BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028524
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O31729|YLMG_BACSU Uncharacterized membrane protein YlmG OS=Bacillus subtilis (strain
168) GN=ylmG PE=3 SV=1
Length = 90
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 125 LSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVG 184
++ +SF I+ I MSW P LA + EP+L RK+IPP+A +DI+P+V +
Sbjct: 14 ITIYSFALIIYIFMSWVPSTRETAVGRFLA-SICEPYLEPFRKIIPPIAMLDISPIVAIL 72
Query: 185 LLNFLNEILVG 195
+L F L G
Sbjct: 73 VLRFATTGLWG 83
>sp|O78424|YCF19_GUITH Uncharacterized protein ycf19 OS=Guillardia theta GN=ycf19 PE=3
SV=1
Length = 91
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 135 RIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEIL 193
R+ ++W+P + P+ T+P+L R ++PPL G+DI+P++ LL + +I+
Sbjct: 26 RVSLTWFPNVNWYGQPFYSLSRITDPYLKMFRGIVPPLIGIDISPILGFILLQCIMQIV 84
>sp|Q9TM45|YCF19_CYACA Uncharacterized protein ycf19 OS=Cyanidium caldarium GN=ycf19 PE=3
SV=1
Length = 91
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%)
Query: 124 FLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWV 183
FL + L +LR+ + W+P I P+ ++P+L + P G+D +P++ +
Sbjct: 15 FLQIYIVLILLRMSLGWFPNINWYSQPFYSLSQLSDPYLNLFHGVFPSFLGIDFSPIIGI 74
Query: 184 GLLNFLNEIL 193
L++F+ E+L
Sbjct: 75 TLIDFIIELL 84
>sp|Q895H1|MIAB_CLOTE (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Clostridium tetani (strain Massachusetts / E88)
GN=miaB PE=3 SV=1
Length = 453
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 10 TFHVKGWSPPMPIKQSFGISERLRSSSRRNPRKGHQVSI--FSTCCFLEEADLLDIKLAP 67
TF ++ W M + S +S L++ +N +Q I F+TCC E A+L K+
Sbjct: 18 TFFIETWGCQMNEEDSEKLSGMLKNIGYKNAEDKNQADIIIFNTCCVRENAEL---KVYG 74
Query: 68 STAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADL 109
+ A G+ + N++ + + + + PF D+
Sbjct: 75 NLGALKGLKSKNPNLIIAVCGCMMQQEGMAEAIIKKYPFVDI 116
>sp|Q1XDD4|YCF19_PORYE Uncharacterized protein ycf19 OS=Porphyra yezoensis GN=ycf19 PE=3
SV=1
Length = 95
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 111 PATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIP 170
P T L +G I F + L +L++ ++W+P + P+ T+P+L R IP
Sbjct: 5 PGTLNLLLGSIANFSEIYLILILLKLSLAWFPTVNWYNEPFCSLNRITDPYLKLFRGSIP 64
Query: 171 PLAGVDITPVV 181
P+ G+D++P++
Sbjct: 65 PMFGMDMSPML 75
>sp|P51353|YCF19_PORPU Uncharacterized protein ycf19 OS=Porphyra purpurea GN=ycf19 PE=3
SV=1
Length = 95
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 111 PATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIP 170
P T L +G I F + L +L++ ++W+P + P+ T+P+L R IP
Sbjct: 5 PGTLNLLLGSIANFSEIYLILILLKLSLAWFPTVNWYNEPFCSLNRITDPYLKLFRGSIP 64
Query: 171 PLAGVDITPVV 181
P+ G+D++P++
Sbjct: 65 PMFGMDMSPML 75
>sp|P25254|Y392_PSEAE Uncharacterized protein PA0392 OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA0392
PE=3 SV=2
Length = 197
Score = 34.3 bits (77), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 118 IGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYV-LAYAPTEPFLLQTRKLIPPLAGVD 176
I + FL F F I+ +++SW P + P L EP L+ RKL+P L G+D
Sbjct: 105 IAVTSLFLKVFFFALIISVILSWVA--PGSYNPGAQLVNQICEPLLMPFRKLLPNLGGLD 162
Query: 177 ITPV 180
++P+
Sbjct: 163 LSPI 166
>sp|A5I2S3|MIAB_CLOBH (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC
13319 / Type A) GN=miaB PE=3 SV=1
Length = 450
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 11 FHVKGWSPPMPIKQSFGISERLRSSS--RRNPRKGHQVSIFSTCCFLEEADLLDIKLAPS 68
F ++ W M + S +S L+ R R+ V IF+TCC E A+L K+ +
Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAEL---KVYGN 72
Query: 69 TAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKL 116
G+ + N++ + + + PF D+ T L
Sbjct: 73 LGILKGLKSKNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNL 120
>sp|A7FUL1|MIAB_CLOB1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Clostridium botulinum (strain ATCC 19397 / Type A)
GN=miaB PE=3 SV=1
Length = 450
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 11 FHVKGWSPPMPIKQSFGISERLRSSS--RRNPRKGHQVSIFSTCCFLEEADLLDIKLAPS 68
F ++ W M + S +S L+ R R+ V IF+TCC E A+L K+ +
Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAEL---KVYGN 72
Query: 69 TAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKL 116
G+ + N++ + + + PF D+ T L
Sbjct: 73 LGILKGLKSKNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNL 120
>sp|Q3JEN8|HIS81_NITOC Histidinol-phosphate aminotransferase 1 OS=Nitrosococcus oceani
(strain ATCC 19707 / NCIMB 11848) GN=hisC1 PE=3 SV=1
Length = 370
Score = 33.9 bits (76), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 18 PPMPIKQSFGISERLRSSSRRNPRKGHQVSIFSTCCFLEEADLLDIKLAPSTAA-FSGIS 76
P I G S+ L ++R H+V I+S CF L+ I A A G
Sbjct: 87 PANQITLGNGSSDLLEFAARVLISPEHEV-IYSQYCFALYPLLIQILGAKGHAVPAKGFG 145
Query: 77 HDSVNIVKNIK-----LYVADTSDITSNFVHMLPFADLDPATAKLAIGIIGPFLSAFSFL 131
HD +VK + +Y+A+ ++ T ++H D A FL+A
Sbjct: 146 HDLEAMVKAVNSQTRLVYIANPNNPTGTWLHS------DELEA---------FLAALPEH 190
Query: 132 FILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKL--IPPLAGVDI 177
++ + ++Y + A++PY LA+ P L+ TR I LAG+ I
Sbjct: 191 VLVVLDEAYYEYVNEAQYPYSLAWMSRYPNLMITRTFSKIYGLAGLRI 238
>sp|A7GE46|MIAB_CLOBL (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Clostridium botulinum (strain Langeland / NCTC 10281
/ Type F) GN=miaB PE=3 SV=1
Length = 450
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 11 FHVKGWSPPMPIKQSFGISERLRSSS--RRNPRKGHQVSIFSTCCFLEEADLLDIKLAPS 68
F ++ W M + S +S L+ R R+ V IF+TCC E A+L K+ +
Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAEL---KVYGN 72
Query: 69 TAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKL 116
G+ + N++ + + + PF D+ T L
Sbjct: 73 LGILKGLKSKNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNL 120
>sp|B1KSA4|MIAB_CLOBM (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Clostridium botulinum (strain Loch Maree / Type A3)
GN=miaB PE=3 SV=1
Length = 450
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 11 FHVKGWSPPMPIKQSFGISERLRSSS--RRNPRKGHQVSIFSTCCFLEEADLLDIKLAPS 68
F ++ W M + S +S L+ R R+ V IF+TCC E A+L K+ +
Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAEL---KVYGN 72
Query: 69 TAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKL 116
G+ + N++ + + + PF D+ T L
Sbjct: 73 LGILKGLKSKNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNL 120
>sp|B1IM69|MIAB_CLOBK (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Clostridium botulinum (strain Okra / Type B1) GN=miaB
PE=3 SV=1
Length = 450
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 11 FHVKGWSPPMPIKQSFGISERLRSSS--RRNPRKGHQVSIFSTCCFLEEADLLDIKLAPS 68
F ++ W M + S +S L+ R R+ V IF+TCC E A+L K+ +
Sbjct: 16 FFIETWGCQMNEEDSEKLSGMLKKEGYIRTEERENADVIIFNTCCVRENAEL---KVYGN 72
Query: 69 TAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKL 116
G+ + N++ + + + PF D+ T L
Sbjct: 73 LGILKGLKSKNPNLIIAVTGCMMQQKGMAETIKKKFPFVDIIIGTHNL 120
>sp|P44097|Y1036_HAEIN Uncharacterized protein HI_1036 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1036 PE=3 SV=2
Length = 181
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 125 LSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVG 184
L+ F LFI V+SW+ + Y Y +EP L R+L+P L +D +P+V +
Sbjct: 104 LAIFYVLFI-GAVLSWFNR-GNNSISYAF-YQLSEPLLKPIRRLLPTLGMIDFSPMVVMF 160
Query: 185 LLNFLNEILVGPQGLLVLVS 204
+L FLN ++ G L +++
Sbjct: 161 ILLFLNNFMLDLLGGLWIIA 180
>sp|P28255|YCF19_GALSU Uncharacterized protein ycf19 OS=Galdieria sulphuraria GN=ycf19
PE=3 SV=1
Length = 98
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 115 KLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAG 174
K+ +G+I F + F +R+ ++W I PY++ T+P+L R +P + G
Sbjct: 11 KIILGVITEFCRIYLFALSIRVFLAWIVTINWYTQPYIVLKKLTDPYLNLFRGTLPLILG 70
Query: 175 VD 176
+D
Sbjct: 71 MD 72
>sp|Q9CIR9|ADD_LACLA Adenosine deaminase OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=add PE=3 SV=1
Length = 352
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 10/136 (7%)
Query: 42 KGHQVSIFSTCCFLEEADLLDIKLAPSTAAFSGI-------SHDSVNIVKNIKLYVADTS 94
KG V++ + C E ++LD ++ GI + + I K I L +A TS
Sbjct: 201 KGVNVTLHAGECPACEKNILDSIAMGASRIGHGIMTKNLSEAEQKMMIEKQIVLEMAPTS 260
Query: 95 DITSNFVHML---PFADLDPATAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPY 151
+ + V L PF +L + + +SA + + +WYP L+ F
Sbjct: 261 NFQTKAVTELAQYPFKELYDKGIHVTLNTDNRMVSATNLSKEYEKISAWYPDFSLSDFEK 320
Query: 152 VLAYAPTEPFLLQTRK 167
+ YA F+ Q K
Sbjct: 321 INHYAIDGAFIGQEEK 336
>sp|Q6ATV4|ACA2_ORYSJ Calcium-transporting ATPase 2, plasma membrane-type OS=Oryza sativa
subsp. japonica GN=Os03g0616400 PE=2 SV=1
Length = 1033
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 76 SHDSVNIVKNIKLYVADTSDITSNFVHMLPFADLDPATAKLAIGI 120
+HD V IV +I L V+ T TSN+ L F DLD K+ + +
Sbjct: 205 AHDGVGIVASILLVVSVTG--TSNYQQSLQFRDLDKEKRKILVQV 247
>sp|A8F9T1|ROCA_BACP2 1-pyrroline-5-carboxylate dehydrogenase OS=Bacillus pumilus (strain
SAFR-032) GN=rocA PE=3 SV=1
Length = 515
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 62 DIKLAP--STAAFSGISHDSVNIVKNI-KLYVADTSDITSN-FVHMLPFADLDPATAKLA 117
D+ + P A+F I+ D + + K +L TSD T F+H FADL+P + +
Sbjct: 356 DVYMGPVIDQASFDKIT-DYIEVGKQEGRLVTGGTSDDTEGYFIHPTVFADLEPTSRLMQ 414
Query: 118 IGIIGPFLSAFS 129
I GP L AFS
Sbjct: 415 EEIFGPVL-AFS 425
>sp|O65272|KEA2_ARATH K(+) efflux antiporter 2, chloroplastic OS=Arabidopsis thaliana
GN=KEA2 PE=1 SV=2
Length = 1174
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 121 IGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRK----LIPPLAGVD 176
I P+ LF + + MS PK+ LA FP ++ T LL + +I L G+
Sbjct: 836 IAPYRGLLLGLFFMTVGMSIDPKLLLANFPLIMG---TLGLLLVGKTILVVIIGKLFGIS 892
Query: 177 ITPVVWVGLL 186
I V VGLL
Sbjct: 893 IISAVRVGLL 902
>sp|Q2LR47|MURC_SYNAS UDP-N-acetylmuramate--L-alanine ligase OS=Syntrophus aciditrophicus
(strain SB) GN=murC PE=3 SV=1
Length = 480
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 14/104 (13%)
Query: 3 TSFQLANTFHVKGWSPPMPIKQSFGISERLRSSSRRNPRKGHQVSIFSTCCFLEEADLLD 62
T+ +A G P M I G S N R GH I + +E+D
Sbjct: 136 TTSMIATVMASGGLDPTMVIGGKLG-------SIGSNARMGHGEFIVAEA---DESDGSF 185
Query: 63 IKLAPSTAAFSGISHDSVNIVKNIKLYVADTSDITSNFVHMLPF 106
+KL+PS A + I + ++ + I+ D D F +++PF
Sbjct: 186 LKLSPSLAVITNIDREHLDFYRGIE----DIKDAFLQFANIVPF 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,224,816
Number of Sequences: 539616
Number of extensions: 2849977
Number of successful extensions: 6926
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6895
Number of HSP's gapped (non-prelim): 44
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)