BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028525
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94EG6|Y5224_ARATH Uncharacterized protein At5g02240 OS=Arabidopsis thaliana
GN=At5g02240 PE=1 SV=1
Length = 253
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 8/135 (5%)
Query: 79 NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVL 138
+A + GV+H++++ + + L GN + E L SG PYTIIR G L
Sbjct: 118 DAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGL 177
Query: 139 QNTPGGKQ----GFQFEEGCAANGSLSKEDAAFICVEALESIPQTGLIFEVVNGEEKVS- 193
+ GG + G E ++ + D A +C++AL F++ + E S
Sbjct: 178 LDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTST 237
Query: 194 ---DWKKCFSRLMEK 205
D+K FS++ +
Sbjct: 238 PTKDFKALFSQVTSR 252
>sp|O80934|Y2766_ARATH Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis
thaliana GN=At2g37660 PE=1 SV=2
Length = 325
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 79 NAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTGVL 138
+A GV+ ++L+ + + + ++ N + E L SGIPYTIIR G L
Sbjct: 190 DAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGL 249
Query: 139 QNTPGGKQ----GFQFEEGCAANGSLSKEDAAFICVEALE 174
Q+ GG + G E ++++ D A +CV+AL+
Sbjct: 250 QDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQ 289
>sp|P49534|YCF39_ODOSI Uncharacterized protein ycf39 OS=Odontella sinensis GN=ycf39 PE=3
SV=1
Length = 319
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 15 RMVILSLIVKRTRIKALVKDKR--NAMESFGTYVESMAGDASNKKFLKTALRGVRSIICP 72
R V+L + K +++ LV++ R N ++ +G E + GD S + + L+G+ ++I
Sbjct: 14 RQVVLQALTKGYQVRCLVRNFRKANFLKEWGA--ELIYGDLSRPETIPPCLQGITAVIDT 71
Query: 73 SEGFISNAGSLKGVQH-----VILLSQLS-----VYRGSGGIQALMKGNARKLAEQDESM 122
S S+ +LK V +I +Q + V+ S ++ + ++ E+
Sbjct: 72 STSRPSDLDTLKQVDWDGKCALIEAAQAANVKHFVFCSSQNVEQFLNIPLMEMKFGIETK 131
Query: 123 LMASGIPYTIIRTG-------------VLQNTPGGKQGFQFEEGCAANGSLSKEDAAFIC 169
L S IPYT+ R VL+N P E C + + +D A C
Sbjct: 132 LQQSNIPYTVFRLAGFYQGLIEQYAIPVLENLPILVTN---ENTCVS--YMDTQDIAKFC 186
Query: 170 VEALESIPQT 179
+ +L+ +P+T
Sbjct: 187 LRSLQ-LPET 195
>sp|Q8H124|Y2446_ARATH Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis
thaliana GN=At2g34460 PE=1 SV=1
Length = 280
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 118 QDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIP 177
Q E + SGI YTI+R G L+N P E GS+S++ A + VEAL
Sbjct: 192 QAEKYIKKSGINYTIVRPGGLKNDPPTGNVVMEPEDTLYEGSISRDLVAEVAVEALLQEE 251
Query: 178 QTGLIFEVV-NGEEKVSDWKKCFSRL 202
+ + E+V E +K F+ +
Sbjct: 252 SSFKVVEIVARAEAPKRSYKDLFASV 277
>sp|O07609|YHFK_BACSU Uncharacterized sugar epimerase YhfK OS=Bacillus subtilis (strain
168) GN=yhfK PE=2 SV=1
Length = 214
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 120 ESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQT 179
+ +L ASG+ YTIIR G L+N PG G G +S++D A + +L+
Sbjct: 137 DKILEASGLTYTIIRPGGLRNEPG--TGTVSAAKDLERGFISRDDVAKTVIASLDEKNTE 194
Query: 180 GLIFEVVNGEEKVSD 194
F++ G+ +++
Sbjct: 195 NRAFDLTEGDTPIAE 209
>sp|Q8SKU2|TIC62_PEA Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2
Length = 534
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 79 NAGSLKGVQHVILLSQLSVYRG--SGGIQALMKGNARKLAEQDESMLMASGIPYTIIRTG 136
+A ++ V H IL++ L + I L G + E L+ASGIPYTI+R
Sbjct: 203 DAATVAKVNHFILVTSLGTNKFGLPAAILNLFWG-VLIWKRKAEEALLASGIPYTIVR-- 259
Query: 137 VLQNTPGGKQGFQFEEGCAANGSLSKEDAAF 167
PGG + N +LS ED F
Sbjct: 260 -----PGGMERPTDAYKETHNVTLSTEDTLF 285
>sp|B5XME6|AROB_STRPZ 3-dehydroquinate synthase OS=Streptococcus pyogenes serotype M49
(strain NZ131) GN=aroB PE=3 SV=1
Length = 357
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 127 GIPYTIIRTGVL---QNTPGGKQGFQFEEGCAANGSLSKEDAAFICVEALESIPQ 178
GIPY I T +L ++ GGK G F+ GS+ +A I LE++PQ
Sbjct: 120 GIPYIQIPTTLLSQVDSSIGGKVGVHFKSLTNMIGSIYPPEAIIISTTFLETLPQ 174
>sp|O64173|NRDEB_BPSPB Ribonucleoside-diphosphate reductase nrdEB subunit alpha
OS=Bacillus phage SPbeta GN=bnrdE PE=3 SV=1
Length = 1084
Score = 30.8 bits (68), Expect = 7.6, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 21/89 (23%)
Query: 109 KGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFI 168
KGNARKL EQ + SG PY + V + P N +SK + +
Sbjct: 335 KGNARKLLEQLAILRSESGYPYIMFADNVNKVHP--------------NEHISKVKFSNL 380
Query: 169 CVEALESIPQTGLIFEVVNGEEKVSDWKK 197
CV +T L+ E NG EK +D K
Sbjct: 381 CVTG-----ETLLLTE--NGYEKAADLYK 402
>sp|O31875|NRDEB_BACSU Ribonucleoside-diphosphate reductase NrdEB subunit alpha
OS=Bacillus subtilis (strain 168) GN=nrdEB PE=3 SV=2
Length = 1084
Score = 30.8 bits (68), Expect = 7.6, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 21/89 (23%)
Query: 109 KGNARKLAEQDESMLMASGIPYTIIRTGVLQNTPGGKQGFQFEEGCAANGSLSKEDAAFI 168
KGNARKL EQ + SG PY + V + P N +SK + +
Sbjct: 335 KGNARKLLEQLAILRSESGYPYIMFADNVNKVHP--------------NEHISKVKFSNL 380
Query: 169 CVEALESIPQTGLIFEVVNGEEKVSDWKK 197
CV +T L+ E NG EK +D K
Sbjct: 381 CVTG-----ETLLLTE--NGYEKAADLYK 402
>sp|P39315|QOR2_ECOLI Quinone oxidoreductase 2 OS=Escherichia coli (strain K12) GN=qorB
PE=1 SV=1
Length = 286
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 34/141 (24%)
Query: 15 RMVILSLI--VKRTRIKALVKD--KRNAMESFGTYVESMAGDASNKKFLKTALRGVRSII 70
VI SL+ V ++I A+V++ K A+ + G V D ++ L +AL+GV ++
Sbjct: 13 HYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQ--ADYGDEAALTSALQGVEKLL 70
Query: 71 ----------CPSEGFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAEQDE 120
P + NA GV+ + S L+ + L DE
Sbjct: 71 LISSSEVGQRAPQHRNVINAAKAAGVKFIAYTS-------------LLHADTSPLGLADE 117
Query: 121 S-----MLMASGIPYTIIRTG 136
ML SGI YT++R G
Sbjct: 118 HIETEKMLADSGIVYTLLRNG 138
>sp|Q2TAC6|KIF19_HUMAN Kinesin-like protein KIF19 OS=Homo sapiens GN=KIF19 PE=2 SV=2
Length = 998
Score = 30.4 bits (67), Expect = 10.0, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 66 VRSIICPSEGFISNAGSLKGVQHVILLSQLSVYRGSGGIQALMKGNARKLAE 117
+R ++ PS G++ KGV V ++++S +Q LMKGN ++ E
Sbjct: 158 IRDLLNPSLGYLELREDSKGVIQVAGITEVSTINAKEIMQLLMKGNRQRTQE 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,701,999
Number of Sequences: 539616
Number of extensions: 2587222
Number of successful extensions: 6233
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 6220
Number of HSP's gapped (non-prelim): 28
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)