Query 028524
Match_columns 208
No_of_seqs 123 out of 1112
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 21:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028524.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028524hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcna_ g.17.1.4 (A:) Glycopro 18.5 29 0.0021 24.0 2.1 15 42-56 17-31 (85)
2 d1zxqa2 b.1.1.4 (A:1-86) Inter 14.9 18 0.0013 24.9 0.2 20 40-59 15-34 (86)
3 d1iama2 b.1.1.4 (A:1-82) Inter 10.2 27 0.002 23.8 -0.0 24 40-65 12-35 (82)
4 d1gpma1 c.26.2.1 (A:208-404) G 6.7 96 0.007 20.9 1.7 21 166-187 21-42 (197)
5 d1xnga1 c.26.2.1 (A:3-257) NH3 5.8 1.2E+02 0.0088 23.1 1.9 35 152-187 5-45 (255)
6 d1gg4a3 c.98.1.1 (A:1-98) UDP- 4.6 1.2E+02 0.0085 20.0 1.0 27 56-82 8-34 (98)
7 d1wxia1 c.26.2.1 (A:2-275) NH3 4.1 1.8E+02 0.013 22.7 1.9 41 149-190 17-64 (274)
8 d1ea0a2 c.1.4.1 (A:423-1193) A 3.9 33 0.0024 32.0 -3.2 16 152-167 79-94 (771)
9 d2dasa1 g.39.1.17 (A:8-56) Zin 3.6 96 0.007 19.2 -0.2 16 41-56 32-47 (49)
10 d1kqpa_ c.26.2.1 (A:) NH3-depe 3.5 4.3E+02 0.031 20.2 3.8 40 149-189 17-62 (271)
No 1
>d1hcna_ g.17.1.4 (A:) Glycoprotein hormones alpha chain (Gonadotropin A, Follitropin alpha) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.55 E-value=29 Score=24.01 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=12.9
Q ss_pred CCCcceeeeceeeeh
Q 028524 42 KGHQVSIFSTCCFLE 56 (208)
Q Consensus 42 ~~~~~~~~~~~~~~~ 56 (208)
.|.|+.||..|||.+
T Consensus 17 ~~~PiyQC~GCCFSr 31 (85)
T d1hcna_ 17 PGAPILQCMGCCFSR 31 (85)
T ss_dssp TTBCCEEEEEEEEEE
T ss_pred CCCceEEecceeccc
Confidence 468999999999973
No 2
>d1zxqa2 b.1.1.4 (A:1-86) Intercellular adhesion molecule-2, ICAM-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.92 E-value=18 Score=24.91 Aligned_cols=20 Identities=30% Similarity=0.242 Sum_probs=16.5
Q ss_pred CCCCCcceeeeceeeehhhh
Q 028524 40 PRKGHQVSIFSTCCFLEEAD 59 (208)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~ 59 (208)
|+++|..+.|||.|....+.
T Consensus 15 ~~GgS~~vNCStsC~~p~~~ 34 (86)
T d1zxqa2 15 EPKGSLEVNCSTTCNQPEVG 34 (86)
T ss_dssp CTTEEEEEEEEESCSSCSEE
T ss_pred cCCCcEEEEEeccCCCCCcc
Confidence 67889999999999776554
No 3
>d1iama2 b.1.1.4 (A:1-82) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.20 E-value=27 Score=23.84 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=17.3
Q ss_pred CCCCCcceeeeceeeehhhhcccccc
Q 028524 40 PRKGHQVSIFSTCCFLEEADLLDIKL 65 (208)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (208)
|+++|....|||.|.. ....|++-
T Consensus 12 ~~GgS~~VNCStsC~~--p~~~gLET 35 (82)
T d1iama2 12 PRGGSVLVTCSTSCDQ--PKLLGIET 35 (82)
T ss_dssp ETTEEEEEEEEECSSS--CSEEEEEC
T ss_pred CCCCcEEEEeeCCCCC--CCcceEEE
Confidence 5788899999999964 34445544
No 4
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=6.73 E-value=96 Score=20.91 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=12.6
Q ss_pred hhhCCCC-CCcchHHHHHHHHHH
Q 028524 166 RKLIPPL-AGVDITPVVWVGLLN 187 (208)
Q Consensus 166 RRiIPpi-GgIDfSPLValilL~ 187 (208)
+|++=-+ ||+| |.+++.++..
T Consensus 21 ~kvvV~lSGGVD-Ssv~a~ll~~ 42 (197)
T d1gpma1 21 DKVILGLSGGVD-SSVTAMLLHR 42 (197)
T ss_dssp CEEEEECCSSHH-HHHHHHHHHH
T ss_pred CcEEEEcCCCHH-HHHHHHHHHH
Confidence 5666444 9999 5555555444
No 5
>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]}
Probab=5.75 E-value=1.2e+02 Score=23.14 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=20.0
Q ss_pred HHHhhcchhHHHHhhh-----hCCCC-CCcchHHHHHHHHHH
Q 028524 152 VLAYAPTEPFLLQTRK-----LIPPL-AGVDITPVVWVGLLN 187 (208)
Q Consensus 152 q~L~kLTEPiL~PiRR-----iIPpi-GgIDfSPLValilL~ 187 (208)
+++.++++.+=.-+++ ++=.+ ||+| |.+++.++-.
T Consensus 5 ~~~~~l~~~l~~~~~~~G~k~vvvglSGGVD-Ssv~A~L~~~ 45 (255)
T d1xnga1 5 KLIVYLCDFLEKEVQKRGFKKVVYGLSGGLD-SAVVGVLCQK 45 (255)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEECCSSHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEECCCCHH-HHHHHHHHHH
Confidence 5566777666555543 22222 8999 5556655443
No 6
>d1gg4a3 c.98.1.1 (A:1-98) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}
Probab=4.63 E-value=1.2e+02 Score=20.02 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=17.5
Q ss_pred hhhhccccccccccccccccccchhhh
Q 028524 56 EEADLLDIKLAPSTAAFSGISHDSVNI 82 (208)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
+++..+|-++......+.+++.||-++
T Consensus 8 ~i~~~~~g~l~~~d~~i~~is~DSR~i 34 (98)
T d1gg4a3 8 QLTDILNGELQGADITLDAVTTDTRKL 34 (98)
T ss_dssp HHHHHTTEEEESCCCEESCEESCGGGC
T ss_pred HHHHHHCCEEECCCeeEEEEEecCCcC
Confidence 345556666654455677788888776
No 7
>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]}
Probab=4.07 E-value=1.8e+02 Score=22.69 Aligned_cols=41 Identities=10% Similarity=-0.070 Sum_probs=26.2
Q ss_pred hhHHHHhhcchhHHHHhhh------hCCCC-CCcchHHHHHHHHHHHHH
Q 028524 149 FPYVLAYAPTEPFLLQTRK------LIPPL-AGVDITPVVWVGLLNFLN 190 (208)
Q Consensus 149 ~P~q~L~kLTEPiL~PiRR------iIPpi-GgIDfSPLValilL~lL~ 190 (208)
+|.+.+.++++.+=..+++ ++=.+ ||+| |.+++.++...+.
T Consensus 17 ~~ee~i~~~v~~L~dy~~k~~~~k~vVvGlSGGID-Sav~A~L~~~Alg 64 (274)
T d1wxia1 17 NAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQD-STLAGKLCQMAIN 64 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHH-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEECCCCHH-HHHHHHHHHHHHH
Confidence 4556778888876666654 22112 8999 7777766665543
No 8
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}
Probab=3.94 E-value=33 Score=31.97 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=14.7
Q ss_pred HHHhhcchhHHHHhhh
Q 028524 152 VLAYAPTEPFLLQTRK 167 (208)
Q Consensus 152 q~L~kLTEPiL~PiRR 167 (208)
|...|+|||.+.|+|.
T Consensus 79 Q~FAQVTNPPID~iRE 94 (771)
T d1ea0a2 79 QNFSQVTNPPIDSLRE 94 (771)
T ss_dssp ECCCCSSSCCCCTTTT
T ss_pred cCccccCCCCccHHHh
Confidence 7788999999999996
No 9
>d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.55 E-value=96 Score=19.23 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=12.8
Q ss_pred CCCCcceeeeceeeeh
Q 028524 41 RKGHQVSIFSTCCFLE 56 (208)
Q Consensus 41 ~~~~~~~~~~~~~~~~ 56 (208)
++|+.-|-|||.|-.+
T Consensus 32 rkGs~~LFCSt~Cl~~ 47 (49)
T d2dasa1 32 RKGSAHLFCSTTCLSS 47 (49)
T ss_dssp CTTCCCEESSHHHHHH
T ss_pred hCCCcceeEcchhhcc
Confidence 5788899999999543
No 10
>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=3.50 E-value=4.3e+02 Score=20.20 Aligned_cols=40 Identities=10% Similarity=-0.101 Sum_probs=24.2
Q ss_pred hhHHHHhhcchhHHHHhhh-----hC-CCCCCcchHHHHHHHHHHHH
Q 028524 149 FPYVLAYAPTEPFLLQTRK-----LI-PPLAGVDITPVVWVGLLNFL 189 (208)
Q Consensus 149 ~P~q~L~kLTEPiL~PiRR-----iI-PpiGgIDfSPLValilL~lL 189 (208)
.|.+.+.++++.+=..+|| ++ .--||+| |.+++.++...+
T Consensus 17 d~~e~i~~~v~~lrdy~~ksg~~gvvvglSGGID-SAv~a~L~~~A~ 62 (271)
T d1kqpa_ 17 DPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQD-STLAGRLAQLAV 62 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHH-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCeEEEECCCCHH-HHHHHHHHHHHH
Confidence 4556677777776666655 22 2238999 556665544444
Done!