Query 028521
Match_columns 208
No_of_seqs 109 out of 413
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 21:23:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjn_A MPS1 binder 1, maintena 100.0 1.2E-80 4E-85 536.2 21.4 199 8-207 29-236 (236)
2 1pi1_A MOB1A; mitotic EXIT net 100.0 2.6E-79 8.8E-84 512.1 18.0 176 33-208 2-184 (185)
3 1ae9_A Lambda integrase; DNA r 34.3 47 0.0016 24.5 4.3 31 124-157 88-118 (179)
4 3ee1_A Effector protein VIRA; 27.2 21 0.00073 30.6 1.3 44 107-155 147-190 (400)
5 3g46_A Globin-1; oxygen transp 21.9 1.4E+02 0.0046 22.2 4.9 63 143-205 28-98 (146)
6 4hrt_A Globin-2 A chain; oxyge 20.4 1.6E+02 0.0053 22.0 5.0 61 144-204 30-98 (150)
7 2kwv_A RAD30 homolog B, DNA po 19.9 32 0.0011 22.1 0.7 17 40-56 5-21 (48)
8 3c9q_A Uncharacterized protein 14.1 4.8 0.00016 33.6 -5.4 19 150-168 124-143 (205)
9 1z19_A Integrase; protein-DNA 13.7 2.1E+02 0.0073 22.1 4.5 31 124-157 191-221 (283)
10 2kn0_A FN14; tweak, TNF recept 12.7 75 0.0026 21.5 1.2 23 76-100 30-52 (66)
No 1
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-80 Score=536.20 Aligned_cols=199 Identities=47% Similarity=0.880 Sum_probs=177.9
Q ss_pred CCCCccCCCCCCCCCCccchHHHHHHHHhcCC-chhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccCCCCCCCCC
Q 028521 8 RNQRTFRPKKSAPSGSKGAQLRKHIDATLGSG-NLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPT 86 (208)
Q Consensus 8 ~~~~t~~p~~~~~~~~~~~~l~~~~~~~l~~g-~l~~~V~lP~g~d~neWlA~~~~~ff~~in~l~~~~~e~CT~~tCP~ 86 (208)
++++++...+..++|+++|+++++++++|++| |++++|+||+|+|+|||||+|++||||+||+|||+++|+||++|||+
T Consensus 29 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~l~~g~~l~~~V~lP~g~D~neWlA~h~~dFfn~in~lyg~ise~CT~~tCP~ 108 (236)
T 2hjn_A 29 SHQKPFLQPQAGTTVTTHQDIKQIVEMTLGSEGVLNQAVKLPRGEDENEWLAVHCVDFYNQINMLYGSITEFCSPQTCPR 108 (236)
T ss_dssp CCCCCCC------------CHHHHHHHHHHGGGC---CCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTTCSS
T ss_pred CCCCCCCCcCCCCCCccHHHHHHHHHHHhcCCcCHHHHhcCcCCCchhhHHHHHHHHHHHHHHHHHHHHHcccCcccCCC
Confidence 45667744556799999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchH-HHHHHHHHHHHHHHHHhhhh
Q 028521 87 MTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFK-EVVKTIFKRLFRVYAHIYHS 165 (208)
Q Consensus 87 MsAg~~~~YlW~d~~~~~kp~~~sA~~YI~~~~~w~~~~l~de~~FPt~~~~~FP~~F~-~~v~~I~rrLfRVyaHiY~~ 165 (208)
|+||++|+|+|+|+++ ++|++|||||||+++|+||+++|+||++|||+.|++||++|. ++|++|||||||||||||+|
T Consensus 109 MsAg~~~~YlW~d~~~-kkp~~~~A~~Yi~~lm~wi~~~l~de~iFPs~~~~~FP~~F~~~~v~~I~RRLfRVyAHiY~~ 187 (236)
T 2hjn_A 109 MIATNEYEYLWAFQKG-QPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCH 187 (236)
T ss_dssp CBSSTTEEECBCSSTT-SCCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTCCCCTTHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCeeEEeccCCC-CCCeeeCHHHHHHHHHHHHHHhccCCccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999976 799999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHhhcchhHHHHHHHHHHHHhhh-------hccchHHHHHHhhcC
Q 028521 166 HFQKIVSLKEEAHLNTCFKHFILFTCV-------KLGPLQELIDSIIVP 207 (208)
Q Consensus 166 H~~~~~~l~~e~hlNt~fkHF~~F~~e-------el~Pl~~li~~l~~~ 207 (208)
||+.|.++|+|+|||+|||||++|++| ||+||++||+.|+++
T Consensus 188 Hf~~~~~l~~e~hLNt~FkHF~~F~~ef~Li~~kel~PL~~li~~l~~~ 236 (236)
T 2hjn_A 188 HFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLELVMELRDR 236 (236)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSCGGGGGGGHHHHHHHCC-
T ss_pred HHHHHHHcccchhhhhhHHHHHHHHHHhcCCCHHHhhhHHHHHHHHHhC
Confidence 999999999999999999999999999 999999999999763
No 2
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=100.00 E-value=2.6e-79 Score=512.13 Aligned_cols=176 Identities=68% Similarity=1.234 Sum_probs=172.0
Q ss_pred HHHhcCCchhHhhcCCCCCCchhHHHHhHHHHHhhhhhhhhhhccCCCCCCCCCCCCCCCceeEeccCCCCCCCcccChH
Q 028521 33 DATLGSGNLREAVRLPPGEDLNEWLAVNTVDFFNQVNLLYGTLTEFCTAENCPTMTAGPKYEYRWADGVQIKKPIEVSAP 112 (208)
Q Consensus 33 ~~~l~~g~l~~~V~lP~g~d~neWlA~~~~~ff~~in~l~~~~~e~CT~~tCP~MsAg~~~~YlW~d~~~~~kp~~~sA~ 112 (208)
+++|++||++++|+||+|+|+|||||+|++||||+||+|||+++|+||++|||+|+||++|+|+|+|++++++|++||||
T Consensus 2 ~~~l~~g~l~~~v~lP~g~d~~eWla~~~~df~~~in~ly~~i~e~Ct~~tCP~MsAg~~~~Ylw~d~~~~kkp~~~~A~ 81 (185)
T 1pi1_A 2 EATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAP 81 (185)
T ss_dssp CCCTTCCCHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTTCSSEESSTTCEECBCCSSSCCSCBCCCHH
T ss_pred ccchhcCcHHHHhcCcCCCchhhhHHHHHHHHHHHHHHHHHHHhcccCcccCccccCCCCeEEEEecCCCCCCCcccCHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999878899999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcchhHHHHHHHHHHHHhhh
Q 028521 113 KYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCV 192 (208)
Q Consensus 113 ~YI~~~~~w~~~~l~de~~FPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~fkHF~~F~~e 192 (208)
|||+++|+|++++|+||++|||+.|++||++|+++|++|||||||||||||+|||+.|.++|+|+|||||||||++|++|
T Consensus 82 ~Yi~~~m~wi~~~l~d~~iFPs~~~~~fp~~f~~~~~~I~rRLfRVyaHiY~~Hf~~~~~l~~e~hlNt~f~hF~~F~~e 161 (185)
T 1pi1_A 82 KYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQE 161 (185)
T ss_dssp HHHHHHHHHHHHHHTCTTTSCSSTTSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcceehhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------hccchHHHHHHhhcCC
Q 028521 193 -------KLGPLQELIDSIIVPY 208 (208)
Q Consensus 193 -------el~Pl~~li~~l~~~~ 208 (208)
||+||++||+.|++++
T Consensus 162 f~Li~~kel~Pl~~li~~~~~~~ 184 (185)
T 1pi1_A 162 FNLIDRRELAPLQELIEKLGSKD 184 (185)
T ss_dssp HTCSCGGGGGGGHHHHHHSSCCC
T ss_pred hCCCCHHHHHhHHHHHHHHhccC
Confidence 9999999999998753
No 3
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=34.34 E-value=47 Score=24.52 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=20.2
Q ss_pred HhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 028521 124 SQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 157 (208)
Q Consensus 124 ~~l~de~~FPt~~~~~FP~~F~~~v~~I~rrLfR 157 (208)
..-.++-+||+..|.+... ..+.++++++.+
T Consensus 88 ~~~~~~~lF~~~~g~~~~~---~~~~~~~~~~~~ 118 (179)
T 1ae9_A 88 EILGGETIIASTRREPLSS---GTVSRYFMRARK 118 (179)
T ss_dssp HHTCCSBSSCCTTSCCCCH---HHHHHHHHHHHH
T ss_pred ccCCCCeEEEcCCCCcCCh---hHHHHHHHHHHH
Confidence 3456888999998877543 445555555544
No 4
>3ee1_A Effector protein VIRA; beta barrels, six-stranded beta barrel, hydrolase, protease, secreted, thiol protease, virulence; 3.01A {Shigella flexneri}
Probab=27.19 E-value=21 Score=30.64 Aligned_cols=44 Identities=23% Similarity=0.447 Sum_probs=35.0
Q ss_pred cccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 028521 107 IEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRL 155 (208)
Q Consensus 107 ~~~sA~~YI~~~~~w~~~~l~de~~FPt~~~~~FP~~F~~~v~~I~rrL 155 (208)
+--|||+-|+..+.-+.+.+-+...||.+.. +|-..-..|+|-+
T Consensus 147 thkpapevietaincctsiipnddyfpvkdt-----dfnsvwhdiyrdi 190 (400)
T 3ee1_A 147 THKPAPEVIETAINCCTSIIPNDDYFPVKDT-----DFNSVWHDIYRDI 190 (400)
T ss_dssp CSSCCHHHHHHHHHSCEEECCCCSBCCCCTT-----TTTTHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhhhccccCCCCccccccC-----chhhHHHHHHHHh
Confidence 4458999999999999999999999999863 4555555666653
No 5
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=21.87 E-value=1.4e+02 Score=22.20 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHHHHHHh--hhhhHHHHHh----hcchhHHHHHHHHHHHHhhh--hccchHHHHHHhh
Q 028521 143 NFKEVVKTIFKRLFRVYAHI--YHSHFQKIVS----LKEEAHLNTCFKHFILFTCV--KLGPLQELIDSII 205 (208)
Q Consensus 143 ~F~~~v~~I~rrLfRVyaHi--Y~~H~~~~~~----l~~e~hlNt~fkHF~~F~~e--el~Pl~~li~~l~ 205 (208)
+-...-..+|.|||..|=-+ |+.||..+.. -++..|--+++.=....+.. +++.|..++..|.
T Consensus 28 ~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~~l~~~l~~l~ 98 (146)
T 3g46_A 28 DKKGNGVALMTTLFADNQETIGYFKRLGDVSQGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKFA 98 (146)
T ss_dssp GHHHHHHHHHHHHHHHCGGGGGGGGGGCCGGGGGGCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCHHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566677888888887654 6666643322 12234444433333333333 4444556555543
No 6
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=20.42 E-value=1.6e+02 Score=21.99 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHh--hhhhHHHHHhh----cchhHHHHHHHHHHHHhhh--hccchHHHHHHh
Q 028521 144 FKEVVKTIFKRLFRVYAHI--YHSHFQKIVSL----KEEAHLNTCFKHFILFTCV--KLGPLQELIDSI 204 (208)
Q Consensus 144 F~~~v~~I~rrLfRVyaHi--Y~~H~~~~~~l----~~e~hlNt~fkHF~~F~~e--el~Pl~~li~~l 204 (208)
-...-..+|.|||..|=-+ |+.|+..+..- +...|-.++..=+..++.. +++.|..+++.+
T Consensus 30 ~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~~~~~~~~~H~~~v~~al~~~v~~ldd~~~L~~~l~~l 98 (150)
T 4hrt_A 30 IEATGLMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDDPSRLKCVVEKF 98 (150)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGGGGGGCCGGGGGGSHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4566677888888887543 66665333221 2233444433323333333 444555555554
No 7
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=19.92 E-value=32 Score=22.14 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=12.1
Q ss_pred chhHhhcCCCCCCchhH
Q 028521 40 NLREAVRLPPGEDLNEW 56 (208)
Q Consensus 40 ~l~~~V~lP~g~d~neW 56 (208)
|...+..||+|+|....
T Consensus 5 ~~~p~~~lP~~VD~eVF 21 (48)
T 2kwv_A 5 SDLPLQALPEGVDQEVF 21 (48)
T ss_dssp --CCTTSSCTTCCGGGT
T ss_pred ccCccccCCCCCCHHHH
Confidence 45567799999998764
No 8
>3c9q_A Uncharacterized protein C8ORF32; medically relevant, putative involvement in human inherited and disorders of purkinje cell degeneration; HET: MSE; 1.50A {Homo sapiens}
Probab=14.09 E-value=4.8 Score=33.59 Aligned_cols=19 Identities=42% Similarity=0.700 Sum_probs=14.0
Q ss_pred HHHHHHHHHH-HHhhhhhHH
Q 028521 150 TIFKRLFRVY-AHIYHSHFQ 168 (208)
Q Consensus 150 ~I~rrLfRVy-aHiY~~H~~ 168 (208)
.-|||+|||. |..|..||.
T Consensus 124 ~~~~r~FRVIpa~~yL~~Fa 143 (205)
T 3c9q_A 124 PQFRRKFRVICADSYLKNFA 143 (205)
T ss_dssp GGGCCEEEEEEHHHHHHHCC
T ss_pred hhhceeEEEEeHHHHHHhhc
Confidence 3467888887 788887773
No 9
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=13.66 E-value=2.1e+02 Score=22.14 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=19.6
Q ss_pred HhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 028521 124 SQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 157 (208)
Q Consensus 124 ~~l~de~~FPt~~~~~FP~~F~~~v~~I~rrLfR 157 (208)
..-.++-+||+..|.+.. ...+.+.++++.+
T Consensus 191 ~~~~~~~lF~~~~g~~~~---~~~~~~~~~~~~~ 221 (283)
T 1z19_A 191 EILGGETIIASTRREPLS---SGTVSRYFMRARK 221 (283)
T ss_dssp HHHCSSBSSCCTTSSCCC---HHHHHHHHHHHHH
T ss_pred HhCCCCceEeCCCCCcCC---hhhHHHHHHHHHH
Confidence 344688899998887653 3445555555443
No 10
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=12.72 E-value=75 Score=21.52 Aligned_cols=23 Identities=35% Similarity=1.148 Sum_probs=17.9
Q ss_pred ccCCCCCCCCCCCCCCCceeEeccC
Q 028521 76 TEFCTAENCPTMTAGPKYEYRWADG 100 (208)
Q Consensus 76 ~e~CT~~tCP~MsAg~~~~YlW~d~ 100 (208)
++|| ..||+-++.+.+-.+|..-
T Consensus 30 SdfC--~~cps~t~p~~fpllWp~l 52 (66)
T 2kn0_A 30 SDFC--QNCPSKTEQPDFPWIWVEQ 52 (66)
T ss_dssp CTTT--TTCCCCSCSCCCCSSCC--
T ss_pred cccc--cCCCCCCCCCCccchhhhh
Confidence 6788 5899999998888899753
Done!