BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028521
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PI1|A Chain A, Crystal Structure Of A Human Mob1 Protein; Toward
Understanding Mob-Regulated Cell Cycle Pathways
Length = 185
Score = 269 bits (688), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 120/180 (66%), Positives = 144/180 (80%), Gaps = 7/180 (3%)
Query: 32 IDATLGSGNLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPTMTAGP 91
++ATLGSGNLR+AV LP GEDLNEW+AVNTVDFFNQ+N+LYGT+TEFCT +CP M+AGP
Sbjct: 1 MEATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGP 60
Query: 92 KYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTI 151
+YEY WADG IKKPI+ SAPKY++YLM W++ QLDDE++FP K+G PFP NF V KTI
Sbjct: 61 RYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTI 120
Query: 152 FKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTC-------VKLGPLQELIDSI 204
KRLFRVYAHIYH HF ++ L+EEAHLNT FKHFI F +L PLQELI+ +
Sbjct: 121 LKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKL 180
>pdb|1R3B|A Chain A, Solution Structure Of Xenopus Laevis Mob1
Length = 202
Score = 265 bits (677), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 119/178 (66%), Positives = 140/178 (78%), Gaps = 7/178 (3%)
Query: 34 ATLGSGNLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPTMTAGPKY 93
ATLGSGNLR+AV LP GEDLNEW+AVNTVDFFNQ+N+LYGT+TEFCT C M+AGP+Y
Sbjct: 20 ATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTESTCSVMSAGPRY 79
Query: 94 EYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFK 153
EY WADG IKKPI+ SAPKY++YLM W++ QLDDE++FP K+G PFP NF V KTI K
Sbjct: 80 EYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILK 139
Query: 154 RLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTC-------VKLGPLQELIDSI 204
RLFRVYAHIYH HF ++ L+EEAHLNT FKHFI F +L PLQELI+ +
Sbjct: 140 RLFRVYAHIYHQHFDAVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKL 197
>pdb|2HJN|A Chain A, Structural And Functional Analysis Of Saccharomyces
Cerevisiae Mob1
Length = 236
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 130/205 (63%), Gaps = 10/205 (4%)
Query: 9 NQRTFRPKKSAPSGSKGAQLRKHIDATLGS-GNLREAVRLPPGEDLNEWLAVNTVDFFNQ 67
+Q+ F ++ + + +++ ++ TLGS G L +AV+LP GED NEWLAV+ VDF+NQ
Sbjct: 30 HQKPFLQPQAGTTVTTHQDIKQIVEXTLGSEGVLNQAVKLPRGEDENEWLAVHCVDFYNQ 89
Query: 68 VNLLYGTLTEFCTAENCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLD 127
+N LYG++TEFC+ + CP A +YEY WA + + P+ VSAPKYVE L W + Q D
Sbjct: 90 INXLYGSITEFCSPQTCPRXIATNEYEYLWAFQ-KGQPPVSVSAPKYVECLXRWCQDQFD 148
Query: 128 DESIFPQKLGAPFPSNF-KEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHF 186
DES+FP K+ FP F + V++ I +RLFRVYAHIY HF +I+ L + LNT F+HF
Sbjct: 149 DESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHF 208
Query: 187 ILFT-------CVKLGPLQELIDSI 204
LF GPL EL+ +
Sbjct: 209 CLFAQEFELLRPADFGPLLELVXEL 233
>pdb|1SQJ|A Chain A, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
pdb|1SQJ|B Chain B, Crystal Structure Analysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
Length = 789
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 56 WLAVNTVDFFNQVNLLYGTLTEFCTAENCPTMTA--GPKYEYRWADGVQIKKPIEVSAPK 113
W++ +D FN +L+YGT + + P + Y DG++ + + +PK
Sbjct: 396 WMSAVLIDPFNPEHLMYGTGATIWATDTLSRVEKDWAPSW-YLQIDGIEENAILSLRSPK 454
Query: 114 YVEYLMDW---IESQLDDESIFPQKL-GAPFPSNFKEV 147
L+ I D+ PQK+ GAP SN +
Sbjct: 455 SGAALLSGIGDISGMKHDDLTKPQKMFGAPQFSNLDSI 492
>pdb|2EBS|A Chain A, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
pdb|2EBS|B Chain B, Crystal Structure Anaalysis Of Oligoxyloglucan
Reducing-End- Specific Cellobiohydrolase (Oxg-Rcbh)
D465n Mutant Complexed With A Xyloglucan Heptasaccharide
Length = 789
Score = 29.3 bits (64), Expect = 1.5, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 56 WLAVNTVDFFNQVNLLYGTLTEFCTAENCPTMTA--GPKYEYRWADGVQIKKPIEVSAPK 113
W++ +D FN +L+YGT + + P + Y DG++ + + +PK
Sbjct: 396 WMSAVLIDPFNPEHLMYGTGATIWATDTLSRVEKDWAPSW-YLQIDGIEENAILSLRSPK 454
Query: 114 YVEYLMDW---IESQLDDESIFPQKL-GAPFPSNFKEV 147
L+ I D+ PQK+ GAP SN +
Sbjct: 455 SGAALLSGIGNISGMKHDDLTKPQKMFGAPQFSNLDSI 492
>pdb|2VEA|A Chain A, The Complete Sensory Module Of The Cyanobacterial
Phytochrome Cph1 In The Pr-State
Length = 520
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 108 EVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPS--NFKEVVKTIF 152
E K V+YL+ W+E++ + F L +P NFK V +
Sbjct: 381 ETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLL 427
>pdb|3ZQ5|A Chain A, Structure Of The Y263f Mutant Of The Cyanobacterial
Phytochrome Cph1
Length = 520
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 108 EVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPS--NFKEVVKTIF 152
E K V+YL+ W+E++ + F L +P NFK V +
Sbjct: 381 ETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLL 427
>pdb|3LMI|A Chain A, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|B Chain B, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|C Chain C, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|D Chain D, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
Length = 307
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 97 WADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLF 156
W + KKP PK +E+LM W+ +D P G P + + ++ FK+
Sbjct: 139 WGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPILCSIEPLLVGEFKKNN 190
Query: 157 RVYAHI 162
Y +
Sbjct: 191 SNYGAV 196
>pdb|3LMH|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
pdb|3LMH|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
Length = 307
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 97 WADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLF 156
W + KKP PK +E+LM W+ +D P G P + + ++ FK+
Sbjct: 139 WGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPILCSIEPLLVGEFKKNN 190
Query: 157 RVYAHI 162
Y +
Sbjct: 191 SNYGAV 196
>pdb|3LKM|A Chain A, 1.6 Angstrom Crystal Structure Of The Alpha-Kinase Domain
Of Myosin Heavy Chain Kinase A Complex With Amp
pdb|3LLA|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
pdb|3LLA|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
Length = 307
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 97 WADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLF 156
W + KKP PK +E+LM W+ +D P G P + + ++ FK+
Sbjct: 139 WGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPILCSIEPLLVGEFKKNN 190
Query: 157 RVYAHI 162
Y +
Sbjct: 191 SNYGAV 196
>pdb|3PDT|A Chain A, Crystal Structure Of The C-Terminal Truncated Alpha-Kinase
Domain Of Myosin Heavy Chain Kinase
Length = 275
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 97 WADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLF 156
W + KKP PK +E+LM W+ +D P G P + + ++ FK+
Sbjct: 139 WGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPILCSIEPLLVGEFKKNN 190
Query: 157 RVYAHI 162
Y +
Sbjct: 191 SNYGAV 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,435,978
Number of Sequences: 62578
Number of extensions: 265991
Number of successful extensions: 521
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 12
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)