Query 028524
Match_columns 208
No_of_seqs 123 out of 1112
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 12:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02325 YGGT: YGGT family; I 99.8 3.2E-19 6.9E-24 130.0 7.9 73 121-195 1-74 (75)
2 COG0762 Predicted integral mem 99.7 2.8E-17 6E-22 126.1 11.1 81 120-200 13-93 (96)
3 PF14494 DUF4436: Domain of un 41.0 1.4E+02 0.0029 27.1 7.5 76 113-192 168-247 (256)
4 PF02194 PXA: PXA domain; Int 30.8 1.5E+02 0.0033 23.9 5.7 65 123-190 6-70 (185)
5 PHA02845 hypothetical protein; 25.6 1.5E+02 0.0032 23.3 4.4 30 158-192 34-63 (91)
6 PRK05771 V-type ATP synthase s 24.5 1.3E+02 0.0029 29.8 5.0 37 160-196 324-365 (646)
7 TIGR02896 spore_III_AF stage I 23.6 1.6E+02 0.0035 23.2 4.5 47 120-166 3-54 (106)
8 PHA02688 ORF059 IMV protein VP 21.6 94 0.002 29.4 3.1 37 152-195 269-305 (323)
9 PF15202 Adipogenin: Adipogeni 21.4 1.9E+02 0.0042 22.0 4.2 38 169-206 6-43 (81)
10 PF05663 DUF809: Protein of un 20.1 98 0.0021 25.2 2.6 19 127-145 29-47 (138)
No 1
>PF02325 YGGT: YGGT family; InterPro: IPR003425 This family represents Ycf19. It is associated with phototrophic organisms and may therefore play a role in photosynthesis, despite its wider association with bacteria outside of the cyanobacteria. ; GO: 0016020 membrane
Probab=99.79 E-value=3.2e-19 Score=129.98 Aligned_cols=73 Identities=42% Similarity=0.883 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCchhH-HHHhhcchhHHHHhhhhCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 028524 121 IGPFLSAFSFLFILRIVMSWYPKIPLAKFPY-VLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVG 195 (208)
Q Consensus 121 I~~~L~IY~~lLLIR~ILSW~~~~~~n~~P~-q~L~kLTEPiL~PiRRiIPpiGgIDfSPLValilL~lL~~iLv~ 195 (208)
++.++++|.+++++|+++||++.+.+ ||. ++++++|||+++|+||++|+.||+|+||+++++++++++.++.+
T Consensus 1 l~~~~~~~~~~i~~r~ilsw~~~~~~--~~~~~~i~~~TeP~l~p~r~~ip~~g~iD~S~lv~~~~l~~l~~~l~~ 74 (75)
T PF02325_consen 1 LNTLLSIYIWLIILRFILSWFPANPY--NPFVQFIYRITEPILRPFRRIIPPIGGIDFSPLVALIVLQFLKIILVG 74 (75)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcccc--ChHHHHHHHHhhHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999764 455 99999999999999999999999999999999999999988765
No 2
>COG0762 Predicted integral membrane protein [Function unknown]
Probab=99.73 E-value=2.8e-17 Score=126.12 Aligned_cols=81 Identities=33% Similarity=0.625 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHhhcchhHHHHhhhhCCCCCCcchHHHHHHHHHHHHHHHHHhHHHH
Q 028524 120 IIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGL 199 (208)
Q Consensus 120 LI~~~L~IY~~lLLIR~ILSW~~~~~~n~~P~q~L~kLTEPiL~PiRRiIPpiGgIDfSPLValilL~lL~~iLv~~lgl 199 (208)
.+..++.+|.+.++++.+++|+++..+++...++++++|||+++|+||++|++||+|+||+++++++++++.++.+.++.
T Consensus 13 ~l~~~i~~~~~~~ii~~~lsw~~~~~~~~~i~~~l~~lteP~L~p~Rr~ip~lggiD~Spiv~iliL~~l~~~l~~~~~~ 92 (96)
T COG0762 13 VLLILIGVYIFLLLIRALLSWFPPAGETNPIGRLLAQLTEPLLRPFRRLIPPLGGIDFSPIVALLILQFLQFFLIRLLGL 92 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccCHHHHHHHHhhHhHHHHHHhCCCccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999998765555999999999999999999999999999999999999999998888774
Q ss_pred H
Q 028524 200 L 200 (208)
Q Consensus 200 l 200 (208)
.
T Consensus 93 ~ 93 (96)
T COG0762 93 I 93 (96)
T ss_pred H
Confidence 4
No 3
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=40.97 E-value=1.4e+02 Score=27.11 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHhhcchhHHHHhhhhCC---CCCC-cchHHHHHHHHHHH
Q 028524 113 TAKLAIGIIGPFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIP---PLAG-VDITPVVWVGLLNF 188 (208)
Q Consensus 113 ~m~~Li~LI~~~L~IY~~lLLIR~ILSW~~~~~~n~~P~q~L~kLTEPiL~PiRRiIP---piGg-IDfSPLValilL~l 188 (208)
.+..++.++.+.+....+..-+.. +...-.. ..|.-..+.-+=..+-|+|.++| |+|. +|+..++..+++..
T Consensus 168 ~F~~~i~~vm~~L~~~al~~ai~~---~~~rr~~-~~~~l~w~aA~LFAlp~lRN~lPGaPP~G~~iD~~~vlW~~i~l~ 243 (256)
T PF14494_consen 168 FFALFICLVMWALATLALFVAIQV---LRRRRKF-EPPMLTWMAAMLFALPPLRNILPGAPPIGSWIDFAGVLWVLIALV 243 (256)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHH---HhCcccc-ccchHHHHHHHHHhhhhHhccCCCCCCCcceEeeeehHHHHHHHH
Confidence 445555555666555544333332 2221111 12333444555566789999996 6774 99988777766665
Q ss_pred HHHH
Q 028524 189 LNEI 192 (208)
Q Consensus 189 L~~i 192 (208)
+-.+
T Consensus 244 ~~m~ 247 (256)
T PF14494_consen 244 ASMV 247 (256)
T ss_pred HHHH
Confidence 5444
No 4
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=30.79 E-value=1.5e+02 Score=23.87 Aligned_cols=65 Identities=26% Similarity=0.327 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCchhHHHHhhcchhHHHHhhhhCCCCCCcchHHHHHHHHHHHHH
Q 028524 123 PFLSAFSFLFILRIVMSWYPKIPLAKFPYVLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLN 190 (208)
Q Consensus 123 ~~L~IY~~lLLIR~ILSW~~~~~~n~~P~q~L~kLTEPiL~PiRRiIPpiGgIDfSPLValilL~lL~ 190 (208)
..++-+.=.++-.++.+|+.... .+| +|+..+..=+-.-++++.-+...+|+..+++-=++.++.
T Consensus 6 ~~l~~li~~I~rdfV~sWY~~Is--~d~-~F~~ei~~~l~~~~~~l~~R~~~vD~~~ll~~~l~~~l~ 70 (185)
T PF02194_consen 6 EALHELIDLILRDFVNSWYSKIS--PDP-EFPNEIRRILRHALRELSQRLSRVDLVKLLLDDLLPILT 70 (185)
T ss_pred HHHHHHHHHHHHHHHHhhhhccC--CcH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34444555567788999997665 444 444444433434444444445679999987655555543
No 5
>PHA02845 hypothetical protein; Provisional
Probab=25.58 E-value=1.5e+02 Score=23.33 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=20.5
Q ss_pred chhHHHHhhhhCCCCCCcchHHHHHHHHHHHHHHH
Q 028524 158 TEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEI 192 (208)
Q Consensus 158 TEPiL~PiRRiIPpiGgIDfSPLValilL~lL~~i 192 (208)
.-|+++|++|.+ +|+.-.+..+....++..
T Consensus 34 ~~~llRP~~RLl-----fDl~i~viVi~~~~iRlv 63 (91)
T PHA02845 34 HHYLFRPFIRLT-----IDLILLIIVMIFLMIRIL 63 (91)
T ss_pred ccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 568999999988 787766555544444433
No 6
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.51 E-value=1.3e+02 Score=29.83 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=29.6
Q ss_pred hHHHHhhhh-----CCCCCCcchHHHHHHHHHHHHHHHHHhH
Q 028524 160 PFLLQTRKL-----IPPLAGVDITPVVWVGLLNFLNEILVGP 196 (208)
Q Consensus 160 PiL~PiRRi-----IPpiGgIDfSPLValilL~lL~~iLv~~ 196 (208)
++.+|+..+ +|+.+-+|-+|+++++...+...++.+.
T Consensus 324 ~~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f~lfFGmM~gD~ 365 (646)
T PRK05771 324 KFIKPFESLTEMYSLPKYNEIDPTPFLAIFFPLFFGMMLGDA 365 (646)
T ss_pred chhhhHHHHHHHcCCCCCCCcCCccHHHHHHHHHHHHHHHhH
Confidence 457777776 5888999999999998888877776655
No 7
>TIGR02896 spore_III_AF stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment.
Probab=23.62 E-value=1.6e+02 Score=23.19 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCchhH-----HHHhhcchhHHHHhh
Q 028524 120 IIGPFLSAFSFLFILRIVMSWYPKIPLAKFPY-----VLAYAPTEPFLLQTR 166 (208)
Q Consensus 120 LI~~~L~IY~~lLLIR~ILSW~~~~~~n~~P~-----q~L~kLTEPiL~PiR 166 (208)
+-.|+-++..+++++-++...+|...+.+... -++..+.+|+++.++
T Consensus 3 l~~Wv~~i~~~~il~t~~~~llP~~~~kkYvr~v~Gl~Li~~il~Pi~~l~~ 54 (106)
T TIGR02896 3 LKEWVTNIIVLILLATILEMLLPNSSLKKYVKFVVGLILMVVILNPIIKLLT 54 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45788899999999999999999876533211 345556666666665
No 8
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=21.60 E-value=94 Score=29.39 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=26.8
Q ss_pred HHHhhcchhHHHHhhhhCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 028524 152 VLAYAPTEPFLLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVG 195 (208)
Q Consensus 152 q~L~kLTEPiL~PiRRiIPpiGgIDfSPLValilL~lL~~iLv~ 195 (208)
++.+.+|-|+...| |-+|...+-+++++.++-.++..
T Consensus 269 ~~~y~lttPLfSfF-------GlfDInv~gviiil~ii~l~IF~ 305 (323)
T PHA02688 269 GFYYFLTTPLFSFF-------GLFDINVIGVIIILFIIVLLIFD 305 (323)
T ss_pred chheeecchHHHhh-------ccchhHHHHHHHHHHHHHHHHhc
Confidence 56778888887766 66888888777777776665553
No 9
>PF15202 Adipogenin: Adipogenin
Probab=21.44 E-value=1.9e+02 Score=21.95 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=26.2
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 028524 169 IPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQQ 206 (208)
Q Consensus 169 IPpiGgIDfSPLValilL~lL~~iLv~~lgll~~~~~~ 206 (208)
+|-+..+-+|.++..+.+-+...+..-++-+=|++||.
T Consensus 6 vplvndltfsflvfwlclpv~lllfl~ivwlrfllsqd 43 (81)
T PF15202_consen 6 VPLVNDLTFSFLVFWLCLPVGLLLFLLIVWLRFLLSQD 43 (81)
T ss_pred cchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 45567788999998888776554444445456788885
No 10
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=20.08 E-value=98 Score=25.16 Aligned_cols=19 Identities=21% Similarity=0.681 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhccCCC
Q 028524 127 AFSFLFILRIVMSWYPKIP 145 (208)
Q Consensus 127 IY~~lLLIR~ILSW~~~~~ 145 (208)
+..+++++.+|+||+....
T Consensus 29 llayllmahiwlswfsnnq 47 (138)
T PF05663_consen 29 LLAYLLMAHIWLSWFSNNQ 47 (138)
T ss_pred HHHHHHHHHHHHHHHcCcH
Confidence 3456789999999998754
Done!