Query 028521
Match_columns 208
No_of_seqs 109 out of 413
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 12:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0440 Cell cycle-associated 100.0 1.4E-80 3.1E-85 529.2 19.7 198 9-208 37-242 (243)
2 KOG1903 Cell cycle-associated 100.0 3.4E-78 7.3E-83 495.1 17.0 200 7-206 10-217 (217)
3 PF03637 Mob1_phocein: Mob1/ph 100.0 1.6E-75 3.5E-80 486.7 18.1 168 29-198 1-175 (175)
4 KOG1852 Cell cycle-associated 100.0 6.8E-37 1.5E-41 251.1 6.6 183 17-206 28-212 (223)
5 cd00397 DNA_BRE_C DNA breaking 32.7 1.5E+02 0.0033 22.0 5.8 32 126-157 84-115 (164)
6 PHA03074 late transcription fa 30.8 66 0.0014 28.1 3.6 83 108-192 58-144 (225)
7 PF12431 CitT: Transcriptional 27.6 50 0.0011 19.8 1.7 9 45-53 21-29 (30)
8 KOG3261 Uncharacterized conser 27.2 49 0.0011 28.1 2.2 18 151-168 121-139 (202)
9 PF12186 AcylCoA_dehyd_C: Acyl 24.4 2E+02 0.0044 22.6 5.1 61 146-206 49-109 (114)
10 PF15192 TMEM213: TMEM213 fami 24.2 52 0.0011 24.2 1.6 20 42-61 33-52 (82)
11 COG3682 Predicted transcriptio 23.6 1.3E+02 0.0029 23.9 4.0 62 144-205 37-120 (123)
12 PF12022 DUF3510: Domain of un 21.6 3.9E+02 0.0085 20.8 6.6 72 94-180 21-94 (125)
13 PF10441 Urb2: Urb2/Npa2 famil 20.7 4E+02 0.0086 22.5 6.7 65 115-191 28-92 (223)
14 KOG2321 WD40 repeat protein [G 20.5 1.2E+02 0.0025 30.6 3.7 59 46-109 13-78 (703)
15 PF06215 ISAV_HA: Infectious s 20.2 83 0.0018 29.0 2.4 34 40-92 272-305 (391)
No 1
>KOG0440 consensus Cell cycle-associated protein Mob1-1 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.4e-80 Score=529.21 Aligned_cols=198 Identities=64% Similarity=1.103 Sum_probs=192.8
Q ss_pred CCCccCCCCCCCCCCccchHHHHHHHHhcC-CchhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccCCCCCCCCCC
Q 028521 9 NQRTFRPKKSAPSGSKGAQLRKHIDATLGS-GNLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPTM 87 (208)
Q Consensus 9 ~~~t~~p~~~~~~~~~~~~l~~~~~~~l~~-g~l~~~V~lP~g~d~neWlA~~~~~ff~~in~l~~~~~e~CT~~tCP~M 87 (208)
+.+++++++..+++++++++.++++++|++ |||+++|+||+|+|+|||||+|++|||++||+|||+|+|+||+++||.|
T Consensus 37 ~~~~~~~k~~~~~~s~~~~~~~~~e~~l~s~g~l~~aV~LP~G~D~nEWlA~nt~~fF~qvN~lYGtitEfCT~~sCp~M 116 (243)
T KOG0440|consen 37 AAKPFRKKEASASLSVRPQAKYLAEATLGSSGNLREAVKLPEGEDLNEWLAVNTLDFFNQVNLLYGTITEFCTQQSCPHM 116 (243)
T ss_pred ccccccccccCcccCccHHHHHHHHHhhcccccHHHHhcCCCCCchhhHHHHhHHHHHHHHHHHHHHHHHHcCcccCccc
Confidence 456788888899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhH
Q 028521 88 TAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHF 167 (208)
Q Consensus 88 sAg~~~~YlW~d~~~~~kp~~~sA~~YI~~~~~w~~~~l~de~~FPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~ 167 (208)
+||++++|+|+|+. +||++||||||||++|+|||++++||+|||||.|.+||+||.+.||+|+|||||||||||++||
T Consensus 117 sag~~yeY~W~D~~--~kp~~~sApqYId~lmtw~q~~~dde~iFPtK~g~~FP~nF~~~vk~Ilr~lFrvyAHiY~~Hf 194 (243)
T KOG0440|consen 117 SAGPNYEYLWADEK--GKPVRVSAPQYIDYLMTWCQNQLDDENIFPTKYGNPFPGNFESVVKKILRRLFRVYAHIYHSHF 194 (243)
T ss_pred cCCCcceeeeeccc--CCccccCchHHHHHHHHHHHHhccccccCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999966 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhh-------hccchHHHHHHhhcCC
Q 028521 168 QKIVSLKEEAHLNTCFKHFILFTCV-------KLGPLQELIDSIIVPY 208 (208)
Q Consensus 168 ~~~~~l~~e~hlNt~fkHF~~F~~e-------el~Pl~~li~~l~~~~ 208 (208)
+.|++|++++|||++|+||++|++| |++||++||+.|..+|
T Consensus 195 ~~i~~L~l~ahlNt~F~Hf~~f~~eF~LiD~kE~aPl~~Li~~l~~~d 242 (243)
T KOG0440|consen 195 DEIVALQLEAHLNTSFKHFILFAREFQLLDKKETAPLLELIESLLSQD 242 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccCHHhhhhHHHHHHHHhccC
Confidence 9999999999999999999999999 9999999999998875
No 2
>KOG1903 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.4e-78 Score=495.07 Aligned_cols=200 Identities=53% Similarity=1.049 Sum_probs=196.9
Q ss_pred CCCCCccCCCCCCCCCCccchHHHHHHHHhcCC-chhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccCCCCCCCC
Q 028521 7 GRNQRTFRPKKSAPSGSKGAQLRKHIDATLGSG-NLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCP 85 (208)
Q Consensus 7 ~~~~~t~~p~~~~~~~~~~~~l~~~~~~~l~~g-~l~~~V~lP~g~d~neWlA~~~~~ff~~in~l~~~~~e~CT~~tCP 85 (208)
..+.+||||||++++|+.+|+|++.++|+|.+| ||+.+|+||+|+|.|+|+|+|++||||.||++||+++|+||++|||
T Consensus 10 fnK~KTFRPkkkF~~GT~Rf~LhK~AqAsL~sG~dLr~aV~LPpgEn~nDW~AVHvVDFFNRiNLiYGTise~Cte~sCP 89 (217)
T KOG1903|consen 10 FNKDKTFRPKKKFEPGTQRFELHKKAQASLNSGLDLRSAVRLPPGENLNDWLAVHVVDFFNRINLIYGTISEFCTETSCP 89 (217)
T ss_pred HccCCccCCCCCCCCCceeeehHHHHHHHHhcCcchHHhccCCCCCCccceeeeehhhhhhhhHhhhhhHhhhccccCCC
Confidence 367899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhh
Q 028521 86 TMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHS 165 (208)
Q Consensus 86 ~MsAg~~~~YlW~d~~~~~kp~~~sA~~YI~~~~~w~~~~l~de~~FPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~ 165 (208)
+|++|+.++|+|+|+..|+||+.+|||+||+++||||+.+||||.+||+..|+|||+||.+++++|+.||||||.|+|.|
T Consensus 90 ~MsGG~rYEY~WqD~~~ykkPt~L~Ap~Ym~lLMDWIE~~INnE~vFPt~~~vpFPKnF~qi~~KILtRLFRVFVHVYIH 169 (217)
T KOG1903|consen 90 VMSGGPRYEYRWQDERKYKKPTALSAPRYMALLMDWIEVQINNEEVFPTSVGVPFPKNFLQICKKILTRLFRVFVHVYIH 169 (217)
T ss_pred cccCCCcceeEecccccccCCccCCcHHHHHHHHHHHHHhccccccccccCCCCCcHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcchhHHHHHHHHHHHHhhh-------hccchHHHHHHhhc
Q 028521 166 HFQKIVSLKEEAHLNTCFKHFILFTCV-------KLGPLQELIDSIIV 206 (208)
Q Consensus 166 H~~~~~~l~~e~hlNt~fkHF~~F~~e-------el~Pl~~li~~l~~ 206 (208)
||+.+.++|+|+|.|||||||++|++| ||+||+++.++|+.
T Consensus 170 HFDri~~mGaE~HvNtcYKHFYyFv~Ef~li~~kELEpLkeMT~R~c~ 217 (217)
T KOG1903|consen 170 HFDRILSMGAEAHVNTCYKHFYYFVTEFGLIDTKELEPLKEMTERICH 217 (217)
T ss_pred hhHHHHHhccHHHHHHHHHHHHHHhhhccccchhhcchHHHHHHHhcC
Confidence 999999999999999999999999999 99999999999874
No 3
>PF03637 Mob1_phocein: Mob1/phocein family; InterPro: IPR005301 Mob1 is an essential Saccharomyces cerevisiae (Baker's yeast) protein, identified from a two-hybrid screen, that binds Mps1p, a protein kinase essential for spindle pole body duplication and mitotic checkpoint regulation. Mob1 contains no known structural motifs; however MOB1 is a member of a conserved gene family and shares sequence similarity with a nonessential yeast gene, MOB2. Mob1 is a phosphoprotein in vivo and a substrate for the Mps1p kinase in vitro. Conditional alleles of MOB1 cause a late nuclear division arrest at restrictive temperature []. This family also includes phocein Q9QYW3 from SWISSPROT, a rat protein that by yeast two hybrid interacts with striatin [].; PDB: 2HJN_A 1PI1_A 1R3B_A.
Probab=100.00 E-value=1.6e-75 Score=486.65 Aligned_cols=168 Identities=65% Similarity=1.205 Sum_probs=153.9
Q ss_pred HHHHHHHhcCCchhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccCCCCCCCCCCCCCCCceeEeccCCCCCCCcc
Q 028521 29 RKHIDATLGSGNLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPTMTAGPKYEYRWADGVQIKKPIE 108 (208)
Q Consensus 29 ~~~~~~~l~~g~l~~~V~lP~g~d~neWlA~~~~~ff~~in~l~~~~~e~CT~~tCP~MsAg~~~~YlW~d~~~~~kp~~ 108 (208)
|++++++|++||++++|+||+|+|+|||||+|++||||+||++||+|+|+||++|||+|+||++|+|+|+|++ ++|++
T Consensus 1 ~~~~~~~l~~~~l~~~V~lP~g~d~~eWla~~~~~f~~~in~l~~~v~e~Ct~~tCP~Msag~~~~Ylw~d~~--~kp~~ 78 (175)
T PF03637_consen 1 QQYVQATLGKGNLRTLVKLPKGVDENEWLAVHTVDFFNEINLLYGVVSEFCTPETCPTMSAGPNWEYLWADHK--KKPVK 78 (175)
T ss_dssp HHHHHHHCCGG-HHHHCS-STT--HHHHHHHHHHHHHHHHHHHHHHHGGGS-TTTTSSEESSTTCEE-BSSST--TS-BS
T ss_pred CHHHHHHHhcCCHHHHhcCcCCCChhhHHHHhhHHHHHHHHHHHhhccCcCCcccCcCccCCccceeeeeccC--CCCcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999976 68999
Q ss_pred cChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcchhHHHHHHHHHHH
Q 028521 109 VSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFIL 188 (208)
Q Consensus 109 ~sA~~YI~~~~~w~~~~l~de~~FPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~fkHF~~ 188 (208)
||||+||+++|+|++++|+|+++|||+.|++||++|.++|++|||||||||||||++||+.|.++|+++|||++||||++
T Consensus 79 ~~A~~Yi~~~l~w~~~~l~d~~iFPt~~~~~fp~~f~~~v~~I~rrLfRvyaHiY~~H~~~~~~l~~~~hln~~F~hF~~ 158 (175)
T PF03637_consen 79 CSAPQYIDHLLDWIQSQLNDEKIFPTKPGVPFPKNFKKTVKKIFRRLFRVYAHIYHHHFEQFVELELEAHLNTCFKHFVL 158 (175)
T ss_dssp --HHHHHHHHHHHHHHHHTSTTTSSSSTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHccCcccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh-------hccchH
Q 028521 189 FTCV-------KLGPLQ 198 (208)
Q Consensus 189 F~~e-------el~Pl~ 198 (208)
|++| |++|||
T Consensus 159 f~~eF~Li~~~el~pL~ 175 (175)
T PF03637_consen 159 FAREFDLIDEKELEPLQ 175 (175)
T ss_dssp HHHHHT-S-GGGGGGGH
T ss_pred HHHHhCCCCHHHhcccC
Confidence 9999 888886
No 4
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.8e-37 Score=251.14 Aligned_cols=183 Identities=21% Similarity=0.345 Sum_probs=171.0
Q ss_pred CCCCCCCccchHHHHHHHHhcCC--chhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccCCCCCCCCCCCCCCCce
Q 028521 17 KSAPSGSKGAQLRKHIDATLGSG--NLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPTMTAGPKYE 94 (208)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~l~~g--~l~~~V~lP~g~d~neWlA~~~~~ff~~in~l~~~~~e~CT~~tCP~MsAg~~~~ 94 (208)
-++.+..+...+|+||+.+|+.+ |++.+..+|+|.|++.|-++|+++|+-++|.|--.++..|.++||..|+|++.|.
T Consensus 28 e~feemdstlavqqyiqq~ikadpsnv~~iltppe~qdegvwkyehlrqfc~elnglav~lq~ec~p~tctqmtateqwi 107 (223)
T KOG1852|consen 28 ESFEEMDSTLAVQQYIQQNIKADPSNVDKILTPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWI 107 (223)
T ss_pred chHHHHHhHHHHHHHHHHHhccCchhHHHhcCCCcccccchhhHHHHHHHHHHhhhHHHHHhcccCchHhhhhhhHhHHH
Confidence 34566778888999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred eEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhHHHHHhhc
Q 028521 95 YRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLK 174 (208)
Q Consensus 95 YlW~d~~~~~kp~~~sA~~YI~~~~~w~~~~l~de~~FPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l~ 174 (208)
|||+.|+ .|.+|||++|..|++|.+.-+||+.+.||++.++. ......+..++||.||||+|+|+||+..|...+
T Consensus 108 flcaahk---tpkecpaidytrhtldgaacllnsnkyfpsrvsik--essv~klgsvcrrvyrifsha~fhhr~ifdefe 182 (223)
T KOG1852|consen 108 FLCAAHK---TPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIK--ESSVAKLGSVCRRVYRIFSHAYFHHRKIFDEFE 182 (223)
T ss_pred hhhhhcC---CcccCCcccchhhccccccccccCCccCCcccchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999985 99999999999999999999999999999999886 567899999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhhhhccchHHHHHHhhc
Q 028521 175 EEAHLNTCFKHFILFTCVKLGPLQELIDSIIV 206 (208)
Q Consensus 175 ~e~hlNt~fkHF~~F~~eel~Pl~~li~~l~~ 206 (208)
.|+||+..|+||+. +..|...+.||.+++.
T Consensus 183 ~etylc~rft~~v~--kynlms~e~livpi~~ 212 (223)
T KOG1852|consen 183 NETYLCHRFTKFVS--KYNLMSKENLIVPILP 212 (223)
T ss_pred hhhHHHHHHHHHHH--hhhhccccceeeecCc
Confidence 99999999999976 7788888888877653
No 5
>cd00397 DNA_BRE_C DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site residues. The best-studied members of this diverse superfamily include human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl gener
Probab=32.65 E-value=1.5e+02 Score=21.99 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=21.5
Q ss_pred hCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 028521 126 LDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 157 (208)
Q Consensus 126 l~de~~FPt~~~~~FP~~F~~~v~~I~rrLfR 157 (208)
.+++.+|+...+.+........+..+++++..
T Consensus 84 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (164)
T cd00397 84 GDEEYLFPSRRGGPAATLSRRNVKRIFKAAGR 115 (164)
T ss_pred CCCCceeecCCCCCccCCcHHHHHHHHHHHHH
Confidence 46788999988776554555666666666554
No 6
>PHA03074 late transcription factor VLTF-3; Provisional
Probab=30.76 E-value=66 Score=28.08 Aligned_cols=83 Identities=14% Similarity=0.289 Sum_probs=58.3
Q ss_pred ccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHH----HHHHHHHHHHHHHhhhhhHHHHHhhcchhHHHHHH
Q 028521 108 EVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVV----KTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCF 183 (208)
Q Consensus 108 ~~sA~~YI~~~~~w~~~~l~de~~FPt~~~~~FP~~F~~~v----~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~f 183 (208)
+++-.+=.+.+.+-..+++++..+=+......|-.+|.+.= ++=||..|-+.-|+=-.-.. ..-+--.-++..|
T Consensus 58 rlls~qcs~~ii~ell~lm~kn~i~~~didan~vs~fLK~~~~inkKdYklvfeiiN~~~~e~ln--LttekInei~eIF 135 (225)
T PHA03074 58 RLLSNQCSGEIISELLELMNKNQISTKDVDANFVSSFLKAKERINKKDYKLVFEIINQVKDEKLN--LTTEKINEVVEIF 135 (225)
T ss_pred HHHHhHhhHHHHHHHHHHHHHccCChhhhhHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhccc--ccHHHHHHHHHHH
Confidence 55667777888888888999999888888877777786665 45577777766655332222 1112234567799
Q ss_pred HHHHHHhhh
Q 028521 184 KHFILFTCV 192 (208)
Q Consensus 184 kHF~~F~~e 192 (208)
+||+.|++|
T Consensus 136 k~lvfF~qe 144 (225)
T PHA03074 136 KHLVFFCQE 144 (225)
T ss_pred HHHHHHHhc
Confidence 999999999
No 7
>PF12431 CitT: Transcriptional regulator
Probab=27.56 E-value=50 Score=19.76 Aligned_cols=9 Identities=56% Similarity=0.726 Sum_probs=7.5
Q ss_pred hcCCCCCCc
Q 028521 45 VRLPPGEDL 53 (208)
Q Consensus 45 V~lP~g~d~ 53 (208)
-.||+|+|.
T Consensus 21 ~~LPKGID~ 29 (30)
T PF12431_consen 21 ERLPKGIDE 29 (30)
T ss_pred cCCCCCccc
Confidence 569999985
No 8
>KOG3261 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.15 E-value=49 Score=28.11 Aligned_cols=18 Identities=50% Similarity=0.901 Sum_probs=14.1
Q ss_pred HHHHHHHHH-HHhhhhhHH
Q 028521 151 IFKRLFRVY-AHIYHSHFQ 168 (208)
Q Consensus 151 I~rrLfRVy-aHiY~~H~~ 168 (208)
=|||-|||. |-.|+.||.
T Consensus 121 ~frRkFRVI~a~~y~k~fa 139 (202)
T KOG3261|consen 121 EFRRKFRVIHAPLYFKHFA 139 (202)
T ss_pred HHHhheeeeccHHHHHHhh
Confidence 589999975 677888875
No 9
>PF12186 AcylCoA_dehyd_C: Acyl-CoA dehydrogenase C terminal; InterPro: IPR020964 This entry represents the C-terminal alpha helical domain of some bacterial Acyl-CoA dehydrogenases. It is found in association with PF02770 from PFAM, PF00441 from PFAM, PF02771 from PFAM. There is a conserved ARRL sequence motif. ; PDB: 2OKU_A.
Probab=24.43 E-value=2e+02 Score=22.63 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhhcchhHHHHHHHHHHHHhhhhccchHHHHHHhhc
Q 028521 146 EVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCVKLGPLQELIDSIIV 206 (208)
Q Consensus 146 ~~v~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~fkHF~~F~~eel~Pl~~li~~l~~ 206 (208)
....-.-|||+=..|||+..|.=.-..-....-.-.+-.-|+.++.+|+.--...|..+..
T Consensus 49 e~~Df~ARRLvEMa~~iims~LLl~dA~k~pelf~kSA~Vyvr~ae~ev~~~~~~I~~f~~ 109 (114)
T PF12186_consen 49 ELQDFHARRLVEMAAHIIMSYLLLRDASKAPELFAKSANVYVRYAEAEVAKHAAFIMNFKV 109 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHHHHHHHHHH--G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3445667999999999999998776666553322233344777777787777777777644
No 10
>PF15192 TMEM213: TMEM213 family
Probab=24.18 E-value=52 Score=24.24 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.3
Q ss_pred hHhhcCCCCCCchhHHHHhH
Q 028521 42 REAVRLPPGEDLNEWLAVNT 61 (208)
Q Consensus 42 ~~~V~lP~g~d~neWlA~~~ 61 (208)
..+.-++.|||+.-|||.-+
T Consensus 33 ~Aa~CC~~gvDeyGWIAAAV 52 (82)
T PF15192_consen 33 QAARCCHAGVDEYGWIAAAV 52 (82)
T ss_pred HHHHHhccCCchhhHHHHHH
Confidence 56778899999999999876
No 11
>COG3682 Predicted transcriptional regulator [Transcription]
Probab=23.55 E-value=1.3e+02 Score=23.92 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHH-----------HHHHHhhhhhHHHHHhhcchhHHHHHH--------HHHHHH---hhhhccchHHHH
Q 028521 144 FKEVVKTIFKRLF-----------RVYAHIYHSHFQKIVSLKEEAHLNTCF--------KHFILF---TCVKLGPLQELI 201 (208)
Q Consensus 144 F~~~v~~I~rrLf-----------RVyaHiY~~H~~~~~~l~~e~hlNt~f--------kHF~~F---~~eel~Pl~~li 201 (208)
...+|+++.+||. |.|-+-+-.=.+...+..+...||..| .||+.= ..+|++-|+.++
T Consensus 37 s~sTV~TLl~RL~KKg~l~~~kdgr~~~y~pL~~~~~~~~~~~~~~l~k~~d~~~~~lv~~F~~~~~l~~~eie~L~~il 116 (123)
T COG3682 37 SYSTVKTLLNRLVKKGLLTRKKDGRAFRYSPLLTRDQYVAGESQDLLDKICDGGLASLVAHFAEKEKLTADEIEALKAIL 116 (123)
T ss_pred cHHHHHHHHHHHHhccchhhhhcCCeeeeecccCHHHHHHHHHHHHHHHHHcccchHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4789999999997 566666677778888888888877665 677762 111888888888
Q ss_pred HHhh
Q 028521 202 DSII 205 (208)
Q Consensus 202 ~~l~ 205 (208)
+.+.
T Consensus 117 ~~~~ 120 (123)
T COG3682 117 DEIE 120 (123)
T ss_pred HHHh
Confidence 8763
No 12
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=21.63 E-value=3.9e+02 Score=20.77 Aligned_cols=72 Identities=18% Similarity=0.373 Sum_probs=48.1
Q ss_pred eeEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhHHHHHhh
Q 028521 94 EYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSL 173 (208)
Q Consensus 94 ~YlW~d~~~~~kp~~~sA~~YI~~~~~w~~~~l~de~~FPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l 173 (208)
.|.|+ +||.+-.|..||+.++.=+...++.. +...+ ......+....+.--.+-|+..-..+..-
T Consensus 21 ~YR~T-----nk~~Pt~~S~yV~~il~Pl~~F~~~~-------~~~~~---~~~~~~~~~~v~~~v~~~y~~~~~evL~s 85 (125)
T PF12022_consen 21 QYRMT-----NKPVPTKPSPYVSSILRPLKSFLEEY-------SSYLS---PEIIEEWLQKVITEVTERYYEIASEVLTS 85 (125)
T ss_pred Hhhcc-----CCCCCCCccHHHHHHHHHHHHHHHHh-------hccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67776 46677778999999999999888777 11111 34556666666666677777776655443
Q ss_pred --cchhHHH
Q 028521 174 --KEEAHLN 180 (208)
Q Consensus 174 --~~e~hlN 180 (208)
..|..|.
T Consensus 86 v~KtEeSL~ 94 (125)
T PF12022_consen 86 VRKTEESLK 94 (125)
T ss_pred HHHHHHHHH
Confidence 4455554
No 13
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=20.67 E-value=4e+02 Score=22.51 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcchhHHHHHHHHHHHHhh
Q 028521 115 VEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTC 191 (208)
Q Consensus 115 I~~~~~w~~~~l~de~~FPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~fkHF~~F~~ 191 (208)
|+.++..+.....+.. +....+....||-++.++..+|-.+|+..+... .+++..++...+.-..
T Consensus 28 ie~~l~~~~~~~~~~~----------~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r--~hll~~~l~~LL~~l~ 92 (223)
T PF10441_consen 28 IEQILSILSTLFSSLR----------NTLSADSSPSIFISLCRLLSSILRHHRFKLSGR--FHLLLSVLQRLLRCLF 92 (223)
T ss_pred HHHHHHHHHHHHcccc----------cccccchhHHHHHHHHHHHHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHH
Confidence 6667777776666544 233455667888889999999999999988754 6777777776655444
No 14
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=20.48 E-value=1.2e+02 Score=30.56 Aligned_cols=59 Identities=22% Similarity=0.472 Sum_probs=42.4
Q ss_pred cCCCCCCchhHHHHhHH-------HHHhhhhhhhhhhccCCCCCCCCCCCCCCCceeEeccCCCCCCCccc
Q 028521 46 RLPPGEDLNEWLAVNTV-------DFFNQVNLLYGTLTEFCTAENCPTMTAGPKYEYRWADGVQIKKPIEV 109 (208)
Q Consensus 46 ~lP~g~d~neWlA~~~~-------~ff~~in~l~~~~~e~CT~~tCP~MsAg~~~~YlW~d~~~~~kp~~~ 109 (208)
.+-.|-.+.+||+--.. +.++.| ..|+++=-+..|-.|+.++.-+|+|+-+. |++.++|
T Consensus 13 nvS~~kslP~Wls~r~kR~lkkd~~~~~ri----eLiQdfe~p~ast~ik~s~DGqY~lAtG~-YKP~ikv 78 (703)
T KOG2321|consen 13 NVSAGKSLPDWLSDRRKRQLKKDVDYRQRI----ELIQDFEMPTASTRIKVSPDGQYLLATGT-YKPQIKV 78 (703)
T ss_pred EeecCCCchhhhhhHHHHHHhhchHHHHHH----HHHHhcCCccccceeEecCCCcEEEEecc-cCCceEE
Confidence 34467788899995543 333333 34677877888889999999999999774 6666654
No 15
>PF06215 ISAV_HA: Infectious salmon anaemia virus haemagglutinin; InterPro: IPR010408 This entry represents the haemagglutinin-esterase fusion glycoprotein (HEF) found specifically in infectious anaemia virus (ISAV), an orthomyxovirus-type virus that is an important fish pathogen in marine aquaculture [, ]. Other viruses, such as influenza C virus, coronaviruses and toroviruses, also contain surface HEF proteins, but whereas they usually bind 9-O-acetylsialic acid receptors, ISAV HEF appears to bind 4-O- acetylsialic acid receptors []. Haemagglutinin-esterase fusion glycoprotein is a multi-functional protein embedded in the viral envelope of ISAV. HEF is required for infectivity, and functions to recognise the host cell surface receptor, to fuse the viral and host cell membranes, and to destroy the receptor upon host cell infection. The haemagglutinin region of HEF is responsible for receptor recognition and membrane fusion. The serine esterase region of HEF is responsible for the destruction of the receptor, though it appears to be distinct from the esterase domain found in influenza C virus. Haemagglutinin-esterase glycoproteins must usually be cleaved by the host's trypsin-like proteases to produce two peptides (HEF1 and HEF2) necessary for the virus to be infectious. The cleaved HEF protein can then fuse the viral envelope to the cellular membrane of the host cell, which allows the virus to infect the host cell. More information about haemagglutinin proteins can be found at Protein of the Month: Bird Flu, Haemagglutinin [].
Probab=20.20 E-value=83 Score=28.99 Aligned_cols=34 Identities=32% Similarity=0.700 Sum_probs=22.7
Q ss_pred chhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccCCCCCCCCCCCCCCC
Q 028521 40 NLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPTMTAGPK 92 (208)
Q Consensus 40 ~l~~~V~lP~g~d~neWlA~~~~~ff~~in~l~~~~~e~CT~~tCP~MsAg~~ 92 (208)
+|.+++.+| |+| |--+. .-.|...+||.|--...
T Consensus 272 ~Lte~l~Cp-gvD---W~rid---------------aasCeydsCPkmvk~fD 305 (391)
T PF06215_consen 272 FLTEALTCP-GVD---WKRID---------------AASCEYDSCPKMVKSFD 305 (391)
T ss_pred hhHhhcCCC-CCC---hhhcc---------------ceeeccccchHHHhhhh
Confidence 367777777 665 43222 23699999999985543
Done!