Query 028517
Match_columns 208
No_of_seqs 143 out of 2325
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 21:17:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oy3_D Transcription factor in 100.0 3.2E-41 1.1E-45 249.4 20.4 201 3-206 2-251 (282)
2 3b7b_A Euchromatic histone-lys 100.0 1.6E-40 5.6E-45 240.1 22.0 201 1-206 2-203 (237)
3 1yyh_A HN1;, notch 1, ankyrin 100.0 1.7E-41 5.9E-46 247.7 17.0 195 7-205 54-248 (253)
4 2f8y_A Notch homolog 1, transl 100.0 2.2E-40 7.6E-45 237.3 21.9 196 7-206 22-217 (223)
5 1yyh_A HN1;, notch 1, ankyrin 100.0 1.4E-40 4.9E-45 242.8 19.4 188 15-206 28-216 (253)
6 2rfa_A Transient receptor pote 100.0 1.5E-40 5.2E-45 239.6 18.9 196 9-205 2-222 (232)
7 3aji_A 26S proteasome non-ATPa 100.0 1E-39 3.5E-44 235.0 21.6 193 9-205 5-197 (231)
8 2dzn_A Probable 26S proteasome 100.0 9.3E-40 3.2E-44 234.8 21.3 194 10-204 2-199 (228)
9 3aji_A 26S proteasome non-ATPa 100.0 2E-40 6.9E-45 238.7 17.5 198 3-205 33-230 (231)
10 1k1a_A B-cell lymphoma 3-encod 100.0 1E-39 3.5E-44 236.3 21.1 199 4-205 3-208 (241)
11 3hra_A Ankyrin repeat family p 100.0 1.1E-39 3.7E-44 230.2 19.7 192 8-203 3-201 (201)
12 1k1a_A B-cell lymphoma 3-encod 100.0 5.4E-40 1.8E-44 237.8 17.2 201 2-204 38-240 (241)
13 2xai_A ASB-9, ankyrin repeat a 100.0 4.2E-39 1.4E-43 236.1 20.1 190 9-205 2-191 (261)
14 1ikn_D Protein (I-kappa-B-alph 100.0 6.2E-41 2.1E-45 242.3 9.6 199 4-205 2-209 (236)
15 3d9h_A CDNA FLJ77766, highly s 100.0 6.9E-39 2.4E-43 237.8 20.6 197 3-206 52-248 (285)
16 3ljn_A Hypothetical protein; a 100.0 1.5E-39 5.1E-44 249.0 16.7 199 4-204 14-268 (364)
17 3utm_A Tankyrase-1; tankyrase, 100.0 1.7E-38 5.8E-43 241.4 21.6 200 2-206 50-306 (351)
18 2etb_A Transient receptor pote 100.0 1.2E-39 4E-44 238.3 14.0 194 10-205 2-246 (256)
19 1wdy_A 2-5A-dependent ribonucl 100.0 3.6E-38 1.2E-42 233.1 21.8 205 2-208 64-281 (285)
20 3kea_A K1L; tropism, ANK repea 100.0 2.4E-39 8.2E-44 240.2 14.6 198 2-207 23-222 (285)
21 2fo1_E LIN-12 protein; beta-ba 100.0 9.7E-39 3.3E-43 245.3 18.2 202 2-205 158-371 (373)
22 4b93_B Ankyrin repeat domain-c 100.0 1.7E-39 5.7E-44 239.0 12.4 195 4-203 46-242 (269)
23 2pnn_A Transient receptor pote 100.0 3.2E-39 1.1E-43 238.1 13.3 201 4-204 7-257 (273)
24 3b7b_A Euchromatic histone-lys 100.0 2.7E-38 9.4E-43 228.4 17.9 195 2-200 36-230 (237)
25 3eu9_A Huntingtin-interacting 100.0 4.5E-38 1.5E-42 227.3 19.0 201 3-207 35-237 (240)
26 4gpm_A Engineered protein OR26 100.0 4.2E-38 1.4E-42 216.0 17.7 157 13-174 7-163 (169)
27 2xai_A ASB-9, ankyrin repeat a 100.0 6.1E-38 2.1E-42 229.9 18.9 194 2-204 28-221 (261)
28 2dzn_A Probable 26S proteasome 100.0 5.1E-38 1.7E-42 225.7 18.1 194 5-202 31-227 (228)
29 4b93_B Ankyrin repeat domain-c 100.0 8.2E-39 2.8E-43 235.3 14.2 199 5-206 6-211 (269)
30 1n11_A Ankyrin; clathrin, BAND 100.0 1.3E-37 4.6E-42 243.4 20.4 199 2-205 6-204 (437)
31 4gpm_A Engineered protein OR26 100.0 2.6E-37 8.9E-42 212.1 19.4 157 47-206 6-162 (169)
32 3d9h_A CDNA FLJ77766, highly s 100.0 9.6E-38 3.3E-42 231.6 18.1 193 2-203 84-276 (285)
33 1n11_A Ankyrin; clathrin, BAND 100.0 1.9E-37 6.5E-42 242.6 20.4 197 4-205 173-369 (437)
34 3jxi_A Vanilloid receptor-rela 100.0 9.6E-39 3.3E-43 233.9 11.7 199 7-205 2-250 (260)
35 1wdy_A 2-5A-dependent ribonucl 100.0 7E-37 2.4E-41 226.2 21.7 190 7-201 36-240 (285)
36 1oy3_D Transcription factor in 100.0 3.8E-37 1.3E-41 227.6 19.3 188 3-192 38-270 (282)
37 3eu9_A Huntingtin-interacting 100.0 6.1E-37 2.1E-41 221.3 19.1 199 3-205 2-202 (240)
38 1s70_B 130 kDa myosin-binding 100.0 1.4E-37 4.9E-42 231.9 15.6 194 7-205 37-257 (299)
39 2fo1_E LIN-12 protein; beta-ba 100.0 1.4E-37 4.8E-42 238.8 15.0 202 2-206 116-339 (373)
40 4hbd_A KN motif and ankyrin re 100.0 2.2E-37 7.5E-42 228.7 14.4 194 10-205 76-275 (276)
41 3utm_A Tankyrase-1; tankyrase, 100.0 6.2E-37 2.1E-41 232.8 17.3 199 5-207 19-274 (351)
42 2rfm_A Putative ankyrin repeat 100.0 1.9E-36 6.4E-41 212.3 15.7 165 36-203 26-190 (192)
43 4g8k_A 2-5A-dependent ribonucl 100.0 1.7E-35 5.8E-40 224.3 20.9 206 2-207 50-300 (337)
44 2f8y_A Notch homolog 1, transl 100.0 2.1E-36 7.3E-41 216.6 13.8 180 21-205 2-183 (223)
45 3v31_A Ankyrin repeat family A 100.0 2.3E-35 7.9E-40 202.3 16.0 157 44-203 2-158 (167)
46 3v30_A DNA-binding protein rfx 100.0 3E-35 1E-39 202.7 15.9 169 11-183 3-171 (172)
47 2y1l_E Darpin-8.4; hydrolase-i 100.0 5.6E-35 1.9E-39 200.8 16.7 160 41-203 10-169 (169)
48 3v30_A DNA-binding protein rfx 100.0 7.6E-35 2.6E-39 200.7 15.6 158 45-204 2-159 (172)
49 1ihb_A P18-INK4C(INK6), cyclin 100.0 6.7E-35 2.3E-39 199.0 15.1 157 44-204 4-161 (162)
50 1s70_B 130 kDa myosin-binding 100.0 1.4E-35 4.9E-40 221.1 12.0 183 2-189 65-274 (299)
51 4g8k_A 2-5A-dependent ribonucl 100.0 2.5E-34 8.5E-39 217.9 18.9 197 2-206 117-327 (337)
52 1ikn_D Protein (I-kappa-B-alph 100.0 3.6E-35 1.2E-39 212.1 12.2 187 2-190 37-229 (236)
53 3twr_A Tankyrase-2; ankyrin re 100.0 7.7E-35 2.6E-39 199.3 12.7 161 41-204 4-164 (165)
54 1awc_B Protein (GA binding pro 100.0 3.3E-34 1.1E-38 193.9 15.7 151 45-199 2-152 (153)
55 2rfm_A Putative ankyrin repeat 100.0 9.5E-34 3.3E-38 198.5 18.1 163 3-170 28-190 (192)
56 3kea_A K1L; tropism, ANK repea 100.0 5E-35 1.7E-39 217.0 10.9 188 4-204 56-245 (285)
57 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.6E-33 5.5E-38 192.1 16.0 158 9-172 4-162 (162)
58 2y1l_E Darpin-8.4; hydrolase-i 100.0 5.3E-33 1.8E-37 191.0 18.7 158 8-170 12-169 (169)
59 3f6q_A Integrin-linked protein 100.0 1.8E-33 6.2E-38 195.0 16.1 168 9-180 4-171 (179)
60 3v31_A Ankyrin repeat family A 100.0 2.8E-33 9.5E-38 191.9 16.8 160 9-173 2-161 (167)
61 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.7E-33 5.9E-38 190.9 15.5 154 45-202 2-155 (156)
62 1sw6_A Regulatory protein SWI6 100.0 2.4E-34 8.3E-39 217.2 12.3 178 2-191 122-327 (327)
63 3f6q_A Integrin-linked protein 100.0 1E-33 3.4E-38 196.3 13.5 161 43-205 3-163 (179)
64 3twr_A Tankyrase-2; ankyrin re 100.0 2.3E-33 7.8E-38 192.0 14.6 162 5-171 3-164 (165)
65 3ljn_A Hypothetical protein; a 100.0 1.3E-34 4.3E-39 221.7 9.0 160 41-203 134-312 (364)
66 2rfa_A Transient receptor pote 100.0 9.9E-33 3.4E-37 198.7 18.3 176 2-177 29-227 (232)
67 3hra_A Ankyrin repeat family p 100.0 1.5E-32 5.1E-37 193.6 18.8 165 2-170 31-201 (201)
68 1awc_B Protein (GA binding pro 100.0 6.2E-32 2.1E-36 182.7 18.5 151 10-166 2-152 (153)
69 2pnn_A Transient receptor pote 100.0 1.5E-32 5.1E-37 202.4 16.4 176 6-184 50-271 (273)
70 1bd8_A P19INK4D CDK4/6 inhibit 100.0 5.1E-32 1.7E-36 183.6 17.1 154 10-169 2-155 (156)
71 2vge_A RELA-associated inhibit 100.0 2.6E-35 8.7E-40 211.9 -1.4 189 4-200 15-208 (229)
72 2etb_A Transient receptor pote 100.0 5.7E-32 1.9E-36 197.5 16.1 165 6-173 39-247 (256)
73 4hbd_A KN motif and ankyrin re 100.0 9.6E-32 3.3E-36 198.5 16.1 164 3-170 104-273 (276)
74 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.2E-32 4E-37 199.4 8.5 188 7-202 2-201 (239)
75 3jxi_A Vanilloid receptor-rela 100.0 1.9E-31 6.5E-36 195.1 14.9 165 8-175 44-253 (260)
76 1ycs_B 53BP2, P53BP2; ankyrin 100.0 6.4E-32 2.2E-36 195.5 9.9 160 42-205 2-164 (239)
77 1bi7_B P16INK4A, MTS1, multipl 100.0 1.1E-30 3.9E-35 177.1 12.3 145 39-187 6-151 (156)
78 1d9s_A Cyclin-dependent kinase 100.0 4.7E-30 1.6E-34 170.1 13.3 130 38-171 5-135 (136)
79 1sw6_A Regulatory protein SWI6 100.0 2.1E-31 7.3E-36 201.1 7.1 179 15-206 102-309 (327)
80 1d9s_A Cyclin-dependent kinase 100.0 1.5E-30 5E-35 172.6 10.3 130 74-204 5-135 (136)
81 3t8k_A Uncharacterized protein 100.0 5.6E-31 1.9E-35 183.3 7.8 152 45-201 6-175 (186)
82 2jab_A H10-2-G3; HER2, darpin, 100.0 3E-29 1E-33 166.2 12.0 124 79-202 12-135 (136)
83 1n0r_A 4ANK, 4 ankyrin repeats 100.0 5.3E-29 1.8E-33 162.6 13.0 125 45-172 2-126 (126)
84 1n0r_A 4ANK, 4 ankyrin repeats 100.0 2.6E-28 8.8E-33 159.3 15.8 125 80-204 1-125 (126)
85 3t8k_A Uncharacterized protein 100.0 3.3E-30 1.1E-34 179.4 6.8 160 9-175 5-182 (186)
86 2vge_A RELA-associated inhibit 100.0 2.9E-30 1E-34 185.5 6.3 172 27-204 2-177 (229)
87 1bi7_B P16INK4A, MTS1, multipl 100.0 5.7E-29 2E-33 168.6 9.8 131 75-206 6-137 (156)
88 2jab_A H10-2-G3; HER2, darpin, 100.0 7.1E-28 2.4E-32 159.6 14.6 126 42-170 11-136 (136)
89 3c5r_A BARD-1, BRCA1-associate 100.0 9.6E-29 3.3E-33 164.0 9.8 130 76-205 5-134 (137)
90 2aja_A Ankyrin repeat family p 100.0 3.8E-31 1.3E-35 202.3 -2.8 189 8-204 90-343 (376)
91 2aja_A Ankyrin repeat family p 100.0 7.3E-31 2.5E-35 200.7 -2.7 178 11-205 66-250 (376)
92 3aaa_C Myotrophin, protein V-1 99.9 2.2E-27 7.7E-32 154.5 10.2 117 79-195 5-121 (123)
93 2b0o_E UPLC1; arfgap, structur 99.9 9.7E-27 3.3E-31 173.5 14.4 142 45-192 151-298 (301)
94 3c5r_A BARD-1, BRCA1-associate 99.9 2.4E-27 8.1E-32 157.2 9.1 128 40-170 5-132 (137)
95 3deo_A Signal recognition part 99.9 4.2E-27 1.4E-31 163.5 10.7 140 42-202 41-181 (183)
96 3ui2_A Signal recognition part 99.9 6.5E-27 2.2E-31 169.7 10.6 137 44-201 44-181 (244)
97 3ehr_A Osteoclast-stimulating 99.9 4.6E-27 1.6E-31 168.1 8.0 126 79-204 71-197 (222)
98 3ehr_A Osteoclast-stimulating 99.9 8E-27 2.7E-31 166.8 8.7 137 42-181 70-207 (222)
99 3aaa_C Myotrophin, protein V-1 99.9 1.1E-25 3.7E-30 146.5 10.8 117 42-161 4-120 (123)
100 3deo_A Signal recognition part 99.9 1.1E-25 3.9E-30 156.3 11.6 124 78-202 41-165 (183)
101 3ui2_A Signal recognition part 99.9 2.4E-25 8.3E-30 161.4 11.4 142 8-172 43-185 (244)
102 2b0o_E UPLC1; arfgap, structur 99.9 3.1E-25 1E-29 165.4 11.9 140 10-160 151-299 (301)
103 1dcq_A PYK2-associated protein 99.9 1.9E-24 6.4E-29 159.5 15.7 124 82-205 131-263 (278)
104 3lvq_E ARF-GAP with SH3 domain 99.9 4.2E-24 1.4E-28 169.6 16.6 133 44-176 131-269 (497)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.1E-23 3.6E-28 130.3 12.3 92 81-172 2-93 (93)
106 3jue_A Arfgap with coiled-coil 99.9 8E-24 2.7E-28 161.3 14.1 145 43-190 197-347 (368)
107 3jue_A Arfgap with coiled-coil 99.9 4.8E-24 1.6E-28 162.6 12.5 124 80-203 198-324 (368)
108 3lvq_E ARF-GAP with SH3 domain 99.9 9.2E-24 3.2E-28 167.6 14.0 126 81-206 132-266 (497)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.8E-24 1.6E-28 131.9 9.1 92 113-204 1-92 (93)
110 1dcq_A PYK2-associated protein 99.9 6.3E-23 2.1E-27 151.3 15.7 127 47-173 132-264 (278)
111 2l6b_A NR1C; ankyrin, consensu 99.9 4.7E-24 1.6E-28 137.1 8.0 108 77-184 5-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.9 6.1E-23 2.1E-27 131.8 8.6 109 40-151 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 7.3E-21 2.5E-25 121.1 8.6 89 111-199 21-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 5.3E-20 1.8E-24 117.1 10.9 93 74-166 17-109 (110)
115 1gp8_A Protein (scaffolding pr 77.8 1.8 6.1E-05 20.7 2.0 19 12-30 15-33 (40)
116 4g26_A Pentatricopeptide repea 63.5 16 0.00056 28.8 6.0 154 11-174 30-209 (501)
117 3mkq_B Coatomer subunit alpha; 61.3 34 0.0012 22.9 8.8 133 9-169 7-140 (177)
118 3qil_A Clathrin heavy chain 1; 36.6 23 0.00077 22.1 2.2 32 2-33 27-58 (125)
119 3k49_A MRNA-binding protein PU 32.5 1.1E+02 0.0038 22.9 5.9 125 10-135 150-285 (369)
120 3gvo_A Pumilio 2, pumilio homo 32.4 50 0.0017 24.6 4.0 24 144-167 214-237 (351)
121 3zrh_A Ubiquitin thioesterase 27.5 1.8E+02 0.0062 22.5 6.1 22 114-135 69-90 (454)
122 3zrh_A Ubiquitin thioesterase 26.0 1.9E+02 0.0064 22.5 5.9 63 88-169 29-91 (454)
123 3gvo_A Pumilio 2, pumilio homo 23.7 14 0.00047 27.6 -0.5 181 14-195 41-232 (351)
No 1
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.2e-41 Score=249.43 Aligned_cols=201 Identities=26% Similarity=0.280 Sum_probs=184.8
Q ss_pred cccccccCcHHHHHHHHcCChHHHHHHHHHhhhh-hccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (208)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (208)
++..+..|.++||.|++.|+.+++++|++.+... .++..+..|.||||+|+..|+.+++++|++.|.+ ++..+..|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g 78 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG---VLVAERGG 78 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTS
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCC
Confidence 4678899999999999999999999999877421 2677889999999999999999999999998877 56778899
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCCC-----------------------------------------------CCCCCCCC
Q 028517 82 WAPIHSAASIGNVTIVEMLLSKGAD-----------------------------------------------VNLKNDGG 114 (208)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~Ll~~~~~-----------------------------------------------~~~~~~~~ 114 (208)
.||||+|+..|+.+++++|+++++. ++.++..|
T Consensus 79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (282)
T 1oy3_D 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158 (282)
T ss_dssp CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence 9999999999999999999998755 56678899
Q ss_pred chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCc
Q 028517 115 RTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNK 193 (208)
Q Consensus 115 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~ 193 (208)
.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus 159 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~ 238 (282)
T 1oy3_D 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCc
Confidence 99999999999999999999999999988854 99999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccc
Q 028517 194 EFSGCSSSNKTWS 206 (208)
Q Consensus 194 ~~~~~l~~~~~~~ 206 (208)
+++++|+++++..
T Consensus 239 ~~v~~Ll~~ga~~ 251 (282)
T 1oy3_D 239 ILARLLRAHGAPE 251 (282)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCc
Confidence 9999999988754
No 2
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.6e-40 Score=240.08 Aligned_cols=201 Identities=29% Similarity=0.400 Sum_probs=189.4
Q ss_pred CCcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCC
Q 028517 1 MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE 80 (208)
Q Consensus 1 ~~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~ 80 (208)
++++..+..+.++|+.|++.|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.. ++..+..
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~ 76 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL---VDPKDAE 76 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---CCCCCTT
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCC
Confidence 688899999999999999999999999999876 46777889999999999999999999999998776 5667789
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCC-CCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 028517 81 GWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159 (208)
Q Consensus 81 ~~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~ 159 (208)
|.|||+.|+..|+.+++++|++.+ .+++.++..|.||+++|+..++.+++++|+++|++++..+..|.||||.|+..|+
T Consensus 77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 156 (237)
T 3b7b_A 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCC
Confidence 999999999999999999999998 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS 206 (208)
Q Consensus 160 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 206 (208)
.+++++|+++|++++..+..|.||||+|+..++.+++++|+++++..
T Consensus 157 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~ 203 (237)
T 3b7b_A 157 VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203 (237)
T ss_dssp HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999987643
No 3
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.7e-41 Score=247.71 Aligned_cols=195 Identities=24% Similarity=0.284 Sum_probs=147.0
Q ss_pred cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517 7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86 (208)
Q Consensus 7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 86 (208)
+..+.++||.|++.|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+... ++..+..|.||||
T Consensus 54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~ 129 (253)
T 1yyh_A 54 DRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPLI 129 (253)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC--TTCCCTTCCCHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--ccccCCCCCcHHH
Confidence 566777777777777777777777654 456666777777777777777777777777655422 4556667778888
Q ss_pred HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166 (208)
Q Consensus 87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L 166 (208)
.|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|
T Consensus 130 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~L 209 (253)
T 1yyh_A 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209 (253)
T ss_dssp HHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 88888888888888887777777777788888888888888888888888888877777788888888888888888888
Q ss_pred HHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 167 IEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 167 l~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
+++|++++.+|..|.||+++|+..|+.+|+++|.+..++
T Consensus 210 l~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred HHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 888888888888888888888888888888887775543
No 4
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.2e-40 Score=237.32 Aligned_cols=196 Identities=24% Similarity=0.278 Sum_probs=184.8
Q ss_pred cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517 7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86 (208)
Q Consensus 7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 86 (208)
+..+.++|+.|++.|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+... .+..+..|.|||+
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~ 97 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPLI 97 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC--TTCCCTTCCCHHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCcHHH
Confidence 678999999999999999999999876 577788999999999999999999999999876532 5677889999999
Q ss_pred HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166 (208)
Q Consensus 87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L 166 (208)
.|+..++.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||.|+..|+.+++++|
T Consensus 98 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 177 (223)
T 2f8y_A 98 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177 (223)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517 167 IEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS 206 (208)
Q Consensus 167 l~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 206 (208)
+++|++++.++..|.||+++|+..++.+++++|++.+...
T Consensus 178 l~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred HHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999987643
No 5
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.4e-40 Score=242.84 Aligned_cols=188 Identities=24% Similarity=0.289 Sum_probs=155.8
Q ss_pred HHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCH
Q 028517 15 FKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94 (208)
Q Consensus 15 ~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~ 94 (208)
..+...++.+++++|++.+. ......+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|+..|+.
T Consensus 28 ~~~~~~~~~~~v~~Ll~~g~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~ 103 (253)
T 1yyh_A 28 NSEEEEDAPAVISDFIYQGA-SLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD---ANIQDNMGRTPLHAAVSADAQ 103 (253)
T ss_dssp -------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCH
T ss_pred chhhcCCChHHHHHHHHccC-CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCH
Confidence 34788999999999998873 23244588999999999999999999999998876 567788999999999999999
Q ss_pred HHHHHHHhCCC-CCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCC
Q 028517 95 TIVEMLLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173 (208)
Q Consensus 95 ~~~~~Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~ 173 (208)
+++++|++++. +++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 104 ~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 183 (253)
T 1yyh_A 104 GVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183 (253)
T ss_dssp HHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999987 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517 174 DATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS 206 (208)
Q Consensus 174 ~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 206 (208)
+.++..|.||||+|+..|+.+++++|+++++..
T Consensus 184 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 216 (253)
T 1yyh_A 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANR 216 (253)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence 999999999999999999999999999987643
No 6
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.5e-40 Score=239.57 Aligned_cols=196 Identities=27% Similarity=0.295 Sum_probs=179.8
Q ss_pred cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccc--ccccCCCCCcHHH
Q 028517 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--VNAVDEEGWAPIH 86 (208)
Q Consensus 9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~--~~~~~~~~~~~l~ 86 (208)
.|+++||.|++.|+.+.+++|++.. +.+++..+..|.||||+|+..|+.+++++|++.+..... .+..+..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 5789999999999999999999874 467888899999999999999999999999998776321 2456678999999
Q ss_pred HHHhcCCHHHHHHHHhCCCCCCCCCC-------------CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 028517 87 SAASIGNVTIVEMLLSKGADVNLKND-------------GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHR 153 (208)
Q Consensus 87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~-------------~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~ 153 (208)
.|+..|+.+++++|+++|++++.++. .|.||+|+|+..|+.+++++|+++|++++..|..|.||||+
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 160 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 99999999999999999999988765 79999999999999999999999999999999999999999
Q ss_pred HHhhCCHHHH----HHHHHcCCCC------CCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 154 GASTGNSALC----ELLIEEGAEV------DATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 154 A~~~~~~~~~----~~Ll~~~~~~------~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
|+..++.+++ ++|+++|+++ +.+|..|.||+++|+..|+.+++++|+++++.
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 9999999988 9999999988 58899999999999999999999999998754
No 7
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1e-39 Score=235.04 Aligned_cols=193 Identities=36% Similarity=0.469 Sum_probs=134.9
Q ss_pred cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (208)
Q Consensus 9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (208)
.+.++|+.|++.|+.+.++++++.. .......+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIA 80 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC---CCCcCCCCCCHHHHH
Confidence 4566777777777777777777655 334455566777777777777777777777766554 455566677777777
Q ss_pred HhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHH
Q 028517 89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168 (208)
Q Consensus 89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~ 168 (208)
+..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||.|+..|+.+++++|++
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777677777777777777777777777777
Q ss_pred cCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 169 EGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 169 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
+|++++.++..|.||||+|+..++.+++++|++++..
T Consensus 161 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 197 (231)
T 3aji_A 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence 7777777777777777777777777777777766543
No 8
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=9.3e-40 Score=234.75 Aligned_cols=194 Identities=31% Similarity=0.449 Sum_probs=177.1
Q ss_pred CcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517 10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA 89 (208)
Q Consensus 10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~ 89 (208)
+++||+.|++.|+.+.+++|++.+ .......+..|.||||+|+..|+.+++++|++.+.........+..|.||||.|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcC-ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 679999999999999999999887 3444557899999999999999999999999988555433337789999999999
Q ss_pred hcCCHHHHHHHHhCC--CCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 028517 90 SIGNVTIVEMLLSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167 (208)
Q Consensus 90 ~~~~~~~~~~Ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll 167 (208)
..|+.+++++|+++| .+++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999999999999998 888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HcC-CCCCCCCCCCCCHHHHHHHhCCcccccccc-cccc
Q 028517 168 EEG-AEVDATDKAGQTPLMNAVICYNKEFSGCSS-SNKT 204 (208)
Q Consensus 168 ~~~-~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~-~~~~ 204 (208)
++| ++++.++..|.||||+|+..|+.+++++|+ +.+.
T Consensus 161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga 199 (228)
T 2dzn_A 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA 199 (228)
T ss_dssp TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC
T ss_pred hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 999 999999999999999999999999999999 5554
No 9
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2e-40 Score=238.74 Aligned_cols=198 Identities=29% Similarity=0.353 Sum_probs=186.5
Q ss_pred cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW 82 (208)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~ 82 (208)
.+..+..+.++|+.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~ 107 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGC 107 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC--CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC---CCCCCCCCC
Confidence 3556788999999999999999999999875 57778899999999999999999999999998876 566788999
Q ss_pred cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162 (208)
Q Consensus 83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 162 (208)
||||.|+..++.+++++|+++|.+++.++..|.||+|+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.++
T Consensus 108 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 187 (231)
T 3aji_A 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEE 187 (231)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 163 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
+++|+++|++++.+|..|.||+++|+..++.+++++|.++++.
T Consensus 188 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 188 AKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 9999999999999999999999999999999999999987653
No 10
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1e-39 Score=236.34 Aligned_cols=199 Identities=27% Similarity=0.296 Sum_probs=170.9
Q ss_pred ccccccCcHHHHHHHHcCChHHHHHHHHHh--hhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517 4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQ--LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (208)
Q Consensus 4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~--~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (208)
+..|..+.++||.|++.|+.+++++|++.. .+.+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g 79 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS---PMALDRHG 79 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCC
Confidence 567888999999999999999999998742 2456777888899999999999999999999988766 45667788
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCC----CCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHh
Q 028517 82 WAPIHSAASIGNVTIVEMLLSKGA----DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGAS 156 (208)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~A~~ 156 (208)
.||||.|+..++.+++++|++.+. +++.++..|.||+|+|+..++.+++++|+++|++++..+ ..|.||||.|+.
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence 999999999999999999999876 777788889999999999999999999999999988887 778999999999
Q ss_pred hCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 157 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++.
T Consensus 160 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 208 (241)
T 1k1a_A 160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208 (241)
T ss_dssp TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999887654
No 11
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.1e-39 Score=230.21 Aligned_cols=192 Identities=24% Similarity=0.310 Sum_probs=180.1
Q ss_pred ccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHH
Q 028517 8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87 (208)
Q Consensus 8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~ 87 (208)
..+.++|+.|+..|+.+.++.|+..+ ..+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~ 78 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD---INLQNSISDSPYLY 78 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHH
Confidence 46789999999999999999999876 457788899999999999999999999999998877 56678899999999
Q ss_pred HHhcCCHHHHHHHH-hCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHhhCC-----H
Q 028517 88 AASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKVGCTALHRGASTGN-----S 160 (208)
Q Consensus 88 a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~A~~~~~-----~ 160 (208)
|+..|+.+++++|+ ..+.+++.++..|.||+|+|+..++.+++++|+++| .+++..+..|.||||.|+..+. .
T Consensus 79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence 99999999999999 567799999999999999999999999999999998 9999999999999999999998 9
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccc
Q 028517 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNK 203 (208)
Q Consensus 161 ~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~ 203 (208)
+++++|+++|++++.++..|.||+++|+..|+.+++++|++.+
T Consensus 159 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 159 DIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999865
No 12
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.4e-40 Score=237.77 Aligned_cols=201 Identities=24% Similarity=0.338 Sum_probs=182.3
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccc-cccccCCC
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN-VVNAVDEE 80 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~-~~~~~~~~ 80 (208)
+++..+..+.++|+.|+..|+.+++++|++.+ .++...+..|.||||+|+..|+.+++++|++.+.... .++..+..
T Consensus 38 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 115 (241)
T 1k1a_A 38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG--ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115 (241)
T ss_dssp CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTT
T ss_pred CCCcccccCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcC
Confidence 56778889999999999999999999999866 5777788999999999999999999999998776211 25667789
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCCCCCCCCC-CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 028517 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159 (208)
Q Consensus 81 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~ 159 (208)
|.||||.|+..++.+++++|++.|++++.++ ..|.||+|+|+..++.+++++|+++|++++..+..|.||||+|+..|+
T Consensus 116 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 195 (241)
T 1k1a_A 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 195 (241)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 9999999999999999999999999999988 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT 204 (208)
Q Consensus 160 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 204 (208)
.+++++|+++|++++.+|..|.||+++|+..|+.++++.|.++++
T Consensus 196 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 196 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred HHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 999999999999999999999999999999999999999998753
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.2e-39 Score=236.13 Aligned_cols=190 Identities=26% Similarity=0.302 Sum_probs=147.6
Q ss_pred cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (208)
Q Consensus 9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (208)
.|.++||.|++.|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A 76 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWHTPLFNA 76 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHH
Confidence 4678888888888888888888755 46667777788888888888888888888877655 556677788888888
Q ss_pred HhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHH
Q 028517 89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168 (208)
Q Consensus 89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~ 168 (208)
+..|+.+++++|+++|++++. +..|.||+|+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|++
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 77 CVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 888888888888888877764 3457788888888888888888888888888788888888888888888888888888
Q ss_pred cCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 169 EGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 169 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
+|++++. +..|.||||+|+..++.+++++|++.++.
T Consensus 156 ~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad 191 (261)
T 2xai_A 156 SGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGAD 191 (261)
T ss_dssp HTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred cCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCC
Confidence 8888774 67788888888888888888888776654
No 14
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=6.2e-41 Score=242.30 Aligned_cols=199 Identities=27% Similarity=0.295 Sum_probs=178.5
Q ss_pred ccccccCcHHHHHHHHcCChHHHHHHHHHhhh--hhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517 4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL--KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (208)
Q Consensus 4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~--~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (208)
+..+..|.++||.|+..|+.+++++|++.... .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g 78 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD---PELRDFRG 78 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC---SCCCCTTC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCC
Confidence 35678899999999999999999999987632 25778889999999999999999999999998876 56678899
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCCC------CCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHH
Q 028517 82 WAPIHSAASIGNVTIVEMLLSKGAD------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK-VGCTALHRG 154 (208)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~Ll~~~~~------~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~t~l~~A 154 (208)
.||||+|+..|+.+++++|++.+.. .+..+..|.||+|+|+..|+.+++++|+++|++++..+. .|.||||+|
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A 158 (236)
T 1ikn_D 79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 158 (236)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999875 456777899999999999999999999999999999987 999999999
Q ss_pred HhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 155 ASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 155 ~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|+++++.
T Consensus 159 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 209 (236)
T 1ikn_D 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 209 (236)
T ss_dssp HHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred HHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchh
Confidence 999999999999999999999999999999999999999999999998873
No 15
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.9e-39 Score=237.77 Aligned_cols=197 Identities=26% Similarity=0.300 Sum_probs=178.5
Q ss_pred cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW 82 (208)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~ 82 (208)
+...+..+.++|+.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~ 126 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWH 126 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SSCCCTTCC
T ss_pred ccCCCccCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC---CCCCCCCCC
Confidence 3456788899999999999999999999865 46777889999999999999999999999998766 567788999
Q ss_pred cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162 (208)
Q Consensus 83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 162 (208)
|||+.|+..|+.+++++|++.|++++..+ .|.||+|+|+..|+.+++++|+++|++++..+..|.|||+.|+..|+.++
T Consensus 127 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~ 205 (285)
T 3d9h_A 127 TPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRAC 205 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 99999999999999999999999887644 59999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517 163 CELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS 206 (208)
Q Consensus 163 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 206 (208)
+++|+++|++++. +..|.||||+|+..++.+++++|++++...
T Consensus 206 v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~ 248 (285)
T 3d9h_A 206 VKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADT 248 (285)
T ss_dssp HHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 9999999999984 888999999999999999999999887643
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.5e-39 Score=248.98 Aligned_cols=199 Identities=19% Similarity=0.228 Sum_probs=158.9
Q ss_pred ccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccc----------
Q 028517 4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV---------- 73 (208)
Q Consensus 4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~---------- 73 (208)
+..|..+.++||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.....
T Consensus 14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A 91 (364)
T 3ljn_A 14 IKSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLA 91 (364)
T ss_dssp --CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHH
Confidence 344555566666666666666666666543 34555555666666666666666666666654442111
Q ss_pred ----------------------cc-----------------ccCCCCCcHHHHHHhcC--CHHHHHHHHhCCCCCCCCCC
Q 028517 74 ----------------------VN-----------------AVDEEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKND 112 (208)
Q Consensus 74 ----------------------~~-----------------~~~~~~~~~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~ 112 (208)
.+ ..+..|.||||.|+..| +.+++++|+++|++++.++.
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~ 171 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC
Confidence 11 15567899999999999 99999999999999999999
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 028517 113 GGRTALHYAASKGWLKIVELLISRGAK-----INSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187 (208)
Q Consensus 113 ~~~~~l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A 187 (208)
.|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|
T Consensus 172 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 172 ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999999988 889999999999999999999999999999999999999999999999
Q ss_pred HHhCCcccccccccccc
Q 028517 188 VICYNKEFSGCSSSNKT 204 (208)
Q Consensus 188 ~~~~~~~~~~~l~~~~~ 204 (208)
+..|+.+++++|+++++
T Consensus 252 ~~~g~~~~v~~Ll~~~~ 268 (364)
T 3ljn_A 252 VRAAMVLLTKELLQKTD 268 (364)
T ss_dssp HHTCCHHHHHHHHHHSC
T ss_pred HHhChHHHHHHHHHcCC
Confidence 99999999999998754
No 17
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.7e-38 Score=241.37 Aligned_cols=200 Identities=32% Similarity=0.376 Sum_probs=180.0
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (208)
+++..+..+.++||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|
T Consensus 50 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~---~~~~~~~g 124 (351)
T 3utm_A 50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---VNAMDLWQ 124 (351)
T ss_dssp TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTC
T ss_pred CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCC
Confidence 45677888999999999999999999999876 57778889999999999999999999999998776 56677889
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCCCCCCCC--------------------------------------------------
Q 028517 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKN-------------------------------------------------- 111 (208)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-------------------------------------------------- 111 (208)
.||||.|+..|+.+++++|+++|++++..+
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (351)
T 3utm_A 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN 204 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence 999999999999999999999998877544
Q ss_pred ----CCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q 028517 112 ----DGGRTALHYAASK---GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPL 184 (208)
Q Consensus 112 ----~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l 184 (208)
..+.||+|+|+.. +..+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++.+|..|.|||
T Consensus 205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L 284 (351)
T 3utm_A 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284 (351)
T ss_dssp CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence 4567888999888 557899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcccccccccccccc
Q 028517 185 MNAVICYNKEFSGCSSSNKTWS 206 (208)
Q Consensus 185 ~~A~~~~~~~~~~~l~~~~~~~ 206 (208)
|+|+..|+.+++++|+++++..
T Consensus 285 ~~A~~~~~~~~v~~Ll~~gad~ 306 (351)
T 3utm_A 285 HRAALAGHLQTCRLLLSYGSDP 306 (351)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHHHHcCcHHHHHHHHHcCCCC
Confidence 9999999999999999987643
No 18
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.2e-39 Score=238.29 Aligned_cols=194 Identities=23% Similarity=0.287 Sum_probs=173.1
Q ss_pred CcHHHHHHHHcCChHHHH----HHHHHhhhhhccC----CCCCCchHHHHHHhc---CCHHHHHHHHhccccccccc---
Q 028517 10 KDKDLFKAAETGDSSTFK----SLSKQQLLKSLSL----RNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVN--- 75 (208)
Q Consensus 10 ~~~~l~~a~~~g~~~~~~----~l~~~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~~~~ll~~~~~~~~~~--- 75 (208)
|+++||.|++.|+.+.++ +|++.+ .+++. .+..|.||||+|+.. |+.+++++|++.+.......
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g--~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNS--KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcC--CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 789999999999998554 444444 45665 789999999999999 99999999999877643211
Q ss_pred -----ccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCC-------------CchHHHHHHHcCCHHHHHHHHH--
Q 028517 76 -----AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLIS-- 135 (208)
Q Consensus 76 -----~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~~~~l~~a~~~~~~~~~~~ll~-- 135 (208)
..+..|.||||.|+..|+.+++++|+++|++++.++.. |.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 23467999999999999999999999999999998876 9999999999999999999999
Q ss_pred -cCCCCCCCCCCCCcHHHHHHh--hCCHH-------HHHHHHHcCCCC-------CCCCCCCCCHHHHHHHhCCcccccc
Q 028517 136 -RGAKINSKDKVGCTALHRGAS--TGNSA-------LCELLIEEGAEV-------DATDKAGQTPLMNAVICYNKEFSGC 198 (208)
Q Consensus 136 -~~~~~~~~~~~~~t~l~~A~~--~~~~~-------~~~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~ 198 (208)
+|++++..|..|.||||+|+. .++.+ ++++|+++|+++ +.+|..|.||||+|+..|+.+++++
T Consensus 160 ~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~ 239 (256)
T 2etb_A 160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRH 239 (256)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHH
Confidence 999999999999999999999 78888 999999999999 8999999999999999999999999
Q ss_pred ccccccc
Q 028517 199 SSSNKTW 205 (208)
Q Consensus 199 l~~~~~~ 205 (208)
|+++++.
T Consensus 240 Ll~~g~~ 246 (256)
T 2etb_A 240 ILQREFS 246 (256)
T ss_dssp HHHHHHH
T ss_pred HHhCCCC
Confidence 9997753
No 19
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-38 Score=233.10 Aligned_cols=205 Identities=25% Similarity=0.292 Sum_probs=157.6
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccc-----
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA----- 76 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~----- 76 (208)
+++..+..+.++|+.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+......
T Consensus 64 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~ 141 (285)
T 1wdy_A 64 DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG--ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141 (285)
T ss_dssp CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHH
Confidence 34455566667777777777777777776654 35555666777777777777777777777776655322111
Q ss_pred --cCCCCCcHHHHHHhcCCHHHHHHHHhC-CCCCCCCCCCCchHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCCCCc
Q 028517 77 --VDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGW----LKIVELLISRGAKINSKDKVGCT 149 (208)
Q Consensus 77 --~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~t 149 (208)
.+..|.|||+.|+..|+.+++++|++. |.+++.++..|.||+|+|+..+. .+++++|+++|++++..+..|.|
T Consensus 142 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t 221 (285)
T 1wdy_A 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221 (285)
T ss_dssp HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred HhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCc
Confidence 155677888888888888888888876 78888888888888888888887 78888888888888888888889
Q ss_pred HHHHHHhhCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHhCCccccccccccccccCC
Q 028517 150 ALHRGASTGNSALCELLIE-EGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSGC 208 (208)
Q Consensus 150 ~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~~ 208 (208)
|||.|+..|+.+++++|++ .|++++.++..|.||+++|+..++.+++++|+++++..++
T Consensus 222 ~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 222 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred HHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence 9999999999999999988 6888888888899999999999999999999888876553
No 20
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.4e-39 Score=240.23 Aligned_cols=198 Identities=16% Similarity=0.127 Sum_probs=181.1
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (208)
+++..+..+.++||.|++.|+.+++++|++.+ .+++.. +|.||||+|+..|+.+++++|++.+.+ ++..+..|
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g 95 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAG--ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLD---DSQFDDKG 95 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCC---TTCCCTTS
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCC
Confidence 46778899999999999999999999999876 355544 489999999999999999999998877 56678899
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCC-chHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCH
Q 028517 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG-RTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160 (208)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~ 160 (208)
.||||.|+..|+.+++++|+++|++++.++..| .||+|+|+..|+.+++++|+++|.+.... ..|.||||.|+..|+.
T Consensus 96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~ 174 (285)
T 3kea_A 96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHV 174 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChH
Confidence 999999999999999999999999999999999 79999999999999999999999876322 2789999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCH-HHHHHHhCCccccccccccccccC
Q 028517 161 ALCELLIEEGAEVDATDKAGQTP-LMNAVICYNKEFSGCSSSNKTWSG 207 (208)
Q Consensus 161 ~~~~~Ll~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~l~~~~~~~~ 207 (208)
+++++|+++|++++.++..|.|| ||+|+..++.+++++|+++++..+
T Consensus 175 ~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 175 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY 222 (285)
T ss_dssp HHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST
T ss_pred HHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 99999999999999999999998 999999999999999999887543
No 21
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9.7e-39 Score=245.29 Aligned_cols=202 Identities=23% Similarity=0.289 Sum_probs=185.2
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (208)
+++..+..+.|+|+.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.....++..+..|
T Consensus 158 ~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g--a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g 235 (373)
T 2fo1_E 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG--ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG 235 (373)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCC--CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC
Confidence 56788899999999999999999999999876 5777889999999999999999999999998763222367788899
Q ss_pred CcHHHHHHhcC---CHHHHHHHHhCCCCCCC--------CCCCCchHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCc
Q 028517 82 WAPIHSAASIG---NVTIVEMLLSKGADVNL--------KNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKVGCT 149 (208)
Q Consensus 82 ~~~l~~a~~~~---~~~~~~~Ll~~~~~~~~--------~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t 149 (208)
.||||.|+..+ +.+++++|+++|++++. ++..|.||||+|+..|+.+++++|++++ ++++..|..|.|
T Consensus 236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T 315 (373)
T 2fo1_E 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT 315 (373)
T ss_dssp CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence 99999999988 89999999999998876 5668999999999999999999999886 999999999999
Q ss_pred HHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 150 ALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 150 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
|||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|+++++.
T Consensus 316 pL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 316 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999998864
No 22
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=239.03 Aligned_cols=195 Identities=26% Similarity=0.345 Sum_probs=152.7
Q ss_pred ccccccCcHHHHHHHHcCChH-HHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517 4 DIDQTIKDKDLFKAAETGDSS-TFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW 82 (208)
Q Consensus 4 ~~~~~~~~~~l~~a~~~g~~~-~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~ 82 (208)
+..+..+.++|+.|+..+..+ +++.|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.
T Consensus 46 ~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~---~~~~~~~g~ 120 (269)
T 4b93_B 46 SAADPEFCHPLCQCPKCAPAQKRLAKVPASG--LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN---AGARNADQA 120 (269)
T ss_dssp -----------------------------CC--CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC---TTCCCTTCC
T ss_pred cccCccCCCHHHHHHHhCCHHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC---cCccCCCCC
Confidence 445667889999999988875 677787655 57888899999999999999999999999998876 566778999
Q ss_pred cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162 (208)
Q Consensus 83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 162 (208)
||++.|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus 121 t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~ 200 (269)
T 4b93_B 121 VPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFV 200 (269)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred CccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCCHHHHHHHhCC-ccccccccccc
Q 028517 163 CELLIEEGAEVDATDKAGQTPLMNAVICYN-KEFSGCSSSNK 203 (208)
Q Consensus 163 ~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~-~~~~~~l~~~~ 203 (208)
+++|+++|+|++.+|.+|.||||+|+++++ .+++++|.+..
T Consensus 201 v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~ 242 (269)
T 4b93_B 201 VELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV 242 (269)
T ss_dssp HHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-----
T ss_pred HHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhc
Confidence 999999999999999999999999998876 46666665543
No 23
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=3.2e-39 Score=238.14 Aligned_cols=201 Identities=23% Similarity=0.299 Sum_probs=175.8
Q ss_pred ccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhcc------CCCCCCchHHHHHHhc---CCHHHHHHHHhccccccc-
Q 028517 4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLS------LRNDDDRTLLHVAASC---GHPEVVEILLSVDESANV- 73 (208)
Q Consensus 4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~------~~~~~g~t~L~~A~~~---g~~~~~~~ll~~~~~~~~- 73 (208)
+..+..++++|+.|++.|+.++++.|++........ ..+..|.||||+|+.. |+.+++++|++.++....
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence 456788999999999999999999999865322211 3478999999999987 999999999998764221
Q ss_pred -------ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCC--------------CCchHHHHHHHcCCHHHHHH
Q 028517 74 -------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND--------------GGRTALHYAASKGWLKIVEL 132 (208)
Q Consensus 74 -------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~~~~l~~a~~~~~~~~~~~ 132 (208)
....+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 166 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKF 166 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHH
T ss_pred hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 122456899999999999999999999999999999887 79999999999999999999
Q ss_pred HHH---cCCCCCCCCCCCCcHHHHHHhhCC---------HHHHHHHHHcCCCCC-------CCCCCCCCHHHHHHHhCCc
Q 028517 133 LIS---RGAKINSKDKVGCTALHRGASTGN---------SALCELLIEEGAEVD-------ATDKAGQTPLMNAVICYNK 193 (208)
Q Consensus 133 ll~---~~~~~~~~~~~~~t~l~~A~~~~~---------~~~~~~Ll~~~~~~~-------~~~~~g~t~l~~A~~~~~~ 193 (208)
|++ +|++++.+|..|.||||+|+..|+ .+++++|+++|++++ .+|..|.||||+|+..|+.
T Consensus 167 Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~ 246 (273)
T 2pnn_A 167 LLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246 (273)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred HHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence 999 999999999999999999999998 799999999999986 5899999999999999999
Q ss_pred ccccccccccc
Q 028517 194 EFSGCSSSNKT 204 (208)
Q Consensus 194 ~~~~~l~~~~~ 204 (208)
+++++|+++++
T Consensus 247 ~iv~~Ll~~ga 257 (273)
T 2pnn_A 247 GVLAYILQREI 257 (273)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHCCC
Confidence 99999999876
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.7e-38 Score=228.40 Aligned_cols=195 Identities=30% Similarity=0.428 Sum_probs=180.0
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (208)
+++..+..+.++|+.|+..|+.+++++|++.+ .++...+..|.||||+|+..|+.+++++|++.+... ++..+..|
T Consensus 36 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~g 111 (237)
T 3b7b_A 36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG--ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGG 111 (237)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--CCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC--TTCCCTTS
T ss_pred CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC--cccCCCCC
Confidence 56777888999999999999999999999766 467778899999999999999999999999876322 66778899
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161 (208)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~ 161 (208)
.|||+.|+..++.+++++|+++|++++.++..|.||+|+|+..|+.+++++|+++|++++..+..|.||||.|++.++.+
T Consensus 112 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 191 (237)
T 3b7b_A 112 WTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccc
Q 028517 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSS 200 (208)
Q Consensus 162 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~ 200 (208)
++++|+++|++++.+|.+|.||+++|+..++.+.+..++
T Consensus 192 ~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 192 CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876554443
No 25
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=227.28 Aligned_cols=201 Identities=29% Similarity=0.315 Sum_probs=128.8
Q ss_pred cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW 82 (208)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~ 82 (208)
++..+..+.++|+.|++.|+.+++++|++.+. ......+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.
T Consensus 35 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~ 110 (240)
T 3eu9_A 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGA-IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD---PSLIDGEGC 110 (240)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC-cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC---CcccCCCCC
Confidence 34444555556666666666666666655441 11122233355666666666666666666655444 334455566
Q ss_pred cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC-HHHHHHHHHcCCCCCCCCC-CCCcHHHHHHhhCCH
Q 028517 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDK-VGCTALHRGASTGNS 160 (208)
Q Consensus 83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~ll~~~~~~~~~~~-~~~t~l~~A~~~~~~ 160 (208)
|||+.|+..|+.+++++|+++|++++.++..|.||+++|+..+. .+++++|++.|++++..+. .|.||||.|+..|+.
T Consensus 111 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 190 (240)
T 3eu9_A 111 SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCH
T ss_pred CHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCH
Confidence 66666666666666666666666666666666666666664443 5566666666666666665 678888888888888
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccccC
Q 028517 161 ALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWSG 207 (208)
Q Consensus 161 ~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~~ 207 (208)
+++++|+++|++++.++..|.||+++|+..|+.+++++|++.+...+
T Consensus 191 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 191 TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 88888888888888888888888888888888888888888776544
No 26
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=4.2e-38 Score=216.03 Aligned_cols=157 Identities=42% Similarity=0.636 Sum_probs=92.8
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcC
Q 028517 13 DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG 92 (208)
Q Consensus 13 ~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~ 92 (208)
+|+.|++.|+.++|+.|++.+ .+++.++..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..|
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~G--advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad---~~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENG--ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc---hhhhccCCCCHHHHHHHcC
Confidence 456666666666666666544 35555566666666666666666666666655544 3445555666666666666
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCC
Q 028517 93 NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172 (208)
Q Consensus 93 ~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~ 172 (208)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus 82 ~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 82 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred CHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred CC
Q 028517 173 VD 174 (208)
Q Consensus 173 ~~ 174 (208)
++
T Consensus 162 ie 163 (169)
T 4gpm_A 162 LE 163 (169)
T ss_dssp --
T ss_pred cC
Confidence 54
No 27
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.1e-38 Score=229.94 Aligned_cols=194 Identities=25% Similarity=0.256 Sum_probs=178.4
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (208)
+++..+..+.++||.|++.|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+.. .+..|
T Consensus 28 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----~~~~g 101 (261)
T 2xai_A 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ----PESDL 101 (261)
T ss_dssp CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS----CSCTT
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----CCCCC
Confidence 57788889999999999999999999999876 5778889999999999999999999999999887642 23468
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161 (208)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~ 161 (208)
.||||.|+..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++. +..|.||||.|+..|+.+
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~ 180 (261)
T 2xai_A 102 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEE 180 (261)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHH
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999985 788999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT 204 (208)
Q Consensus 162 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 204 (208)
++++|+++|++++.+|.+|.||+++|+. +.+++++|++.+.
T Consensus 181 ~v~~Ll~~gad~~~~d~~g~tpl~~A~~--~~~~~~~ll~~~~ 221 (261)
T 2xai_A 181 LACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLEREG 221 (261)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCGGGGSCT--TCTHHHHHHHC-C
T ss_pred HHHHHHHcCCCCCCcCCCCCChhhhccc--cccHHHHHHhccC
Confidence 9999999999999999999999999995 4568888888654
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.1e-38 Score=225.69 Aligned_cols=194 Identities=26% Similarity=0.291 Sum_probs=176.3
Q ss_pred cccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccC-CCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCc
Q 028517 5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA 83 (208)
Q Consensus 5 ~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~ 83 (208)
..+..+.++|+.|++.|+.+++++|++.+...+... .+..|.||||+|+..|+.+++++|++.+.... ++..+..|.|
T Consensus 31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t 109 (228)
T 2dzn_A 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVT 109 (228)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCC
Confidence 367889999999999999999999998874445555 78899999999999999999999999873222 6777889999
Q ss_pred HHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKVGCTALHRGASTGNSAL 162 (208)
Q Consensus 84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~t~l~~A~~~~~~~~ 162 (208)
|||.|+..++.+++++|+++|++++.++..|.||+|+|+..|+.+++++|+++| .+++..+..|.||||+|+..|+.++
T Consensus 110 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~ 189 (228)
T 2dzn_A 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH-HcCCCCCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517 163 CELLI-EEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSN 202 (208)
Q Consensus 163 ~~~Ll-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 202 (208)
+++|+ ++|++++.+|.+|.||+++|+.. +++++|.++
T Consensus 190 v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 190 AVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp HHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred HHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 99999 88999999999999999999654 677777654
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-39 Score=235.35 Aligned_cols=199 Identities=25% Similarity=0.331 Sum_probs=156.5
Q ss_pred cccccCcHHHHHHHHcCChHHHHHHHHHhhh------hhccCCCCCCchHHHHHHhcCCH-HHHHHHHhccccccccccc
Q 028517 5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLL------KSLSLRNDDDRTLLHVAASCGHP-EVVEILLSVDESANVVNAV 77 (208)
Q Consensus 5 ~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~------~~~~~~~~~g~t~L~~A~~~g~~-~~~~~ll~~~~~~~~~~~~ 77 (208)
..|..+.++|+.|++.|+.++|++|++.+.. ......+..+.|||+.|+..+.. +++++|++.|.+ ++..
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad---vn~~ 82 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG---VNVT 82 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC---TTCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC---CCCc
Confidence 4566778999999999999999999975421 12445677889999999988876 478899988876 6778
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhh
Q 028517 78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157 (208)
Q Consensus 78 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~ 157 (208)
+..|.||||+|+..|+.+++++|++.+++++.++..|.||++.|+..++.+++++|+++|++++..|..|.||||+|+..
T Consensus 83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~ 162 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG 162 (269)
T ss_dssp CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS 206 (208)
Q Consensus 158 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 206 (208)
|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++..
T Consensus 163 g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~ 211 (269)
T 4b93_B 163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV 211 (269)
T ss_dssp TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 9999999999999999999999999999999999999999999987654
No 30
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-37 Score=243.42 Aligned_cols=199 Identities=32% Similarity=0.372 Sum_probs=166.5
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (208)
+++..+..+.++|+.|+..|+.++|++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|
T Consensus 6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g 80 (437)
T 1n11_A 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---VNAKAKDD 80 (437)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHHTT--CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---SSCCCTTS
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCC
Confidence 45667888899999999999999999998865 46677788899999999999999999999987765 56677888
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161 (208)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~ 161 (208)
.||||.|+..|+.+++++|+++|++++.++..|.||+++|+..|+.+++++|++++.+.+..+..|.||||.|+..|+.+
T Consensus 81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~ 160 (437)
T 1n11_A 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence 99999999999999999999999998888888999999999999999999999888888888888889999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 162 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
++++|+++|++++..+..|.|||++|+..++.+++++|++++..
T Consensus 161 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 204 (437)
T 1n11_A 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS 204 (437)
T ss_dssp HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 99999988888888888888899999988888888888887653
No 31
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.6e-37 Score=212.08 Aligned_cols=157 Identities=41% Similarity=0.598 Sum_probs=149.0
Q ss_pred hHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCC
Q 028517 47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW 126 (208)
Q Consensus 47 t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~ 126 (208)
++|+.||..|+.+++++|++.|.+ ++..+..|.|||+.|+..++.+++++|++.|++++.++..|.||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad---vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD---VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence 479999999999999999998887 67788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517 127 LKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS 206 (208)
Q Consensus 127 ~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 206 (208)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|.|||++|+..|+.+++++|++++++.
T Consensus 83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998763
No 32
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.6e-38 Score=231.64 Aligned_cols=193 Identities=25% Similarity=0.258 Sum_probs=179.3
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (208)
+++..+..+.++|+.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+. +. +..|
T Consensus 84 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~-~~~g 157 (285)
T 3d9h_A 84 AVNIITADHVSPLHEACLGGHLSCVKILLKHG--AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV---QP-ESDL 157 (285)
T ss_dssp CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS---SC-SCTT
T ss_pred CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC---CC-CCCC
Confidence 57788899999999999999999999999875 577888999999999999999999999999988763 22 3459
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517 82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161 (208)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~ 161 (208)
.|||+.|+..|+.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++. +..|.||||+|+..|+.+
T Consensus 158 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~ 236 (285)
T 3d9h_A 158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEE 236 (285)
T ss_dssp SCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999984 888999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccc
Q 028517 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNK 203 (208)
Q Consensus 162 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~ 203 (208)
++++|+++|++++.+|.+|.||+++|+ ++.+++++|+++.
T Consensus 237 ~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~ 276 (285)
T 3d9h_A 237 LACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLERE 276 (285)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred HHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence 999999999999999999999999999 5679999999873
No 33
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-37 Score=242.57 Aligned_cols=197 Identities=29% Similarity=0.361 Sum_probs=131.2
Q ss_pred ccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCc
Q 028517 4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA 83 (208)
Q Consensus 4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~ 83 (208)
+..+..+.++|+.|+..|+.+++++|++.+ .++...+..|.||||+|+..|+.+++++|++.+.+ .+..+..|.|
T Consensus 173 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t 247 (437)
T 1n11_A 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRG--GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS---ANAESVQGVT 247 (437)
T ss_dssp TCCCSSCCCHHHHHHHTTCHHHHHHHGGGT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCC
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCC
Confidence 344445555555555555555555555443 23444455556666666666666666666655544 3445556677
Q ss_pred HHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHH
Q 028517 84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163 (208)
Q Consensus 84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~ 163 (208)
||+.|+..|+.+++++|++++++++.++..|.||+|+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++
T Consensus 248 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v 327 (437)
T 1n11_A 248 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV 327 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 164 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
++|+++|++++.++..|.||||+|+..|+.+++++|+++++.
T Consensus 328 ~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~ 369 (437)
T 1n11_A 328 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369 (437)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCC
Confidence 777777777777777777777777777777777777776543
No 34
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=9.6e-39 Score=233.91 Aligned_cols=199 Identities=25% Similarity=0.282 Sum_probs=173.0
Q ss_pred cccCcHHHHHHHHcCChHHHHHHHHHhh--hhhccCC----CCCCchHHHHHH---hcCCHHHHHHHHhccccccc----
Q 028517 7 QTIKDKDLFKAAETGDSSTFKSLSKQQL--LKSLSLR----NDDDRTLLHVAA---SCGHPEVVEILLSVDESANV---- 73 (208)
Q Consensus 7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~--~~~~~~~----~~~g~t~L~~A~---~~g~~~~~~~ll~~~~~~~~---- 73 (208)
+..++++|+.|++.|+.+.++.|++... +.++... +..|.||||+|+ ..|+.+++++|++.+.....
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 4568899999999999997777776211 1233322 377999999999 77999999999997754221
Q ss_pred ----ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCC--------------CCCchHHHHHHHcCCHHHHHHHHH
Q 028517 74 ----VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN--------------DGGRTALHYAASKGWLKIVELLIS 135 (208)
Q Consensus 74 ----~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~--------------~~~~~~l~~a~~~~~~~~~~~ll~ 135 (208)
....+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 33445589999999999999999999999999999988 589999999999999999999999
Q ss_pred ---cCCCCCCCCCCCCcHHHHHHhhCC---------HHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHhCCcccc
Q 028517 136 ---RGAKINSKDKVGCTALHRGASTGN---------SALCELLIEEGAEV-------DATDKAGQTPLMNAVICYNKEFS 196 (208)
Q Consensus 136 ---~~~~~~~~~~~~~t~l~~A~~~~~---------~~~~~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~ 196 (208)
+|++++..|..|.||||+|+..++ .+++++|+++|+++ +.+|..|.||||+|+..|+.+++
T Consensus 162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v 241 (260)
T 3jxi_A 162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF 241 (260)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHH
Confidence 999999999999999999998887 79999999999988 67999999999999999999999
Q ss_pred ccccccccc
Q 028517 197 GCSSSNKTW 205 (208)
Q Consensus 197 ~~l~~~~~~ 205 (208)
++|+++++.
T Consensus 242 ~~Ll~~g~~ 250 (260)
T 3jxi_A 242 QHIIRREIA 250 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhCCC
Confidence 999998764
No 35
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7e-37 Score=226.18 Aligned_cols=190 Identities=28% Similarity=0.417 Sum_probs=169.7
Q ss_pred cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517 7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86 (208)
Q Consensus 7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 86 (208)
+..+.++|+.|++.|+.+++++|++.+ .++...+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.|||+
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~ 110 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFM 110 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTCCBHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCcccCCHHH
Confidence 666789999999999999999998765 46677788899999999999999999999987766 5667788999999
Q ss_pred HHHhcCCHHHHHHHHhCCCCCCCC----------CCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHH
Q 028517 87 SAASIGNVTIVEMLLSKGADVNLK----------NDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGA 155 (208)
Q Consensus 87 ~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~A~ 155 (208)
.|+..|+.+++++|+++|.+++.+ +..|.||+++|+..|+.+++++|+++ |.+++..+..|.||||.|+
T Consensus 111 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~ 190 (285)
T 1wdy_A 111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL 190 (285)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 999999999999999999888877 66788999999999999999999987 8999999999999999999
Q ss_pred hhCC----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccc
Q 028517 156 STGN----SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSS 201 (208)
Q Consensus 156 ~~~~----~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~ 201 (208)
..++ .+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 9988 889999999999999999999999999999999999999998
No 36
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.8e-37 Score=227.60 Aligned_cols=188 Identities=25% Similarity=0.301 Sum_probs=159.8
Q ss_pred cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccc-----------
Q 028517 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESA----------- 71 (208)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~----------- 71 (208)
++..+..+.+|||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+...
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 115 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhc
Confidence 5778889999999999999999999999876 577888999999999999999999999999866431
Q ss_pred ---------------------------------ccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCC-CchH
Q 028517 72 ---------------------------------NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRTA 117 (208)
Q Consensus 72 ---------------------------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~ 117 (208)
..++..+..|.||||.|+..|+.+++++|+++|++++.++.. |.||
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tp 195 (282)
T 1oy3_D 116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195 (282)
T ss_dssp ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred ccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCH
Confidence 114556778999999999999999999999999999998864 9999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCC
Q 028517 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192 (208)
Q Consensus 118 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 192 (208)
||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++.+|.||+++|.....
T Consensus 196 L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987654
No 37
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=6.1e-37 Score=221.30 Aligned_cols=199 Identities=25% Similarity=0.269 Sum_probs=183.1
Q ss_pred cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW 82 (208)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~ 82 (208)
++..+..+.++|+.|++.|+.+++++|++.+ .++...+..|.||||+|+..|+.+++++|++.+... ....+..+.
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~~~ 77 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV--DQLGGDLNS 77 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCBTTTTB
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc--hhhcCCcCC
Confidence 5667888999999999999999999999876 567788899999999999999999999999987764 334455689
Q ss_pred cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC-HH
Q 028517 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN-SA 161 (208)
Q Consensus 83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~-~~ 161 (208)
|||+.|+..|+.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++..+..|.|||+.|+..+. .+
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred ChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997766 89
Q ss_pred HHHHHHHcCCCCCCCCC-CCCCHHHHHHHhCCccccccccccccc
Q 028517 162 LCELLIEEGAEVDATDK-AGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 162 ~~~~Ll~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
++++|++.|++++..+. .|.||||+|+..|+.+++++|++++..
T Consensus 158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 202 (240)
T 3eu9_A 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202 (240)
T ss_dssp THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999987 999999999999999999999998654
No 38
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-37 Score=231.90 Aligned_cols=194 Identities=30% Similarity=0.399 Sum_probs=168.9
Q ss_pred cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517 7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86 (208)
Q Consensus 7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 86 (208)
+..+.++|+.|+..|+.+.+++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~tpL~ 111 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLH 111 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHH
Confidence 456789999999999999999999876 47778899999999999999999999999998876 5677889999999
Q ss_pred HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHc-CCCC-------------------------
Q 028517 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKI------------------------- 140 (208)
Q Consensus 87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~------------------------- 140 (208)
+|+..|+.+++++|+++|++++.++..|.||+++|+..+..+++++++.. +.++
T Consensus 112 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (299)
T 1s70_B 112 AAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191 (299)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999998888888888776643 3332
Q ss_pred -CCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 141 -NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 141 -~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++..
T Consensus 192 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad 257 (299)
T 1s70_B 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD 257 (299)
T ss_dssp CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Confidence 22456788999999999999999999998999988888899999999999999999999887654
No 39
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-37 Score=238.84 Aligned_cols=202 Identities=21% Similarity=0.237 Sum_probs=183.1
Q ss_pred Cccccc-ccCcHHHHHHHHcCChHHHHHHHHH------hhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccc
Q 028517 2 DMDIDQ-TIKDKDLFKAAETGDSSTFKSLSKQ------QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVV 74 (208)
Q Consensus 2 ~~~~~~-~~~~~~l~~a~~~g~~~~~~~l~~~------~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~ 74 (208)
+++..+ ..++++||.|+..|+.+++++|+.. ..+.+++..+..|.||||+|+..|+.+++++|++.+.+ +
T Consensus 116 ~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~---~ 192 (373)
T 2fo1_E 116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---P 192 (373)
T ss_dssp TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---S
T ss_pred cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC---C
Confidence 345666 6899999999999999999998742 12457788899999999999999999999999998877 5
Q ss_pred cccCCCCCcHHHHHHhcCCHHHHHHHHhCC---CCCCCCCCCCchHHHHHHHcC---CHHHHHHHHHcCCCCCC------
Q 028517 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKG---ADVNLKNDGGRTALHYAASKG---WLKIVELLISRGAKINS------ 142 (208)
Q Consensus 75 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~------ 142 (208)
+..+..|.||||.|+..|+.+++++|++++ .+++.++..|.||+|+|+..+ ..+++++|+++|++++.
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 272 (373)
T 2fo1_E 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK 272 (373)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGT
T ss_pred cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccccc
Confidence 667889999999999999999999999988 789999999999999999988 89999999999999876
Q ss_pred --CCCCCCcHHHHHHhhCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517 143 --KDKVGCTALHRGASTGNSALCELLIEEG-AEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS 206 (208)
Q Consensus 143 --~~~~~~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 206 (208)
.+..|.||||.|+..|+.+++++|++++ ++++.+|..|.||||+|+..|+.+++++|+++++..
T Consensus 273 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~ 339 (373)
T 2fo1_E 273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 339 (373)
T ss_dssp SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred CcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 5668999999999999999999999885 999999999999999999999999999999987653
No 40
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=228.66 Aligned_cols=194 Identities=25% Similarity=0.331 Sum_probs=180.3
Q ss_pred CcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517 10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA 89 (208)
Q Consensus 10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~ 89 (208)
.+++++.|+..|+.+.++.++.......++..|..|.||||+|+..|+.+++++|++.+... ++..+..|.|||+.|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~--~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK--VDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC--TTCCCTTSCCHHHHGG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc--CCCCCCCCCCHHHHHH
Confidence 45677889999999999999988766668889999999999999999999999999988622 6778889999999999
Q ss_pred -----hcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHH
Q 028517 90 -----SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE 164 (208)
Q Consensus 90 -----~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~ 164 (208)
..++.+++++|++.|...+..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.++++
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~ 233 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG 233 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 668899999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-cCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 165 LLIE-EGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 165 ~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
+|++ .|++++.+|.+|.|||++|+..|+.+++++|+++...
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence 9999 8999999999999999999999999999999987653
No 41
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.2e-37 Score=232.76 Aligned_cols=199 Identities=29% Similarity=0.365 Sum_probs=181.2
Q ss_pred cccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcH
Q 028517 5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP 84 (208)
Q Consensus 5 ~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 84 (208)
..+..+.++|+.|++.|+.+.++.++... +.+.+..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||
T Consensus 19 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~ 94 (351)
T 3utm_A 19 LTGEYKKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD---VHAKDKGGLVP 94 (351)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCH
T ss_pred eeccccchhHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCcH
Confidence 44567789999999999999999999765 567778899999999999999999999999998876 67778899999
Q ss_pred HHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------------------
Q 028517 85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-------------------- 144 (208)
Q Consensus 85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-------------------- 144 (208)
||.|+..|+.+++++|+++|++++.++..|.||+|+|+..|+.+++++|+++|++++..+
T Consensus 95 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~ 174 (351)
T 3utm_A 95 LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLT 174 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876544
Q ss_pred ----------------------------------CCCCcHHHHHHhh---CCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 028517 145 ----------------------------------KVGCTALHRGAST---GNSALCELLIEEGAEVDATDKAGQTPLMNA 187 (208)
Q Consensus 145 ----------------------------------~~~~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A 187 (208)
..|.||||.|+.. +..+++++|+++|++++.++.+|.||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 254 (351)
T 3utm_A 175 YEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVA 254 (351)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred hhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHH
Confidence 4567999999998 558999999999999999999999999999
Q ss_pred HHhCCccccccccccccccC
Q 028517 188 VICYNKEFSGCSSSNKTWSG 207 (208)
Q Consensus 188 ~~~~~~~~~~~l~~~~~~~~ 207 (208)
+..|+.+++++|++++...+
T Consensus 255 ~~~g~~~~v~~Ll~~ga~~n 274 (351)
T 3utm_A 255 AERAHNDVMEVLHKHGAKMN 274 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTT
T ss_pred HHcCCHHHHHHHHHCCCCCC
Confidence 99999999999999876543
No 42
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=1.9e-36 Score=212.32 Aligned_cols=165 Identities=28% Similarity=0.345 Sum_probs=156.3
Q ss_pred hhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCc
Q 028517 36 KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115 (208)
Q Consensus 36 ~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 115 (208)
...+.++..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|+..++.+++++|+++|++++.++..|.
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 102 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK---LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK 102 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSC
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc---cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 34567899999999999999999999999998765 567788999999999999999999999999999999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccc
Q 028517 116 TALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195 (208)
Q Consensus 116 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~ 195 (208)
||+|+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..|+.++
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccc
Q 028517 196 SGCSSSNK 203 (208)
Q Consensus 196 ~~~l~~~~ 203 (208)
+++|++.+
T Consensus 183 v~~Ll~~~ 190 (192)
T 2rfm_A 183 IKIFTEVR 190 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99998764
No 43
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.7e-35 Score=224.33 Aligned_cols=206 Identities=23% Similarity=0.254 Sum_probs=161.6
Q ss_pred Ccccccc-cCcHHHHHHHHcCChHHHHHHHHHhh-------------------------------hhhccCCCCCCchHH
Q 028517 2 DMDIDQT-IKDKDLFKAAETGDSSTFKSLSKQQL-------------------------------LKSLSLRNDDDRTLL 49 (208)
Q Consensus 2 ~~~~~~~-~~~~~l~~a~~~g~~~~~~~l~~~~~-------------------------------~~~~~~~~~~g~t~L 49 (208)
|++..+. .|.||||.|++.|+.+++++|++.+. ..+++..+..|.|||
T Consensus 50 dvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l 129 (337)
T 4g8k_A 50 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAF 129 (337)
T ss_dssp CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHH
T ss_pred CCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHH
Confidence 3444443 47788888888888888888887542 113345567788888
Q ss_pred HHHHhcCCHHHHHHHHhcccccccc-------cccCCCCCcHHHHHHhcCCHHHHHHHHh-CCCCCCCCCCCCchHHHHH
Q 028517 50 HVAASCGHPEVVEILLSVDESANVV-------NAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYA 121 (208)
Q Consensus 50 ~~A~~~g~~~~~~~ll~~~~~~~~~-------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~l~~a 121 (208)
|+|+..|+.++++++++.+.+.... ...+..|.||||.|+..|+.+++++|++ .|++++.++..|.++++.+
T Consensus 130 ~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~ 209 (337)
T 4g8k_A 130 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 209 (337)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred HHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHH
Confidence 8888888888888888777654321 2234567889999999999999999886 5888888888888888877
Q ss_pred HHcCC----HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCCcccc
Q 028517 122 ASKGW----LKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE-GAEVDATDKAGQTPLMNAVICYNKEFS 196 (208)
Q Consensus 122 ~~~~~----~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~~ 196 (208)
+..+. ..++++|+++|++++.++..|.||||.|+..|+.+++++|++. |++++.+|.+|.||||+|++.|+.+++
T Consensus 210 ~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv 289 (337)
T 4g8k_A 210 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 289 (337)
T ss_dssp HHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHH
Confidence 65443 3477888888889988888999999999999999999999975 899999999999999999999999999
Q ss_pred ccccccccccC
Q 028517 197 GCSSSNKTWSG 207 (208)
Q Consensus 197 ~~l~~~~~~~~ 207 (208)
++|+++++..+
T Consensus 290 ~~Ll~~GAd~n 300 (337)
T 4g8k_A 290 ELLCKRGASTD 300 (337)
T ss_dssp HHHHTTSCSST
T ss_pred HHHHHCCCCCC
Confidence 99999887654
No 44
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.1e-36 Score=216.58 Aligned_cols=180 Identities=26% Similarity=0.317 Sum_probs=163.7
Q ss_pred CChHHHHHHHHHhhhhhcc-CCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHH
Q 028517 21 GDSSTFKSLSKQQLLKSLS-LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99 (208)
Q Consensus 21 g~~~~~~~l~~~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 99 (208)
|+.+++++|++.+. ++. ..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|+..|+.+++++
T Consensus 2 g~~~~i~~Ll~~g~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~ 76 (223)
T 2f8y_A 2 DAPAVISDFIYQGA--SLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD---ANIQDNMGRTPLHAAVSADAQGVFQI 76 (223)
T ss_dssp ---CCEETTEETTC--CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHcCC--CcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 67778888887662 333 3478999999999999999999999998776 56678899999999999999999999
Q ss_pred HHhCCC-CCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCC
Q 028517 100 LLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDK 178 (208)
Q Consensus 100 Ll~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~ 178 (208)
|++.+. .++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++.++.
T Consensus 77 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 156 (223)
T 2f8y_A 77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 156 (223)
T ss_dssp HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence 999886 8888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhCCccccccccccccc
Q 028517 179 AGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 179 ~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
.|.||||+|+..|+.+++++|+++++.
T Consensus 157 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 183 (223)
T 2f8y_A 157 REETPLFLAAREGSYETAKVLLDHFAN 183 (223)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999998764
No 45
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=2.3e-35 Score=202.32 Aligned_cols=157 Identities=28% Similarity=0.398 Sum_probs=129.7
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 028517 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123 (208)
Q Consensus 44 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~ 123 (208)
.|.||||.|+..|+.+++++|++.+.. ++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV---INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC---cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 467888888888888888888876644 56667788888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccc
Q 028517 124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNK 203 (208)
Q Consensus 124 ~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~ 203 (208)
.++.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+++|+..|+.+++++|+++.
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888887754
No 46
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=3e-35 Score=202.73 Aligned_cols=169 Identities=21% Similarity=0.293 Sum_probs=130.1
Q ss_pred cHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHh
Q 028517 11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS 90 (208)
Q Consensus 11 ~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~ 90 (208)
.++|+.|++.|+.+.++.|++.+ ....+..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|+.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKERESALSLAST 78 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---chhhcccCCCHHHHHHH
Confidence 46788888888888888888766 344666777888888888888888888888877665 45566778888888888
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcC
Q 028517 91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170 (208)
Q Consensus 91 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~ 170 (208)
.++.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.|||++|+..|+.+++++|++++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCCCCCCCH
Q 028517 171 AEVDATDKAGQTP 183 (208)
Q Consensus 171 ~~~~~~~~~g~t~ 183 (208)
+++..++..|.||
T Consensus 159 ~~~~~~~~~~~~p 171 (172)
T 3v30_A 159 LKLFQSNLVPADP 171 (172)
T ss_dssp HHHSCC-------
T ss_pred HHHhcccCCCCCC
Confidence 8777777777765
No 47
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=5.6e-35 Score=200.85 Aligned_cols=160 Identities=38% Similarity=0.538 Sum_probs=145.7
Q ss_pred CCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 028517 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120 (208)
Q Consensus 41 ~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~ 120 (208)
....+.++|+.|+..|+.+++++|++.+.+ ++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGAD---VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL 86 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence 345678899999999999999999988766 56678889999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccc
Q 028517 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSS 200 (208)
Q Consensus 121 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~ 200 (208)
|+..++.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|+
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 028517 201 SNK 203 (208)
Q Consensus 201 ~~~ 203 (208)
+.+
T Consensus 167 ~~G 169 (169)
T 2y1l_E 167 KLN 169 (169)
T ss_dssp TC-
T ss_pred HcC
Confidence 764
No 48
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=7.6e-35 Score=200.67 Aligned_cols=158 Identities=27% Similarity=0.366 Sum_probs=149.2
Q ss_pred CchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHc
Q 028517 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK 124 (208)
Q Consensus 45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~ 124 (208)
+.+|||.|+..|+.++++++++.+... ++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNL--VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGG--GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCccc--ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC
Confidence 578999999999999999999876543 677788999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517 125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT 204 (208)
Q Consensus 125 ~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 204 (208)
++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|++++.
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (172)
T 3v30_A 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159 (172)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998754
No 49
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=6.7e-35 Score=198.99 Aligned_cols=157 Identities=28% Similarity=0.335 Sum_probs=130.7
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHH
Q 028517 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123 (208)
Q Consensus 44 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~ 123 (208)
...||||.|+..|+.+++++|++.+.+ ++..+..|.||||.|+. |+.+++++|+++|++++.++..|.||+|+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 79 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVN---VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR 79 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCC---TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCC---ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 456888888888888888888876655 56667788888888888 88888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517 124 KGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE-VDATDKAGQTPLMNAVICYNKEFSGCSSSN 202 (208)
Q Consensus 124 ~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 202 (208)
.++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||+++|+..|+.+++++|+++
T Consensus 80 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 80 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888887 478888888888888888888888888887
Q ss_pred cc
Q 028517 203 KT 204 (208)
Q Consensus 203 ~~ 204 (208)
++
T Consensus 160 GA 161 (162)
T 1ihb_A 160 GA 161 (162)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 50
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-35 Score=221.08 Aligned_cols=183 Identities=30% Similarity=0.412 Sum_probs=166.1
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (208)
+++..+..+.++||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|
T Consensus 65 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g 139 (299)
T 1s70_B 65 DINYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH---VGAVNSEG 139 (299)
T ss_dssp CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC---CCCcCCCC
Confidence 56778889999999999999999999999865 57788899999999999999999999999998876 56678899
Q ss_pred CcHHHHHHhcCCHHHHHHHHhC-CCC--------------------------CCCCCCCCchHHHHHHHcCCHHHHHHHH
Q 028517 82 WAPIHSAASIGNVTIVEMLLSK-GAD--------------------------VNLKNDGGRTALHYAASKGWLKIVELLI 134 (208)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~Ll~~-~~~--------------------------~~~~~~~~~~~l~~a~~~~~~~~~~~ll 134 (208)
.|||+.|+..++.+++++++.. +.+ ....+..|.||||+|+..|+.+++++|+
T Consensus 140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 219 (299)
T 1s70_B 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219 (299)
T ss_dssp CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH
Confidence 9999999999999999887763 332 2235668999999999999999999999
Q ss_pred HcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 028517 135 SRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVI 189 (208)
Q Consensus 135 ~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~ 189 (208)
++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+.
T Consensus 220 ~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred HcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999965
No 51
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.5e-34 Score=217.92 Aligned_cols=197 Identities=29% Similarity=0.320 Sum_probs=172.2
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhh--------hccCCCCCCchHHHHHHhcCCHHHHHHHHh-cccccc
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLK--------SLSLRNDDDRTLLHVAASCGHPEVVEILLS-VDESAN 72 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~--------~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~-~~~~~~ 72 (208)
+++..+..+.++++.|+..|+.++++++++.+... .....+..|.||||+|+..|+.+++++|++ .+.+
T Consensus 117 ~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad-- 194 (337)
T 4g8k_A 117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-- 194 (337)
T ss_dssp CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC--
T ss_pred hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC--
Confidence 56778889999999999999999999999876321 122345678999999999999999999996 4555
Q ss_pred cccccCCCCCcHHHHHHhcCC----HHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCC
Q 028517 73 VVNAVDEEGWAPIHSAASIGN----VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVG 147 (208)
Q Consensus 73 ~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~ 147 (208)
++..+..|.|+++.++..+. .+++++|+++|++++.++..|.||||+|+..+..++++.|++. |++++.+|..|
T Consensus 195 -~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G 273 (337)
T 4g8k_A 195 -VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 273 (337)
T ss_dssp -TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTS
T ss_pred -cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCC
Confidence 67788899999998765433 4688999999999999999999999999999999999999985 89999999999
Q ss_pred CcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517 148 CTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS 206 (208)
Q Consensus 148 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 206 (208)
.||||+|+..|+.+++++|+++|++++. .+||++|++.|+.++|++|+++++..
T Consensus 274 ~TpL~~A~~~g~~~iv~~Ll~~GAd~n~-----~~~L~~A~~~~~~~iv~~Ll~~GA~~ 327 (337)
T 4g8k_A 274 KTALLLAVELKLKKIAELLCKRGASTDC-----GDLVMTARRNYDHSLVKVLLSHGAKE 327 (337)
T ss_dssp CBHHHHHHHTTCHHHHHHHHTTSCSSTT-----CCHHHHHHHTTCHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCC-----CCHHHHHHHcCCHHHHHHHHHCcCCC
Confidence 9999999999999999999999999875 46999999999999999999998754
No 52
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.6e-35 Score=212.06 Aligned_cols=187 Identities=24% Similarity=0.256 Sum_probs=169.0
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccc---ccccccC
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESA---NVVNAVD 78 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~---~~~~~~~ 78 (208)
+++..+..+.++|+.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+..+ ...+..+
T Consensus 37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 114 (236)
T 1ikn_D 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114 (236)
T ss_dssp CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC
Confidence 46778889999999999999999999999765 577888999999999999999999999999987642 2356677
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCC-CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhh
Q 028517 79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAST 157 (208)
Q Consensus 79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~ 157 (208)
..|.||||.|+..|+.+++++|+++|++++.++. .|.||+|+|+..|+.+++++|+++|++++..+..|.|||++|+..
T Consensus 115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~ 194 (236)
T 1ikn_D 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 194 (236)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHcc
Confidence 8899999999999999999999999999999997 999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHh
Q 028517 158 GNSALCELLIEEGAEVD--ATDKAGQTPLMNAVIC 190 (208)
Q Consensus 158 ~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~~A~~~ 190 (208)
|+.+++++|+++|++.. .++..|.|+.+.+...
T Consensus 195 ~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 195 PSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp SCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred CchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 99999999999999875 7888899887765443
No 53
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=100.00 E-value=7.7e-35 Score=199.35 Aligned_cols=161 Identities=32% Similarity=0.475 Sum_probs=133.9
Q ss_pred CCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 028517 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120 (208)
Q Consensus 41 ~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~ 120 (208)
.+..+.|||+.|+..|+.+++++|++.+.. ..+..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV--NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHN 81 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCC--CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHH
Confidence 356678888888888888888888874432 255666778888888888888888888888888888888888899999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccc
Q 028517 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSS 200 (208)
Q Consensus 121 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~ 200 (208)
|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|.+|.||+++|+. ++.+++++|.
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 998888999999998888888888888899999999899999999998888888888889999988776 8888888888
Q ss_pred cccc
Q 028517 201 SNKT 204 (208)
Q Consensus 201 ~~~~ 204 (208)
++++
T Consensus 161 ~~gA 164 (165)
T 3twr_A 161 GDAA 164 (165)
T ss_dssp TC--
T ss_pred hccc
Confidence 8764
No 54
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=100.00 E-value=3.3e-34 Score=193.89 Aligned_cols=151 Identities=32% Similarity=0.423 Sum_probs=132.2
Q ss_pred CchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHc
Q 028517 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK 124 (208)
Q Consensus 45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~ 124 (208)
..++|+.|+..|+.+++++|++.+... + .+..|.||||.|+..|+.+++++|++.|++++.++..|.||+|+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~---~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF---T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC---C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC---C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 357888999999999999888877642 2 467788999999999999999999998888888888899999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccc
Q 028517 125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCS 199 (208)
Q Consensus 125 ~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 199 (208)
++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..|+.+++++|
T Consensus 78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999999988888899999999999999999999999999999999999999999999999988876
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=9.5e-34 Score=198.52 Aligned_cols=163 Identities=26% Similarity=0.291 Sum_probs=153.4
Q ss_pred cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCC
Q 028517 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW 82 (208)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~ 82 (208)
.+..+..+.++|+.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~ 102 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---VNTKDFSGK 102 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTSC
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCC
Confidence 4567889999999999999999999999876 47778889999999999999999999999998776 567788999
Q ss_pred cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHH
Q 028517 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSAL 162 (208)
Q Consensus 83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~ 162 (208)
||||.|+..++.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||+++|+..|+.++
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcC
Q 028517 163 CELLIEEG 170 (208)
Q Consensus 163 ~~~Ll~~~ 170 (208)
+++|+++|
T Consensus 183 v~~Ll~~~ 190 (192)
T 2rfm_A 183 IKIFTEVR 190 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99999864
No 56
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=5e-35 Score=217.02 Aligned_cols=188 Identities=15% Similarity=0.130 Sum_probs=169.4
Q ss_pred ccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC-C
Q 028517 4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG-W 82 (208)
Q Consensus 4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~-~ 82 (208)
|+....+.+|||.|+..|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..| .
T Consensus 56 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~~ 130 (285)
T 3kea_A 56 LKNLLENEFPLHQAATLEDTKIVKILLFSG--LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWK 130 (285)
T ss_dssp GGSCCTTCCHHHHHTTSSSCHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG---GGGCSSSGGG
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCccCCCCCC
Confidence 334445899999999999999999999876 57778899999999999999999999999998876 56777788 7
Q ss_pred cHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH-HHHHHhhCCHH
Q 028517 83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTA-LHRGASTGNSA 161 (208)
Q Consensus 83 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~-l~~A~~~~~~~ 161 (208)
||||.|+..|+.+++++|+++|.+.... ..|.||+|+|+..|+.+++++|+++|++++..+..|.|| ||+|+..|+.+
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~ 209 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIE 209 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHH
Confidence 9999999999999999999999876322 289999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517 162 LCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT 204 (208)
Q Consensus 162 ~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 204 (208)
++++|+++|++++..+. .|+..|+.+++++|++++.
T Consensus 210 ~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~ 245 (285)
T 3kea_A 210 MLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHV 245 (285)
T ss_dssp HHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCC
Confidence 99999999999998873 5678999999999998764
No 57
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=100.00 E-value=1.6e-33 Score=192.13 Aligned_cols=158 Identities=31% Similarity=0.442 Sum_probs=146.1
Q ss_pred cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (208)
Q Consensus 9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (208)
...++|+.|++.|+.+++++|++.+ .+++..+..|.||||+|+. |+.+++++|++.+.+ ++..+..|.||||.|
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A 77 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN---PDLKDRTGFAVIHDA 77 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC---CCCCCCCCCCHHHHH
Confidence 4679999999999999999999755 5777889999999999999 999999999998776 567788999999999
Q ss_pred HhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 028517 89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKVGCTALHRGASTGNSALCELLI 167 (208)
Q Consensus 89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~t~l~~A~~~~~~~~~~~Ll 167 (208)
+..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++ ++..+..|.|||++|+..|+.+++++|+
T Consensus 78 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 157 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157 (162)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 5889999999999999999999999999
Q ss_pred HcCCC
Q 028517 168 EEGAE 172 (208)
Q Consensus 168 ~~~~~ 172 (208)
++|+|
T Consensus 158 ~~GAd 162 (162)
T 1ihb_A 158 ANGAG 162 (162)
T ss_dssp HTC--
T ss_pred HhCCC
Confidence 99975
No 58
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=100.00 E-value=5.3e-33 Score=190.97 Aligned_cols=158 Identities=40% Similarity=0.565 Sum_probs=147.6
Q ss_pred ccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHH
Q 028517 8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87 (208)
Q Consensus 8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~ 87 (208)
..+.++|+.|++.|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD---VNAVDHAGMTPLRL 86 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHH
Confidence 44578999999999999999999876 57778899999999999999999999999998776 56778899999999
Q ss_pred HHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 028517 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167 (208)
Q Consensus 88 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll 167 (208)
|+..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||++.|+..|+.+++++|+
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcC
Q 028517 168 EEG 170 (208)
Q Consensus 168 ~~~ 170 (208)
++|
T Consensus 167 ~~G 169 (169)
T 2y1l_E 167 KLN 169 (169)
T ss_dssp TC-
T ss_pred HcC
Confidence 875
No 59
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=100.00 E-value=1.8e-33 Score=195.02 Aligned_cols=168 Identities=26% Similarity=0.329 Sum_probs=143.7
Q ss_pred cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (208)
Q Consensus 9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (208)
.+.++|+.|++.|+.+.+++|++.. +.+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---INVMNRGDDTPLHLA 79 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCCHHHHH
Confidence 4567889999999999999998875 456777888899999999999999999999988766 566777889999999
Q ss_pred HhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHH
Q 028517 89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168 (208)
Q Consensus 89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~ 168 (208)
+..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||++.|+..++.+++++|++
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~ 159 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888899999999999999999999999999998889999999999998889999999999
Q ss_pred cCCCCCCCCCCC
Q 028517 169 EGAEVDATDKAG 180 (208)
Q Consensus 169 ~~~~~~~~~~~g 180 (208)
+|++++..+..+
T Consensus 160 ~g~~~~~~~~~~ 171 (179)
T 3f6q_A 160 MGQNLNRIPYKD 171 (179)
T ss_dssp TTCCCSCBCCCC
T ss_pred hhcCcccCCccc
Confidence 998887765443
No 60
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=100.00 E-value=2.8e-33 Score=191.93 Aligned_cols=160 Identities=23% Similarity=0.294 Sum_probs=150.1
Q ss_pred cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (208)
Q Consensus 9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (208)
.+.++||.|++.|+.+.+++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A 76 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD---PQLLGKGRESALSLA 76 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCcCCCCCcHHHHH
Confidence 4789999999999999999999876 56788899999999999999999999999998776 566788999999999
Q ss_pred HhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHH
Q 028517 89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIE 168 (208)
Q Consensus 89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~ 168 (208)
+..++.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||+++|+..|+.+++++|++
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 77 CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 028517 169 EGAEV 173 (208)
Q Consensus 169 ~~~~~ 173 (208)
++.++
T Consensus 157 ~~~~~ 161 (167)
T 3v31_A 157 HLLKL 161 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86544
No 61
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=100.00 E-value=1.7e-33 Score=190.86 Aligned_cols=154 Identities=26% Similarity=0.383 Sum_probs=130.0
Q ss_pred CchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHc
Q 028517 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK 124 (208)
Q Consensus 45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~ 124 (208)
+.|||+.|+..|+.+++++|++. . ....+..+..|.||||. +..|+.+++++|+++|++++.++..|.||+|+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-E-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-T-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-h-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence 46788888888888888888876 2 11256677788888888 888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517 125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSN 202 (208)
Q Consensus 125 ~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 202 (208)
|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++ ++++.++.+|.||+++|+..|+.+++++|+++
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 888888888888888888888888888888888888888888888 88888888888888888888888888888765
No 62
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-34 Score=217.18 Aligned_cols=178 Identities=18% Similarity=0.179 Sum_probs=147.2
Q ss_pred Cccc-ccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCC---HHHHHHHHhccccccccccc
Q 028517 2 DMDI-DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH---PEVVEILLSVDESANVVNAV 77 (208)
Q Consensus 2 ~~~~-~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~---~~~~~~ll~~~~~~~~~~~~ 77 (208)
|++. .+..+.+|||.|+..|+.+++++|++.+ .+++.++..|.||||+|+..|+ .++++.|++.+.. .++..
T Consensus 122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G--ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~--~~~~~ 197 (327)
T 1sw6_A 122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP--CLILE 197 (327)
T ss_dssp CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG--GGGEE
T ss_pred CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc--cccCC
Confidence 5677 7899999999999999999999999876 5788889999999999999998 5666777665422 26778
Q ss_pred CCCCCcHHHHHHh----cCCHHHHHHHHhC--------------------CCCCCCCCCCCchHHHHHHHcCCHHHHHHH
Q 028517 78 DEEGWAPIHSAAS----IGNVTIVEMLLSK--------------------GADVNLKNDGGRTALHYAASKGWLKIVELL 133 (208)
Q Consensus 78 ~~~~~~~l~~a~~----~~~~~~~~~Ll~~--------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~l 133 (208)
+..|.||||+|+. .|+.+++++|++. |++++.++..|.||++.|+. +++|
T Consensus 198 d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~L 271 (327)
T 1sw6_A 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWI 271 (327)
T ss_dssp CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHH
T ss_pred CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHH
Confidence 8899999999999 8999999999987 88999999999999999985 8899
Q ss_pred HHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Q 028517 134 ISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICY 191 (208)
Q Consensus 134 l~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~ 191 (208)
+++ +++.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|
T Consensus 272 l~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 272 IAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred HHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 988 57789999999999999999999999999999999999999999999998764
No 63
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=100.00 E-value=1e-33 Score=196.33 Aligned_cols=161 Identities=29% Similarity=0.385 Sum_probs=149.6
Q ss_pred CCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHH
Q 028517 43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA 122 (208)
Q Consensus 43 ~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~ 122 (208)
..+.++|+.|+..|+.+++++|++.+.. .++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 3578999999999999999999986433 26778889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517 123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSN 202 (208)
Q Consensus 123 ~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 202 (208)
..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|++.
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~ 160 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160 (179)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccc
Q 028517 203 KTW 205 (208)
Q Consensus 203 ~~~ 205 (208)
+..
T Consensus 161 g~~ 163 (179)
T 3f6q_A 161 GQN 163 (179)
T ss_dssp TCC
T ss_pred hcC
Confidence 754
No 64
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=100.00 E-value=2.3e-33 Score=192.01 Aligned_cols=162 Identities=34% Similarity=0.444 Sum_probs=147.5
Q ss_pred cccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcH
Q 028517 5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP 84 (208)
Q Consensus 5 ~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 84 (208)
..+..+.++|+.|++.|+.+.+++|++.. ..+....+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||
T Consensus 3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~ 78 (165)
T 3twr_A 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD---VHAKDKGGLVP 78 (165)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred CCcchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC---CCccCCCCCCH
Confidence 34677899999999999999999999765 466677788899999999999999999999998876 67778899999
Q ss_pred HHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHH
Q 028517 85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCE 164 (208)
Q Consensus 85 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~ 164 (208)
||.|+..++.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||+++|+. ++.++++
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~ 157 (165)
T 3twr_A 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQD 157 (165)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHH
T ss_pred HHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877 9999999
Q ss_pred HHHHcCC
Q 028517 165 LLIEEGA 171 (208)
Q Consensus 165 ~Ll~~~~ 171 (208)
+|+++|+
T Consensus 158 ~L~~~gA 164 (165)
T 3twr_A 158 LLRGDAA 164 (165)
T ss_dssp HHHTC--
T ss_pred HHhhccc
Confidence 9999875
No 65
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.3e-34 Score=221.66 Aligned_cols=160 Identities=18% Similarity=0.228 Sum_probs=144.2
Q ss_pred CCCCCchHHHHHHhcC--CHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCC-----CCCCCCC
Q 028517 41 RNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD-----VNLKNDG 113 (208)
Q Consensus 41 ~~~~g~t~L~~A~~~g--~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~ 113 (208)
.+..|.||||+|+..| +.+++++|++.+.+ ++..+..|.||||.|+..|+.+++++|+++|++ ++.++..
T Consensus 134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 210 (364)
T 3ljn_A 134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGAS---PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210 (364)
T ss_dssp EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT
T ss_pred CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC
Confidence 5667899999999999 99999999998776 567788999999999999999999999999988 9999999
Q ss_pred CchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCC------------CCCCCCC
Q 028517 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVD------------ATDKAGQ 181 (208)
Q Consensus 114 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~------------~~~~~g~ 181 (208)
|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..|+.+++++|+++|++++ ..+..+.
T Consensus 211 g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (364)
T 3ljn_A 211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290 (364)
T ss_dssp CCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999986642 2456789
Q ss_pred CHHHHHHHhCCccccccccccc
Q 028517 182 TPLMNAVICYNKEFSGCSSSNK 203 (208)
Q Consensus 182 t~l~~A~~~~~~~~~~~l~~~~ 203 (208)
+|+++|+..+..+.+..|++++
T Consensus 291 ~~l~~aa~~~~~~~v~~ll~~~ 312 (364)
T 3ljn_A 291 LDFVPAAADPSKQEVLQLLQEK 312 (364)
T ss_dssp CTTSCSSCCHHHHHHHHHHHHH
T ss_pred ccchhhhhccCHHHHHHHHHHH
Confidence 9999999988777777766543
No 66
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=9.9e-33 Score=198.68 Aligned_cols=176 Identities=20% Similarity=0.239 Sum_probs=151.7
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhh---hccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccc--
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLK---SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA-- 76 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~---~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~-- 76 (208)
+++..+..+.++|+.|+..|+.+++++|++.+... .....+..|.||||+|+..|+.+++++|++.+.+......
T Consensus 29 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~ 108 (232)
T 2rfa_A 29 EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS 108 (232)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG
T ss_pred CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc
Confidence 56778899999999999999999999999876321 1145677999999999999999999999998877432211
Q ss_pred --------cCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHH----HHHHHcCCCC----
Q 028517 77 --------VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV----ELLISRGAKI---- 140 (208)
Q Consensus 77 --------~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~----~~ll~~~~~~---- 140 (208)
.+..|.||||.|+..|+.+++++|+++|++++.+|..|.||+|+|+..++.+++ ++|+++|++.
T Consensus 109 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~ 188 (232)
T 2rfa_A 109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS 188 (232)
T ss_dssp GGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCC
T ss_pred ceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhh
Confidence 123799999999999999999999999999999999999999999999999988 9999999987
Q ss_pred --CCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCC
Q 028517 141 --NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATD 177 (208)
Q Consensus 141 --~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~ 177 (208)
+..+..|.|||++|+..|+.+++++|+++|.....+.
T Consensus 189 ~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~~ 227 (232)
T 2rfa_A 189 LELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAH 227 (232)
T ss_dssp GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred hhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhhh
Confidence 5788999999999999999999999999987665443
No 67
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.5e-32 Score=193.56 Aligned_cols=165 Identities=26% Similarity=0.324 Sum_probs=152.6
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCC
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG 81 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~ 81 (208)
+++..+..+.++|+.|++.|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.. .++..+..|
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~g 106 (201)
T 3hra_A 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG--ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP--DLNKHNRYG 106 (201)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC--CTTCCCTTS
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCc--ccccccCCC
Confidence 56778889999999999999999999999876 57788899999999999999999999999954332 267778899
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCC-CCCCCCCCCCchHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 028517 82 WAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGW-----LKIVELLISRGAKINSKDKVGCTALHRGA 155 (208)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~~~~~-----~~~~~~ll~~~~~~~~~~~~~~t~l~~A~ 155 (208)
.||||.|+..|+.+++++|+++| .+++.++..|.||+|+|+..+. .+++++|+++|++++..+..|.|||++|+
T Consensus 107 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 186 (201)
T 3hra_A 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN 186 (201)
T ss_dssp CCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Confidence 99999999999999999999999 8999999999999999999998 99999999999999999999999999999
Q ss_pred hhCCHHHHHHHHHcC
Q 028517 156 STGNSALCELLIEEG 170 (208)
Q Consensus 156 ~~~~~~~~~~Ll~~~ 170 (208)
..|+.+++++|+++|
T Consensus 187 ~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 187 QKGYTEISKILAQYN 201 (201)
T ss_dssp HHTCHHHHHHHHTCC
T ss_pred HcCCHhHHHHHHhcC
Confidence 999999999999876
No 68
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=100.00 E-value=6.2e-32 Score=182.69 Aligned_cols=151 Identities=36% Similarity=0.471 Sum_probs=141.0
Q ss_pred CcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517 10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA 89 (208)
Q Consensus 10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~ 89 (208)
..++|+.|++.|+.+.+++|++.+. +.. .+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~--~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~ 75 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGA--PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---RDARTKVDRTPLHMAA 75 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTC--CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCC--CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHH
Confidence 3589999999999999999998873 333 578899999999999999999999998766 5677889999999999
Q ss_pred hcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517 90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166 (208)
Q Consensus 90 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L 166 (208)
..|+.+++++|+++|++++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||++.|+..|+.+++++|
T Consensus 76 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987
No 69
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.5e-32 Score=202.43 Aligned_cols=176 Identities=22% Similarity=0.274 Sum_probs=145.6
Q ss_pred ccccCcHHHHHHHHc---CChHHHHHHHHHhhhh-------h--ccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccc
Q 028517 6 DQTIKDKDLFKAAET---GDSSTFKSLSKQQLLK-------S--LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73 (208)
Q Consensus 6 ~~~~~~~~l~~a~~~---g~~~~~~~l~~~~~~~-------~--~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~ 73 (208)
.+..+.++||.|+.. |+.+++++|++.+... + ....+..|.||||+|+..|+.+++++|++.+.+.
T Consensus 50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-- 127 (273)
T 2pnn_A 50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-- 127 (273)
T ss_dssp CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT--
T ss_pred cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc--
Confidence 377899999999987 9999999999986321 1 1225678999999999999999999999988774
Q ss_pred ccccCC--------------CCCcHHHHHHhcCCHHHHHHHHh---CCCCCCCCCCCCchHHHHHHHcCC---------H
Q 028517 74 VNAVDE--------------EGWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAASKGW---------L 127 (208)
Q Consensus 74 ~~~~~~--------------~~~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~l~~a~~~~~---------~ 127 (208)
+..+. .|.||||.|+..|+.+++++|++ .|++++.++..|.||||+|+..++ .
T Consensus 128 -~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 206 (273)
T 2pnn_A 128 -QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT 206 (273)
T ss_dssp -TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred -CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence 44444 79999999999999999999999 999999999999999999999888 7
Q ss_pred HHHHHHHHcCCCCC-------CCCCCCCcHHHHHHhhCCHHHHHHHHHcCC-CCCCCCCCCCCHH
Q 028517 128 KIVELLISRGAKIN-------SKDKVGCTALHRGASTGNSALCELLIEEGA-EVDATDKAGQTPL 184 (208)
Q Consensus 128 ~~~~~ll~~~~~~~-------~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~g~t~l 184 (208)
+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|+ |+......+.+|-
T Consensus 207 ~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 207 SMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 99999999999886 488999999999999999999999999998 8887777666653
No 70
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=100.00 E-value=5.1e-32 Score=183.60 Aligned_cols=154 Identities=27% Similarity=0.391 Sum_probs=145.0
Q ss_pred CcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517 10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA 89 (208)
Q Consensus 10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~ 89 (208)
+.++|+.|++.|+.+.+++|++. ...+++..+..|.||||+ +..|+.+++++|++.+.+ ++..+..|.||||.|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~ 76 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS---PNVQDTSGTSPVHDAA 76 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHH
Confidence 46899999999999999999987 356778889999999999 999999999999998876 5777889999999999
Q ss_pred hcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHc
Q 028517 90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEE 169 (208)
Q Consensus 90 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~ 169 (208)
..|+.+++++|+++|++++.++..|.||+|+|+..|+.+++++|+++ ++++..+..|.|||++|+..|+.+++++|+++
T Consensus 77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999875
No 71
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=211.92 Aligned_cols=189 Identities=23% Similarity=0.255 Sum_probs=165.0
Q ss_pred ccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCc
Q 028517 4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA 83 (208)
Q Consensus 4 ~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~ 83 (208)
+..+..+.++|+.|++.|+.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.|
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t 89 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIVDFLITAGAN---VNSPDSHGWT 89 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCC
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCC
Confidence 344566778899999999999999999866 47778899999999999999999999999998776 6777889999
Q ss_pred HHHHHHhcCCHHHHHHHHhCCCCCCCCC-CCCchHHHHH--HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCH
Q 028517 84 PIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYA--ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160 (208)
Q Consensus 84 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a--~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~ 160 (208)
|||+|+..|+.+++++|++.|++++.++ ..|.||+++| +..++.+++++|+++|++++..+..+.||++.++..+.
T Consensus 90 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~- 168 (229)
T 2vge_A 90 PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG- 168 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST-
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc-
Confidence 9999999999999999999999999886 5999999999 89999999999999999999999888899885554433
Q ss_pred HHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhCCcccccccc
Q 028517 161 ALCELLIEEGAE--VDATDKAGQTPLMNAVICYNKEFSGCSS 200 (208)
Q Consensus 161 ~~~~~Ll~~~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~l~ 200 (208)
.++|++.|++ ++.+|.+|.||||+|+..|+.++|+.++
T Consensus 169 --~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 169 --DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp --TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred --cccCccccccccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 2567788888 6778999999999999999999998644
No 72
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=5.7e-32 Score=197.52 Aligned_cols=165 Identities=19% Similarity=0.207 Sum_probs=147.5
Q ss_pred ccccCcHHHHHHHHc---CChHHHHHHHHHhhhhh---------ccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccc
Q 028517 6 DQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKS---------LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73 (208)
Q Consensus 6 ~~~~~~~~l~~a~~~---g~~~~~~~l~~~~~~~~---------~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~ 73 (208)
.+..+.++||.|+.. |+.+++++|++.+.... ....+..|.||||+|+..|+.+++++|++.+.+
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~--- 115 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD--- 115 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC---
Confidence 688999999999999 99999999998774221 012346799999999999999999999998877
Q ss_pred ccccCCC-------------CCcHHHHHHhcCCHHHHHHHHh---CCCCCCCCCCCCchHHHHHHH--cCCHH-------
Q 028517 74 VNAVDEE-------------GWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAAS--KGWLK------- 128 (208)
Q Consensus 74 ~~~~~~~-------------~~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~l~~a~~--~~~~~------- 128 (208)
++..+.. |.||||.|+..|+.+++++|++ +|++++.+|..|.||||+|+. .++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 195 (256)
T 2etb_A 116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195 (256)
T ss_dssp TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence 4445544 9999999999999999999999 999999999999999999999 78888
Q ss_pred HHHHHHHcCCCC-------CCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCC
Q 028517 129 IVELLISRGAKI-------NSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173 (208)
Q Consensus 129 ~~~~ll~~~~~~-------~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~ 173 (208)
++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|.+.
T Consensus 196 iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 999999999999 889999999999999999999999999987654
No 73
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.98 E-value=9.6e-32 Score=198.47 Aligned_cols=164 Identities=24% Similarity=0.319 Sum_probs=152.7
Q ss_pred cccccccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHH-----hcCCHHHHHHHHhccccccccccc
Q 028517 3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAA-----SCGHPEVVEILLSVDESANVVNAV 77 (208)
Q Consensus 3 ~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~-----~~g~~~~~~~ll~~~~~~~~~~~~ 77 (208)
++..|..|.|+||.|++.|+.+++++|++.+ ..+++..+..|.||||+|+ ..++.+++++|++.+.. ....
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~---~~~~ 179 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSG-VCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI---NAKA 179 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT---TCCC
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC---cccc
Confidence 5778999999999999999999999999877 3477788999999999999 66889999999988755 5667
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHh
Q 028517 78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKVGCTALHRGAS 156 (208)
Q Consensus 78 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~t~l~~A~~ 156 (208)
+..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++ .|++++..|..|.|||++|+.
T Consensus 180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~ 259 (276)
T 4hbd_A 180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD 259 (276)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred hCCHHHHHHHHHcC
Q 028517 157 TGNSALCELLIEEG 170 (208)
Q Consensus 157 ~~~~~~~~~Ll~~~ 170 (208)
.|+.+++++|++++
T Consensus 260 ~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 260 AGQSEIASMLYSRM 273 (276)
T ss_dssp HTCHHHHHHHHHHC
T ss_pred cCCHHHHHHHHhcc
Confidence 99999999999873
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=1.2e-32 Score=199.39 Aligned_cols=188 Identities=19% Similarity=0.187 Sum_probs=138.7
Q ss_pred cccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517 7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86 (208)
Q Consensus 7 ~~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 86 (208)
+..|.++|+.|++.|+.+.++.|++.+. +.+. +..|.||||.|+..|+.+++++|++.+.+ ++..+..|.||||
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~--~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~t~L~ 75 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGM--RVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD---PSLPNDEGITALH 75 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS---CCCCCTTSCCHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCC--Cccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHH
Confidence 3468999999999999999999998774 4333 46789999999999999999999988775 6777889999999
Q ss_pred HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHH--HhhCCHHHH
Q 028517 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGC-TALHRG--ASTGNSALC 163 (208)
Q Consensus 87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-t~l~~A--~~~~~~~~~ 163 (208)
.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..+. ||++.| +..|+.+++
T Consensus 76 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 76 NAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988776 999999 788999999
Q ss_pred HHHHHcCCCCCCC---------CCCCCCHHHHHHHhCCcccccccccc
Q 028517 164 ELLIEEGAEVDAT---------DKAGQTPLMNAVICYNKEFSGCSSSN 202 (208)
Q Consensus 164 ~~Ll~~~~~~~~~---------~~~g~t~l~~A~~~~~~~~~~~l~~~ 202 (208)
++|+++|++++.. +..+.++.+++...|. +++.|...
T Consensus 156 ~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~ 201 (239)
T 1ycs_B 156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRE 201 (239)
T ss_dssp HHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCC
T ss_pred HHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEec
Confidence 9999999888765 5678899998888776 56666543
No 75
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.9e-31 Score=195.11 Aligned_cols=165 Identities=24% Similarity=0.229 Sum_probs=146.2
Q ss_pred ccCcHHHHHHH---HcCChHHHHHHHHHhhh---------hhccCCCCCCchHHHHHHhcCCHHHHHHHHhccccccccc
Q 028517 8 TIKDKDLFKAA---ETGDSSTFKSLSKQQLL---------KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN 75 (208)
Q Consensus 8 ~~~~~~l~~a~---~~g~~~~~~~l~~~~~~---------~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~ 75 (208)
..+.++||.|+ +.|+.+++++|++.+.. ......+..|.||||+|+..|+.+++++|++.+.+. +
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~ 120 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV---H 120 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT---T
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc---C
Confidence 56999999999 78999999999987632 223344558999999999999999999999988774 4
Q ss_pred ccC--------------CCCCcHHHHHHhcCCHHHHHHHHh---CCCCCCCCCCCCchHHHHHHHcCC---------HHH
Q 028517 76 AVD--------------EEGWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAASKGW---------LKI 129 (208)
Q Consensus 76 ~~~--------------~~~~~~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~l~~a~~~~~---------~~~ 129 (208)
..+ ..|.||||.|+..|+.+++++|++ +|++++.+|..|.||||+|+..++ .++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~ 200 (260)
T 3jxi_A 121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200 (260)
T ss_dssp CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence 444 579999999999999999999999 999999999999999999998887 799
Q ss_pred HHHHHHcCCCC-------CCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCC
Q 028517 130 VELLISRGAKI-------NSKDKVGCTALHRGASTGNSALCELLIEEGAEVDA 175 (208)
Q Consensus 130 ~~~ll~~~~~~-------~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~ 175 (208)
+++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|.+...
T Consensus 201 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253 (260)
T ss_dssp HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence 99999999988 67899999999999999999999999999876543
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.97 E-value=6.4e-32 Score=195.47 Aligned_cols=160 Identities=23% Similarity=0.235 Sum_probs=120.1
Q ss_pred CCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 028517 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121 (208)
Q Consensus 42 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a 121 (208)
+..|.||||.|+..++.+.++.|++.|.+.. . +..+.||||.|+..|+.+++++|++.|++++.++..|.||||+|
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~---~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A 77 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK---F-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNA 77 (239)
T ss_dssp ---------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcc---c-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 3468999999999999999999999887743 2 35789999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHH--HHhCCcccccc
Q 028517 122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQ-TPLMNA--VICYNKEFSGC 198 (208)
Q Consensus 122 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~-t~l~~A--~~~~~~~~~~~ 198 (208)
+..|+.+++++|+++|++++..|..|.||||.|+..|+.+++++|+++|++++..+..|. ||+|+| +..|+.+++++
T Consensus 78 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998777 999999 88999999999
Q ss_pred ccccccc
Q 028517 199 SSSNKTW 205 (208)
Q Consensus 199 l~~~~~~ 205 (208)
|++.++.
T Consensus 158 Ll~~~a~ 164 (239)
T 1ycs_B 158 LYGVQEK 164 (239)
T ss_dssp HHHHHHH
T ss_pred HHHhhhc
Confidence 9987653
No 77
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.97 E-value=1.1e-30 Score=177.06 Aligned_cols=145 Identities=23% Similarity=0.332 Sum_probs=118.5
Q ss_pred cCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCch-H
Q 028517 39 SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT-A 117 (208)
Q Consensus 39 ~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~ 117 (208)
...+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|+ .|+.+++++|+++|++++.++..|.| |
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRP 81 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC---TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 34577899999999999999999999998766 6677889999999985 89999999999999999999999999 9
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 028517 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNA 187 (208)
Q Consensus 118 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A 187 (208)
||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||.+-+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999987744
No 78
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.97 E-value=4.7e-30 Score=170.13 Aligned_cols=130 Identities=25% Similarity=0.354 Sum_probs=73.0
Q ss_pred ccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCC-Cch
Q 028517 38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-GRT 116 (208)
Q Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~ 116 (208)
++..+..|.||||.|+..|+.+++++|++.+.+ ++..+..|.||||.|+. ++.+++++|+++|++++.++.. |.|
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD---PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR 80 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC---cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence 344455555555555555555555555555443 34444555555555555 5555555555555555555555 555
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCC
Q 028517 117 ALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGA 171 (208)
Q Consensus 117 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~ 171 (208)
|+|+|+..++.+++++|+++|++++..+..|.|||++|+..++.+++++|+++|+
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 5555555555555555555555555555555555555555555555555555554
No 79
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=2.1e-31 Score=201.09 Aligned_cols=179 Identities=18% Similarity=0.107 Sum_probs=145.2
Q ss_pred HHHHHcCChHHHHHHHHHhhhhhccC-CCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCC
Q 028517 15 FKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN 93 (208)
Q Consensus 15 ~~a~~~g~~~~~~~l~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~ 93 (208)
+.|+..+..++++.|++.+ .+++. .+..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+
T Consensus 102 ~~a~~~~~~~~~~~l~~~g--~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad---~n~~d~~g~TpLh~A~~~g~ 176 (327)
T 1sw6_A 102 HVSFDSLLQEVNDAFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKSVN 176 (327)
T ss_dssp --CHHHHHHHHHHHCTTSC--CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTBCCTTCCCHHHHHHHSSH
T ss_pred HHHHHhhHHHHHHHHHhcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhcc
Confidence 5566666666666666544 57777 799999999999999999999999999877 56788899999999999998
Q ss_pred ---HHHHHHHHhCC-CCCCCCCCCCchHHHHHHH----cCCHHHHHHHHHc--------------------CCCCCCCCC
Q 028517 94 ---VTIVEMLLSKG-ADVNLKNDGGRTALHYAAS----KGWLKIVELLISR--------------------GAKINSKDK 145 (208)
Q Consensus 94 ---~~~~~~Ll~~~-~~~~~~~~~~~~~l~~a~~----~~~~~~~~~ll~~--------------------~~~~~~~~~ 145 (208)
.++++.|++.+ .+++.++..|.||||+|+. .|+.+++++|++. |++++..+.
T Consensus 177 ~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~ 256 (327)
T 1sw6_A 177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNG 256 (327)
T ss_dssp HHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------------
T ss_pred cccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccc
Confidence 78888888876 6788899999999999999 8999999999987 889999999
Q ss_pred CCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517 146 VGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS 206 (208)
Q Consensus 146 ~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 206 (208)
.|.|||+.|+. +++|+++ +++.++.+|.||||+|+..|+.+++++|+++++..
T Consensus 257 ~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~ 309 (327)
T 1sw6_A 257 ERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 309 (327)
T ss_dssp ---CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred cCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999985 8999998 68889999999999999999999999999987654
No 80
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.97 E-value=1.5e-30 Score=172.58 Aligned_cols=130 Identities=26% Similarity=0.294 Sum_probs=125.8
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHHH
Q 028517 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKV-GCTALH 152 (208)
Q Consensus 74 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~t~l~ 152 (208)
++..+..|.||||.|+..|+.+++++|+++|++++.++..|.||+|+|+. ++.+++++|+++|++++..+.. |.||||
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~ 83 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVH 83 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHH
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHH
Confidence 56778899999999999999999999999999999999999999999999 9999999999999999999999 999999
Q ss_pred HHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517 153 RGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT 204 (208)
Q Consensus 153 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 204 (208)
+|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++++|+++++
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 84 DAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999998775
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.97 E-value=5.6e-31 Score=183.33 Aligned_cols=152 Identities=18% Similarity=0.129 Sum_probs=107.8
Q ss_pred CchHHHHHHhcCCHHHHHHHHhcccccccccccC-CCCCcHHHHHHhcCCH----HHHHHHHhCCCCCCCCCCCCchHHH
Q 028517 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASIGNV----TIVEMLLSKGADVNLKNDGGRTALH 119 (208)
Q Consensus 45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~l~ 119 (208)
++++|+.|+..|+.+.++.++..+. +..+ ..|.||||+|+..++. +++++|+++|++++.++..|.||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~-----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY-----EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS-----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc-----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 3456777777777777777665432 2222 4577777777777764 4777777777777777777777777
Q ss_pred HHHHcCC------HHHHHHHHHcCCCCCCCCCCCC-cHHHHHHhhC-----CHHHHHHHHH-cCCCCCCCCCCCCCHHHH
Q 028517 120 YAASKGW------LKIVELLISRGAKINSKDKVGC-TALHRGASTG-----NSALCELLIE-EGAEVDATDKAGQTPLMN 186 (208)
Q Consensus 120 ~a~~~~~------~~~~~~ll~~~~~~~~~~~~~~-t~l~~A~~~~-----~~~~~~~Ll~-~~~~~~~~~~~g~t~l~~ 186 (208)
+|+..++ .+++++|+++|++++.+|..|. ||||+|+..+ ..+++++|++ +|++++.+|..|.||||+
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~ 160 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHH
Confidence 7777665 4667777777777777777777 7777777743 3457777777 777777777777888888
Q ss_pred HHHhCCccccccccc
Q 028517 187 AVICYNKEFSGCSSS 201 (208)
Q Consensus 187 A~~~~~~~~~~~l~~ 201 (208)
|++.++.+++++|..
T Consensus 161 A~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 161 VKRCQKPIALKMMED 175 (186)
T ss_dssp HHTTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 877777777777765
No 82
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.96 E-value=3e-29 Score=166.23 Aligned_cols=124 Identities=34% Similarity=0.474 Sum_probs=89.7
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 028517 79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158 (208)
Q Consensus 79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~ 158 (208)
..+.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 34566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSN 202 (208)
Q Consensus 159 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 202 (208)
+.+++++|+++|++++.+|.+|.||+++|+..++.+++++|++.
T Consensus 92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 77777777777777777777777777777777777777777654
No 83
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.96 E-value=5.3e-29 Score=162.56 Aligned_cols=125 Identities=49% Similarity=0.736 Sum_probs=71.9
Q ss_pred CchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHc
Q 028517 45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK 124 (208)
Q Consensus 45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~ 124 (208)
|.||||.|+..|+.+++++|++.+.+ ++..+..|.|||+.|+..++.+++++|++.|.+++.++..|.||+|+|+..
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Confidence 55566666666666666666554443 334445555556655555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCC
Q 028517 125 GWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAE 172 (208)
Q Consensus 125 ~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~ 172 (208)
++.+++++|+++|++++..+..|.||++.|+..|+.+++++|+++|+|
T Consensus 79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 555555555555555555555555555555555555555555555543
No 84
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.96 E-value=2.6e-28 Score=159.27 Aligned_cols=125 Identities=43% Similarity=0.632 Sum_probs=118.2
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCC
Q 028517 80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGN 159 (208)
Q Consensus 80 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~ 159 (208)
.|.|||+.|+..|+.+++++|+++|.+++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||.|+..++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517 160 SALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT 204 (208)
Q Consensus 160 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 204 (208)
.+++++|+++|++++.++..|.||+++|+..++.+++++|+++++
T Consensus 81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999998875
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.96 E-value=3.3e-30 Score=179.39 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=139.7
Q ss_pred cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCC-CCCchHHHHHHhcCCH----HHHHHHHhcccccccccccCCCCCc
Q 028517 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHP----EVVEILLSVDESANVVNAVDEEGWA 83 (208)
Q Consensus 9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~~~~ll~~~~~~~~~~~~~~~~~~ 83 (208)
++.++|+.|++.|+++.++.++... ....+ ..|.||||+|+..|+. +++++|++.|++ ++..+..|.|
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~~~----~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad---vn~~d~~g~T 77 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFEKG----YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD---IKSRTKEGTT 77 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHHHS----SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC---SSCCCTTCCC
T ss_pred ccccHHHHHHHcCCHHHHHHHHhcC----cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC---CCCCCCCCCc
Confidence 4567899999999999999998654 23334 6799999999999985 589999999887 6778899999
Q ss_pred HHHHHHhcCC------HHHHHHHHhCCCCCCCCCCCCc-hHHHHHHHcC-----CHHHHHHHHH-cCCCCCCCCCCCCcH
Q 028517 84 PIHSAASIGN------VTIVEMLLSKGADVNLKNDGGR-TALHYAASKG-----WLKIVELLIS-RGAKINSKDKVGCTA 150 (208)
Q Consensus 84 ~l~~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~ll~-~~~~~~~~~~~~~t~ 150 (208)
|||+|+..++ .+++++|+++|++++.+|..|. ||+|+|+..+ ..+++++|++ +|++++.+|..|.||
T Consensus 78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp 157 (186)
T 3t8k_A 78 LFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157 (186)
T ss_dssp THHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH
Confidence 9999999887 6889999999999999999999 9999999844 3568999999 999999999999999
Q ss_pred HHHHHhhCCHHHHHHHHHcCCCCCC
Q 028517 151 LHRGASTGNSALCELLIEEGAEVDA 175 (208)
Q Consensus 151 l~~A~~~~~~~~~~~Ll~~~~~~~~ 175 (208)
||+|+..|+.+++++|.++..+.+.
T Consensus 158 L~~A~~~~~~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 158 LEFVKRCQKPIALKMMEDYIKKYNL 182 (186)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999976444333
No 86
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.9e-30 Score=185.53 Aligned_cols=172 Identities=24% Similarity=0.240 Sum_probs=143.5
Q ss_pred HHHHHHhhhh-hccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCC
Q 028517 27 KSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105 (208)
Q Consensus 27 ~~l~~~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~ 105 (208)
+.|++.+... .....+..+.||||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga 78 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND---PSQPNEEGITALHNAICGANYSIVDFLITAGA 78 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 4566655311 1223455677899999999999999999998776 57788899999999999999999999999999
Q ss_pred CCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHH--HhhCCHHHHHHHHHcCCCCCCCCCCCCC
Q 028517 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRG--ASTGNSALCELLIEEGAEVDATDKAGQT 182 (208)
Q Consensus 106 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~g~t 182 (208)
+++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.|||++| +..|+.+++++|+++|++++..+..|.+
T Consensus 79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~ 158 (229)
T 2vge_A 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVY 158 (229)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEE
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchH
Confidence 999999999999999999999999999999999999886 5999999999 9999999999999999999999999999
Q ss_pred HHHHHHHhCCcccccccccccc
Q 028517 183 PLMNAVICYNKEFSGCSSSNKT 204 (208)
Q Consensus 183 ~l~~A~~~~~~~~~~~l~~~~~ 204 (208)
|++.++.... .++|++.+.
T Consensus 159 ~l~~~~~~~~---~~~ll~~ga 177 (229)
T 2vge_A 159 ALWDYSAEFG---DELSFREGE 177 (229)
T ss_dssp ESSCBCCSST---TBCCBCTTC
T ss_pred HHHHHhhccc---cccCccccc
Confidence 9986554443 355565543
No 87
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.96 E-value=5.7e-29 Score=168.64 Aligned_cols=131 Identities=26% Similarity=0.275 Sum_probs=120.8
Q ss_pred cccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHH
Q 028517 75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCT-ALHR 153 (208)
Q Consensus 75 ~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t-~l~~ 153 (208)
...+..+.||||.|+..|+.+++++|+++|++++.++..|.||+|+|+ .|+.+++++|+++|++++..+..|.| |||+
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 345678999999999999999999999999999999999999999985 89999999999999999999999999 9999
Q ss_pred HHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517 154 GASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS 206 (208)
Q Consensus 154 A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 206 (208)
|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++..
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~ 137 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT 137 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999987643
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.96 E-value=7.1e-28 Score=159.59 Aligned_cols=126 Identities=40% Similarity=0.537 Sum_probs=117.1
Q ss_pred CCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 028517 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121 (208)
Q Consensus 42 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a 121 (208)
...+.||||.|+..|+.+++++|++.+.+ ++..+..|.||||.|+..++.+++++|+++|++++.++..|.||+|+|
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A 87 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA 87 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence 45678999999999999999999998766 567788999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcC
Q 028517 122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170 (208)
Q Consensus 122 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~ 170 (208)
+..++.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++|
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999875
No 89
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.96 E-value=9.6e-29 Score=163.97 Aligned_cols=130 Identities=30% Similarity=0.394 Sum_probs=114.0
Q ss_pred ccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 028517 76 AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGA 155 (208)
Q Consensus 76 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~ 155 (208)
..+..|.||||.|+..|+.+++++|++.|.+++.++..|.||+|+|+..++.+++++|+++|++++..+..|.||||+|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 45678899999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 156 STGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 156 ~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
..|+.+++++|+++|++++.+|.+|.||+++|+..+..+++++|..+.+.
T Consensus 85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence 99999999999999999999999999999999999999999988876554
No 90
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=3.8e-31 Score=202.33 Aligned_cols=189 Identities=16% Similarity=0.136 Sum_probs=145.5
Q ss_pred ccCcHHHHHHHHcCChHHHHHHHHHhhhh-hccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHH
Q 028517 8 TIKDKDLFKAAETGDSSTFKSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86 (208)
Q Consensus 8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~ 86 (208)
..++++||.|++.|+.+++++|++.+... .....+..|.||||+|+..|+.+++++|++.+++....+..+.. .||||
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh 168 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR 168 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence 34569999999999999999998766311 11133456788999999999999999999988542111112222 89999
Q ss_pred HHHhcCCHHHHHHHHhCCCCCCC--CCCCCchHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHH
Q 028517 87 SAASIGNVTIVEMLLSKGADVNL--KNDGGRTALHYAA-SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALC 163 (208)
Q Consensus 87 ~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~ 163 (208)
.|+..|+.+++++|+++|++++. .+..|.||+|+|+ ..|+.+++++|+++|. .+.||++.|+..|+.+++
T Consensus 169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv 241 (376)
T 2aja_A 169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVN 241 (376)
T ss_dssp HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHH
T ss_pred HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHH
Confidence 99999999999999999998776 7778999999999 9999999999998763 278899999999999999
Q ss_pred HHHHHcCCCC----------------C---------------------------------------------CCCCCCCC
Q 028517 164 ELLIEEGAEV----------------D---------------------------------------------ATDKAGQT 182 (208)
Q Consensus 164 ~~Ll~~~~~~----------------~---------------------------------------------~~~~~g~t 182 (208)
++|+++|+++ + .....+.+
T Consensus 242 ~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~ 321 (376)
T 2aja_A 242 PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANE 321 (376)
T ss_dssp HHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCH
T ss_pred HHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccH
Confidence 9998765432 1 01124567
Q ss_pred HHHHHHHhCCcccccccccccc
Q 028517 183 PLMNAVICYNKEFSGCSSSNKT 204 (208)
Q Consensus 183 ~l~~A~~~~~~~~~~~l~~~~~ 204 (208)
|+++|+..|+.+++++|++.++
T Consensus 322 ~L~~A~~~g~~e~v~lLl~~~~ 343 (376)
T 2aja_A 322 LLRLALRLGNQGACALLLSIPS 343 (376)
T ss_dssp HHHHHHHHTCTTHHHHHTTSHH
T ss_pred HHHHHHHcCcHHHHHHHHcChH
Confidence 8999999999999999998653
No 91
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=7.3e-31 Score=200.75 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=146.2
Q ss_pred cHHHHHHHH-cCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 028517 11 DKDLFKAAE-TGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA 89 (208)
Q Consensus 11 ~~~l~~a~~-~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~ 89 (208)
...++.|.. .++.+.+++++..+ ..+.||||.|+..|+.+++++|++.+.........+..+.||||.|+
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g---------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKG---------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 136 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHT---------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcC---------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence 445666665 57888888887654 23569999999999999999999887633222334456789999999
Q ss_pred hcCCHHHHHHHHhCCCCC---CCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCcHHHHHH-hhCCHHHH
Q 028517 90 SIGNVTIVEMLLSKGADV---NLKNDGGRTALHYAASKGWLKIVELLISRGAKINS--KDKVGCTALHRGA-STGNSALC 163 (208)
Q Consensus 90 ~~~~~~~~~~Ll~~~~~~---~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~--~~~~~~t~l~~A~-~~~~~~~~ 163 (208)
..|+.+++++|+++|+++ +..+.. .||+|+|+..|+.+++++|+++|++++. .+..|.||||+|+ ..|+.+++
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv 215 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 215 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence 999999999999999752 222233 8999999999999999999999999877 7888999999999 99999999
Q ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 164 ELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 164 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
++|+++|+ .|.||+++|+..|+.+++++|+++++.
T Consensus 216 ~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~ 250 (376)
T 2aja_A 216 NFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNR 250 (376)
T ss_dssp HHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred HHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcc
Confidence 99999764 388999999999999999999987653
No 92
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.95 E-value=2.2e-27 Score=154.50 Aligned_cols=117 Identities=32% Similarity=0.392 Sum_probs=98.0
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhC
Q 028517 79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTG 158 (208)
Q Consensus 79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~ 158 (208)
..+.|||+.|+..|+.+++++|++.|.+++.++..|.||||+|+..++.+++++|+++|++++..|..|.||||+|+..|
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 46678888888888888888888888888888888888888888888888888888888888888888888999888888
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccc
Q 028517 159 NSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEF 195 (208)
Q Consensus 159 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~ 195 (208)
+.+++++|+++|++++.+|.+|.||+++|...+..++
T Consensus 85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 85 HVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 8888888888888888888888899888855444433
No 93
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=9.7e-27 Score=173.49 Aligned_cols=142 Identities=20% Similarity=0.194 Sum_probs=104.7
Q ss_pred CchHHHHHHhcCCHHHHHHHHhcccccccc---cccCCCCCcHHHHHHhc---CCHHHHHHHHhCCCCCCCCCCCCchHH
Q 028517 45 DRTLLHVAASCGHPEVVEILLSVDESANVV---NAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTAL 118 (208)
Q Consensus 45 g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~---~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~l 118 (208)
..++|+.|+..|+.+.++.|+..+.+.... ...+..|.||||.|+.. ++.+++++|++.|++++.+|..|.|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 446688888888888888888766653210 00466778888888876 778888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCC
Q 028517 119 HYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192 (208)
Q Consensus 119 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 192 (208)
|+|+..|+.+++++|+++|++++..|..|.|||++|+..|+.+++++|+++|++ .|.||||+|+..|.
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence 888888888888888888888888888888888888888888888888887765 46788888887765
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.94 E-value=2.4e-27 Score=157.22 Aligned_cols=128 Identities=33% Similarity=0.454 Sum_probs=117.3
Q ss_pred CCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHH
Q 028517 40 LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119 (208)
Q Consensus 40 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~ 119 (208)
.++..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|+..++.+++++|+++|++++.++..|.||+|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 81 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLH 81 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHH
Confidence 5788999999999999999999999998776 5677889999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcC
Q 028517 120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG 170 (208)
Q Consensus 120 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~ 170 (208)
+|+..++.+++++|+++|++++..+..|.||+++|+..+..+++++|.+.+
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999988877654
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.94 E-value=4.2e-27 Score=163.50 Aligned_cols=140 Identities=28% Similarity=0.328 Sum_probs=123.2
Q ss_pred CCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCC-CCCchHHHH
Q 028517 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHY 120 (208)
Q Consensus 42 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~ 120 (208)
+..|.||||.|+..|+.+++++|++ +.+ ++..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 3467899999999999999999998 554 67778899999999999999999999999999998888 789999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccc
Q 028517 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSS 200 (208)
Q Consensus 121 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~ 200 (208)
|+..|+.+++++|+++|++++..|..|.|||++|+..++. ..+.+++++|+..|..+++++|.
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~ 179 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLE 179 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999999999999999874322 34678999999999999999987
Q ss_pred cc
Q 028517 201 SN 202 (208)
Q Consensus 201 ~~ 202 (208)
++
T Consensus 180 ~~ 181 (183)
T 3deo_A 180 GQ 181 (183)
T ss_dssp TC
T ss_pred Hh
Confidence 65
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.94 E-value=6.5e-27 Score=169.65 Aligned_cols=137 Identities=28% Similarity=0.334 Sum_probs=84.9
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCC-CCCchHHHHHH
Q 028517 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAA 122 (208)
Q Consensus 44 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~a~ 122 (208)
.|.||||.|+..|+.+++++|++ +.+ ++..+..|.||||.|+..|+.+++++|+++|++++.++ ..|.||||+|+
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 45666666666666666666665 333 44555566666666666666666666666666666655 55666666666
Q ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccc
Q 028517 123 SKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSS 201 (208)
Q Consensus 123 ~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~ 201 (208)
..|+.+++++|+++|++++..+..|.||||+|+..+. ...+.+|+++|+..|+.+++++|.+
T Consensus 120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHH
Confidence 6666666666666666666666666666666654211 1345666666666666666666654
No 97
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.94 E-value=4.6e-27 Score=168.10 Aligned_cols=126 Identities=28% Similarity=0.361 Sum_probs=86.8
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhh
Q 028517 79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKVGCTALHRGAST 157 (208)
Q Consensus 79 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~t~l~~A~~~ 157 (208)
..|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ |++++..+..|.||||+|+..
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~ 150 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence 3456777777777777777777777777777777777777777777777777777776 777777777777777777777
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccc
Q 028517 158 GNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKT 204 (208)
Q Consensus 158 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~ 204 (208)
|+.+++++|+++|++++.+|.+|.||+++|+..+..++++.|...++
T Consensus 151 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 77777777777777777777777777777777777777777766554
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.94 E-value=8e-27 Score=166.84 Aligned_cols=137 Identities=27% Similarity=0.316 Sum_probs=114.3
Q ss_pred CCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhC-CCCCCCCCCCCchHHHH
Q 028517 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHY 120 (208)
Q Consensus 42 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~ 120 (208)
+..|.||||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++. |++++.++..|.||||+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVG---VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA 146 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence 55689999999999999999999998766 667788999999999999999999999998 99999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCC
Q 028517 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQ 181 (208)
Q Consensus 121 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~ 181 (208)
|+..|+.+++++|+++|++++..+..|.|||++|+..+..++++.|++.++.....+.+++
T Consensus 147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence 9999999999999999999999999999999999999999999999999998877765543
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.93 E-value=1.1e-25 Score=146.46 Aligned_cols=117 Identities=32% Similarity=0.357 Sum_probs=101.2
Q ss_pred CCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHH
Q 028517 42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121 (208)
Q Consensus 42 ~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a 121 (208)
+..|.||||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||+|+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED---VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC---TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC---cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence 45678999999999999999999987765 567788899999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHH
Q 028517 122 ASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSA 161 (208)
Q Consensus 122 ~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~ 161 (208)
+..++.+++++|+++|++++..+..|.||+++|...+..+
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 120 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHH
Confidence 9999999999999999999999999999999985443333
No 100
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.93 E-value=1.1e-25 Score=156.26 Aligned_cols=124 Identities=31% Similarity=0.362 Sum_probs=117.4
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHh
Q 028517 78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KVGCTALHRGAS 156 (208)
Q Consensus 78 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~t~l~~A~~ 156 (208)
+..|.||||.|+..|+.++++.|++ +.+++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~ 119 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence 3467899999999999999999999 99999999999999999999999999999999999999888 889999999999
Q ss_pred hCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccc
Q 028517 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSN 202 (208)
Q Consensus 157 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~ 202 (208)
.|+.+++++|+++|++++.+|.+|.||+|+|+..++.+..+.+++.
T Consensus 120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~ 165 (183)
T 3deo_A 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 165 (183)
T ss_dssp TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHH
T ss_pred cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHH
Confidence 9999999999999999999999999999999999998888777654
No 101
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.93 E-value=2.4e-25 Score=161.39 Aligned_cols=142 Identities=23% Similarity=0.317 Sum_probs=126.7
Q ss_pred ccCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccC-CCCCcHHH
Q 028517 8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIH 86 (208)
Q Consensus 8 ~~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~-~~~~~~l~ 86 (208)
..+.++||.|++.|+.++++.|++ + .+++..+..|.||||+|+..|+.+++++|++.+.+ ++..+ ..|.||||
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~g~t~L~ 116 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALH 116 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCSSSCCCHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCcCCCCCCCCHHH
Confidence 467899999999999999999998 3 57888899999999999999999999999998877 45555 78999999
Q ss_pred HHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHH
Q 028517 87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELL 166 (208)
Q Consensus 87 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~L 166 (208)
.|+..|+.+++++|+++|++++.++..|.||+|+|+..+ ....+.||+++|+..|+.+++++|
T Consensus 117 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-----------------~~~~~~~~l~~a~~~g~~~iv~~L 179 (244)
T 3ui2_A 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL-----------------KTTPKGNPMQFGRRIGLEKVINVL 179 (244)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH-----------------TTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH-----------------hccCCCCHHHHHHHcChHHHHHHH
Confidence 999999999999999999999999999999999998521 224578999999999999999999
Q ss_pred HHcCCC
Q 028517 167 IEEGAE 172 (208)
Q Consensus 167 l~~~~~ 172 (208)
++++.+
T Consensus 180 ~~~~~~ 185 (244)
T 3ui2_A 180 EGQVFE 185 (244)
T ss_dssp HHHHEE
T ss_pred HHhccc
Confidence 986443
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.93 E-value=3.1e-25 Score=165.40 Aligned_cols=140 Identities=22% Similarity=0.206 Sum_probs=120.3
Q ss_pred CcHHHHHHHHcCChHHHHHHHHHhhhhhccC------CCCCCchHHHHHHhc---CCHHHHHHHHhcccccccccccCCC
Q 028517 10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSL------RNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAVDEE 80 (208)
Q Consensus 10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~~~~ll~~~~~~~~~~~~~~~ 80 (208)
..++|+.|++.|+.+.++.|++.+ .+++. .+..|.||||+|+.. |+.+++++|++.+.+ ++..+..
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---vn~~d~~ 225 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAAD 225 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTT--CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC---TTCCCTT
T ss_pred hHHHHhhhhhccCHHHHHHHHhcC--CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC---CCCCCCC
Confidence 457799999999999999999766 35554 588999999999997 899999999998876 6777889
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCH
Q 028517 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160 (208)
Q Consensus 81 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~ 160 (208)
|.||||.|+..|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|+++|++ .|.||||+|+..|+.
T Consensus 226 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999865 478999999988763
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.92 E-value=1.9e-24 Score=159.47 Aligned_cols=124 Identities=22% Similarity=0.280 Sum_probs=115.9
Q ss_pred CcHHHHHHhcCCHHHHHHHHhCCCCCC------CCCCCCchHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 028517 82 WAPIHSAASIGNVTIVEMLLSKGADVN------LKNDGGRTALHYAASK---GWLKIVELLISRGAKINSKDKVGCTALH 152 (208)
Q Consensus 82 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~------~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~t~l~ 152 (208)
.++|+.|+..++.+.++.+++.|.+++ ..+..|.||||+|+.. ++.+++++|+++|++++..|..|.||||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh 210 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence 458999999999999999999998844 4477899999999999 8999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccccc
Q 028517 153 RGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTW 205 (208)
Q Consensus 153 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~ 205 (208)
+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++.++-
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999987653
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.92 E-value=4.2e-24 Score=169.56 Aligned_cols=133 Identities=21% Similarity=0.200 Sum_probs=113.6
Q ss_pred CCchHHHHHHhcCCHHHHHHHHhcccccccc---cccCCCCCcHHHHHHh---cCCHHHHHHHHhCCCCCCCCCCCCchH
Q 028517 44 DDRTLLHVAASCGHPEVVEILLSVDESANVV---NAVDEEGWAPIHSAAS---IGNVTIVEMLLSKGADVNLKNDGGRTA 117 (208)
Q Consensus 44 ~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~---~~~~~~~~~~l~~a~~---~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 117 (208)
...+.||.|+..|+.+.++.|++.|.+.+.. ...+..|.||||+|+. .|+.+++++|+++|++++.+|..|.||
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence 3457799999999999999999988764311 1126789999999966 899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCC
Q 028517 118 LHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDAT 176 (208)
Q Consensus 118 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~ 176 (208)
||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998764
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.91 E-value=1.1e-23 Score=130.33 Aligned_cols=92 Identities=48% Similarity=0.754 Sum_probs=62.5
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCH
Q 028517 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNS 160 (208)
Q Consensus 81 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~ 160 (208)
|.||||.|+..|+.+++++|++.|++++.++..|.||+|+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~ 81 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence 56666666666666666666666666666666666777777666666666766666666666666666777777766667
Q ss_pred HHHHHHHHcCCC
Q 028517 161 ALCELLIEEGAE 172 (208)
Q Consensus 161 ~~~~~Ll~~~~~ 172 (208)
+++++|+++|++
T Consensus 82 ~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 82 EVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 777776666653
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.91 E-value=8e-24 Score=161.33 Aligned_cols=145 Identities=26% Similarity=0.288 Sum_probs=110.6
Q ss_pred CCCchHHHHHHhc-CCHHHHHHHHhcccccccccccC--CCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHH
Q 028517 43 DDDRTLLHVAASC-GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119 (208)
Q Consensus 43 ~~g~t~L~~A~~~-g~~~~~~~ll~~~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~ 119 (208)
..+.|+||.|+.. |+.+++++|++.+.+ ++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad---vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGAD---VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCC---TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCC---CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 3456799999998 999999999988876 44445 78899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcC---CCCCCCCCCCCCHHHHHHHh
Q 028517 120 YAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEG---AEVDATDKAGQTPLMNAVIC 190 (208)
Q Consensus 120 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~---~~~~~~~~~g~t~l~~A~~~ 190 (208)
+|+..|+.+++++|+++|++++..|..|.|||++|+..++.+++++|+..+ .+....+..+.|+++++...
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998764 33345556677777776554
No 107
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.91 E-value=4.8e-24 Score=162.57 Aligned_cols=124 Identities=28% Similarity=0.368 Sum_probs=118.9
Q ss_pred CCCcHHHHHHhc-CCHHHHHHHHhCCCCCCCCC--CCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh
Q 028517 80 EGWAPIHSAASI-GNVTIVEMLLSKGADVNLKN--DGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156 (208)
Q Consensus 80 ~~~~~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~ 156 (208)
.+.|+||.|+.. ++.++++.|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~ 277 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 445799999999 99999999999999999988 789999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCccccccccccc
Q 028517 157 TGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNK 203 (208)
Q Consensus 157 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~ 203 (208)
.|+.+++++|+++|++++..|.+|.||||+|+..++.+++++|++.+
T Consensus 278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999998754
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.91 E-value=9.2e-24 Score=167.60 Aligned_cols=126 Identities=23% Similarity=0.242 Sum_probs=118.7
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhCCCCCCCC------CCCCchHHHHHHH---cCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 028517 81 GWAPIHSAASIGNVTIVEMLLSKGADVNLK------NDGGRTALHYAAS---KGWLKIVELLISRGAKINSKDKVGCTAL 151 (208)
Q Consensus 81 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~------~~~~~~~l~~a~~---~~~~~~~~~ll~~~~~~~~~~~~~~t~l 151 (208)
..+.|+.|+..|+.+.++.|++.|++++.+ +..|.||||+|+. .|+.+++++|+++|++++..|..|.|||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 346799999999999999999999999877 8899999999976 8999999999999999999999999999
Q ss_pred HHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCCcccccccccccccc
Q 028517 152 HRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYNKEFSGCSSSNKTWS 206 (208)
Q Consensus 152 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~l~~~~~~~ 206 (208)
|+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+.+++++|++.++..
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 266 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 266 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999987654
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.91 E-value=4.8e-24 Score=131.87 Aligned_cols=92 Identities=42% Similarity=0.583 Sum_probs=88.2
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCC
Q 028517 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVICYN 192 (208)
Q Consensus 113 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 192 (208)
+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|.+|.||+|+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccc
Q 028517 193 KEFSGCSSSNKT 204 (208)
Q Consensus 193 ~~~~~~l~~~~~ 204 (208)
.+++++|+++++
T Consensus 81 ~~~~~~Ll~~ga 92 (93)
T 1n0q_A 81 LEVVKLLLEAGA 92 (93)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999999875
No 110
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.90 E-value=6.3e-23 Score=151.31 Aligned_cols=127 Identities=19% Similarity=0.166 Sum_probs=117.2
Q ss_pred hHHHHHHhcCCHHHHHHHHhccccccc---ccccCCCCCcHHHHHHhc---CCHHHHHHHHhCCCCCCCCCCCCchHHHH
Q 028517 47 TLLHVAASCGHPEVVEILLSVDESANV---VNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALHY 120 (208)
Q Consensus 47 t~L~~A~~~g~~~~~~~ll~~~~~~~~---~~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~ 120 (208)
++|+.|+..|+.+.++.++..+.+... ++..+..|.||||.|+.. ++.+++++|+++|++++.+|..|.||||+
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~ 211 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY 211 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence 589999999999999999988776421 344577899999999999 89999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCC
Q 028517 121 AASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEV 173 (208)
Q Consensus 121 a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~ 173 (208)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 212 A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 212 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999998754
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.90 E-value=4.7e-24 Score=137.05 Aligned_cols=108 Identities=38% Similarity=0.574 Sum_probs=81.1
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh
Q 028517 77 VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGAS 156 (208)
Q Consensus 77 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~ 156 (208)
++..|.||||.|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+.
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~ 84 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 45677777777777777777777777777777777777777777777777777777777777777777777778888877
Q ss_pred hCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q 028517 157 TGNSALCELLIEEGAEVDATDKAGQTPL 184 (208)
Q Consensus 157 ~~~~~~~~~Ll~~~~~~~~~~~~g~t~l 184 (208)
.++.+++++|+++|++++..+..|.+|-
T Consensus 85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 85 NGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 7777888888777777777777776653
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.89 E-value=6.1e-23 Score=131.82 Aligned_cols=109 Identities=40% Similarity=0.546 Sum_probs=99.5
Q ss_pred CCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHH
Q 028517 40 LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119 (208)
Q Consensus 40 ~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~ 119 (208)
++|..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||.|+..++.+++++|+++|++++.++..|.||++
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH 80 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC---SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 5688999999999999999999999988766 5677889999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 028517 120 YAASKGWLKIVELLISRGAKINSKDKVGCTAL 151 (208)
Q Consensus 120 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l 151 (208)
+|+..++.+++++|+++|++++..+..+.+|-
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999999998888874
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.84 E-value=7.3e-21 Score=121.13 Aligned_cols=89 Identities=33% Similarity=0.410 Sum_probs=49.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Q 028517 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLIEEGAEVDATDKAGQTPLMNAVIC 190 (208)
Q Consensus 111 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~A~~~ 190 (208)
+..|.|+||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~ 100 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN 100 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCccccccc
Q 028517 191 YNKEFSGCS 199 (208)
Q Consensus 191 ~~~~~~~~l 199 (208)
|+.+++++|
T Consensus 101 ~~~~~~~~L 109 (110)
T 2zgd_A 101 GNEDLAEIL 109 (110)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 555555544
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.83 E-value=5.3e-20 Score=117.13 Aligned_cols=93 Identities=35% Similarity=0.526 Sum_probs=79.1
Q ss_pred ccccCCCCCcHHHHHHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 028517 74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHR 153 (208)
Q Consensus 74 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~ 153 (208)
....+..|.|+||.|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++..+..|.|||++
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence 44556778889999999999999999999988888888889999999999999999999999999988888889999999
Q ss_pred HHhhCCHHHHHHH
Q 028517 154 GASTGNSALCELL 166 (208)
Q Consensus 154 A~~~~~~~~~~~L 166 (208)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 9999999988876
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=77.76 E-value=1.8 Score=20.72 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=15.0
Q ss_pred HHHHHHHHcCChHHHHHHH
Q 028517 12 KDLFKAAETGDSSTFKSLS 30 (208)
Q Consensus 12 ~~l~~a~~~g~~~~~~~l~ 30 (208)
-.+..|+..|+++.++.|-
T Consensus 15 QqiyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 15 KQMDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHH
Confidence 3577888889998888774
No 116
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=63.50 E-value=16 Score=28.80 Aligned_cols=154 Identities=12% Similarity=0.020 Sum_probs=79.4
Q ss_pred cHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhc-CC-------------HHHHHHHHhcccccccccc
Q 028517 11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC-GH-------------PEVVEILLSVDESANVVNA 76 (208)
Q Consensus 11 ~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~-g~-------------~~~~~~ll~~~~~~~~~~~ 76 (208)
+..|..+++.|+++....+++.=..... ..|..-++.|..+|.. +. .++++.+...|-.++..
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv-~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~-- 106 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGV-QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA-- 106 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH--
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH--
Confidence 3446677789999888887764321111 1233334555555542 22 23444444443322211
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHh----CCCCCCCCCCCCchHHHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCC
Q 028517 77 VDEEGWAPIHSAASIGNVTIVEMLLS----KGADVNLKNDGGRTALHYAASKGWLKIV----ELLISRGAKINSKDKVGC 148 (208)
Q Consensus 77 ~~~~~~~~l~~a~~~~~~~~~~~Ll~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~----~~ll~~~~~~~~~~~~~~ 148 (208)
...+.+...++.|..+.+..+++ .|..++... -.+.+...+..|..+.+ +.+.+.|..++... -.
T Consensus 107 ---tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t--y~ 179 (501)
T 4g26_A 107 ---TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS--YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE--LA 179 (501)
T ss_dssp ---HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH--HH
T ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce--ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH--HH
Confidence 12345566778888765554444 566554321 23345556677876654 44445676654332 12
Q ss_pred cHHHHHHhhCCHHHHHHHH----HcCCCCC
Q 028517 149 TALHRGASTGNSALCELLI----EEGAEVD 174 (208)
Q Consensus 149 t~l~~A~~~~~~~~~~~Ll----~~~~~~~ 174 (208)
+.+...++.|..+-+..++ +.|..++
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 3445557788876443333 3455543
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=61.31 E-value=34 Score=22.91 Aligned_cols=133 Identities=14% Similarity=0.068 Sum_probs=86.9
Q ss_pred cCcHHHHHHHHcCChHHHHHHHHHhhhhhccCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517 9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (208)
Q Consensus 9 ~~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (208)
+.++.|-.|+..|+++....+.+.-. .. ..-...=..|...|+.++++..+..-.+. ...+...
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~~l~-~~-----~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----------~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAKKLN-DS-----ITWERLIQEALAQGNASLAEMIYQTQHSF----------DKLSFLY 70 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHC-CH-----HHHHHHHHHHHHTTCHHHHHHHHHHTTCH----------HHHHHHH
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHhC-CH-----HHHHHHHHHHHHcCChHHHHHHHHHhCCH----------HHHHHHH
Confidence 45788999999999999988865430 00 01123345677899999999988643321 1245566
Q ss_pred HhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHH-HHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 028517 89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK-IVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167 (208)
Q Consensus 89 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~-~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll 167 (208)
...|+.+-++.+.+... ...+.+..++.+...|..+ +++.|.+.|-- .-+...|..+|..++.+-++
T Consensus 71 ~~tg~~e~L~kla~iA~----~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~--------~eA~~~A~t~g~~~~a~~~~ 138 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQ----TREDFGSMLLNTFYNNSTKERSSIFAEGGSL--------PLAYAVAKANGDEAAASAFL 138 (177)
T ss_dssp HHHTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH----HCccHHHHHHHHHHcCCHHHHHHHHHHCCCh--------HHHHHHHHHcCcHHHHHHHH
Confidence 67788877777655311 1223445677777888775 77887765421 11456777889999998887
Q ss_pred Hc
Q 028517 168 EE 169 (208)
Q Consensus 168 ~~ 169 (208)
+.
T Consensus 139 ~~ 140 (177)
T 3mkq_B 139 EQ 140 (177)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 118
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=36.64 E-value=23 Score=22.13 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=26.1
Q ss_pred CcccccccCcHHHHHHHHcCChHHHHHHHHHh
Q 028517 2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQ 33 (208)
Q Consensus 2 ~~~~~~~~~~~~l~~a~~~g~~~~~~~l~~~~ 33 (208)
.+...|.....++..|+.+++.+++..|++-+
T Consensus 27 ~L~KkDkLykDAietAa~S~d~elaEeLL~yF 58 (125)
T 3qil_A 27 ELAKKDSLYKDAMQYASESKDTELAEELLQWF 58 (125)
T ss_dssp CCCSCCCCSSHHHHTTTSSCCSHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45567777888899999999999999888766
No 119
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=32.51 E-value=1.1e+02 Score=22.88 Aligned_cols=125 Identities=14% Similarity=0.031 Sum_probs=52.2
Q ss_pred CcHHHHHHHHcCChHHHHHHHHHhhhhhcc-CCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 028517 10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLS-LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88 (208)
Q Consensus 10 ~~~~l~~a~~~g~~~~~~~l~~~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a 88 (208)
|...+-.++..+..+..+.+++...+.... ..+..|...+..+...+..+.-+.++..-......-..|..|+..+..+
T Consensus 150 Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~ 229 (369)
T 3k49_A 150 GNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYV 229 (369)
T ss_dssp HHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 334444444444444444444432211111 1244555556666666665544444432111111122344555555555
Q ss_pred HhcCCH----------HHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHH
Q 028517 89 ASIGNV----------TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135 (208)
Q Consensus 89 ~~~~~~----------~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~ 135 (208)
...+.. .+++.+..+-..+ ..++.|...+..+...+..+.-+.+++
T Consensus 230 l~~~~~~~~~~~~~~~~i~~~l~~~~~~L-s~~k~gS~Vvek~l~~~~~~~r~~ii~ 285 (369)
T 3k49_A 230 LQQDQFTNKEMVDIKQEIIETVANNVVEY-SKHKFASNVVEKSILYGSKNQKDLIIS 285 (369)
T ss_dssp HTCCTTSCHHHHHHHHHHHHHHHTTHHHH-HTSTTHHHHHHHHHHHSCHHHHHHHHT
T ss_pred HhcCCchhhhhHhHHHHHHHHHHHHHHHH-HhhhHhhHHHHHHHHhCCHHHHHHHHH
Confidence 554432 1222222211111 124455555555555555555454544
No 120
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=32.35 E-value=50 Score=24.56 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=10.4
Q ss_pred CCCCCcHHHHHHhhCCHHHHHHHH
Q 028517 144 DKVGCTALHRGASTGNSALCELLI 167 (208)
Q Consensus 144 ~~~~~t~l~~A~~~~~~~~~~~Ll 167 (208)
|..|+-.+......+.++..+.++
T Consensus 214 d~~Gn~ViQ~~l~~~~~~~~~~i~ 237 (351)
T 3gvo_A 214 DQYGNYVIQHVLEHGRPEDKSKIV 237 (351)
T ss_dssp STTHHHHHHHHHHHSCHHHHHHHH
T ss_pred CchHHHHHHHHHHhCchhhHHHHH
Confidence 344444444444444444433333
No 121
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=27.46 E-value=1.8e+02 Score=22.51 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=13.0
Q ss_pred CchHHHHHHHcCCHHHHHHHHH
Q 028517 114 GRTALHYAASKGWLKIVELLIS 135 (208)
Q Consensus 114 ~~~~l~~a~~~~~~~~~~~ll~ 135 (208)
|.|.+|.|++..+.+++..|+.
T Consensus 69 g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 69 GYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp TCCHHHHHHHTTCHHHHHHHHH
T ss_pred CchhhhhhhhhhhhhHHHHhhh
Confidence 5566666666666666555553
No 122
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=25.98 E-value=1.9e+02 Score=22.46 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=43.7
Q ss_pred HHhcCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhhCCHHHHHHHH
Q 028517 88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKVGCTALHRGASTGNSALCELLI 167 (208)
Q Consensus 88 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~t~l~~A~~~~~~~~~~~Ll 167 (208)
.+..|+...++.-+..|.++..+ .|....+. -++.+ ..| -|.|.+|+|++....+++..|+
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~----lt~~e~~l------------ln~~~--af~-~g~tlvhlair~~r~~~l~~ll 89 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQ----LTADEVRL------------LNRPS--AFD-VGYTLVHLAIRFQRQDMLAILL 89 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCC----CCHHHHHH------------HCCTT--TCC-TTCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcc----cCHHHHHH------------hCCCc--ccc-cCchhhhhhhhhhhhhHHHHhh
Confidence 35678999998888888877642 34444332 22222 222 3889999999999999999888
Q ss_pred Hc
Q 028517 168 EE 169 (208)
Q Consensus 168 ~~ 169 (208)
..
T Consensus 90 ~~ 91 (454)
T 3zrh_A 90 TE 91 (454)
T ss_dssp HH
T ss_pred hc
Confidence 63
No 123
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=23.72 E-value=14 Score=27.65 Aligned_cols=181 Identities=12% Similarity=0.065 Sum_probs=86.0
Q ss_pred HHHHHHcCChHHHHHHHHHhhhhhc-cCCCCCCchHHHHHHhcCCHHHHHHHHhcccccccccccCCCCCcHHHHHHhcC
Q 028517 14 LFKAAETGDSSTFKSLSKQQLLKSL-SLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG 92 (208)
Q Consensus 14 l~~a~~~g~~~~~~~l~~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~~~~~~l~~a~~~~ 92 (208)
+-..+..++.+..+.+++.-.+... -..|..|...+.-...+++.+....+++.-......-..+..|...+..+....
T Consensus 41 lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~ 120 (351)
T 3gvo_A 41 IQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESI 120 (351)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHS
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhC
Confidence 3344555666666666554322211 135778888888888888877766665422211112224456666677776666
Q ss_pred CHHHHHHHHhCCCCCC----CCCCCCchHHHHHHHcCCHHHHHHHHHcCC-CC--CCCCCCCCcHHHHHHhhCCHHHHHH
Q 028517 93 NVTIVEMLLSKGADVN----LKNDGGRTALHYAASKGWLKIVELLISRGA-KI--NSKDKVGCTALHRGASTGNSALCEL 165 (208)
Q Consensus 93 ~~~~~~~Ll~~~~~~~----~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~--~~~~~~~~t~l~~A~~~~~~~~~~~ 165 (208)
..+-...+++.- ..+ ..|..|+..+..+......+..+.+++.-. .+ -..+..|...+..+......+....
T Consensus 121 ~~~~~~~i~~el-~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ 199 (351)
T 3gvo_A 121 SSDQQSEMVKEL-DGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLP 199 (351)
T ss_dssp CHHHHHHHHGGG-TTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHh-hhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHH
Confidence 655545555421 111 124445444444444443333333332210 00 0123344444444444444332222
Q ss_pred HHHc---CCCCCCCCCCCCCHHHHHHHhCCccc
Q 028517 166 LIEE---GAEVDATDKAGQTPLMNAVICYNKEF 195 (208)
Q Consensus 166 Ll~~---~~~~~~~~~~g~t~l~~A~~~~~~~~ 195 (208)
+++. ....-..|.+|.-.+..+...+.++.
T Consensus 200 ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~ 232 (351)
T 3gvo_A 200 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPED 232 (351)
T ss_dssp HHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHH
T ss_pred HHHHHhhhHHhcCCCchHHHHHHHHHHhCchhh
Confidence 2221 11112446667777777777666544
Done!