+ + V+ LL E+ VNA D +G P+H AA G+ +V++LLS+GAD N K+
Sbjct: 11 AAENGNKDRVKDLL---ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G+T LH AA G ++V+LL+S+GA N+KD G T LH A G+ + +LL+ +GA
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 172 EVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205
+ + +D G+TPL A N+E W
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 3/127 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D +T LH+AA GH EVV++LLS + A+ NA D +G P+H AA G+ +V++LLS+
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLS--QGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GAD N K+ G+T LH AA G ++V+LL+S+GA N+ D G T L GN +
Sbjct: 93 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVV 152
Query: 164 ELLIEEG 170
+LL ++G
Sbjct: 153 KLLEKQG 159
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D +T LH+AA GH EVV++LLS + A+ NA D +G P+H AA G+ +V++L
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLS--QGAD-PNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
LS+GAD N + GRT L A G ++V+LL +G
Sbjct: 123 LSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 82/133 (61%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
+ G T LH AA G L+IVE+L+ GA +N+KD G T LH A G+ + E+L++ GA
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
T LH+AA GH E+VE+LL VNA D G P+H AA G++ IVE+LL GA
Sbjct: 48 HTPLHLAAKTGHLEIVEVLLKYGAD---VNAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN K+ G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 166 L 166
L
Sbjct: 165 L 165
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
L A G +L+ GA+V+ATD G TPL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPL 51
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA+ G + V IL++ + VNA D+ G P+H AA+ G + IVE+LL GADVN +
Sbjct: 13 AAAAGQDDEVRILMA---NGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N+ D+ G T LH A +G + E+L++ GA
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 172 EVDATDKAGQTPL 184
+V+A D G T
Sbjct: 130 DVNAQDALGLTAF 142
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+D+ T LH+AA+ G E+VE+LL ++ VNA D G P+H AA G++ IVE+LL
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLL---KNGADVNASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
GADVN + G T LH AA G L+IVE+L+ GA +N++D +G TA + G
Sbjct: 93 KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQED 152
Query: 162 LCELL 166
L E+L
Sbjct: 153 LAEIL 157
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 67/108 (62%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA+ G V +L++ GADVN +D G T LH AA+ G L+IVE+L+ GA +N+ D G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
T LH A G+ + E+L++ GA+V+A D+AG TPL A + E
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEI 120
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D R LH + S E+ LLS E+ N+ + D+ GW P H A S+GN+ +V+ L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
+ D+N + G T LH A K W ++ + LI GA + KDK LHR AS G
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAV 188
+ L ELL G + V+ DK G TPL +A+
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D R LH + S E+ LLS E+ N+ + D+ GW P H A S+GN+ +V+ L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
+ D+N + G T LH A K W ++ + LI GA + KDK LHR AS G
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAV 188
+ L ELL G + V+ DK G TPL +A+
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA+ GH E+VE+LL + VNA+D G P+H AA IG++ IVE+LL GAD
Sbjct: 49 TPLHLAATYGHLEIVEVLL---KHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H AA+ G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQT 182
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKT 148
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN + G T LH AA+ G L+IVE+L+ GA +N+ D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
T LH A G+ + E+L++ GA+V+A D G TPL A I + E
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
L A G +L+ GA+V+ATD +G TPL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPL 51
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 77/126 (61%), Gaps = 3/126 (2%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+D +T LH+AA GH E+VE+LL + VNA D+ G P+H AA G++ IVE+L
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLL---KHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GADVN + G T LH AA G L+IVE+L+ GA +N++DK G TA GN
Sbjct: 100 LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 161 ALCELL 166
L E+L
Sbjct: 160 DLAEIL 165
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 81/133 (60%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D+ G P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N++D G T LH A G+ + E+L++ GA+V+A DK G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 181 QTPLMNAVICYNKEF 195
TPL A + + E
Sbjct: 81 DTPLHLAALYGHLEI 95
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D R LH + S E+ LLS E+ N+ + D+ GW P H A S+GN+ +V+ L
Sbjct: 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
+ D+N + G T LH A K W ++ + LI GA + KDK LHR AS G
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 159 NSALCELLIEEG-AEVDATDKAGQTPLMNAV 188
+ L ELL G + V+ DK G TPL +A+
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA+ GH E+VE+LL + VNA+D G P+H AA IG++ IVE+LL GAD
Sbjct: 49 TPLHLAATYGHLEIVEVLL---KHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D G P+H AA+ G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137
Query: 172 EVDATDKAGQT 182
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKT 148
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN + G T LH AA+ G L+IVE+L+ GA +N+ D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
T LH A G+ + E+L++ GA+V+A D G TPL A I + E
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI 128
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
L A G +L+ GA+V+ATD +G TPL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPL 51
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + V+A D G+ P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAYSGHLEIVEVLL---KHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA G+L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
R LL AA G + V IL++ + VNA D G P+H AA G++ IVE+LL GA
Sbjct: 16 RKLLE-AARAGQDDEVRILMA---NGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DV+ + G T LH AA G L+IVE+L+ GA +N+ D G T LH A G + E+
Sbjct: 72 DVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEV 131
Query: 166 LIEEGAEVDATDKAGQTPL 184
L++ GA+V+A DK G+T
Sbjct: 132 LLKHGADVNAQDKFGKTAF 150
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 81/133 (60%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNAVD G P+H AA G++ IVE+LL GADV+ +
Sbjct: 21 AARAGQDDEVRILIA---NGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T LH AA G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + V+A D G+ P+H AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAVSGHLEIVEVLL---KHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE 164
VN + G T LH AA +G L+IVE+L+ GA +N++DK G TA GN L +
Sbjct: 106 VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
L A G +LI GA+V+A D G TPL A + + E
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEI 62
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 80/133 (60%), Gaps = 3/133 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D GW P+H AA G++ IVE+LL GADVN +
Sbjct: 21 AARAGRDDEVRILMA---NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
G T L AA G L+IVE+L+ GA +N+ D G T LH A G+ + E+L++ GA
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137
Query: 172 EVDATDKAGQTPL 184
+V+A DK G+T
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL ++ VNAVD G P+ AA G++ IVE+LL GAD
Sbjct: 49 TPLHLAAFNGHLEIVEVLL---KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
VN + G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N++D G T LH A G+ + E+L++ GA+V+A D AG
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 181 QTPLMNAVICYNKEF 195
TPL A + + E
Sbjct: 81 MTPLRLAALFGHLEI 95
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
T LH+AA GH E+VE+LL ++ VNA D+ G + GN + E+L
Sbjct: 114 HTPLHLAAMFGHLEIVEVLL---KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA+DE+G P+H AA +G++ IVE+LL GADVN ++
Sbjct: 21 AARAGQDDEVRILMA---NGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+ G T LH AA +G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 61/98 (62%)
Query: 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA G V +L++ GADVN ++ G T LH AA G L+IVE+L+ GA +N++D
Sbjct: 20 EAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF 79
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
G T LH A G+ + E+L++ GA+V+A DK G+T
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
++D T LH+AA GH E+VE+LL VNA D G P+H AA G++ IVE+LL
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD---VNAEDNFGITPLHLAAIRGHLEIVEVLL 100
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
GADVN ++ G+TA + G + E+L
Sbjct: 101 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+ D+ G T LH A G+ + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 181 QTPLMNAVI 189
TPL A I
Sbjct: 81 ITPLHLAAI 89
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
DR LL AA G E V+ L +V VN D EG P+H AA V++VE LL
Sbjct: 11 DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
GADV+ K+ GG LH A S G ++ ELL+ GA +N D T LH A+ G +
Sbjct: 66 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 125
Query: 163 CELLIEEGAEVDATDKAGQTPL 184
C+LL++ GA+ ++ G TPL
Sbjct: 126 CKLLLQHGADPTKKNRDGNTPL 147
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGR--TALHYAASKGWLKIVELLISRGAKINSKDK 145
AA G+V V+ L + + VN ++ GR T LH+AA + +VE L+ GA +++KDK
Sbjct: 17 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
G LH S G+ + ELL++ GA V+ D TPL A
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 117
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
DR LL AA G E V+ L +V VN D EG P+H AA V++VE LL
Sbjct: 9 DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
GADV+ K+ GG LH A S G ++ ELL+ GA +N D T LH A+ G +
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Query: 163 CELLIEEGAEVDATDKAGQTPL 184
C+LL++ GA+ ++ G TPL
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPL 145
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGR--TALHYAASKGWLKIVELLISRGAKINSKDK 145
AA G+V V+ L + + VN ++ GR T LH+AA + +VE L+ GA +++KDK
Sbjct: 15 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
G LH S G+ + ELL++ GA V+ D TPL A
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW--APIHSAASIGNVTIVEMLLS 102
DR LL AA G E V+ L +V VN D EG P+H AA V++VE LL
Sbjct: 13 DRQLLE-AAKAGDVETVKKLCTVQS----VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162
GADV+ K+ GG LH A S G ++ ELL+ GA +N D T LH A+ G +
Sbjct: 68 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 127
Query: 163 CELLIEEGAEVDATDKAGQTPL 184
C+LL++ GA+ ++ G TPL
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPL 149
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGR--TALHYAASKGWLKIVELLISRGAKINSKDK 145
AA G+V V+ L + + VN ++ GR T LH+AA + +VE L+ GA +++KDK
Sbjct: 19 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
G LH S G+ + ELL++ GA V+ D TPL A
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 119
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 3/141 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA EV LL SAN A +G P+H AA G+ +V +LLSK A+
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSAN---AESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
NL N G T LH A +G + + ++LI G +++ ++G T LH + GN L + L
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 167 IEEGAEVDATDKAGQTPLMNA 187
++ A+V+A K G +PL A
Sbjct: 331 LQHQADVNAKTKLGYSPLHQA 351
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 84/167 (50%), Gaps = 9/167 (5%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH EV + LL ++ VNA ++ P+H AA IG+ +V++LL A+
Sbjct: 49 TPLHMAARAGHTEVAKYLL---QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
NL G T LH AA +G ++ V L+ + A K G T LH A G + ELL
Sbjct: 106 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Query: 167 IEEGAEVDATDKAGQTPLMNAVICYNKEF------SGCSSSNKTWSG 207
+E A +A K G TPL AV N + G S + W+G
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+V +LLS + N+ N + G P+H A G+V + ++L+ G
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGN---KSGLTPLHLVAQEGHVPVADVLIKHGVM 303
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
V+ G T LH A+ G +K+V+ L+ A +N+K K+G + LH+ A G++ + LL
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Query: 167 IEEGAEVDATDKAGQTPL 184
++ GA + G TPL
Sbjct: 364 LKNGASPNEVSSDGTTPL 381
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LHVA + ++V++LL S + + G+ P+H AA V + LL G
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPH---SPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
N ++ G T LH AA +G ++V LL+S+ A N +K G T LH A G+ + ++L
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Query: 167 IEEGAEVDATDKAGQTPL 184
I+ G VDAT + G TPL
Sbjct: 298 IKHGVMVDATTRMGYTPL 315
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
DD+T LH AA GH +V++LL + + N+ G P+H AA G+V V LL K
Sbjct: 79 DDQTPLHCAARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAAREGHVETVLALLEK 135
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
A G T LH AA G +++ ELL+ R A N+ K G T LH N +
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 195
Query: 164 ELLIEEGAEVDATDKAGQTPL 184
+LL+ G + G TPL
Sbjct: 196 KLLLPRGGSPHSPAWNGYTPL 216
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LHVAA G V E+LL D N A + G P+H A N+ IV++LL +G
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPN---AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+ G T LH AA + +++ L+ G N++ G T LH A G++ + LL
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264
Query: 167 IEEGAEVDATDKAGQTPL 184
+ + A + +K+G TPL
Sbjct: 265 LSKQANGNLGNKSGLTPL 282
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
T LH+AA GH E V LL + S + ++G+ P+H AA G V + E+LL + A
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQACMT---KKGFTPLHVAAKYGKVRVAELLLERDA 170
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
N G T LH A L IV+LL+ RG +S G T LH A +
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230
Query: 166 LIEEGAEVDATDKAGQTPL 184
L++ G +A G TPL
Sbjct: 231 LLQYGGSANAESVQGVTPL 249
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 58/101 (57%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
P+H A+ +G++ IV+ LL +GA N+ N T LH AA G ++ + L+ AK+N+K
Sbjct: 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76
Query: 144 DKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
K T LH A G++ + +LL+E A + AG TPL
Sbjct: 77 AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL 117
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N T LH+ A GH V ++L+ + +V+A G+ P+H A+ GN+ +V+ LL
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLI---KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
ADVN K G + LH AA +G IV LL+ GA N G T L
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 381
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
A G + V IL++ + VNA+D+ G P+H AA G++ IVE+LL GADVN ++
Sbjct: 21 ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
GRT LH AA+ G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 60/88 (68%)
Query: 97 VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
V +L++ GADVN +D G T LH AA +G L+IVE+L+ GA +N++D G T LH A+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPL 184
G+ + E+L+E GA+V+A DK G+T
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNA D G P+H AA++G++ IVE+LL GAD
Sbjct: 49 TPLHLAAKRGHLEIVEVLL---KHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
RT LH+AA+ GH E+VE+LL E VNA D+ G + GN + E+L
Sbjct: 81 RTPLHLAATVGHLEIVEVLL---EYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
A G + V IL++ + VNA+D+ G P+H AA G++ IVE+LL GADVN +
Sbjct: 21 ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
GRT LH AA+ G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 59/88 (67%)
Query: 97 VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
V +L++ GADVN +D G T LH AA +G L+IVE+L+ GA +N+ D G T LH A+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPL 184
G+ + E+L+E GA+V+A DK G+T
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNA D G P+H AA++G++ IVE+LL GAD
Sbjct: 49 TPLHLAAKRGHLEIVEVLL---KHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
RT LH+AA+ GH E+VE+LL E VNA D+ G + GN + E+L
Sbjct: 81 RTPLHLAATVGHLEIVEVLL---EYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
A G + V IL++ + VNA+D+ G P+H AA G++ IVE+LL GADVN +
Sbjct: 21 ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
GRT LH AA+ G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 59/88 (67%)
Query: 97 VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156
V +L++ GADVN +D G T LH AA +G L+IVE+L+ GA +N+ D G T LH A+
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 157 TGNSALCELLIEEGAEVDATDKAGQTPL 184
G+ + E+L+E GA+V+A DK G+T
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH E+VE+LL + VNA D G P+H AA++G++ IVE+LL GAD
Sbjct: 49 TPLHLAAKRGHLEIVEVLL---KHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
RT LH+AA+ GH E+VE+LL E VNA D+ G + GN + E+L
Sbjct: 81 RTPLHLAATVGHLEIVEVLL---EYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 61/91 (67%)
Query: 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
G P+H AA G++ +V++LL GADVN K+ GRT LH AA G L++V+LL+ GA +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGA 171
N+KDK G T LH A G+ + +LL+E GA
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 3/95 (3%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
+ RT LH+AA GH EVV++LL E+ VNA D+ G P+H AA G++ +V++LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
GADVN K+ GRT LH AA G L++V+LL+ GA
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
GRT LH AA G L++V+LL+ GA +N+KDK G T LH A G+ + +LL+E GA+V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 174 DATDKAGQTPL 184
+A DK G+TPL
Sbjct: 62 NAKDKNGRTPL 72
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ + RT LH+AA GH EVV++LL E+ VNA D+ G P+H AA G++ +V++L
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 101 LSKGA 105
L GA
Sbjct: 88 LEAGA 92
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D +G P+H AA ++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+ G T LH AA G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 58/97 (59%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN + G T LH AA L+IVE+L+ GA +N+ D G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
T LH A G+ + E+L++ GA+V+A DK G+T
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 42 NDDDR---TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N +DR T LH+AA H E+VE+LL + VNA D +G P+H AA G++ IVE
Sbjct: 41 NANDRKGNTPLHLAADYDHLEIVEVLL---KHGADVNAHDNDGSTPLHLAALFGHLEIVE 97
Query: 99 MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
+LL GADVN ++ G+TA + G + E+L
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+ D+ G T LH A + + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 181 QTPLMNAVICYNKEF 195
TPL A + + E
Sbjct: 81 STPLHLAALFGHLEI 95
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL + + VNA D G P+H AA +G++ IVE+LL GADVN
Sbjct: 21 AARAGQDDEVRILTA---NGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+ GRT LH AA L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 56/97 (57%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L + GADVN + G T LH AA G L+IVE+L+ GA +N+ G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
T LH A + + E+L++ GA+V+A DK G+T
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
T LH+AA GH E+VE+LL ++ VNA G P+H AA ++ IVE+LL GA
Sbjct: 48 HTPLHLAAMLGHLEIVEVLL---KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGA 104
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELL 133
DVN ++ G+TA + G + E+L
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 70/134 (52%)
Query: 51 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK 110
+ C V + L +D + N +N D+ G++P+H A G +VEML+ +GA +N+
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
N G T LH AAS G IV+ L+ A IN+ ++ G LH G + E L+ G
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 171 AEVDATDKAGQTPL 184
A V +K G+ P+
Sbjct: 129 ALVSICNKYGEMPV 142
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH A G VVE+L+ NV+N D+ P+H AAS G+ IV+ LL AD+N
Sbjct: 43 LHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
N+ G LHYA G ++ E L++ GA ++ +K G + + + L ELL E
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDK----AKAPLRELLRE 155
Query: 169 EGAEV 173
++
Sbjct: 156 RAEKM 160
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LH+AAS GH ++V+ LL +NAV+E G P+H A G + E L+
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLV 125
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
+ GA V++ N G + A + + ELL R K+
Sbjct: 126 ANGALVSICNKYGEMPVDKAKA----PLRELLRERAEKM 160
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 70/134 (52%)
Query: 51 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK 110
+ C V + L +D + N +N D+ G++P+H A G +VEML+ +GA +N+
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170
N G T LH AAS G IV+ L+ A IN+ ++ G LH G + E L+ G
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Query: 171 AEVDATDKAGQTPL 184
A V +K G+ P+
Sbjct: 124 ALVSICNKYGEMPV 137
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH A G VVE+L+ NV+N D+ P+H AAS G+ IV+ LL AD+N
Sbjct: 38 LHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLLQYKADIN 94
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
N+ G LHYA G ++ E L++ GA ++ +K G + + + L ELL E
Sbjct: 95 AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAP----LRELLRE 150
Query: 169 EGAEV 173
++
Sbjct: 151 RAEKM 155
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LH+AAS GH ++V+ LL +NAV+E G P+H A G + E L+
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLV 120
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
+ GA V++ N G + A + + ELL R K+
Sbjct: 121 ANGALVSICNKYGEMPVDKAKA----PLRELLRERAEKM 155
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 2/143 (1%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA GH EVV+ LLS + VN D+ GW P+ A +V +V++LLSKG+D
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+N++++ LH+AA G + I E+L++ +++ + G + LH A L
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196
Query: 167 IEEGAEVDATDKAGQTPLMNAVI 189
+ ++V +K G+TPL A +
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASL 219
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
+P+H+AA G+V I ML+ GA+++ ++ RT L AA L+ V+ LI GA ++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 143 KDKVGCTALHRGASTGNSALCELLIEEGA-EVDATDKAGQTPLM 185
KD G T LH A G+ + + L+ G +V+ D G TP++
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+ + R+ LH AA GH ++ +L V AN+ + E+ P+ AA ++ V+ L
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHML--VQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGN 159
+ GA V+ K+ G T LH AA KG ++V+ L+S G +N +D G T + +
Sbjct: 64 IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGC 198
L +LL+ +G++++ D L A FSGC
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAA------FSGC 156
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R++++ LH AA G ++ EILL+ ++AV+ G +P+H AA V +
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAKCD---LHAVNIHGDSPLHIAARENRYDCVVLF 196
Query: 101 LSKGADVNLKNDGGRTALHYAA--SKGW 126
LS+ +DV LKN G T L A+ S+ W
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLNSQVW 224
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA DE G P++ A + G++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
G T LH AA G L+I E+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 62/97 (63%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADVN K++ G T L+ A + G L+IVE+L+ GA +N+ D +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
T LH A G+ + E+L++ GA+V+A DK G+T
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T L++A + GH E+VE+LL ++ VNAVD G+ P+H AA IG++ I E+LL GAD
Sbjct: 49 TPLYLATAHGHLEIVEVLL---KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+KD+ G T L+ + G+ + E+L++ GA+V+A D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 181 QTPLMNAVICYNKEFS 196
TPL A + E +
Sbjct: 81 FTPLHLAAFIGHLEIA 96
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D+ G P+H AA ++ IVE+LL GADVN +
Sbjct: 21 AARAGQDDEVRILMA---NGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
G T LH A G L+IVE+L+ GA +N++DK G TA GN L E+L
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 60/98 (61%)
Query: 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA G V +L++ GADVN ++ G T LH AA L+IVE+L+ GA +N+ D +
Sbjct: 20 EAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI 79
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
G T LH A G+ + E+L++ GA+V+A DK G+T
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH+AA H E+VE+LL ++ VNA+D G P+H A G++ IVE+LL GAD
Sbjct: 49 TPLHLAAMNDHLEIVEVLL---KNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++ G+TA + G + E+L
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
LH+AA GH E+LL S + VD P+H AAS G+ IVE+LL GADVN
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHANIVEVLLKHGADVN 94
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
K+ TALH+A ++VELLI GA ++++ K TA GN L E+L
Sbjct: 95 AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ D G +P+H AA G+ + E+LL G + +
Sbjct: 9 AARAGQDDEVRILMA----NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
RT LH AAS+G IVE+L+ GA +N+KD + TALH + + ELLI+ GA
Sbjct: 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
Query: 172 EVDATDKAGQTPL 184
+V K +T
Sbjct: 125 DVHTQSKFCKTAF 137
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 62 EILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
E L+++ NV +A D P+H AA V IV++LL GADV+ K+ GG LH
Sbjct: 38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
A S G ++ ELL+ GA +N+ D T LH AS +C LL+ GA+ + G
Sbjct: 98 ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG 157
Query: 181 Q-------TPLMNAVICYNKEFSGCS 199
+ TP + + Y EF G S
Sbjct: 158 KSAVDMAPTPELRERLTY--EFKGHS 181
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 96 IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGA 155
+ E+LL KGA+VN KN T LH AA + ++E+L GAK+N+ D +G TALHR A
Sbjct: 229 VAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288
Query: 156 STGNSALCELLIEEGAE 172
G+ C LL+ G++
Sbjct: 289 LAGHLQTCRLLLSYGSD 305
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 81/198 (40%), Gaps = 60/198 (30%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD-- 106
LH A S GH EV E+LL + VNA+D + P+H AAS V + +LLS GAD
Sbjct: 95 LHNACSYGHYEVTELLL---KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT 151
Query: 107 ---------------------------------------------------VNLKN-DGG 114
+N K
Sbjct: 152 LVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH 211
Query: 115 RTALHYAASKGWLK---IVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
TALH A + K + ELL+ +GA +N K+K T LH A ++ + E+L + GA
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 172 EVDATDKAGQTPLMNAVI 189
+++A D GQT L A +
Sbjct: 272 KMNALDSLGQTALHRAAL 289
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGR--TALHYAASKGWLKIVELLISRGAKINSKDK 145
AA GN + LL+ +VN GR T LH AA ++IV+LL+ GA +++KDK
Sbjct: 31 AARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK 89
Query: 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
G LH S G+ + ELL++ GA V+A D TPL A
Sbjct: 90 GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA 131
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 10/125 (8%)
Query: 47 TLLHVAASCGHP---EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
T LH A + HP +V E+LL + ANV N +++ P+H AA + ++E+L
Sbjct: 213 TALHCAVASLHPKRKQVAELLLR--KGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKH 269
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163
GA +N + G+TALH AA G L+ LL+S G+ + G TA A GN A+
Sbjct: 270 GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA----AQMGNEAVQ 325
Query: 164 ELLIE 168
++L E
Sbjct: 326 QILSE 330
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+N D T LHVAA H +V+E+L + +NA+D G +H AA G++ +L
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVL---HKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Query: 101 LSKGADVNLKNDGGRTA 117
LS G+D ++ + G TA
Sbjct: 300 LSYGSDPSIISLQGFTA 316
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 63/97 (64%)
Query: 79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
++G P+H+AA G+ V+ LLSKGADVN ++ G T LH AA G +IV+LL+++GA
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175
+N++ K G T H G+ + +LL +GA+V+A
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
D T LH AA GH E V+ LLS VNA ++G P+H AA G+ IV++LL+K
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
GADVN ++ G T H A G +IV+LL ++GA +N++
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173
G T LH AA G + V+ L+S+GA +N++ K G T LH A G++ + +LL+ +GA+V
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 174 DATDKAGQTP 183
+A K G TP
Sbjct: 69 NARSKDGNTP 78
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R+ D T LH+AA GH E+V++LL+ VNA ++G P H A G+ IV++L
Sbjct: 38 RSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 101 LSKGADVNLK 110
+KGADVN +
Sbjct: 95 DAKGADVNAR 104
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 145 KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
K G T LH A G++ + L+ +GA+V+A K G TPL
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPL 46
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN ++G +P+H AA G ++ +LL GA+ +N LH A +G ++V+ L
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189
+ AK N KD G T L S G+ L LL++ GA ++A++ G T L AVI
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+ D + LHVAA G +++ +LL +A NA + P+H A G+ +V+ LL
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNA---DQAVPLHLACQQGHFQVVKCLL 139
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
A N K+ G T L YA S G ++V LL+ GA IN+ + G TALH +
Sbjct: 140 DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF 199
Query: 162 LCELLIEEGAEVDATDKAGQT 182
+ ELL+ GA V +K +T
Sbjct: 200 VVELLLLHGASVQVLNKRQRT 220
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
RN D LH+A GH +VV+ LL +S N D G P+ A S G+ +V +L
Sbjct: 115 RNADQAVPLHLACQQGHFQVVKCLL---DSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L GA +N N+ G TALH A + + +VELL+ GA + +K TA+ + NS
Sbjct: 172 LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAV--DCAEQNS 229
Query: 161 ALCELL 166
+ ELL
Sbjct: 230 KIMELL 235
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
E NV+N DEEG+ P+ AA+ G + +VE LL GAD L G +AL A SKG+
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 99
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAE 172
IV++L+ G +N D G T L A GN C ++L+E GA+
Sbjct: 100 IVKMLLDCGVDVNEYDWNGGTPLLY-AVHGNHVKCVKMLLESGAD 143
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 49 LHVAASCGHPEVVEILL--SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
L +A S G+ ++V++LL VD VN D G P+ A +V V+MLL GAD
Sbjct: 89 LSLACSKGYTDIVKMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
++ D G ++ A + G+ + +++ S K+
Sbjct: 144 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 177
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
E NV+N DEEG+ P+ AA+ G + +VE LL GAD L G +AL A SKG+
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 81
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAE 172
IV++L+ G +N D G T L A GN C ++L+E GA+
Sbjct: 82 IVKMLLDCGVDVNEYDWNGGTPLLY-AVHGNHVKCVKMLLESGAD 125
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 49 LHVAASCGHPEVVEILL--SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
L +A S G+ ++V++LL VD VN D G P+ A +V V+MLL GAD
Sbjct: 71 LSLACSKGYTDIVKMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
++ D G ++ A + G+ + +++ S K+
Sbjct: 126 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 159
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
E NV+N DEEG+ P+ AA+ G + +VE LL GAD L G +AL A SKG+
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83
Query: 129 IVELLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAE 172
IV++L+ G +N D G T L A GN C ++L+E GA+
Sbjct: 84 IVKMLLDCGVDVNEYDWNGGTPLLY-AVHGNHVKCVKMLLESGAD 127
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 49 LHVAASCGHPEVVEILL--SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
L +A S G+ ++V++LL VD VN D G P+ A +V V+MLL GAD
Sbjct: 73 LSLACSKGYTDIVKMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
++ D G ++ A + G+ + +++ S K+
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 50 HVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIHSAASIGNVTIVEMLLSKGADVN 108
H+ E V+++ + E VN +EEG W P+H+A + IVE+LL GAD
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
L+ G T AA G +K+++L +S+GA +N D G TA A G + L +
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 169 EGAEV----------DATDKAGQTPLMNA 187
GA V + K G T LM+A
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDA 155
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 18/163 (11%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R + T +AA G +++++ LS + A+V N D G+ AA G V ++ L
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLS--KGADV-NECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 101 LSKGADVNLKND----------GGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCT 149
+GA+VNL+ GG TAL AA KG ++++++L+ GA +N+ D +G
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 150 AL-HRGASTGNS---ALCELLIEEGAEVDATDKAGQTPLMNAV 188
AL H S+ +S A+ LL++ GA+V+ + G+TPL+ AV
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHSAASIGNV---TIVEMLLS 102
T L AA GH EV++ILL DE VNA D G A IH+ S + I +LL
Sbjct: 150 TALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGASTGNSA 161
GADVN++ + G+T L A K L +V+ L+ + +IN D G TAL
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267
Query: 162 LCELLIEEGAEVDATD 177
+ ELL + GA D D
Sbjct: 268 IAELLCKRGASTDCGD 283
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 93 NVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
+V +V+ LL GA+VN + + GG T LH A IVELL+ GA + K G T
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
A G+ L +L + +GA+V+ D G T M A + Y K
Sbjct: 77 LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV-YGK 117
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 50 HVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIHSAASIGNVTIVEMLLSKGADVN 108
H+ E V+++ + E VN +EEG W P+H+A + IVE+LL GAD
Sbjct: 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 86
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
L+ G T AA G +K+++L +S+GA +N D G TA A G + L +
Sbjct: 87 LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 146
Query: 169 EGAEV----------DATDKAGQTPLMNA 187
GA V + K G T LM+A
Sbjct: 147 RGANVNLRRKTKEDQERLRKGGATALMDA 175
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 18/163 (11%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R + T +AA G +++++ LS VN D G+ AA G V ++ L
Sbjct: 88 RKKNGATPFILAAIAGSVKLLKLFLS---KGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
Query: 101 LSKGADVNLKND----------GGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCT 149
+GA+VNL+ GG TAL AA KG ++++++L+ GA +N+ D +G
Sbjct: 145 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 204
Query: 150 AL-HRGASTGNS---ALCELLIEEGAEVDATDKAGQTPLMNAV 188
AL H S+ +S A+ LL++ GA+V+ + G+TPL+ AV
Sbjct: 205 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHSAASIGNV---TIVEMLLS 102
T L AA GH EV++ILL DE VNA D G A IH+ S + I +LL
Sbjct: 170 TALMDAAEKGHVEVLKILL--DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 227
Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGASTGNSA 161
GADVN++ + G+T L A K L +V+ L+ + +IN D G TAL
Sbjct: 228 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 287
Query: 162 LCELLIEEGAEVDATD 177
+ ELL + GA D D
Sbjct: 288 IAELLCKRGASTDCGD 303
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 93 NVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
+V +V+ LL GA+VN + + GG T LH A IVELL+ GA + K G T
Sbjct: 37 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 96
Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193
A G+ L +L + +GA+V+ D G T M A + Y K
Sbjct: 97 ILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV-YGK 137
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
D + T LH A GH +V L+ +++ D EG + IH AA G+ +IV L++
Sbjct: 74 DLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 103 KGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKV-GCTALHRGASTGNS 160
KG DV++ + G T L +AA + + LL++ +N DK TALH GN+
Sbjct: 131 KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190
Query: 161 ALCELLIEEGAEVDATDKAGQTPL 184
+ LL+E GA VDA + G++ L
Sbjct: 191 TVISLLLEAGANVDAQNIKGESAL 214
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN-LKNDGGRTALHYAASKGWL 127
E+ V D+E +H AA + +V+ +SKGA V+ L D T LH+A +G L
Sbjct: 30 EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL 89
Query: 128 KIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
+V L+ GA + D GC+ +H A G++++ LI +G +VD D+ G TPLM A
Sbjct: 90 SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA 149
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 41/128 (32%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI----------------------- 85
+H+AA GH +V L++ + V+ +D+ G P+
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169
Query: 86 ------------HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVE 131
H A GN T++ +LL GA+V+ +N G +AL A + W+ I
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWM-INH 228
Query: 132 LLISRGAK 139
L +R AK
Sbjct: 229 LQEARQAK 236
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 52/98 (53%)
Query: 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
+A S G+ V LL +GAD+N N G TALH A + +V+ L+ GA IN D
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
G LH AS G + E LI +GA V A + G TPL
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 32/164 (19%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI------------HSAASIGNVTI 96
LH AASCG+ ++ E L+S V AV+ EG P+ + + V I
Sbjct: 110 LHAAASCGYLDIAEYLIS---QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 97 V------EMLLSKGA----------DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
E ++ + A DV GG TALH AA+KG+ ++++LLI +
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGG-TALHVAAAKGYTEVLKLLIQARYDV 225
Query: 141 NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
N KD G T LH A G C +L+E +++A +K GQT
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 30/173 (17%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LH A + ++V+ L V+ AN+ N D EGW P+H+AAS G + I E L+
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFL--VENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLI 126
Query: 102 SKGADVNLKNDGGRTALHYAAS------------------KGWLKIVELLISRGAK--IN 141
S+GA V N G T L A + K E ++ R A+ +N
Sbjct: 127 SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLN 186
Query: 142 S-------KDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
S K G TALH A+ G + + +LLI+ +V+ D G TPL A
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 53 ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
A+C + E+L ++ A++ N + +G +H A NV +V+ L+ GA++N ++
Sbjct: 46 AACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
G LH AAS G+L I E LIS+GA + + + G T L
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LHVAA+ G+ EV+++L+ ++ VN D +GW P+H+AA G +L+ D
Sbjct: 201 TALHVAAAKGYTEVLKLLI---QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257
Query: 107 VNLKNDGGRTALHYA 121
+ N G+TA A
Sbjct: 258 MEAVNKVGQTAFDVA 272
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
A S G + V L+ RGA IN + G TALH+ N + + L+E GA ++ D G
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 181 QTPLMNAVIC 190
PL A C
Sbjct: 107 WIPLHAAASC 116
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+N+ +T LH+A PE+ E LL + D G P+H A G + V +L
Sbjct: 38 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 94
Query: 101 LSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHR 153
+L N G T LH A+ G+L IVELL+S GA +N+++ G TALH
Sbjct: 95 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 154
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTP 183
N L LL++ GA+V+ G +P
Sbjct: 155 AVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
+N+ +T LH+A PE+ E LL + D G P+H A G + V +L
Sbjct: 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 97
Query: 101 LSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHR 153
+L N G T LH A+ G+L IVELL+S GA +N+++ G TALH
Sbjct: 98 TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTP 183
N L LL++ GA+V+ G +P
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%)
Query: 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA G V +L++ GADVN K+ G T LH AA +G L+IVE+L+ GA +N++DK
Sbjct: 8 EAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
Query: 147 GCTALHRGASTGNSALCELL 166
G TA GN L E+L
Sbjct: 68 GKTAFDISIDNGNEDLAEIL 87
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ + VNA D++G+ P+H AA G++ IVE+LL GADVN ++
Sbjct: 9 AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 112 DGGRTALHYAASKGWLKIVELL 133
G+TA + G + E+L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA +N+KDK G T LH A G+ + E+L++ GA+V+A DK G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 181 QTPL 184
+T
Sbjct: 69 KTAF 72
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++ D T LH+AA GH E+VE+LL ++ VNA D+ G + GN + E+L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
L A G +L+ GA+V+A DK G TPL
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPL 39
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%)
Query: 78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
+ G +H A+ G++ VE LL G+D N+K+ G T LH A + G LK+VELL+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
A +N+ + LH A G+ + +LL+ GA +A + G P+
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N TLLH+A+ G VE LL NV D GW P+H A + G++ +VE+LL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEACNHGHLKVVELLL 63
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
A VN + LH AA G + IV+LL+S GA N+ + G +
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%)
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
N G T LH A+ KG + VE L+ G+ N KD G T LH + G+ + ELL++
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 169 EGAEVDATDKAGQTPLMNA 187
A V+ T +PL +A
Sbjct: 65 HKALVNTTGYQNDSPLHDA 83
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
T LH A + GH +VVE+LL + +VN + +P+H AA G+V IV++LLS GA
Sbjct: 45 TPLHEACNHGHLKVVELLL---QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Query: 107 VNLKNDGGRTALHY 120
N N G + Y
Sbjct: 102 RNAVNIFGLRPVDY 115
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
R+ +RT L VA G ++ L+ E+ + + D EG + A + I E L
Sbjct: 31 RDSYNRTPLMVACMLGMENAIDKLV---ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
LSKG++VN K+ G+T L ++ G+ ++ L+ GA +N ++ G T L + G S
Sbjct: 88 LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147
Query: 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
+ + L+E GA++ A D G T +A I +E
Sbjct: 148 EIVKKLLELGADISARDLTGLTAEASARIFGRQE 181
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
N D P+ A +G ++ L+ + K+ G TAL +A L I E L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
S+G+ +N+KD G T L G S + L+E GA V+ + G+TPL+ A
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVA 141
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN D G P+ + G + LL GA+VN +N G T L A+ G +IV+ L
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168
+ GA I+++D G TA G + ++ E
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%)
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167
N ++ RT L A G ++ L+ K+ KD G TAL + E L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 168 EEGAEVDATDKAGQTPLMNAVICYNKEFS 196
+G+ V+ D +G+TPLM ++I E S
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADV K+ G T LH AA G L++V+LL+ GA +N++DK G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 148 CTALHRGASTGNSALCELL 166
TA GN L E+L
Sbjct: 73 KTAFDISIDNGNEDLAEIL 91
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA + +KDK G T LH A G+ + +LL+E GA+V+A DK G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 181 QTPL 184
+T
Sbjct: 73 KTAF 76
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ A+V A D+ G P+H AA G++ +V++LL GADVN ++
Sbjct: 13 AARAGQDDEVRILMA--NGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 112 DGGRTALHYAASKGWLKIVELL 133
G+TA + G + E+L
Sbjct: 70 KFGKTAFDISIDNGNEDLAEIL 91
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
T LH+AA GH EVV++LL E+ VNA D+ G + GN + E+L
Sbjct: 41 TPLHLAARNGHLEVVKLLL---EAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 72 NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
N+VN DE G+ P+ A++ G + V LL GAD ++ +AL A++ G+ IV
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAEVDATDKAGQTPLMNAV-I 189
LL+ R IN D G T L A GN C E L+ GA++ +G TP+ AV +
Sbjct: 87 LLLERDVDINIYDWNGGTPLLY-AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
Query: 190 CYNK 193
Y K
Sbjct: 146 GYRK 149
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
L +A++ G+ ++V +LL D N+ D G P+ A +V VE LL++GAD+
Sbjct: 73 LSLASTGGYTDIVGLLLERDVDINIY---DWNGGTPLLYAVRGNHVKCVEALLARGADLT 129
Query: 109 LKNDGGRTALHYAASKGWLKIVELL 133
+ D G T + A + G+ K+ +++
Sbjct: 130 TEADSGYTPMDLAVALGYRKVQQVI 154
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 44 DDR--TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEML 100
D+R T L A++ G E V LL +++ E S AS G T IV +L
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESAL----SLASTGGYTDIVGLL 88
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L + D+N+ + G T L YA +K VE L++RGA + ++ G T + + G
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 161 ALCELL 166
+ +++
Sbjct: 149 KVQQVI 154
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 72 NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
N+VN DE G+ P+ A++ G + V LL GAD ++ +AL A++ G+ IV
Sbjct: 27 NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKDKVGCTALHRGASTGNSALC-ELLIEEGAEVDATDKAGQTPLMNAV-I 189
LL+ R IN D G T L A GN C E L+ GA++ +G TP+ AV +
Sbjct: 87 LLLERDVDINIYDWNGGTPLLY-AVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145
Query: 190 CYNK 193
Y K
Sbjct: 146 GYRK 149
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 44 DDR--TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEML 100
D+R T L A++ G E V LL +++ E S AS G T IV +L
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESAL----SLASTGGYTDIVGLL 88
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160
L + D+N+ + G T L YA +K VE L++RGA + ++ G T + + G
Sbjct: 89 LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR 148
Query: 161 ALCELL 166
+ +++
Sbjct: 149 KVQQVI 154
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
G +V+ ++ + D +L ND G TALH A G +IV+ L+ G +N+ D G T L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 152 HRGASTGNSALCELLIEEGAEVDA 175
H AS N +C+ L+E GA V A
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFA 131
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
ND+ T LH A GH E+V+ L+ + VNA D +GW P+H AAS NV + + L+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 102 SKGADV 107
GA V
Sbjct: 124 ESGAAV 129
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 60 VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
V I+ VD+ + ++EG +H+A G+ IV+ L+ G +VN + G T LH
Sbjct: 53 VQRIIYEVDDPS----LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 120 YAASKGWLKIVELLISRGAKI 140
AAS +++ + L+ GA +
Sbjct: 109 CAASCNNVQVCKFLVESGAAV 129
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 183
+G +V+ +I + + G TALH G++ + + L++ G V+A D G TP
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Query: 184 LMNAVICYN 192
L A C N
Sbjct: 107 LHCAASCNN 115
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
G +V+ ++ + D +L ND G TALH A G +IV+ L+ G +N+ D G T L
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPL 107
Query: 152 HRGASTGNSALCELLIEEGAEVDA 175
H AS N +C+ L+E GA V A
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFA 131
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
ND+ T LH A GH E+V+ L+ + VNA D +GW P+H AAS NV + + L+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 102 SKGADV 107
GA V
Sbjct: 124 ESGAAV 129
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 60 VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
V I+ VD+ + ++EG +H+A G+ IV+ L+ G +VN + G T LH
Sbjct: 53 VQRIIYEVDDPS----LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 120 YAASKGWLKIVELLISRGAKI 140
AAS +++ + L+ GA +
Sbjct: 109 CAASCNNVQVCKFLVESGAAV 129
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 101 LSKGADVNLKNDGGRTALHYAASK-------------GWLKIVELLISRGAKINSKDKVG 147
L G NL+ G H K G +V+ +I + + G
Sbjct: 11 LPPGKRTNLRKTGSERIAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG 70
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192
TALH G++ + + L++ G V+A D G TPL A C N
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%)
Query: 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
G++ V+ ++KG DVN +GGR LHYAA G L+I+E L+ +GA IN+ DK T L
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 72
Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
G+ + +LL+ +GA+ G T L
Sbjct: 73 LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN E G P+H AA G + I+E LL KGAD+N + T L A +G + V+LL
Sbjct: 28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 87
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+S+GA K G TAL +T N A+ LL
Sbjct: 88 LSKGADKTVKGPDGLTALE---ATDNQAIKALL 117
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
R LH AA CG E++E LL +NA D+ P+ SA G+V+ V++LLSKGA
Sbjct: 36 RKPLHYAADCGQLEILEFLLL---KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Query: 106 DVNLKNDGGRTAL 118
D +K G TAL
Sbjct: 93 DKTVKGPDGLTAL 105
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKA 179
+A G L V+ +++G +N + G LH A G + E L+ +GA+++A DK
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 180 GQTPLMNAV 188
TPL++AV
Sbjct: 68 HITPLLSAV 76
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%)
Query: 92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTAL 151
G++ V+ ++KG DVN +GGR LHYAA G L+I+E L+ +GA IN+ DK T L
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPL 77
Query: 152 HRGASTGNSALCELLIEEGAE 172
G+ + +LL+ +GA+
Sbjct: 78 LSAVYEGHVSCVKLLLSKGAD 98
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
VN E G P+H AA G + I+E LL KGAD+N + T L A +G + V+LL
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL 92
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+S+GA K G TA +T N A+ LL
Sbjct: 93 LSKGADKTVKGPDGLTAFE---ATDNQAIKALL 122
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
R LH AA CG E++E LL +NA D+ P+ SA G+V+ V++LLSKGA
Sbjct: 41 RKPLHYAADCGQLEILEFLLL---KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 106 DVNLKNDGGRTAL 118
D +K G TA
Sbjct: 98 DKTVKGPDGLTAF 110
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKA 179
+A G L V+ +++G +N + G LH A G + E L+ +GA+++A DK
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 180 GQTPLMNAV 188
TPL++AV
Sbjct: 73 HITPLLSAV 81
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
LL A +V EIL ++ V+ VD EG P++ A ++ I + L+ +GAD+
Sbjct: 9 LLEAANQRDTKKVKEIL---QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGNSALCELL 166
NL+N + YA ++G +I+ ++ +N ++ G AL A G+ +LL
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125
Query: 167 IEEGAE-VDATDKAGQTPLMNAV 188
+E+G E +D + G T L+ AV
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAV 148
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 52/87 (59%), Gaps = 7/87 (8%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI--GNVT---IVEMLLSKGAD 106
AA GH + V++LL ++ ++ ++ G+ + A + GN IV++L+ GAD
Sbjct: 113 AAEKGHIDNVKLLL--EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD 170
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELL 133
++K++ GRTA+ YA KG+ +I ++L
Sbjct: 171 QSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLK 110
A + G E++ +L + +N + G + AA G++ V++LL G D++ +
Sbjct: 79 AGAQGRTEILAYMLK--HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ 136
Query: 111 NDGGRTALHYA-----ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
ND G TAL A ++ + IV+LL+ GA + KD G TA+ G + + ++
Sbjct: 137 NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196
Query: 166 LIE 168
L +
Sbjct: 197 LAQ 199
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G V +L++ GADV K+ G T LH AA G L++V+LL+ GA + ++DK G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 148 CTALHRGASTGNSALCELL 166
TA GN L E+L
Sbjct: 91 KTAFDISIDNGNEDLAEIL 109
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG 180
AA G V +L++ GA + +KDK G T LH A G+ + +LL+E GA+V A DK G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 181 QTPL 184
+T
Sbjct: 91 KTAF 94
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 52 AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
AA G + V IL++ A+V A D+ G P+H AA G++ +V++LL GADV ++
Sbjct: 31 AARAGQDDEVRILMA--NGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 112 DGGRTALHYAASKGWLKIVELL 133
G+TA + G + E+L
Sbjct: 88 KFGKTAFDISIDNGNEDLAEIL 109
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
T LH+AA GH EVV++LL E+ V A D+ G + GN + E+L
Sbjct: 59 TPLHLAARNGHLEVVKLLL---EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
L+ RG+ + S +G L A G +L+ GA+V A DK G TPL
Sbjct: 13 LVPRGSHMGSD--LGKKLL-EAARAGQDDEVRILMANGADVAAKDKNGSTPL 61
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVG 147
AA G + +V+ + + D + N+ G TALH A IV+ LI+ GA +NS D G
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSS 200
T LH AS ++ +C L++ GA + AT + Y + ++ C++
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT 140
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
LL AA G EVV+ + + N + +EEG +H+A N +IV+ L++ GA+V
Sbjct: 24 LLLDAALTGELEVVQQAV---KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
N + G T LH AAS I L+ GA I
Sbjct: 81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
N+ D G P+H+A + + + ++LL ++ ++N + G T L AA +VE L
Sbjct: 78 NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLM 185
I+ A IN+ D G TALH A+ N+ +L+ A DA D +TPL
Sbjct: 138 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A + V +ILL A +NA +G P+ AA + +VE L++ A
Sbjct: 85 RTPLHAAVAADAMGVFQILLR--NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA 142
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
D+N ++ G+TALH+AA+ + V +L+ A +++D T L A G+ +
Sbjct: 143 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA 202
Query: 166 LIEEGAEVDATDKAGQTP 183
L++ A + TD + P
Sbjct: 203 LLDNFANREITDHMDRLP 220
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 59 EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118
+V+ LL+ + A + +D+ G +H AA + LL GAD N +++ GRT L
Sbjct: 31 QVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 88
Query: 119 HYAASKGWLKIVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
H A + + + ++L+ +R +N++ G T L A + E LI A+++A D
Sbjct: 89 HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD 148
Query: 178 KAGQTPLMNAVICYNKE 194
+G+T L A N E
Sbjct: 149 NSGKTALHWAAAVNNTE 165
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G+A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
DVN++++ G LH AA +G L++VE L+ A + ++ G TA G + +
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
L+ GA
Sbjct: 155 LMQANGA 161
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 80 EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
E W + SAA+ G++ + LL +VN +N GRTAL G +I L+ RGA
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+ KD+ G +H A G + L+E A+V+ D G PL
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G+A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
DVN++++ G LH AA +G L++VE L+ A + ++ G TA G + +
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
L+ GA
Sbjct: 155 LMQANGA 161
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 80 EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
E W + SAA+ G++ + LL +VN +N GRTAL G +I L+ RGA
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+ KD+ G +H A G + L+E A+V+ D G PL
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINS 142
P+H AA GN++ + L VN + G TAL++A G IVE L ++ ++N
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 143 KDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
++K+G TALH A G + + +LL+ +GA D
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVEL 132
VN +D+ G ++ A G+ IVE L ++ ++N +N G TALH AA KG+ IV+L
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 133 LISRGAKINSKD 144
L+++GA+ + ++
Sbjct: 159 LLAKGARTDLRN 170
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
T L+ A GH ++VE L + N+ +N ++ G +H+AA G IV++LL+KGA
Sbjct: 108 TALYWACHGGHKDIVEXLFT---QPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Query: 106 DVNLKN 111
+L+N
Sbjct: 165 RTDLRN 170
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G+A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
DVN++++ G LH AA +G L++VE L+ A + ++ G TA G + +
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
L+ GA
Sbjct: 155 LMQANGA 161
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 80 EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
E W + SAA+ G++ + LL +VN +N GRTAL G +I L+ RGA
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+ KD+ G +H A G + L+E A+V+ D G PL
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVEL 132
+ A + +G +H A + V++LL +GAD++ + GR+ L +A L +V+L
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
L+ GA +N++ G +ALH + G L L+ GA+ + TPLM A
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 42/153 (27%)
Query: 78 DEEGWAPIHSAASIGNVTIVEMLLS----KGADVNLKNDGGRTALHYAASKGWLKIVELL 133
DE+G P+H A GN+ V L++ G ++++ N+ +T LH A +V LL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 134 ISRGAK-------------------------------------INSKDKVGCTALHRGAS 156
++ GA + +++ G TALH +
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Query: 157 TGNSALCELLIEEGAEVDATD-KAGQTPLMNAV 188
T +LL+E GA++DA D K+G++PL++AV
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAV 158
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 60 VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
+V++LL ANV NA G + +HSA+ G + +V L+ GAD +LKN T L
Sbjct: 165 MVQLLL--QHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221
Query: 120 YAASKGWLKIVE 131
A S+ + I+
Sbjct: 222 VARSRRVIDILR 233
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT L V G+PE+ LL + ++ D G+A IH AA G + ++ LL A
Sbjct: 39 RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKVGCTALHRGASTGNSALCE 164
DVN++++ G LH AA +G L++VE L+ A + ++ G TA G + +
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 165 LLIEEGA 171
L+ GA
Sbjct: 155 LMQANGA 161
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 80 EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
E W + SAA+ G++ + LL +VN +N GRTAL G +I L+ RGA
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+ KD+ G +H A G + L+E A+V+ D G PL
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA 150
G+ I LL +GA N+++ G + +H AA G+L +++L+ GA +N D G
Sbjct: 45 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+H G++A+ L E +++ D G TPL
Sbjct: 105 IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPL 137
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
N D G +P+H AA G + +++L+ GADVN+ + G +H A +G +V L
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+ + ++ +D G T L G L ++L
Sbjct: 122 AE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 88 AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA+ G+V V LL + + N G+TAL G I L+ +GA N +D
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 67
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G + +H A TG ++L+E GA+V+ D G P+ AV
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA 150
G+ I LL +GA N+++ G + +H AA G+L +++L+ GA +N D G
Sbjct: 51 FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 110
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+H G++A+ L E +++ D G TPL
Sbjct: 111 IHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPL 143
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
N D G +P+H AA G + +++L+ GADVN+ + G +H A +G +V L
Sbjct: 68 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 127
Query: 135 SRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+ + ++ +D G T L G L ++L
Sbjct: 128 AE-SDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 88 AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA+ G+V V LL + + N G+TAL G I L+ +GA N +D
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 73
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G + +H A TG ++L+E GA+V+ D G P+ AV
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 115
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA 150
G+ + LL +GA N+++ G + +H AA G+L +++L+ GA +N+ D G
Sbjct: 53 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 112
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+H G+S++ L E +++ D +G TPL
Sbjct: 113 IHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPL 145
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 56 GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
G P V LL S NV +A G +P+H AA G + +++L+ GADVN + G
Sbjct: 54 GSPAVALELLKQGASPNVQDA---SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGS 110
Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+H A +G +V L + ++ +D G T L G L ++L
Sbjct: 111 LPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 88 AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA+ G+V V LL + + N G+TAL +ELL +GA N +D
Sbjct: 17 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELL-KQGASPNVQDAS 75
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G + +H A TG ++L+E GA+V+A D G P+ A+
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA 150
G+ + LL +GA N+++ G + +H AA G+L +++L+ GA +N+ D G
Sbjct: 51 FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP 110
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+H G+S++ L E +++ D +G TPL
Sbjct: 111 IHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPL 143
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 56 GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
G P V LL S NV +A G +P+H AA G + +++L+ GADVN + G
Sbjct: 52 GSPAVALELLKQGASPNVQDA---SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGS 108
Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
+H A +G +V L + ++ +D G T L G L ++L
Sbjct: 109 LPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 88 AASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV 146
AA+ G+V V LL + + N G+TAL +ELL +GA N +D
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSPAVALELL-KQGASPNVQDAS 73
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G + +H A TG ++L+E GA+V+A D G P+ A+
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA+ + LL AD N++++ GRT LH A S
Sbjct: 45 QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 129 IVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+ ++LI +R ++++ G T L A + E LI A+V+A D G++ L
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 7/148 (4%)
Query: 42 NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N DRT LH+AA+ + + LL AN+ D G P+H+A S + +
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 107
Query: 99 MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
+L+ ++ D++ + G T L AA ++E LI+ A +N+ D +G +ALH A+
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLM 185
N +L++ GA D + +TPL
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLF 195
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +IL+ A ++A +G P+ AA + ++E L++ A
Sbjct: 91 RTPLHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN +D G++ALH+AA+ + +L+ GA + ++ T L A G+ ++
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 166 LIEEGAEVDATDKAGQTP 183
L++ A D TD + P
Sbjct: 209 LLDHFANRDITDHMDRLP 226
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 14/97 (14%)
Query: 106 DVNLKNDGGRTALHYAA-SKGWLK------------IVELLISRGAKI-NSKDKVGCTAL 151
DVN++ G T L A+ S G L+ ++ I +GA + N D+ G TAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
H A+ S + L+E A+ + D G+TPL AV
Sbjct: 62 HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA + LL AD N++++ GRT LH A S
Sbjct: 45 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 129 IVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+ ++LI +R ++++ G T L A + E LI A+V+A D G++ L
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 42 NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N DRT LH+AA + + LL AN+ D G P+H+A S + +
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 107
Query: 99 MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
+L+ ++ D++ + G T L AA ++E LI+ A +N+ D +G +ALH A+
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLM 185
N +L++ GA D + +TPL
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLF 195
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +IL+ A ++A +G P+ AA + ++E L++ A
Sbjct: 91 RTPLHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN +D G++ALH+AA+ + +L+ GA + ++ T L A G+ ++
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208
Query: 166 LIEEGAEVDATDKAGQTP 183
L++ A D TD + P
Sbjct: 209 LLDHFANRDITDHMDRLP 226
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 106 DVNLKNDGGRTALHYAA-SKGWLK------------IVELLISRGAKI-NSKDKVGCTAL 151
DVN++ G T L A+ S G L+ ++ I +GA + N D+ G TAL
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
H A S + L+E A+ + D G+TPL AV
Sbjct: 62 HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA + LL AD N++++ GRT LH A S
Sbjct: 13 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 72
Query: 129 IVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+ ++LI +R ++++ G T L A + E LI A+V+A D G++ L
Sbjct: 73 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 129
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 42 NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N DRT LH+AA + + LL AN+ D G P+H+A S + +
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 75
Query: 99 MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
+L+ ++ D++ + G T L AA ++E LI+ A +N+ D +G +ALH A+
Sbjct: 76 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLM 185
N +L++ GA D + +TPL
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLF 163
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +IL+ A ++A +G P+ AA + ++E L++ A
Sbjct: 59 RTPLHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN +D G++ALH+AA+ + +L+ GA + ++ T L A G+ ++
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176
Query: 166 LIEEGAEVDATDKAGQTP 183
L++ A D TD + P
Sbjct: 177 LLDHFANRDITDHMDRLP 194
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 129 IVELLISRGAKI-NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
++ I +GA + N D+ G TALH A S + L+E A+ + D G+TPL A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 188 V 188
V
Sbjct: 66 V 66
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
+ A++ N D G +H AA + LL AD N++++ GRT LH A S
Sbjct: 46 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 105
Query: 129 IVELLI-SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+ ++LI +R ++++ G T L A + E LI A+V+A D G++ L
Sbjct: 106 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 162
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 42 NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N DRT LH+AA + + LL AN+ D G P+H+A S + +
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ---DNMGRTPLHAAVSADAQGVFQ 108
Query: 99 MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
+L+ ++ D++ + G T L AA ++E LI+ A +N+ D +G +ALH A+
Sbjct: 109 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 168
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLM 185
N +L++ GA D + +TPL
Sbjct: 169 NNVDAAVVLLKNGANKDMQNNREETPLF 196
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +IL+ A ++A +G P+ AA + ++E L++ A
Sbjct: 92 RTPLHAAVSADAQGVFQILIR--NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 149
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN +D G++ALH+AA+ + +L+ GA + ++ T L A G+ ++
Sbjct: 150 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 209
Query: 166 LIEEGAEVDATDKAGQTP 183
L++ A D TD + P
Sbjct: 210 LLDHFANRDITDHMDRLP 227
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 104 GADVNLKNDGGRTALHYAA-SKGWLK------------IVELLISRGAKI-NSKDKVGCT 149
G DVN++ G T L A+ S G L+ ++ I +GA + N D+ G T
Sbjct: 1 GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 150 ALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
ALH A S + L+E A+ + D G+TPL AV
Sbjct: 61 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Query: 42 NDDDRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
N DRT LH+AA + + LL A + D G P+H+A S + +
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQ---DNMGRTPLHAAVSADAQGVFQ 72
Query: 99 MLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157
+LL ++ D++ + G T L AA ++E LI+ A +N+ D +G +ALH A+
Sbjct: 73 ILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAV 132
Query: 158 GNSALCELLIEEGAEVDATDKAGQTPLM 185
N +L++ GA D + +TPL
Sbjct: 133 NNVDAAVVLLKNGANKDMQNNKEETPLF 160
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH A S V +ILL A ++A +G P+ AA + ++E L++ A
Sbjct: 56 RTPLHAAVSADAQGVFQILLR--NRATDLDARMHDGTTPLILAARLALEGMLEDLINSHA 113
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCEL 165
DVN +D G++ALH+AA+ + +L+ GA + ++ T L A G+ ++
Sbjct: 114 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKV 173
Query: 166 LIEEGAEVDATDKAGQTP 183
L++ A D TD + P
Sbjct: 174 LLDHFANRDITDHMDRLP 191
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 69 ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS---KG 125
+ A++ N D G +H AA + LL AD ++++ GRT LH A S +G
Sbjct: 10 QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQG 69
Query: 126 WLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+I LL +R ++++ G T L A + E LI A+V+A D G++ L
Sbjct: 70 VFQI--LLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSAL 126
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 129 IVELLISRGAKI-NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187
++ I +GA + N D+ G TALH A S + L+E A+ D G+TPL A
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 188 V 188
V
Sbjct: 63 V 63
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
P +AA + + LL DV+ ++ GRTAL + A G K V LL GA ++ +
Sbjct: 48 PWWTAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106
Query: 144 D-KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
D + G TALH A + E L+E GA+++ D+ G T L
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVEL 132
V+AVDE G + A +G+ V +L GAD++ ++ GG TALH AA ++VE
Sbjct: 70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 133 LISRGAKINSKDKVGCTALH 152
L+ GA I +D+ G TAL
Sbjct: 130 LVELGADIEVEDERGLTALE 149
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+++ RT L A G + V +L + A++ + G +H AA +VE L+
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLL--AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Query: 102 SKGADVNLKNDGGRTALHYA 121
GAD+ ++++ G TAL A
Sbjct: 132 ELGADIEVEDERGLTALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 70 SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
+A+VV+ + W +AA + + LL DV+ ++ GRTAL + A G K
Sbjct: 37 AADVVSEYETPWW----TAARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKC 91
Query: 130 VELLISRGAKINSKD-KVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
V LL GA ++ +D + G TALH A + E L+E GA+++ D+ G T L
Sbjct: 92 VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVEL 132
V+AVDE G + A +G+ V +L GAD++ ++ GG TALH AA ++VE
Sbjct: 69 VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 133 LISRGAKINSKDKVGCTALH 152
L+ GA I +D+ G TAL
Sbjct: 129 LVELGADIEVEDERGLTALE 148
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+++ RT L A G + V +L + A++ + G +H AA +VE L+
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLL--AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130
Query: 102 SKGADVNLKNDGGRTALHYA 121
GAD+ ++++ G TAL A
Sbjct: 131 ELGADIEVEDERGLTALELA 150
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 101 LSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
L+ GADVN N G T L A + L E L+ GA +N D G LH G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
++ L L ++ GA++ A D G+ PL A+ N +
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 56 GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
GHP + + VN V+ ++ P+ A + ++ E LL GA+VN +
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
GR LH+A G + L + RGA + ++D G L T N+ + LL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 101 LSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
L+ GADVN N G T L A + L E L+ GA +N D G LH G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
++ L L ++ GA++ A D G+ PL A+ N +
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 56 GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
GHP + + VN V+ ++ P+ A + ++ E LL GA+VN +
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
GR LH+A G + L + RGA + ++D G L T N+ + LL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 101 LSKGADVNLKNDG--GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158
L+ GADVN N G T L A + L E L+ GA +N D G LH G
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195
++ L L ++ GA++ A D G+ PL A+ N +
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 56 GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
GHP + + VN V+ ++ P+ A + ++ E LL GA+VN +
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166
GR LH+A G + L + RGA + ++D G L T N+ + LL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA 150
+GN I LL +GA+ +LK+ G +H AA G+L ++ L+ A +N +D G
Sbjct: 47 LGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 151 LHRGASTGNSALCELLIEEGA 171
LH A G+ + E L++ A
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTA 127
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 45 DRT---LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
DRT ++H AA G + ++ LL VN D EG P+H AA G++ +VE L+
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 102 SKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
A +V +N G TA A G ++V L+ + GA
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 80 EGWA-PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
E W + SAA+ G++ + LL +VN +N GRTAL G +I L+ RGA
Sbjct: 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61
Query: 139 KINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+ KD+ G +H A G + L+E A+V+ D G PL
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 55/127 (43%), Gaps = 15/127 (11%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE--EGWAPIHSAASIGNVTIVE 98
R T LH+AA + E +L+ E EG +H A NV +V
Sbjct: 33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 99 MLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLISRGAKINSKDK 145
LL++GA V+ + G G L +AA G +IV LLI GA I ++D
Sbjct: 93 ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152
Query: 146 VGCTALH 152
+G T LH
Sbjct: 153 LGNTVLH 159
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 53/176 (30%)
Query: 83 APIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLK------------- 128
+P+ AA +V + LL +G +V+ + G TALH AA L+
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 129 -------------------------IVELLISRGAKINSKD-------------KVGCTA 150
+V L++RGA ++++ G
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124
Query: 151 LHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS 206
L A G+ + LLIE GA++ A D G T L ++ NK F+ C N S
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFA-CQMYNLLLS 179
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
E P+H AA++ + IV++LL G D + +D G TAL+YA G + V+L + + +
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWR 120
Query: 140 INSKDKVGC-TALHRGASTGNSALCELLIEE 169
+ K G T+ + + ++ + E
Sbjct: 121 LXFYGKTGWKTSFYHAVXLNDVSIVSYFLSE 151
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
D G + + A + NV +V LL+ GA NL + LH AA+ KIV++L+ G
Sbjct: 28 DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLEN--EFPLHQAATLEDTKIVKILLFSG 85
Query: 138 AKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAG-QTPLMNAV 188
+ D G TAL+ +GN +L +++ + K G +T +AV
Sbjct: 86 LDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAV 137
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
W+P+H AA G+ + L+S+G VN+ + LH A G L V++L+ GA++N
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 142 SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD----------KAGQTPLMNAVICY 191
T L +G+ LL++ GA V + G +N++I Y
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAY 123
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
+PIH AA G+V V L++ G +++ K T L+ A V+ L+ GA +N
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN- 161
Query: 143 KDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+ K + LH A T + L LL++ GA+ A + G+ P+
Sbjct: 162 QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPV 203
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 8/148 (5%)
Query: 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH--SAASIGNVTIVEMLLS-- 102
T LH + S + VV+ LL D V+ + G++PI + A++ +E +L
Sbjct: 113 TALHYSVSHANFPVVQQLL--DSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLF 170
Query: 103 KGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161
+ ++N K + G+TAL A S G + +V+ L++ A +N +D G TAL G+
Sbjct: 171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKE 230
Query: 162 LCELLIE-EGAEVDATDKAGQTPLMNAV 188
+ LL+ ++ TD+ G T LM A+
Sbjct: 231 IAGLLLAVPSCDISLTDRDGSTALMVAL 258
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 61 VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
+E +L + N+ + G + A S G V +V+ LL+ ADVN+++D G TAL
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMC 222
Query: 121 AASKGWLKIVELLIS-RGAKINSKDKVGCTALHRGASTGNSALCELL 166
A G +I LL++ I+ D+ G TAL G S + +L
Sbjct: 223 ACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 56 GHPEVVEILLSVDESAN------VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA-DVN 108
HPE+V L + + VVN D G +H + S N +V+ LL G V+
Sbjct: 80 AHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVD 139
Query: 109 LKNDGGR-----TALHYAASKGWLKIVELLISRGAKINSK-DKVGCTALHRGASTGNSAL 162
+N G TAL ++ ++ V L + R IN+K + G TAL S G +
Sbjct: 140 KQNRAGYSPIMLTALATLKTQDDIETV-LQLFRLGNINAKASQAGQTALMLAVSHGRVDV 198
Query: 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSG 197
+ L+ A+V+ D G T LM A +KE +G
Sbjct: 199 VKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
++DD T L A GH E+ +LL+V ++ D +G + A G I ML
Sbjct: 212 QDDDGSTALMCACEHGHKEIAGLLLAVPSCD--ISLTDRDGSTALMVALDAGQSEIASML 269
Query: 101 LSK 103
S+
Sbjct: 270 YSR 272
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
W+P+H AA G+ + L+S+G VN+ + LH A G L V++L+ GA++N
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 142 SKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD----------KAGQTPLMNAVICY 191
T L +G+ LL++ GA V + G +N++I Y
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAY 179
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
+PIH AA G+V V L++ G +++ K T L+ A V+ L+ GA +N
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN- 217
Query: 143 KDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+ K + LH T + L LL++ GA+ A + G+ P+
Sbjct: 218 QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPV 259
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 80 EGWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
+G +H AA + N IV+ L+ KG++ + +++ G+T + AA +G +++V LI +GA
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 139 KINSKDKVGCTA 150
+ + D TA
Sbjct: 338 SVEAVDATDHTA 349
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 79/194 (40%), Gaps = 55/194 (28%)
Query: 45 DRTLLHVAASCGHPEVVEILLSVDESANV------VNAVDEEGWAPIHSAASIGNVTIVE 98
+RT+LH AS E E L+ V E+ VNA D + P+ A +V
Sbjct: 125 NRTVLHWIASNSSAEKSEDLI-VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 99 MLLSKGADVNLKNDGGRTALHYAAS----------------KG-----------WLKIV- 130
L GAD + N R+ALH AA+ KG L IV
Sbjct: 184 YLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVA 243
Query: 131 -----------ELLISRGAKI--------NSKDKVGCTALHRGASTGNSALCELLI-EEG 170
+LL+ +GAK+ +S+ G TALH A N + + L+ E+G
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKG 303
Query: 171 AEVDATDKAGQTPL 184
+ D D+ G+TP+
Sbjct: 304 SNKDKQDEDGKTPI 317
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
RT LH AA + +V+ L V E + + DE+G PI AA G + +V L+ +GA
Sbjct: 280 RTALHYAAQVSNXPIVKYL--VGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELL 133
V + TA A + IV++
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIVDIF 365
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVEL 132
+ A + +G P+H A + +V +L GAD+N GRT LH A ++EL
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
L+ GA ++ G T L N L LL GA
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIE 168
+N G T LH A ++V LL GA +N + G T LH +++ ELL++
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 169 EGAEVDATDKAGQTPLMNAVICYNK 193
GA+ A G+TPL +A++ N
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNP 238
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
+D T LH+A H ++ LL ++ ++ G +H AA +G + VE L +
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 103 KGADVNLKNDGGRTALHYA 121
GA V + GG TALH A
Sbjct: 67 AGAGVLVAERGGHTALHLA 85
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LHVA E+V +L D A++ G P+H A +++E+LL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
GAD + GGRT L A + + LL + GA
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 73 VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWLKI 129
V V E+G +H A + ++ LL A ++L+ND G+TALH AA G
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 130 VELLISRGAKINSKDKVGCTALH 152
VE L + GA + ++ G TALH
Sbjct: 61 VEKLYAAGAGVLVAERGGHTALH 83
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 114 GRTALHYAASKGWLKIVELLISRGA---KINSKDKVGCTALHRGASTGNSALCELLIEEG 170
G TALH A ++ L+ A ++ ++ +G TALH A G ++ E L G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 171 AEVDATDKAGQTPL 184
A V ++ G T L
Sbjct: 69 AGVLVAERGGHTAL 82
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVEL 132
+ A + +G P+H A + +V +L GAD+N GRT LH A ++EL
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 133 LISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171
L+ GA ++ G T L N L LL GA
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIE 168
+N G T LH A ++V LL GA +N + G T LH +++ ELL++
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 169 EGAEVDATDKAGQTPLMNAVICYNK 193
GA+ A G+TPL +A++ N
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNP 238
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
+D T LH+A H ++ LL ++ ++ G +H AA +G + VE L +
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66
Query: 103 KGADVNLKNDGGRTALHYA 121
GA V + GG TALH A
Sbjct: 67 AGAGVLVAERGGHTALHLA 85
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
N D T LHVA E+V +L D A++ G P+H A +++E+LL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
GAD + GGRT L A + + LL + GA
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 73 VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWLKI 129
V V E+G +H A + ++ LL A ++L+ND G+TALH AA G
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 130 VELLISRGAKINSKDKVGCTALH 152
VE L + GA + ++ G TALH
Sbjct: 61 VEKLYAAGAGVLVAERGGHTALH 83
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 114 GRTALHYAASKGWLKIVELLISRGA---KINSKDKVGCTALHRGASTGNSALCELLIEEG 170
G TALH A ++ L+ A ++ ++ +G TALH A G ++ E L G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68
Query: 171 AEVDATDKAGQTPL 184
A V ++ G T L
Sbjct: 69 AGVLVAERGGHTAL 82
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%)
Query: 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
++A +G P+ AA + ++E L++ ADVN +D G++ALH+AA+ + +L
Sbjct: 8 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 67
Query: 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTP 183
+ GA + ++ T L A G+ ++L++ A D TD + P
Sbjct: 68 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 117
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159
L ++ D++ + G T L AA ++E LI+ A +N+ D +G +ALH A+ N
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 160 SALCELLIEEGAEVDATDKAGQTPLM 185
+L++ GA D + +TPL
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLF 86
>pdb|3T8K|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
pdb|3T8K|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Lebu_0176 From Leptotrichia Buccalis C-1013-B
Length = 186
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN---LKNDGGRTALHYAASKGWLKIVE 131
NA E + + +AA +G L KG + LK++ L + KI
Sbjct: 2 NAXSE--YRTVSAAAXLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISX 59
Query: 132 LLISRGAKINSKDKVGCT---ALHRGAS---TGNSALCELLIEEGAEVDATDKAGQTPLM 185
LI++GA I S+ K G T L +G TG + LC++ +E+GA++ A K + +
Sbjct: 60 FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119
Query: 186 NAVICY 191
+ Y
Sbjct: 120 KNIFNY 125
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 116 TALHYAAS---KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172
TALH A + L IV+ L+ ++ + G TALH T N+ +LL+ A
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 173 VDATDKAGQTPL 184
++ +++G+TPL
Sbjct: 231 IEIANESGETPL 242
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 25/122 (20%)
Query: 56 GHPEVVEILLSV----DESANVVNAVDEE----GWAPIHSAASIGNVTIVEMLLSKGADV 107
G + + +LL V D VNA + G +H A N T+V +L+ GADV
Sbjct: 68 GQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADV 127
Query: 108 N-------LKNDGGRTALHY-------AASKGWLKIVELLIS---RGAKINSKDKVGCTA 150
K GR ++ AA L IV+ L+ + A I+++D VG T
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187
Query: 151 LH 152
LH
Sbjct: 188 LH 189
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 147 GCTALHRGASTGNSALCELLIEEGAEVDA 175
G TALH N L LL+E GA+V A
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQA 129
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
L AA+ G E V LL E+ + NA + G PI +G+ + E+LL GA+ N
Sbjct: 16 LATAAARGRVEEVRALL---EAGALPNAPNSYGRRPIQ-VMMMGSARVAELLLLHGAEPN 71
Query: 109 LKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDKVG 147
+ T +H AA +G+L + +L GA+++ +D G
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
L AA++G ++ V L+ GA N+ + G + G++ + ELL+ GAE + D
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 178 KAGQT 182
A T
Sbjct: 75 PATLT 79
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 71 ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA 122
AN++NA D G ++ AA +GN++IV+ LL GAD + N G + + A
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 76 AVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
VDE G P+H SI N+ +V+ L+ G++
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSN 156
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 140 INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184
+N++D G T L+ A GN ++ + L++ GA+ +K+G P+
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 69/176 (39%), Gaps = 28/176 (15%)
Query: 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
+D++ +HVAA G + V L+ S + N G +H A G V + L
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRF---GCTALHLACKFGCVDTAKYLA 73
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLIS----RGAKINS--------------- 142
S G +L + G+ +H A +V L+ RG S
Sbjct: 74 SVGEVHSLWH--GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGS 131
Query: 143 --KDKVGCTALHRGASTGNSAL--CELLIEEGAEVDATDKAGQTPLMNAVICYNKE 194
K G TALH G L ++L++ GA A DKA +TPL A N+E
Sbjct: 132 HVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNRE 187
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
L AA+ G E V LL + N N+ G PI +G+ + E+LL GA+ N
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSY---GRRPIQ-VMMMGSARVAELLLLHGAEPN 71
Query: 109 LKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDKVG 147
+ T +H AA +G+L + +L GA+++ +D G
Sbjct: 72 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG 111
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
L AA++G ++ V L+ GA N+ + G + G++ + ELL+ GAE + D
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV-MMMGSARVAELLLLHGAEPNCAD 74
Query: 178 KAGQT 182
A T
Sbjct: 75 PATLT 79
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 85 IHSAASIGN---VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
+H A + N + +V+ ++ G ++ K G TALHYAA ++LL+ A +
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 142 SKDKVGCTALHRGASTGNSALCELLIEE 169
+ ++ G TAL A + CE L+E+
Sbjct: 235 TVNEAGETALDI-ARKKHHKECEELLEQ 261
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 118 LHYA---ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
LH A A++ L +V+ +I G +++K G TALH A +LL++ A V
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 234
Query: 175 ATDKAGQTPLMNAVICYNKE 194
++AG+T L A ++KE
Sbjct: 235 TVNEAGETALDIARKKHHKE 254
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
+LH+A + + ++ + ++ ++A +G +H AA +++LL A V
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALV 233
Query: 108 NLKNDGGRTALHYAASKGWLKIVELL 133
N+ G TAL A K + ELL
Sbjct: 234 GTVNEAGETALDIARKKHHKECEELL 259
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 85 IHSAASIGN---VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
+H A + N + +V+ ++ G ++ K G TALHYAA ++LL+ A +
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 142 SKDKVGCTALHRGASTGNSALCELLIEE 169
+ ++ G TAL A + CE L+E+
Sbjct: 254 TVNEAGETALDI-ARKKHHKECEELLEQ 280
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 118 LHYA---ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD 174
LH A A++ L +V+ +I G +++K G TALH A +LL++ A V
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 175 ATDKAGQTPLMNAVICYNKE 194
++AG+T L A ++KE
Sbjct: 254 TVNEAGETALDIARKKHHKE 273
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 46/124 (37%), Gaps = 25/124 (20%)
Query: 54 SCGHPEVVEILLSVDESA----NVVNA----VDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
S G + + ILL + E +N+ V G +H A VE+L+ KGA
Sbjct: 58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA 117
Query: 106 DVNLKNDG--------------GRTALHYAASKGWLKIVELLISRGAK---INSKDKVGC 148
DV+ + G G L AA IV L G K + +D G
Sbjct: 118 DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGN 177
Query: 149 TALH 152
T LH
Sbjct: 178 TVLH 181
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 22/114 (19%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK-- 145
A GN+ E + S DV + G+TALH A + VELL+ +GA ++++ +
Sbjct: 72 AEKTGNMR--EFINSPFRDVYYR---GQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126
Query: 146 ------------VGCTALHRGASTGNSALCELLIEEG---AEVDATDKAGQTPL 184
G L A T + L E G A++ D G T L
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177
L AA++G ++ V L+ GA N+ ++ G + G++ + ELL+ GAE + D
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQV-MMMGSAQVAELLLLHGAEPNCAD 74
Query: 178 KA 179
A
Sbjct: 75 PA 76
>pdb|2DI3|A Chain A, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
pdb|2DI3|B Chain B, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
Length = 239
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 80 EGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
EGWA +HS+A G+ + E LL K D +L
Sbjct: 106 EGWAALHSSAERGDWDVAEALLEKMDDPSL 135
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
A GN+ E + S D+ + G+TALH A + VELL+++GA ++++ +
Sbjct: 70 AERTGNMR--EFINSPFRDIYYR---GQTALHIAIERRCKHYVELLVAQGADVHAQAR 122
>pdb|4E5U|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Thymidine
Monophosphate.
pdb|4E5U|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Thymidine
Monophosphate
Length = 213
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G ST L E L E G EV T + G TPL +
Sbjct: 18 GKSTNRDYLAERLRERGIEVQLTREPGGTPLAERI 52
>pdb|3UWO|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UWO|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 220
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G ST L E L E G EV T + G TPL +
Sbjct: 23 GKSTNRDYLAERLRERGIEVQLTREPGGTPLAERI 57
>pdb|3UWK|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UWK|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 232
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G ST L E L E G EV T + G TPL +
Sbjct: 35 GKSTNRDYLAERLRERGIEVQLTREPGGTPLAERI 69
>pdb|4EDH|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And
Mg.
pdb|4EDH|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And
Mg.
pdb|4ESH|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With
Deoxythymidine.
pdb|4GMD|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|C Chain C, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|D Chain D, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
Length = 213
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G ST L E L E G EV T + G TPL +
Sbjct: 18 GKSTNRDYLAERLRERGIEVQLTREPGGTPLAERI 52
>pdb|3UXM|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|C Chain C, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|D Chain D, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 211
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAV 188
G ST L E L E G EV T + G TPL +
Sbjct: 14 GKSTNRDYLAERLRERGIEVQLTREPGGTPLAERI 48
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSK 143
G +ALH A K L+ V+LL+ GA ++++
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHAR 124
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSK------DKVGCTALHRGASTGNSALC---- 163
G +ALH A K L+ V+LL+ GA ++ + K T + G + A C
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 164 ---ELLIE---EGAEVDATDKAGQTPLMNAVI 189
L+E + A ++ATD G T L V+
Sbjct: 163 DVVTYLLENPHQPASLEATDSLGNTVLHALVM 194
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSK------DKVGCTALHRGASTGNSALC---- 163
G +ALH A K L+ V+LL+ GA ++ + K T + G + A C
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 164 ---ELLIE---EGAEVDATDKAGQTPLMNAVI 189
L+E + A ++ATD G T L V+
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVM 181
>pdb|1S14|A Chain A, Crystal Structure Of Escherichia Coli Topoisomerase Iv
Pare 24kda Subunit
pdb|1S14|B Chain B, Crystal Structure Of Escherichia Coli Topoisomerase Iv
Pare 24kda Subunit
Length = 194
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 53 ASCGHPEVVEILLSVDESANVVNAVDEEGWA-PIHSAASIGNVTIVEML-----LSKGAD 106
A GH + V+++L D+S V++ D G IH + V ++ + LSK +
Sbjct: 47 ALAGHAKRVDVILHADQSLEVID--DGRGMPVDIHPEEGVPAVELILCISVVNALSKRVE 104
Query: 107 VNLKNDG 113
VN++ DG
Sbjct: 105 VNVRRDG 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,520,556
Number of Sequences: 62578
Number of extensions: 197874
Number of successful extensions: 1179
Number of sequences better than 100.0: 135
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 451
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)