Query 028524
Match_columns 208
No_of_seqs 123 out of 1112
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 21:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1r_A Archaeal adhesion filam 30.7 67 0.0023 19.0 3.5 24 177-200 1-24 (26)
2 4ay9_A Glycoprotein hormones, 21.2 49 0.0017 24.9 2.1 15 42-56 21-35 (92)
3 1ku5_A HPHA, archaeal histon; 13.2 2E+02 0.0067 19.4 3.5 44 162-205 9-52 (70)
4 1t0p_B ICAM-3, intercellular a 11.7 58 0.002 23.9 0.4 20 40-59 15-34 (86)
5 1f2l_A Fractalkine; chemoattra 5.5 1.4E+02 0.0049 20.7 0.2 15 43-57 2-16 (76)
6 4ffu_A Oxidase; structural gen 4.1 3.5E+02 0.012 21.0 1.5 34 75-108 5-38 (176)
7 4efo_A Serine/threonine-protei 4.1 1.6E+02 0.0053 21.8 -0.5 44 52-95 1-48 (94)
8 1xu0_A Prion protein, XLPRP; a 3.2 2.6E+02 0.0087 22.2 0.0 13 12-24 4-16 (130)
9 2eq8_C Pyruvate dehydrogenase 3.1 6E+02 0.021 14.8 1.7 20 55-74 7-26 (40)
10 1stm_A SPMV, satellite panicum 3.0 4.6E+02 0.016 20.9 1.3 23 34-56 5-30 (157)
No 1
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=30.67 E-value=67 Score=19.01 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHH
Q 028524 177 ITPVVWVGLLNFLNEILVGPQGLL 200 (208)
Q Consensus 177 fSPLValilL~lL~~iLv~~lgll 200 (208)
.||+++.++|.++...-...+.+|
T Consensus 1 ispiVA~~lLIviav~aaVllylW 24 (26)
T 3j1r_A 1 VSPVIATLLLILIAVAAAVLLYTW 24 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 378888887777655444444444
No 2
>4ay9_A Glycoprotein hormones, alpha polypeptide; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1dz7_A 1e9j_A* 1fl7_A* 1hcn_A* 1hd4_A* 1xwd_A* 1hrp_A* 1qfw_A*
Probab=21.15 E-value=49 Score=24.87 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=12.8
Q ss_pred CCCcceeeeceeeeh
Q 028524 42 KGHQVSIFSTCCFLE 56 (208)
Q Consensus 42 ~~~~~~~~~~~~~~~ 56 (208)
-|.|+.||..|||.+
T Consensus 21 ~~~PiyQC~GCCFSr 35 (92)
T 4ay9_A 21 PGAPILQCMGCCFSR 35 (92)
T ss_dssp TTBCCEEEEEEEEEE
T ss_pred CCCceEEecceeecc
Confidence 378899999999973
No 3
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=13.25 E-value=2e+02 Score=19.35 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=34.3
Q ss_pred HHHhhhhCCCCCCcchHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 028524 162 LLQTRKLIPPLAGVDITPVVWVGLLNFLNEILVGPQGLLVLVSQ 205 (208)
Q Consensus 162 L~PiRRiIPpiGgIDfSPLValilL~lL~~iLv~~lgll~~~~~ 205 (208)
..|++|++-..|.-.+|+-+..-+..++..++...+.-....++
T Consensus 9 ~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~ 52 (70)
T 1ku5_A 9 IAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFAR 52 (70)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777666888999999999999999998888776655554
No 4
>1t0p_B ICAM-3, intercellular adhesion molecule-3, ICAM-R, CDW50, CD50 antigen; rossmann fold, IG-super family domain, immune system; HET: NAG; 1.66A {Homo sapiens}
Probab=11.72 E-value=58 Score=23.93 Aligned_cols=20 Identities=25% Similarity=0.097 Sum_probs=16.2
Q ss_pred CCCCCcceeeeceeeehhhh
Q 028524 40 PRKGHQVSIFSTCCFLEEAD 59 (208)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~ 59 (208)
|.++|-.+.|||.|...++.
T Consensus 15 ~~G~S~~vNCStsC~~p~~~ 34 (86)
T 1t0p_B 15 SAGGSLFVNCSTDCPSSEKI 34 (86)
T ss_dssp CSSCEEEEEEEECCTTCEEE
T ss_pred cCCCcEEEEEeCCCCCCCcc
Confidence 67889999999999765543
No 5
>1f2l_A Fractalkine; chemoattractant, neurotactin, cytokine; 2.00A {Homo sapiens} SCOP: d.9.1.1 PDB: 3ona_B 1b2t_A
Probab=5.51 E-value=1.4e+02 Score=20.69 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=9.9
Q ss_pred CCcceeeeceeeehh
Q 028524 43 GHQVSIFSTCCFLEE 57 (208)
Q Consensus 43 ~~~~~~~~~~~~~~~ 57 (208)
.+++..|+.||+...
T Consensus 2 ~~~~~k~~~CC~~~~ 16 (76)
T 1f2l_A 2 HHGVTKCNITCSKMT 16 (76)
T ss_dssp ---CCCCCEEECSCC
T ss_pred CCccCCcCCcCcccC
Confidence 467889999998754
No 6
>4ffu_A Oxidase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc, PS biology; HET: MSE; 1.80A {Sinorhizobium meliloti}
Probab=4.08 E-value=3.5e+02 Score=20.98 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=13.2
Q ss_pred cccchhhhhhhhcccccccCCccccchhccccCC
Q 028524 75 ISHDSVNIVKNIKLYVADTSDITSNFVHMLPFAD 108 (208)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (208)
-+++|-.|++++|++.+++-++....+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~fedl~vG~ 38 (176)
T 4ffu_A 5 HHHSSGVDLGTENLYFQSMMSEQTIYYEDYEQGH 38 (176)
T ss_dssp ------------CTTEEECCSBCCCCGGGSCTTC
T ss_pred cccccccccccEEEEhhhhHhhcCCcHhHcCCCC
Confidence 3577888999999999987554334444444444
No 7
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=4.06 E-value=1.6e+02 Score=21.79 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=32.8
Q ss_pred eeeehhhhccccccc----cccccccccccchhhhhhhhcccccccCC
Q 028524 52 CCFLEEADLLDIKLA----PSTAAFSGISHDSVNIVKNIKLYVADTSD 95 (208)
Q Consensus 52 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (208)
.||.++.+-++.++. +..|..=...+..++-+.++|-.|.+-..
T Consensus 1 ~~F~e~~dIL~rkvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg 48 (94)
T 4efo_A 1 GPLGSTSDILHRMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK 48 (94)
T ss_dssp -CCCGGGCGGGEEEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC
T ss_pred CchHHHHHHHhceeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhC
Confidence 499999999998876 67777666777777778888777765433
No 8
>1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane protein; NMR {Xenopus laevis} SCOP: d.6.1.1
Probab=3.24 E-value=2.6e+02 Score=22.18 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=0.0
Q ss_pred cccccCCCCCccc
Q 028524 12 HVKGWSPPMPIKQ 24 (208)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (208)
+++.|+|+-+|+.
T Consensus 4 ~~~~wkp~K~ktn 16 (130)
T 1xu0_A 4 YNKQWKPPKSKTN 16 (130)
T ss_dssp -------------
T ss_pred CCCCCCCCCCCCC
Confidence 5688888877653
No 9
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=3.13 E-value=6e+02 Score=14.75 Aligned_cols=20 Identities=15% Similarity=-0.029 Sum_probs=12.9
Q ss_pred ehhhhccccccccccccccc
Q 028524 55 LEEADLLDIKLAPSTAAFSG 74 (208)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~ 74 (208)
+.+|...|+++....+.-+.
T Consensus 7 r~la~e~gidl~~v~gtG~~ 26 (40)
T 2eq8_C 7 RRLARELGVDLTRLRGTGLA 26 (40)
T ss_dssp HHHHHHHTCCGGGCCCCSTT
T ss_pred HHHHHHhCCChhhcCCCCCC
Confidence 34677778887766555544
No 10
>1stm_A SPMV, satellite panicum mosaic virus; icosahedral virus; 1.90A {Panicum mosaic satellite virus} SCOP: b.121.7.1
Probab=3.00 E-value=4.6e+02 Score=20.88 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=6.3
Q ss_pred cccCCCCCCCCcc---eeeeceeeeh
Q 028524 34 SSSRRNPRKGHQV---SIFSTCCFLE 56 (208)
Q Consensus 34 ~~~~~~~~~~~~~---~~~~~~~~~~ 56 (208)
.+.|||.+.+|.+ .+-..-||.+
T Consensus 5 rsrr~nrr~~sr~aats~~~d~~y~s 30 (157)
T 1stm_A 5 RSRRSNRRAGSRAAATSLVYDTCYVT 30 (157)
T ss_dssp ------------CCCCEEEEEEEEEC
T ss_pred chhhhhhhhccccchhhheeeeEEEE
Confidence 3456777777765 5555666653
Done!