BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028523
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 356 bits (913), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 171/208 (82%), Positives = 192/208 (92%)
Query: 1 MPGMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLK 60
MPGMTAYAGF EVCSPK+GE VFVSAASGAVGQLVGQFAK++GCYVVGSAGSK+KVDLLK
Sbjct: 136 MPGMTAYAGFHEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLLK 195
Query: 61 NKFGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMI 120
+KFGFDEAFNYKEE DL AALKRYFP+GI+IYFENVGGKMLDAVL+NM++ GRI +CGMI
Sbjct: 196 SKFGFDEAFNYKEEQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGMI 255
Query: 121 SQYNNDKPEGVHNLTCLISKRIRMEGFLVPDYFHLYPKFLEMMIPRIKEGKIVYVEDKAE 180
SQYN ++ EGVHNL CLI+KRIRMEGFLV DY+HLYPK+LEM+IP+IK GK+VYVED A
Sbjct: 256 SQYNLEQTEGVHNLFCLITKRIRMEGFLVFDYYHLYPKYLEMVIPQIKAGKVVYVEDVAH 315
Query: 181 GLESAPAALVGLFSGRNVGKQVVEVATE 208
GLESAP ALVGLFSGRN+GKQVV V+ E
Sbjct: 316 GLESAPTALVGLFSGRNIGKQVVMVSRE 343
>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3H|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3I|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3I|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3J|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
pdb|2J3K|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
Length = 345
Score = 320 bits (821), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 155/208 (74%), Positives = 179/208 (86%)
Query: 1 MPGMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLK 60
MPGMTAYAGF+EVCSPK+GE V+VSAASGAVGQLVGQ AK++GCYVVGSAGSK+KVDLLK
Sbjct: 138 MPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLK 197
Query: 61 NKFGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMI 120
KFGFD+AFNYKEE DL AALKR FP GI+IYFENVGGKMLDAVL+NM + GRI +CGMI
Sbjct: 198 TKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMI 257
Query: 121 SQYNNDKPEGVHNLTCLISKRIRMEGFLVPDYFHLYPKFLEMMIPRIKEGKIVYVEDKAE 180
SQYN + EGVHNL+ +I KR R++GF+V D++ Y KFLE ++P I+EGKI YVED A+
Sbjct: 258 SQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVAD 317
Query: 181 GLESAPAALVGLFSGRNVGKQVVEVATE 208
GLE AP ALVGLF G+NVGKQVV VA E
Sbjct: 318 GLEKAPEALVGLFHGKNVGKQVVVVARE 345
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 186 bits (472), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 130/206 (63%), Gaps = 2/206 (0%)
Query: 1 MPGMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLK 60
M GMTAY +V PK GE V +S A+GAVG + GQ A+L GC VVG AG +K L
Sbjct: 132 MTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLV 191
Query: 61 NKFGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMI 120
+ GFD A +YK E DL A LKR P+GI+++F+NVGG++LD VL + + RI LCG I
Sbjct: 192 EELGFDGAIDYKNE-DLAAGLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAI 250
Query: 121 SQYNNDKP-EGVHNLTCLISKRIRMEGFLVPDYFHLYPKFLEMMIPRIKEGKIVYVEDKA 179
SQYNN + G N L+ R RMEG +V DY +P+ L+ M + EGK+ ED
Sbjct: 251 SQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDIV 310
Query: 180 EGLESAPAALVGLFSGRNVGKQVVEV 205
EGLE+ P L+ LFSG N GK V++V
Sbjct: 311 EGLETFPETLLKLFSGENFGKLVLKV 336
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/206 (48%), Positives = 134/206 (65%), Gaps = 5/206 (2%)
Query: 1 MPGMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLK 60
MPG+TAY G EVC K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS +K+ LK
Sbjct: 128 MPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK 187
Query: 61 NKFGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMI 120
+ GFD AFNYK L+ ALK+ P+G + YF+NVGG+ L+ VL M+ G+I +CG I
Sbjct: 188 -QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAI 246
Query: 121 SQYN--NDKPEGVHNLTCLISKRIRMEGFLVPDYF-HLYPKFLEMMIPRIKEGKIVYVED 177
S YN + P G + +I K++R+EGF+V + + K L ++ + EGKI Y E
Sbjct: 247 SVYNRMDQLPPG-PSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEH 305
Query: 178 KAEGLESAPAALVGLFSGRNVGKQVV 203
+G E+ PAA + + +G N+GK VV
Sbjct: 306 VTKGFENMPAAFIEMLNGANLGKAVV 331
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 126/206 (61%), Gaps = 3/206 (1%)
Query: 1 MPGMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLK 60
MPG+TAY G E+C K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS +KV L+
Sbjct: 123 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ 182
Query: 61 NKFGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMI 120
K GFD FNYK L+ LK+ P+G + YF+NVGG+ + V+ M+ GRI +CG I
Sbjct: 183 -KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAI 241
Query: 121 SQYNNDKPEGVHNLT-CLISKRIRMEGFLVPDYF-HLYPKFLEMMIPRIKEGKIVYVEDK 178
S YN P +I + +RME F+V + K L+ ++ + EGKI Y E
Sbjct: 242 STYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYI 301
Query: 179 AEGLESAPAALVGLFSGRNVGKQVVE 204
EG E+ PAA +G+ G N+GK +V+
Sbjct: 302 IEGFENMPAAFMGMLKGDNLGKTIVK 327
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/206 (45%), Positives = 126/206 (61%), Gaps = 3/206 (1%)
Query: 1 MPGMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLK 60
MPG+TAY G E+C K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS +KV L+
Sbjct: 144 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ 203
Query: 61 NKFGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMI 120
K GFD FNYK L+ LK+ P+G + YF+NVGG+ + V+ M+ GRI +CG I
Sbjct: 204 -KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAI 262
Query: 121 SQYNNDKPEGVHNLT-CLISKRIRMEGFLVPDYF-HLYPKFLEMMIPRIKEGKIVYVEDK 178
S YN P +I + +RME F+V + K L+ ++ + EGKI Y E
Sbjct: 263 STYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEYI 322
Query: 179 AEGLESAPAALVGLFSGRNVGKQVVE 204
EG E+ PAA +G+ G N+GK +V+
Sbjct: 323 IEGFENMPAAFMGMLKGDNLGKTIVK 348
>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And 15-Keto-Pge2
pdb|2ZB7|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph And Nicotinamide
pdb|2ZB8|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And Indomethacin
Length = 357
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 18/220 (8%)
Query: 1 MPGMTAYAGFFEVCSPKQG--EYVFVSAASGAVGQLVGQFAKLVGCY-VVGSAGSKDKVD 57
MPG+T+ G E G + + VS A+GA G + GQ +GC VVG G+ +K
Sbjct: 141 MPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCI 200
Query: 58 LLKNKFGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLC 117
LL ++ GFD A NYK++ ++ L+ P G+++YF+NVGG + D V+ M I LC
Sbjct: 201 LLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIILC 259
Query: 118 GMISQYNNDKP---------EGVHNLTCLISKRIRMEGFLVPDYFHLYPKFLEMMIPRIK 168
G ISQYN D P E + + I E FLV +Y + + + K
Sbjct: 260 GQISQYNKDVPYPPPLSPAIEAIQK-----ERNITRERFLVLNYKDKFEPGILQLSQWFK 314
Query: 169 EGKIVYVEDKAEGLESAPAALVGLFSGRNVGKQVVEVATE 208
EGK+ E GLE+ AA + +G N+GKQ+V ++ E
Sbjct: 315 EGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEE 354
>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
18beta-Glycyrrhetinic Acid
pdb|2VNA|A Chain A, Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (
Zadh1)
pdb|2W98|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
pdb|2W98|B Chain B, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
Length = 357
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 114/220 (51%), Gaps = 18/220 (8%)
Query: 1 MPGMTAYAGFFEVCSPKQG--EYVFVSAASGAVGQLVGQFAKLVGC-YVVGSAGSKDKVD 57
MPG+T+ G E G + + VS A+GA G + GQ +GC VVG G+ +K
Sbjct: 136 MPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCI 195
Query: 58 LLKNKFGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLC 117
LL ++ GFD A NYK++ ++ L+ P G+++YF+NVGG + D V+ M I LC
Sbjct: 196 LLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIILC 254
Query: 118 GMISQYNNDKP---------EGVHNLTCLISKRIRMEGFLVPDYFHLYPKFLEMMIPRIK 168
G ISQYN D P E + + I E FLV +Y + + + K
Sbjct: 255 GQISQYNKDVPYPPPLSPAIEAIQK-----ERNITRERFLVLNYKDKFEPGILQLSQWFK 309
Query: 169 EGKIVYVEDKAEGLESAPAALVGLFSGRNVGKQVVEVATE 208
EGK+ E GLE+ AA + +G N+GKQ+V ++ E
Sbjct: 310 EGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEE 349
>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph
Length = 353
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 115/215 (53%), Gaps = 8/215 (3%)
Query: 1 MPGMTAYAGFFEV--CSPKQGEYVFVSAASGAVGQLVGQFAKLVGCY-VVGSAGSKDKVD 57
MPG+T+ G E S + + VS A+GA G L GQ L+GC VVG G+++K
Sbjct: 137 MPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCL 196
Query: 58 LLKNKFGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLC 117
L ++ GFD A NYK ++ L+ P G+++YF+NVGG + +AV+ M I LC
Sbjct: 197 FLTSELGFDAAVNYKT-GNVAEQLREACPGGVDVYFDNVGGDISNAVISQMNENSHIILC 255
Query: 118 GMISQYNNDKPEGVHNLTCLISKR----IRMEGFLVPDYFHLYPKFLEMMIPRIKEGKIV 173
G ISQY+ND P + + R I E F V +Y + + + KEGK+
Sbjct: 256 GQISQYSNDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEGKLK 315
Query: 174 YVEDKAEGLESAPAALVGLFSGRNVGKQVVEVATE 208
E A+GLE+ A + +G NVGKQ+V ++ +
Sbjct: 316 VKETMAKGLENMGVAFQSMMTGGNVGKQIVCISED 350
>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent
Oxidoreductase From Mus Musculus At 2.10 A Resolution
Length = 363
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 109/214 (50%), Gaps = 8/214 (3%)
Query: 2 PGMTAYAGFFEV--CSPKQGEYVFVSAASGAVGQLVGQFAKLVGCY-VVGSAGSKDKVDL 58
PG+T+ G E S + VS A+GA G L GQ L+GC VVG G+++K
Sbjct: 148 PGLTSLIGVQEKGHISAGSNQTXVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLF 207
Query: 59 LKNKFGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCG 118
L ++ GFD A NYK ++ L+ P G+++YF+NVGG + + V+ I LCG
Sbjct: 208 LTSELGFDAAVNYKT-GNVAEQLREACPGGVDVYFDNVGGDISNTVISQXNENSHIILCG 266
Query: 119 MISQYNNDKPEGVHNLTCLISKR----IRMEGFLVPDYFHLYPKFLEMMIPRIKEGKIVY 174
ISQYN D P + + R I E F V +Y + + + KEGK+
Sbjct: 267 QISQYNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWFKEGKLKV 326
Query: 175 VEDKAEGLESAPAALVGLFSGRNVGKQVVEVATE 208
E A+GLE+ A +G NVGKQ+V ++ +
Sbjct: 327 KETVAKGLENXGVAFQSXXTGGNVGKQIVCISED 360
>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product
pdb|2C0C|B Chain B, Structure Of The Mgc45594 Gene Product
pdb|2X1H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Raloxifene
pdb|2X1H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Raloxifene
Length = 362
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 18/217 (8%)
Query: 3 GMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNK 62
G TAY E+ +G+ V V+AA+G GQ Q +K C+V+G+ S +K LK+
Sbjct: 148 GTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS- 206
Query: 63 FGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMISQ 122
G D NYK EP + LK+ +PEG+++ +E+VGG M D + + +GR+ + G IS
Sbjct: 207 LGCDRPINYKTEP-VGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISG 265
Query: 123 YNNDKPEGVHNLTC------LISKRIRMEGFLVPDYFHLYPKFLEMMIPRIKEGKIV--- 173
Y P G+ + L+ K ++GF + Y Y + ++ G +V
Sbjct: 266 YQT--PTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEV 323
Query: 174 -----YVEDKAEGLESAPAALVGLFSGRNVGKQVVEV 205
E + GLES A+ ++ G+N GK VVE+
Sbjct: 324 DLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVEL 360
>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Fenoprofen
pdb|2X7H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Fenoprofen
Length = 370
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 18/217 (8%)
Query: 3 GMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNK 62
G TAY E+ +G+ V V+AA+G GQ Q +K C+V+G+ S +K LK+
Sbjct: 156 GTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS- 214
Query: 63 FGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMISQ 122
G D NYK EP + LK+ +PEG+++ +E+VGG M D + + +GR+ + G IS
Sbjct: 215 LGCDRPINYKTEP-VGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISG 273
Query: 123 YNNDKPEGVHNLTC------LISKRIRMEGFLVPDYFHLYPKFLEMMIPRIKEGKIV--- 173
Y P G+ + L+ K ++GF + Y Y + ++ G +V
Sbjct: 274 YQT--PTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEV 331
Query: 174 -----YVEDKAEGLESAPAALVGLFSGRNVGKQVVEV 205
E + GLES A+ ++ G+N GK VVE+
Sbjct: 332 DLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVEL 368
>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Diclofenac
pdb|2WEK|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Diclofenac
Length = 341
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 18/217 (8%)
Query: 3 GMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNK 62
G TAY E+ +G+ V V+AA+G GQ Q +K C+V+G+ S +K LK+
Sbjct: 127 GTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS- 185
Query: 63 FGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMISQ 122
G D NYK EP + LK+ +PEG+++ +E+VGG M D + + +GR+ + G IS
Sbjct: 186 LGCDRPINYKTEP-VGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISG 244
Query: 123 YNNDKPEGVHNLTC------LISKRIRMEGFLVPDYFHLYPKFLEMMIPRIKEGKIV--- 173
Y P G+ + L+ K ++GF + Y Y + ++ G +V
Sbjct: 245 YQT--PTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEV 302
Query: 174 -----YVEDKAEGLESAPAALVGLFSGRNVGKQVVEV 205
E + GLES A+ ++ G+N GK VVE+
Sbjct: 303 DLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVEL 339
>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (
Tp53i3,Pig3)
Length = 354
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 21/214 (9%)
Query: 4 MTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKF 63
+TA+ V + + G+YV + A VG Q ++ G + +AGS+ K+ + + K
Sbjct: 148 LTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE-KL 206
Query: 64 GFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMISQY 123
G FNYK+E +A LK G+N+ + +GG + + + + GR L G++
Sbjct: 207 GAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGG 266
Query: 124 NNDKPEGVHNLTCLISKRIRMEGFLVPDYFH---------LYPKFLEMMIPRIK-EG--K 171
+ + P L SK + G L+ L F E ++P EG +
Sbjct: 267 DINGP--------LFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQR 318
Query: 172 IVYVEDKAEGLESAPAALVGLFSGRNVGKQVVEV 205
++ V D+ + A + + +N+GK V+E+
Sbjct: 319 LLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLEL 352
>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|B Chain B, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|C Chain C, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|D Chain D, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|E Chain E, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
Length = 338
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 21/214 (9%)
Query: 4 MTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKF 63
+TA+ V + + G+YV + A VG Q ++ G + +AGS+ K+ + + K
Sbjct: 132 LTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAE-KL 190
Query: 64 GFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMISQY 123
G FNYK+E +A LK G+N+ + +GG + + + + GR L G++
Sbjct: 191 GAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGG 250
Query: 124 NNDKPEGVHNLTCLISKRIRMEGFLVPDYFH---------LYPKFLEMMIPRIK-EG--K 171
+ + P L SK + G L+ L F E ++P EG +
Sbjct: 251 DINGP--------LFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQR 302
Query: 172 IVYVEDKAEGLESAPAALVGLFSGRNVGKQVVEV 205
++ V D+ + A + + +N+GK V+E+
Sbjct: 303 LLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLEL 336
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 4 MTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKF 63
+TA+ + + G+ V V AA V Q AKL G V+ +AGS+DK+ K
Sbjct: 152 LTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL 210
Query: 64 GFDEAFNYKEEPDLDAALKRYF-PEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMISQ 122
G DE NY PD ++R +G + ++ G + V+ GRI + G S
Sbjct: 211 GADETVNYT-HPDWPKEVRRLTGGKGADKVVDHTGALYFEGVIKATANGGRIAIAGASSG 269
Query: 123 YNNDKPEGVHNLTCLISKRIRMEGFLVPDYFHLYP--KFLEMMIPRIKEGKIVYVEDKAE 180
Y EG + +++ + G + L+P +F+E + G+++ +E AE
Sbjct: 270 Y-----EGTLPFAHVFYRQLSILGSTMASKSRLFPILRFVEEGKLKPVVGQVLPLEAAAE 324
Query: 181 G 181
G
Sbjct: 325 G 325
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 1 MPGMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDL-L 59
+P TAY K GE V V ASG VG Q A+ G ++G+AG+++ + L
Sbjct: 153 IPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL 212
Query: 60 KNKFGFDEAFNYKEEPDLDAALKRYFPE-GINIYFENVGGKMLDAVLLNMRIQGRITLCG 118
+N G E FN++E +D +K+Y E GI+I E + L L + GR+ + G
Sbjct: 213 QN--GAHEVFNHREVNYID-KIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVG 269
>pdb|4DUP|A Chain A, Crystal Structure Of A Quinone Oxidoreductase From
Rhizobium Etli Cfn 42
pdb|4DUP|B Chain B, Crystal Structure Of A Quinone Oxidoreductase From
Rhizobium Etli Cfn 42
Length = 353
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 15/208 (7%)
Query: 5 TAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKFG 64
T +A F+ +GE V + + +G Q A+ G V +AGS K + + + G
Sbjct: 154 TVWANLFQXAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RLG 212
Query: 65 FDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRIT----LCGMI 120
NY+ E D A +K +G++I + +G + + ++ G ++ L G +
Sbjct: 213 AKRGINYRSE-DFAAVIKAETGQGVDIILDXIGAAYFERNIASLAKDGCLSIIAFLGGAV 271
Query: 121 SQYNNDKPEGVHNLTCLISK---RIRMEGFLVPDYFHLYPKFLEMMIPRIKEGKIVYVED 177
++ N P V LT S R E + D L + P ++ G + V
Sbjct: 272 AEKVNLSPIXVKRLTVTGSTXRPRTAEEKRAIRD------DLLSEVWPLLEAGTVAPVIH 325
Query: 178 KAEGLESAPAALVGLFSGRNVGKQVVEV 205
K E A L G +VGK + V
Sbjct: 326 KVFAFEDVADAHRLLEEGSHVGKVXLTV 353
>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase
Length = 333
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MPGMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLK 60
+ GMTA + K G+YV + AA+G +G ++ +A+ +G V+G+ +++K + +
Sbjct: 128 LKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR 187
Query: 61 NKFGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMI 120
K G NY + + + +G+++ ++++G L L +R +G G
Sbjct: 188 -KLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGMCAAYGHA 246
Query: 121 S 121
S
Sbjct: 247 S 247
>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWB|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
Length = 334
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 4 MTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKF 63
+TA + E K+G+YV + AA+G VG ++ Q K+ G + + A + +K+ + K ++
Sbjct: 134 LTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK-EY 192
Query: 64 GFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQG 112
G + N +E L LK +G++ F++VG + L ++ +G
Sbjct: 193 GAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKG 241
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 44.7 bits (104), Expect = 4e-05, Method: Composition-based stats.
Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 14/212 (6%)
Query: 5 TAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKF- 63
TAY + GE V + + SG VGQ A GC V + GS +K L+ +F
Sbjct: 1654 TAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFP 1713
Query: 64 GFDEA--FNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMIS 121
DE N ++ L+ +G+++ ++ + L A + + GR G
Sbjct: 1714 QLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLEIGKFD 1773
Query: 122 QYNNDKPEGVHNL-TCLISKRIRMEGFLVPDYFH----LYPKFLEMMIPRIKEGKIVYVE 176
NN H L + K + G L+ F + + E++ I+EG + ++
Sbjct: 1774 LSNN------HALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLK 1827
Query: 177 DKAEGLESAPAALVGLFSGRNVGKQVVEVATE 208
AA + G+++GK V++V E
Sbjct: 1828 CTVFPRTKVEAAFRYMAQGKHIGKVVIQVREE 1859
>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
pdb|4A27|B Chain B, Crystal Structure Of Human Synaptic Vesicle Membrane
Protein Vat-1 Homolog-Like Protein
Length = 349
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 4 MTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKF 63
+TAY FEV + ++G V V +A G VGQ V Q V V S K + +K+
Sbjct: 128 VTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSV 187
Query: 64 G--FDEAFNYKEEPDLDAALKRYFPEGINIYFENVGG 98
FD +Y +E +KR EG++I + + G
Sbjct: 188 THLFDRNADYVQE------VKRISAEGVDIVLDCLCG 218
>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3UOG|B Chain B, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 363
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 2/128 (1%)
Query: 3 GMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNK 62
G+TA+ E + G+ V V +G V Q AK G V+ ++ S++K+D
Sbjct: 174 GLTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDR-AFA 231
Query: 63 FGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMISQ 122
G D N EE ++ G + E GG L L + GRI++ G++
Sbjct: 232 LGADHGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEG 291
Query: 123 YNNDKPEG 130
+ P G
Sbjct: 292 FEVSGPVG 299
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 4 MTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKF 63
+TA+ EV GE V + +A+G VG AK++G + +AGS K ++L ++
Sbjct: 24 LTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML-SRL 82
Query: 64 GFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKML 101
G + + + D L+ G+++ ++ G+ +
Sbjct: 83 GVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAI 120
>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|B Chain B, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|C Chain C, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
pdb|2HCY|D Chain D, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae
Fermentative Enzyme
Length = 347
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 19 GEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEPDLD 78
G +V +S A+G +G L Q+AK +G V+G G + K +L ++ G + ++ +E D+
Sbjct: 170 GHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS-IGGEVFIDFTKEKDIV 228
Query: 79 AALKRYFPEGIN-IYFENVGGKMLDAVLLNMRIQGRITLCGM 119
A+ + G + + +V ++A +R G L GM
Sbjct: 229 GAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGM 270
>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
pdb|1QOR|B Chain B, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
Length = 327
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 1 MPGMTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLK 60
+ G+T Y + K E AA+G VG + Q+AK +G ++G+ G+ K
Sbjct: 123 LKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL 182
Query: 61 NKFGFDEAFNYKEEPDLDAALKRYF-PEGINIYFENVGGKMLDAVLLNMRIQG 112
K G + NY+EE DL LK + + + +++VG + L ++ +G
Sbjct: 183 -KAGAWQVINYREE-DLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRG 233
>pdb|3HZZ|A Chain A, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|B Chain B, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|C Chain C, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
pdb|3HZZ|D Chain D, 2.4 Angstrom Crystal Structure Of Streptomyces Collinus
Crotonyl Coa CarboxylaseREDUCTASE
Length = 467
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 23/144 (15%)
Query: 2 PGMTAYAGFFEVCSP-----KQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKV 56
PG+ + ++ S KQG+ V + ASG +G QFA G + S K
Sbjct: 225 PGLVNSTAYRQLVSRNGAAMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKA 284
Query: 57 DLLKNKFGFDEAFN--------YKEEPDLDAALKRYF---------PEGINIYFENVGGK 99
++ ++ G + + +K+E D + F E I+I FE+ G +
Sbjct: 285 EICRS-MGAEAIIDRNAEGYKFWKDEHTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRE 343
Query: 100 MLDAVLLNMRIQGRITLCGMISQY 123
A + R G IT C S Y
Sbjct: 344 TFGASVYVTRKGGTITTCASTSGY 367
>pdb|3JYL|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase
pdb|3JYN|A Chain A, Crystal Structures Of Pseudomonas Syringae Pv. Tomato
Dc3000 Quinone Oxidoreductase Complexed With Nadph
Length = 325
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 17 KQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEE 74
K GE + AA+G VG L Q+AK +G ++G+ S +K K G E +Y E
Sbjct: 139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-ALGAWETIDYSHE 195
>pdb|3KRT|A Chain A, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|B Chain B, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|C Chain C, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
pdb|3KRT|D Chain D, Crystal Structure Of Putative Crotonyl Coa Reductase From
Streptomyces Coelicolor A3(2)
Length = 456
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 23/144 (15%)
Query: 2 PGMTAYAGFFEVCSP-----KQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKV 56
PG+ + ++ S KQG+ V + ASG +G QFA G + S K
Sbjct: 207 PGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKA 266
Query: 57 DLLKNKFGFDEAFN--------YKEEPDLDAALKRYF---------PEGINIYFENVGGK 99
++ + G + + +K+E D + F E I+I FE+ G +
Sbjct: 267 EICR-AMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRE 325
Query: 100 MLDAVLLNMRIQGRITLCGMISQY 123
A + R G IT C S Y
Sbjct: 326 TFGASVFVTRKGGTITTCASTSGY 349
>pdb|3SLK|A Chain A, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
pdb|3SLK|B Chain B, Structure Of Ketoreductase And Enoylreductase Didomain
From Modular Polyketide Synthase
Length = 795
Score = 36.6 bits (83), Expect = 0.009, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 4 MTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDK---VDLLK 60
+TAY ++ + GE + V +A+G VG Q A+ +G V +A S+DK V+L +
Sbjct: 331 LTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATA-SEDKWQAVELSR 389
Query: 61 NKFGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCG 118
++ E+ L A R G+++ ++ G+ DA L + GR G
Sbjct: 390 EHLASSRTCDF-EQQFLGATGGR----GVDVVLNSLAGEFADASLRMLPRGGRFLELG 442
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
Query: 5 TAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKFG 64
TAY + + G+ V +A++ VGQ V Q A +G + + + L ++
Sbjct: 154 TAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK 213
Query: 65 FDEAFNYKEEPDL-DAALKRYFPE--GINIYFENVGGKMLDAVLLNMRIQGR-ITLCGMI 120
A + E +L +K +F + + VGGK +L + G +T GM
Sbjct: 214 SLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMA 273
Query: 121 SQYNNDKPEGVHNLTCLISKRIRMEGFLVPDYF--HLYPKFLEMMI 164
Q V +++ LI K +++ GF + + H +F E+++
Sbjct: 274 KQ------PVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELIL 313
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 12/166 (7%)
Query: 5 TAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKFG 64
TAY + + G+ V +A++ VGQ V Q A +G + + + L ++
Sbjct: 141 TAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK 200
Query: 65 FDEAFNYKEEPDL-DAALKRYFPE--GINIYFENVGGKMLDAVLLNMRIQGR-ITLCGMI 120
A + E +L +K +F + + VGGK +L + G +T GM
Sbjct: 201 SLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGGMA 260
Query: 121 SQYNNDKPEGVHNLTCLISKRIRMEGFLVPDYF--HLYPKFLEMMI 164
Q V +++ LI K +++ GF + + H +F E+++
Sbjct: 261 KQ------PVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELIL 300
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 44 CYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEPDLDAALKRYFPEGIN--------IYFEN 95
Y+VG + K+GFD FN+K + A K FP G N +Y
Sbjct: 228 VYLVGEVWDISETVAPYFKYGFDSTFNFKLAEAVIATAKAGFPFGFNKKAKHIYGVYDRE 287
Query: 96 VG-GKMLDAVLLNMRIQGRI 114
VG G +DA L Q RI
Sbjct: 288 VGFGNYIDAPFLTNHDQNRI 307
>pdb|3GMS|A Chain A, Crystal Structure Of Putative Nadph:quinone Reductase From
Bacillus Thuringiensis
Length = 340
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/119 (17%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 4 MTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVG-SAGSKDKVDLLKNK 62
+TA+ E + ++ + + V+A A+G L Q ++++ ++ + +K +LL +
Sbjct: 130 LTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELL--R 187
Query: 63 FGFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCGMIS 121
G + P + ++ G + +++GG + + ++R G G++S
Sbjct: 188 LGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLS 246
>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
pdb|3GAZ|B Chain B, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
Length = 343
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 4 MTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKF 63
+TA+ G + + G+ V + G VG + Q A G V +A D ++ +++
Sbjct: 136 ITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATARGSD-LEYVRDLG 194
Query: 64 GFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLC 117
+ EP+ D A + +G ++ ++ +GG +LDA ++ G + C
Sbjct: 195 A--TPIDASREPE-DYAAEHTAGQGFDLVYDTLGGPVLDASFSAVKRFGHVVSC 245
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 90 NIYFENVGGKMLDAVLLNMRIQGRITLCGMISQ 122
N+YF+++ K+L AV+L G+ T+C I+Q
Sbjct: 17 NLYFQSMASKLLRAVILGPPGSGKGTVCQRIAQ 49
>pdb|4A0S|A Chain A, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A0S|B Chain B, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A0S|C Chain C, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A0S|D Chain D, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
In Complex With Nadp And 2-Octenoyl-Coa
pdb|4A10|A Chain A, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp.
pdb|4A10|B Chain B, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp.
pdb|4A10|C Chain C, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp.
pdb|4A10|D Chain D, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
From Streptomyces Sp
Length = 447
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 16/123 (13%)
Query: 17 KQGEYVFVSAASGAVGQLVGQFAKLVG---CYVVGSAGSKDKV-----DLLKNKFGFDEA 68
KQG+ V + ASG +G QF K G VV SA + V DL+ N+
Sbjct: 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGIT 278
Query: 69 FNYKEEPDLDAALKRYFPEGI--------NIYFENVGGKMLDAVLLNMRIQGRITLCGMI 120
+ ++P R + + +I FE+ G ++ R G + CG
Sbjct: 279 DDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSS 338
Query: 121 SQY 123
S Y
Sbjct: 339 SGY 341
>pdb|1VDY|A Chain A, Nmr Structure Of The Hypothetical Enth-Vhs Domain
At3g16270 From Arabidopsis Thaliana
pdb|2DCP|A Chain A, Fully Automated Nmr Structure Determination Of The
Enth-Vhs Domain At3g16270 From Arabidopsis Thaliana
Length = 140
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 34 LVGQFAKLVGCYVVGSAGSKDKVDLLKNKFGFDEAFNYKEEPD------LDAALKRYFPE 87
+V Q A + Y VG +GS+ + ++ +N F+YK PD L+ A++ E
Sbjct: 64 IVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHE 123
Query: 88 GINIYFENVGG 98
I+ F G
Sbjct: 124 TISAIFSEENG 134
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 128 PEGVHNLTCLISKRIRME-GFLVPDYFHLYPKFLEMMIPRIKEGKIVYVEDKAEGLESAP 186
P G++ + CLI++ R E GFLV +F+E P+ K+ V +AE +E
Sbjct: 277 PTGIYGVGCLITEGSRGEGGFLVNSEGE---RFMERYAPKAKDLASRDVVSRAETIE--- 330
Query: 187 AALVGLFSGRNVGKQ 201
+ GR VG +
Sbjct: 331 -----IMEGRGVGPE 340
>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 4 MTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKF 63
+TAY + + GE V V AA+GA+G Q A+ +G V+ +A +K+ L
Sbjct: 112 LTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPLAL 169
Query: 64 GFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCG 118
G +EA Y E P+ A G+++ E V GK ++ L + GR+ G
Sbjct: 170 GAEEAATYAEVPERAKAWG-----GLDLVLE-VRGKEVEESLGLLAHGGRLVYIG 218
>pdb|2CF2|D Chain D, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|M Chain M, Architecture Of Mammalian Fatty Acid Synthase
Length = 295
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 4 MTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKF 63
+TAY + + GE V V AA+GA+G Q A+ +G V+ +A +K+ L
Sbjct: 112 LTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPLAL 169
Query: 64 GFDEAFNYKEEPD 76
G +EA Y E P+
Sbjct: 170 GAEEAATYAEVPE 182
>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 4 MTAYAGFFEVCSPKQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDKVDLLKNKF 63
+TAY + + GE V V AA+GA+G Q A+ G V+ +A +K+ L
Sbjct: 112 LTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAXGLRVLAAASRPEKLA-LPLAL 169
Query: 64 GFDEAFNYKEEPDLDAALKRYFPEGINIYFENVGGKMLDAVLLNMRIQGRITLCG 118
G +EA Y E P+ A G+++ E V GK ++ L + GR+ G
Sbjct: 170 GAEEAATYAEVPERAKAWG-----GLDLVLE-VRGKEVEESLGLLAHGGRLVYIG 218
>pdb|1DIL|A Chain A, Sialidase From Salmonella Typhimurium Complexed With Apana
And Epana Inhibitors
pdb|1DIM|A Chain A, Sialidase From Salmonella Typhimurium Complexed With Epana
Inhibitor
pdb|2SIL|A Chain A, The Structures Of Salmonella Typhimurium Lt2 Neuraminidase
And Its Complex With A Transition State Analogue At 1.6
Angstroms Resolution
pdb|2SIM|A Chain A, The Structures Of Salmonella Typhimurium Lt2 Neuraminidase
And Its Complex With A Transition State Analogue At 1.6
Angstroms Resolution
Length = 381
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 83 RYFPEGINIYFENVGGKM---LDAVLLNMRIQGRITLCGMISQY-NNDKPEGVH 132
+ + + I IY + V K+ +D + IQGR T+ M+ ++ NNDK G +
Sbjct: 77 KTWNKKIAIYNDRVNSKLSRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGAY 130
>pdb|3SIL|A Chain A, Sialidase From Salmonella Typhimurium
Length = 379
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 83 RYFPEGINIYFENVGGKM---LDAVLLNMRIQGRITLCGMISQY-NNDKPEGVH 132
+ + + I IY + V K+ +D + IQGR T+ M+ ++ NNDK G +
Sbjct: 75 KTWNKKIAIYNDRVNSKLSRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGAY 128
>pdb|2B66|D Chain D, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf1, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400
pdb|2B9N|D Chain D, 50s Ribosomal Subunit From A Crystal Structure Of Release
Factor Rf2, Trnas And Mrna Bound To The Ribosome. This
File Contains The 50s Subunit From A Crystal Structure
Of Release Factor Rf1, Trnas And Mrna Bound To The
Ribosome And Is Described In Remark 400.
pdb|2B9P|D Chain D, 50s Ribosomal Subunit From A Crystal Structure Of The
Ribosome In Complex With Trnas And Mrna With A Stop
Codon In The A-Site. This File Contains The 50s Subunit
From A Crystal Structure Of The Ribosome In Complex With
Trnas And Mrna With A Stop Codon In The A-Site And Is
Described In Remark 400
Length = 173
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 17 KQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDK 55
K+G+YV V ASG V ++G+ VG VG+ G DK
Sbjct: 107 KEGKYVIVRLASGEVRMILGKCRATVGE--VGNGGRTDK 143
>pdb|1GIY|D Chain D, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1ML5|DD Chain d, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1YL3|D Chain D, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. Large Subunit. The Coordinates For The Small
Subunit Are In The Pdb Entry 1yl4
Length = 178
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 17 KQGEYVFVSAASGAVGQLVGQFAKLVGCYVVGSAGSKDK 55
K+G+YV V ASG V ++G+ VG VG+ G DK
Sbjct: 107 KEGKYVIVRLASGEVRMILGKCRATVGE--VGNGGRTDK 143
>pdb|1ATG|A Chain A, Azotobacter Vinelandii Periplasmic Molybdate-Binding
Protein
Length = 231
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 29 GAVGQLVGQFAKLVGCYVVGSAGSKDKV 56
G + QL GQFAK G VV S+GS V
Sbjct: 12 GTLEQLAGQFAKQTGHAVVISSGSSGPV 39
>pdb|3MZS|A Chain A, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|B Chain B, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|C Chain C, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|D Chain D, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
Length = 486
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 18/85 (21%)
Query: 70 NYKEEPDLDAAL--KRYFPEGINIYFENVGGKMLDAVLLNMR------IQGRITLCGMIS 121
+Y E D+ L RY+ + I + F+ G D V+LN I+ I L +S
Sbjct: 78 SYPERYDIPPWLAYHRYYQKPIGVLFKKSGTWKKDRVVLNTEVMAPEAIKNFIPLLNPVS 137
Query: 122 QYNNDKPEGVHNLTCLISKRIRMEG 146
Q + L+ KRI+ +G
Sbjct: 138 Q----------DFVSLLHKRIKQQG 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,348,683
Number of Sequences: 62578
Number of extensions: 271085
Number of successful extensions: 754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 51
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)