BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028525
(208 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQ6|A Chain A, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1XQ6|B Chain B, X-ray Structure Of Gene Product From Arabidopsis Thaliana
At5g02240
pdb|1YBM|A Chain A, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|1YBM|B Chain B, X-Ray Structure Of Selenomethionyl Gene Product From
Arabidopsis Thaliana At5g02240 In Space Group P21212
pdb|2Q46|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q46|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g02240
pdb|2Q4B|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
pdb|2Q4B|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Selenomethionyl Gene Product From Arabidopsis Thaliana
At5g02240 In Space Group P21212
Length = 253
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 8/135 (5%)
Query: 79 NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVL 138
+A + GV+H++++ + + L GN + E L SG PYTIIR G L
Sbjct: 118 DAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGL 177
Query: 139 QNTPGGKQ----GFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVS- 193
+ GG + G E ++ + D A +C++AL F++ + E S
Sbjct: 178 LDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTST 237
Query: 194 ---DWKKCFSRLMEK 205
D+K FS++ +
Sbjct: 238 PTKDFKALFSQVTSR 252
>pdb|3E8X|A Chain A, Putative Nad-Dependent EpimeraseDEHYDRATASE FROM BACILLUS
HALODURANS
Length = 236
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 112 ARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVE 171
A++LA+ + L S + YTI+R G L N + S+++ D A + E
Sbjct: 150 AKRLADDE---LKRSSLDYTIVRPGPLSNEESTGKVTVSPHFSEITRSITRHDVAKVIAE 206
Query: 172 ALESIPQTGLIFEVVNGEEKVS 193
++ G FEV+NG+ ++
Sbjct: 207 LVDQQHTIGKTFEVLNGDTPIA 228
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent Quinone
Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 34/141 (24%)
Query: 15 RMVILSLI--VKRTRIKALVKD--KRNAMESFGTYVESMAGDASNKKFLKTALRGVRSII 70
VI SL+ V ++I A+V++ K A+ + G V D ++ L +AL+GV ++
Sbjct: 13 HYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQ--ADYGDEAALTSALQGVEKLL 70
Query: 71 ----------CPSEGFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDE 120
P + NA GV+ + S L+ + L DE
Sbjct: 71 LISSSEVGQRAPQHRNVINAAKAAGVKFIAYTS-------------LLHADTSPLGLADE 117
Query: 121 S-----MLMASGIPYTIIRTG 136
ML SGI YT++R G
Sbjct: 118 HIETEKMLADSGIVYTLLRNG 138
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 94 QLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNTP-----GGKQGF 148
Q VYRG G + A+ KG+ + ++ L+ GI + G L +T G + G
Sbjct: 408 QFKVYRGMGSVGAMEKGSKDRYFQEGNKKLVPEGIEGRVPYKGPLADTVHQLVGGLRAGM 467
Query: 149 QFEEGCAANG-SLSKEDAAFICVEA---LESIPQ 178
+ C A +E+A FI + LES P
Sbjct: 468 GY---CGAQDLEFLRENAQFIRMSGAGLLESHPH 498
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 94 QLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVLQNT 141
Q VYRG G + A KG+ + ++ L+ GI + G L +T
Sbjct: 408 QFKVYRGXGSVGAXEKGSKDRYFQEGNKKLVPEGIEGRVPYKGPLADT 455
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,315,079
Number of Sequences: 62578
Number of extensions: 191899
Number of successful extensions: 373
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 8
length of query: 208
length of database: 14,973,337
effective HSP length: 94
effective length of query: 114
effective length of database: 9,091,005
effective search space: 1036374570
effective search space used: 1036374570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)