Query 028526
Match_columns 208
No_of_seqs 253 out of 1340
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 21:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 9E-21 3.1E-25 136.7 7.5 64 143-206 14-77 (80)
2 2cra_A Homeobox protein HOX-B1 99.8 9.6E-21 3.3E-25 133.2 6.9 65 143-207 4-68 (70)
3 2kt0_A Nanog, homeobox protein 99.8 7.6E-21 2.6E-25 137.9 6.5 65 143-207 19-83 (84)
4 2vi6_A Homeobox protein nanog; 99.8 8.2E-21 2.8E-25 130.5 5.5 61 145-205 2-62 (62)
5 2da3_A Alpha-fetoprotein enhan 99.8 1E-20 3.5E-25 135.8 6.2 64 143-206 14-77 (80)
6 2dmu_A Homeobox protein goosec 99.8 1.4E-20 4.8E-25 132.2 6.6 65 143-207 4-68 (70)
7 2da2_A Alpha-fetoprotein enhan 99.8 1.5E-20 5.3E-25 131.9 6.8 65 143-207 4-68 (70)
8 2da1_A Alpha-fetoprotein enhan 99.8 1.1E-20 3.8E-25 132.6 5.6 65 143-207 4-68 (70)
9 2dms_A Homeobox protein OTX2; 99.8 1.9E-20 6.6E-25 134.8 6.6 65 143-207 4-68 (80)
10 2djn_A Homeobox protein DLX-5; 99.8 2.3E-20 8E-25 131.2 6.5 64 143-206 4-67 (70)
11 2h1k_A IPF-1, pancreatic and d 99.8 1.5E-20 5.2E-25 129.6 5.3 61 145-205 2-62 (63)
12 1nk2_P Homeobox protein VND; h 99.8 2.3E-20 8E-25 133.6 6.4 65 143-207 6-70 (77)
13 1wh5_A ZF-HD homeobox family p 99.8 3E-20 1E-24 134.5 6.8 61 143-203 14-78 (80)
14 2dmq_A LIM/homeobox protein LH 99.8 2.4E-20 8.3E-25 134.1 6.3 64 144-207 5-68 (80)
15 2cue_A Paired box protein PAX6 99.8 2.2E-20 7.4E-25 134.7 5.9 64 143-206 4-67 (80)
16 2e1o_A Homeobox protein PRH; D 99.8 4E-20 1.4E-24 130.0 6.5 63 144-206 5-67 (70)
17 1puf_A HOX-1.7, homeobox prote 99.8 5.2E-20 1.8E-24 131.8 6.6 64 143-206 10-73 (77)
18 2m0c_A Homeobox protein arista 99.8 6.9E-20 2.4E-24 129.8 7.0 65 143-207 6-70 (75)
19 1bw5_A ISL-1HD, insulin gene e 99.8 5.3E-20 1.8E-24 127.9 5.9 62 145-206 2-63 (66)
20 2l7z_A Homeobox protein HOX-A1 99.8 9.3E-20 3.2E-24 129.3 6.9 64 144-207 5-68 (73)
21 2hdd_A Protein (engrailed home 99.8 5.1E-20 1.8E-24 126.1 5.1 59 146-204 3-61 (61)
22 1fjl_A Paired protein; DNA-bin 99.8 5.8E-20 2E-24 132.6 5.5 64 143-206 15-78 (81)
23 1yz8_P Pituitary homeobox 2; D 99.8 2.4E-20 8.2E-25 130.5 3.2 64 144-207 1-64 (68)
24 1wh7_A ZF-HD homeobox family p 99.8 8.4E-20 2.9E-24 132.3 6.1 60 143-203 14-78 (80)
25 1ahd_P Antennapedia protein mu 99.8 5E-20 1.7E-24 129.0 4.7 62 146-207 2-63 (68)
26 2r5y_A Homeotic protein sex co 99.8 6E-20 2E-24 134.6 5.3 63 143-205 25-87 (88)
27 1b8i_A Ultrabithorax, protein 99.8 6.8E-20 2.3E-24 132.5 5.5 63 144-206 18-80 (81)
28 1ftt_A TTF-1 HD, thyroid trans 99.8 9.2E-20 3.2E-24 127.6 5.9 62 146-207 2-63 (68)
29 1ig7_A Homeotic protein MSX-1; 99.8 8.6E-20 2.9E-24 123.5 5.5 57 147-203 1-57 (58)
30 2da4_A Hypothetical protein DK 99.8 4.4E-20 1.5E-24 133.0 4.2 65 143-207 5-73 (80)
31 1zq3_P PRD-4, homeotic bicoid 99.8 9.8E-20 3.4E-24 127.4 5.5 62 146-207 2-63 (68)
32 3a01_A Homeodomain-containing 99.8 1.6E-19 5.6E-24 133.9 6.5 65 143-207 14-78 (93)
33 2k40_A Homeobox expressed in E 99.8 1.4E-19 4.8E-24 126.1 5.7 62 146-207 1-62 (67)
34 1jgg_A Segmentation protein EV 99.8 1.3E-19 4.4E-24 123.7 5.4 58 147-204 2-59 (60)
35 3nar_A ZHX1, zinc fingers and 99.8 1.5E-19 5.1E-24 134.6 5.6 64 144-207 23-86 (96)
36 1x2n_A Homeobox protein pknox1 99.8 2.9E-19 9.8E-24 126.5 6.8 65 143-207 4-71 (73)
37 2da5_A Zinc fingers and homeob 99.8 2.7E-19 9.3E-24 127.6 6.4 61 147-207 8-68 (75)
38 2ecc_A Homeobox and leucine zi 99.8 2.4E-19 8.1E-24 128.9 6.0 60 148-207 5-64 (76)
39 3rkq_A Homeobox protein NKX-2. 99.8 2.4E-19 8.3E-24 120.8 5.7 57 146-202 2-58 (58)
40 1uhs_A HOP, homeodomain only p 99.8 2.1E-19 7.3E-24 126.9 5.6 60 147-206 2-62 (72)
41 1akh_A Protein (mating-type pr 99.8 1.7E-19 5.9E-24 123.2 4.8 59 144-202 3-61 (61)
42 3a02_A Homeobox protein arista 99.8 1.9E-19 6.4E-24 122.9 5.0 58 149-206 2-59 (60)
43 1b72_A Protein (homeobox prote 99.8 1.7E-19 5.7E-24 134.6 5.0 64 144-207 32-95 (97)
44 2dn0_A Zinc fingers and homeob 99.8 3.3E-19 1.1E-23 127.3 6.1 61 146-206 8-68 (76)
45 2hi3_A Homeodomain-only protei 99.8 3.2E-19 1.1E-23 126.4 5.7 60 147-206 3-63 (73)
46 2cuf_A FLJ21616 protein; homeo 99.8 3E-19 1E-23 132.6 5.6 65 143-207 4-83 (95)
47 2ly9_A Zinc fingers and homeob 99.8 5.8E-19 2E-23 125.1 6.3 61 146-206 6-66 (74)
48 3a03_A T-cell leukemia homeobo 99.8 4.2E-19 1.4E-23 119.8 4.7 54 151-204 2-55 (56)
49 1puf_B PRE-B-cell leukemia tra 99.8 9.4E-19 3.2E-23 123.8 5.8 62 146-207 1-65 (73)
50 1du6_A PBX1, homeobox protein 99.7 8.5E-19 2.9E-23 121.0 5.3 59 146-204 3-64 (64)
51 2ecb_A Zinc fingers and homeob 99.7 1.5E-18 5.1E-23 128.2 5.7 55 152-206 17-71 (89)
52 2dmn_A Homeobox protein TGIF2L 99.7 2.4E-18 8.3E-23 125.0 6.5 64 144-207 5-71 (83)
53 2xsd_C POU domain, class 3, tr 99.7 1.1E-18 3.8E-23 141.9 5.0 65 143-207 96-160 (164)
54 1b72_B Protein (PBX1); homeodo 99.7 1.8E-18 6.3E-23 126.1 5.7 61 147-207 2-65 (87)
55 2cqx_A LAG1 longevity assuranc 99.7 9.4E-19 3.2E-23 124.2 3.5 61 146-206 8-69 (72)
56 1au7_A Protein PIT-1, GHF-1; c 99.7 1.9E-18 6.7E-23 137.9 5.4 63 143-205 84-146 (146)
57 1k61_A Mating-type protein alp 99.7 2.8E-18 9.7E-23 116.9 5.4 56 149-204 1-59 (60)
58 2dmp_A Zinc fingers and homeob 99.7 6.5E-18 2.2E-22 124.3 7.3 58 150-207 17-74 (89)
59 1e3o_C Octamer-binding transcr 99.7 3.2E-18 1.1E-22 138.4 5.6 61 144-204 99-159 (160)
60 2l9r_A Homeobox protein NKX-3. 99.7 4.4E-18 1.5E-22 120.1 5.3 57 151-207 9-65 (69)
61 1le8_B Mating-type protein alp 99.7 4.7E-18 1.6E-22 123.4 5.6 61 146-206 2-65 (83)
62 1mnm_C Protein (MAT alpha-2 tr 99.7 4.9E-18 1.7E-22 124.1 5.7 60 144-203 25-87 (87)
63 1lfb_A Liver transcription fac 99.7 4.2E-18 1.4E-22 128.0 5.0 64 144-207 7-91 (99)
64 2da6_A Hepatocyte nuclear fact 99.7 5.4E-18 1.8E-22 128.1 5.1 64 144-207 4-88 (102)
65 1wi3_A DNA-binding protein SAT 99.7 1.2E-17 4E-22 117.3 5.9 59 144-202 5-64 (71)
66 3d1n_I POU domain, class 6, tr 99.7 1.1E-17 3.8E-22 133.8 6.4 60 144-203 91-150 (151)
67 2e19_A Transcription factor 8; 99.7 2E-17 6.8E-22 114.9 5.9 55 151-205 8-62 (64)
68 1x2m_A LAG1 longevity assuranc 99.7 7.4E-18 2.5E-22 117.4 3.7 51 155-205 9-60 (64)
69 3nau_A Zinc fingers and homeob 99.7 1.2E-17 4.3E-22 116.7 4.2 53 153-205 11-63 (66)
70 3l1p_A POU domain, class 5, tr 99.7 1.6E-17 5.4E-22 133.7 4.7 61 144-204 94-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.7 5.4E-17 1.8E-21 131.2 5.4 63 143-205 94-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 2.1E-16 7.1E-21 110.5 4.9 56 152-207 4-62 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 3.4E-15 1.2E-19 124.5 2.4 61 144-204 113-194 (194)
74 2da7_A Zinc finger homeobox pr 99.5 3.4E-14 1.2E-18 100.2 4.3 48 155-202 14-61 (71)
75 2lk2_A Homeobox protein TGIF1; 99.4 4E-14 1.4E-18 104.4 3.8 56 151-206 10-68 (89)
76 2h8r_A Hepatocyte nuclear fact 99.4 1.5E-13 5.2E-18 116.3 5.0 60 143-202 139-219 (221)
77 1mh3_A Maltose binding-A1 home 99.4 1.8E-13 6.2E-18 121.7 4.4 57 146-202 365-421 (421)
78 2nzz_A Penetratin conjugated G 98.9 1.6E-10 5.3E-15 71.9 0.3 20 188-207 1-20 (37)
79 2ys9_A Homeobox and leucine zi 96.3 0.0026 9E-08 44.4 2.9 41 157-197 17-57 (70)
80 2glo_A Brinker CG9653-PA; prot 79.5 1.6 5.4E-05 28.0 3.1 46 150-196 3-48 (59)
81 1hlv_A CENP-B, major centromer 77.9 3.5 0.00012 30.1 5.0 49 148-199 3-51 (131)
82 2elh_A CG11849-PA, LD40883P; s 73.6 6.5 0.00022 27.1 5.2 45 147-196 17-61 (87)
83 1tc3_C Protein (TC3 transposas 69.1 5.9 0.0002 23.0 3.7 40 152-196 5-44 (51)
84 3hug_A RNA polymerase sigma fa 68.9 3.8 0.00013 28.3 3.1 48 152-204 37-84 (92)
85 1jko_C HIN recombinase, DNA-in 65.4 3.2 0.00011 24.7 1.8 41 153-198 6-46 (52)
86 2o8x_A Probable RNA polymerase 62.9 6.4 0.00022 25.1 3.1 48 152-204 15-62 (70)
87 3c57_A Two component transcrip 61.6 7.5 0.00026 27.2 3.5 47 152-204 27-73 (95)
88 2lv7_A Calcium-binding protein 60.6 17 0.0006 25.4 5.4 46 150-195 27-79 (100)
89 1p4w_A RCSB; solution structur 56.7 13 0.00046 26.5 4.2 46 150-201 32-77 (99)
90 1je8_A Nitrate/nitrite respons 55.8 12 0.00042 25.3 3.7 47 151-203 20-66 (82)
91 2jn6_A Protein CGL2762, transp 54.6 13 0.00045 25.6 3.8 43 150-196 3-46 (97)
92 1iuf_A Centromere ABP1 protein 54.5 25 0.00085 26.4 5.7 52 147-198 6-61 (144)
93 2p7v_B Sigma-70, RNA polymeras 54.0 12 0.0004 24.2 3.3 52 152-204 5-56 (68)
94 2x7l_M HIV REV; nuclear export 53.5 4.5 0.00015 30.4 1.1 36 158-207 15-50 (115)
95 1fse_A GERE; helix-turn-helix 51.6 11 0.00038 24.2 2.9 47 151-203 10-56 (74)
96 1x3u_A Transcriptional regulat 51.6 8.9 0.0003 25.2 2.4 45 153-203 17-61 (79)
97 3mzy_A RNA polymerase sigma-H 51.5 11 0.00036 27.6 3.0 46 152-203 109-154 (164)
98 1tty_A Sigma-A, RNA polymerase 50.0 17 0.00058 24.8 3.7 52 152-204 18-69 (87)
99 1ku3_A Sigma factor SIGA; heli 49.8 14 0.00049 24.1 3.2 50 152-202 10-59 (73)
100 3lph_A Protein REV; helix-loop 49.4 4.1 0.00014 28.2 0.3 36 158-207 18-53 (72)
101 3i5g_B Myosin regulatory light 49.2 32 0.0011 25.5 5.5 41 148-188 5-50 (153)
102 1s7o_A Hypothetical UPF0122 pr 48.4 15 0.00051 26.8 3.4 47 152-203 22-68 (113)
103 2rnj_A Response regulator prot 45.7 13 0.00045 25.5 2.6 47 151-203 28-74 (91)
104 2kvr_A Ubiquitin carboxyl-term 44.2 8.1 0.00028 29.3 1.3 25 176-200 72-97 (130)
105 2rn7_A IS629 ORFA; helix, all 42.5 27 0.00093 24.4 3.9 47 150-196 4-53 (108)
106 1xsv_A Hypothetical UPF0122 pr 42.4 19 0.00065 26.1 3.1 47 152-203 25-71 (113)
107 2pmy_A RAS and EF-hand domain- 41.9 15 0.0005 24.7 2.3 45 151-195 19-68 (91)
108 1fi6_A EH domain protein REPS1 39.4 23 0.00079 24.0 3.0 44 152-195 2-50 (92)
109 1or7_A Sigma-24, RNA polymeras 38.7 22 0.00077 26.8 3.2 47 153-204 141-187 (194)
110 1c07_A Protein (epidermal grow 38.1 21 0.00073 24.4 2.7 43 153-195 4-51 (95)
111 1rp3_A RNA polymerase sigma fa 37.5 23 0.00079 27.5 3.1 47 153-204 188-234 (239)
112 2jpc_A SSRB; DNA binding prote 36.8 14 0.00047 23.0 1.4 27 177-203 17-43 (61)
113 3ulq_B Transcriptional regulat 35.9 42 0.0015 23.2 4.0 46 150-201 27-72 (90)
114 2xi8_A Putative transcription 34.9 14 0.00047 22.8 1.1 23 176-198 17-39 (66)
115 2r1j_L Repressor protein C2; p 33.6 15 0.00051 22.8 1.2 24 176-199 21-44 (68)
116 2rgt_A Fusion of LIM/homeobox 33.6 0.8 2.7E-05 35.8 -6.1 30 144-173 134-163 (169)
117 2x48_A CAG38821; archeal virus 33.3 32 0.0011 20.8 2.7 36 155-195 18-53 (55)
118 3bd1_A CRO protein; transcript 32.4 16 0.00055 24.0 1.2 23 176-198 14-36 (79)
119 1zug_A Phage 434 CRO protein; 32.2 16 0.00054 23.0 1.1 24 176-199 19-42 (71)
120 3bs3_A Putative DNA-binding pr 30.8 18 0.00062 23.1 1.2 24 176-199 26-49 (76)
121 2q24_A Putative TETR family tr 30.3 27 0.00091 26.1 2.3 40 158-199 21-60 (194)
122 2lhi_A Calmodulin, serine/thre 29.5 49 0.0017 25.1 3.7 39 150-188 2-45 (176)
123 2k27_A Paired box protein PAX- 29.3 1.1E+02 0.0037 22.7 5.6 41 151-196 24-64 (159)
124 3clo_A Transcriptional regulat 29.2 54 0.0018 26.6 4.2 48 151-204 196-243 (258)
125 1adr_A P22 C2 repressor; trans 29.0 20 0.00067 22.8 1.2 24 176-199 21-44 (76)
126 1j7q_A CAVP, calcium vector pr 28.8 76 0.0026 20.3 4.2 45 151-195 6-60 (86)
127 2b5a_A C.BCLI; helix-turn-heli 28.3 21 0.00071 22.8 1.2 23 176-198 26-48 (77)
128 1u78_A TC3 transposase, transp 28.2 66 0.0023 22.8 4.1 41 151-196 5-45 (141)
129 3omt_A Uncharacterized protein 28.0 22 0.00074 22.8 1.2 23 176-198 24-46 (73)
130 1r69_A Repressor protein CI; g 27.7 21 0.00073 22.2 1.1 24 176-199 17-40 (69)
131 2q0o_A Probable transcriptiona 26.8 61 0.0021 25.8 4.0 47 150-202 173-219 (236)
132 3b7h_A Prophage LP1 protein 11 25.8 25 0.00087 22.5 1.3 23 176-198 23-45 (78)
133 3kz3_A Repressor protein CI; f 25.7 24 0.00083 23.1 1.2 24 176-199 28-51 (80)
134 2k27_A Paired box protein PAX- 25.4 1.1E+02 0.0036 22.7 4.9 50 150-199 81-137 (159)
135 1y7y_A C.AHDI; helix-turn-heli 25.4 25 0.00087 22.1 1.2 23 176-198 29-51 (74)
136 2kpj_A SOS-response transcript 25.2 25 0.00085 23.9 1.2 24 176-199 25-48 (94)
137 2ktg_A Calmodulin, putative; e 24.8 63 0.0021 20.6 3.2 45 151-195 6-57 (85)
138 2a6c_A Helix-turn-helix motif; 24.4 29 0.00098 23.1 1.4 23 176-198 34-56 (83)
139 2opo_A Polcalcin CHE A 3; calc 23.9 50 0.0017 21.2 2.5 44 152-195 4-53 (86)
140 2hin_A GP39, repressor protein 23.5 30 0.001 23.4 1.3 22 176-197 13-34 (71)
141 2lfw_A PHYR sigma-like domain; 23.3 23 0.0008 26.4 0.8 48 152-204 93-140 (157)
142 1l3l_A Transcriptional activat 23.1 80 0.0028 25.0 4.1 46 150-201 171-216 (234)
143 3fwb_A Cell division control p 23.0 1.1E+02 0.0039 21.4 4.6 48 148-195 12-66 (161)
144 1avs_A Troponin C; muscle cont 22.7 86 0.003 20.3 3.6 44 152-195 13-63 (90)
145 1dtl_A Cardiac troponin C; hel 22.7 95 0.0032 21.9 4.1 46 150-195 9-62 (161)
146 2wiu_B HTH-type transcriptiona 22.6 36 0.0012 22.3 1.6 24 176-199 28-51 (88)
147 3t72_q RNA polymerase sigma fa 22.5 69 0.0024 22.7 3.2 50 153-203 20-69 (99)
148 2iai_A Putative transcriptiona 21.7 47 0.0016 25.6 2.3 40 158-198 36-75 (230)
149 1rzs_A Antirepressor, regulato 21.6 34 0.0012 21.8 1.2 19 176-194 13-31 (61)
150 1pdn_C Protein (PRD paired); p 21.6 84 0.0029 21.6 3.5 45 151-195 74-125 (128)
151 2ef8_A C.ECOT38IS, putative tr 21.4 34 0.0012 22.2 1.2 24 176-199 26-49 (84)
152 2joj_A Centrin protein; N-term 21.2 60 0.002 20.2 2.4 43 153-195 1-50 (77)
153 3f6w_A XRE-family like protein 21.0 34 0.0012 22.3 1.2 23 176-198 30-52 (83)
154 2q1z_A RPOE, ECF SIGE; ECF sig 21.0 14 0.00048 27.8 -0.9 46 153-203 136-181 (184)
155 2mys_B Myosin; muscle protein, 20.9 1.2E+02 0.0043 21.6 4.5 45 152-196 18-70 (166)
156 1etf_B REV peptide; complex (R 20.9 18 0.00062 20.2 -0.2 12 195-206 7-18 (26)
157 3fmy_A HTH-type transcriptiona 20.9 45 0.0016 21.6 1.8 41 151-198 9-49 (73)
158 2k9q_A Uncharacterized protein 20.6 33 0.0011 22.2 1.0 23 176-198 18-40 (77)
159 1k78_A Paired box protein PAX5 20.3 2.1E+02 0.0072 20.6 5.7 48 150-197 88-142 (149)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9e-21 Score=136.68 Aligned_cols=64 Identities=28% Similarity=0.390 Sum_probs=60.3
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
..+.+|.|+.|+..|+.+||..|..++||+..+++.||..++|+++||+|||||||+|+|+...
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 4557888999999999999999999999999999999999999999999999999999999765
No 2
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=9.6e-21 Score=133.21 Aligned_cols=65 Identities=22% Similarity=0.400 Sum_probs=60.7
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
.+..+++|++|+..|+.+||..|..++||+..++..||..++|+++||+|||||||+|+|+.+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPS 68 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCC
Confidence 35578899999999999999999999999999999999999999999999999999999997653
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=7.6e-21 Score=137.92 Aligned_cols=65 Identities=28% Similarity=0.420 Sum_probs=61.2
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
..+.+|.|+.|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|+.++.
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 45578899999999999999999999999999999999999999999999999999999998764
No 4
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.82 E-value=8.2e-21 Score=130.47 Aligned_cols=61 Identities=30% Similarity=0.464 Sum_probs=54.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccc
Q 028526 145 VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQ 205 (208)
Q Consensus 145 ~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q 205 (208)
++++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||||||+|+|++|
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 4678899999999999999999999999999999999999999999999999999999975
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1e-20 Score=135.80 Aligned_cols=64 Identities=28% Similarity=0.367 Sum_probs=60.4
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
..+.+|.|+.|+.+|+.+||..|..++||+..++++||..++|++.||+|||||||+|+|+++.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 4557888999999999999999999999999999999999999999999999999999999865
No 6
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=132.25 Aligned_cols=65 Identities=32% Similarity=0.509 Sum_probs=60.7
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
++..+|.|+.|+.+|+.+||..|..++||+..+++.||..++|++.||++||||||+|+|+....
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCC
Confidence 34578899999999999999999999999999999999999999999999999999999997653
No 7
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=131.93 Aligned_cols=65 Identities=25% Similarity=0.342 Sum_probs=60.9
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
.++.++.|++|+..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|+++..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 45578899999999999999999999999999999999999999999999999999999997653
No 8
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=132.65 Aligned_cols=65 Identities=18% Similarity=0.300 Sum_probs=61.0
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
..+.+|.|++|+.+|+.+||..|..++||+..++..||..+||++.||++||||||+|+|++...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 34578899999999999999999999999999999999999999999999999999999998764
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.9e-20 Score=134.83 Aligned_cols=65 Identities=28% Similarity=0.442 Sum_probs=61.0
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
..+.+|.|++|+.+|+.+||..|..++||+..+++.||..++|++++|+|||||||+|+|+++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 35578899999999999999999999999999999999999999999999999999999997654
No 10
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-20 Score=131.21 Aligned_cols=64 Identities=25% Similarity=0.386 Sum_probs=60.2
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
.+..++.|+.|+..|+.+||..|..++||+..+++.||..++|+++||++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 4557889999999999999999999999999999999999999999999999999999998754
No 11
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.81 E-value=1.5e-20 Score=129.60 Aligned_cols=61 Identities=31% Similarity=0.490 Sum_probs=56.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccc
Q 028526 145 VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQ 205 (208)
Q Consensus 145 ~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q 205 (208)
..+|.|+.|+..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4688899999999999999999999999999999999999999999999999999999865
No 12
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.81 E-value=2.3e-20 Score=133.59 Aligned_cols=65 Identities=31% Similarity=0.525 Sum_probs=60.3
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
..++++.|++|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|+.+.+
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 34567889999999999999999999999999999999999999999999999999999987654
No 13
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=3e-20 Score=134.52 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=57.9
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQ----HSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~----~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
..+++|.|+.|+.+|+.+||..|+. ++||+..+|++||..|+|+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3557889999999999999999999 999999999999999999999999999999999986
No 14
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-20 Score=134.11 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=60.2
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
...+|.|++|+.+|+.+||..|..++||+..++..||..++|++++|+|||||||+|+|+++.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999997643
No 15
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=2.2e-20 Score=134.69 Aligned_cols=64 Identities=27% Similarity=0.480 Sum_probs=60.2
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
++..+|.|+.|+..|+.+||..|..++||+..++..||..++|++++|+|||||||+|+|+++.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 3457889999999999999999999999999999999999999999999999999999999764
No 16
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=4e-20 Score=130.01 Aligned_cols=63 Identities=33% Similarity=0.590 Sum_probs=59.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
...++.|++|+.+|+.+||..|..++||+..++..||..++|+++||++||||||+|+|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 346788999999999999999999999999999999999999999999999999999998764
No 17
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.80 E-value=5.2e-20 Score=131.77 Aligned_cols=64 Identities=34% Similarity=0.515 Sum_probs=60.0
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
.+..++.|+.|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|+...
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 3457888999999999999999999999999999999999999999999999999999998654
No 18
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=6.9e-20 Score=129.82 Aligned_cols=65 Identities=29% Similarity=0.430 Sum_probs=60.8
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
.+++++.|++|+..|+.+||..|..++||+..++..||..+||++.+|++||||||+|+|+++..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 45678889999999999999999999999999999999999999999999999999999997653
No 19
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.80 E-value=5.3e-20 Score=127.89 Aligned_cols=62 Identities=24% Similarity=0.357 Sum_probs=59.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 145 VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 145 ~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
+++|.|+.|+.+|+.+||..|..++||+..++..||..+||++.||++||||||+|+|+++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 36788999999999999999999999999999999999999999999999999999999764
No 20
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.79 E-value=9.3e-20 Score=129.30 Aligned_cols=64 Identities=28% Similarity=0.435 Sum_probs=59.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
.+.++.|++|+..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|+...+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 3468889999999999999999999999999999999999999999999999999999997543
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.79 E-value=5.1e-20 Score=126.08 Aligned_cols=59 Identities=29% Similarity=0.555 Sum_probs=53.7
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
.+|.|+.|+..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 57889999999999999999999999999999999999999999999999999999873
No 22
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.79 E-value=5.8e-20 Score=132.63 Aligned_cols=64 Identities=27% Similarity=0.436 Sum_probs=59.2
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
..+++|.|+.|+..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|+++.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4557888999999999999999999999999999999999999999999999999999998754
No 23
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.79 E-value=2.4e-20 Score=130.46 Aligned_cols=64 Identities=28% Similarity=0.479 Sum_probs=60.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
|++++.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||||||+|+|+++..
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 3578899999999999999999999999999999999999999999999999999999997653
No 24
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.79 E-value=8.4e-20 Score=132.29 Aligned_cols=60 Identities=17% Similarity=0.317 Sum_probs=56.7
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
..+++|.||.|+.+|+.+|| .|.. ++||+..+|++||..++|+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45578899999999999999 7999 999999999999999999999999999999999986
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.79 E-value=5e-20 Score=129.03 Aligned_cols=62 Identities=29% Similarity=0.502 Sum_probs=58.8
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
++|.|+.|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 57889999999999999999999999999999999999999999999999999999997653
No 26
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.79 E-value=6e-20 Score=134.59 Aligned_cols=63 Identities=30% Similarity=0.547 Sum_probs=55.8
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQ 205 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q 205 (208)
.+..+|.|+.|+..|+.+||..|..++||+..++..||..+||++++|+|||||||+|+|+++
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 345788999999999999999999999999999999999999999999999999999999875
No 27
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.79 E-value=6.8e-20 Score=132.54 Aligned_cols=63 Identities=30% Similarity=0.531 Sum_probs=55.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
+..+|.|+.|+..|+.+||..|..++||+..++.+||..+||++++|+|||||||+|+|+++.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 446888999999999999999999999999999999999999999999999999999999764
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.79 E-value=9.2e-20 Score=127.56 Aligned_cols=62 Identities=29% Similarity=0.533 Sum_probs=58.9
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
+++.|+.|+..|+.+||..|..++||+..++..||..+||++++|++||||||+|+|+...+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 57889999999999999999999999999999999999999999999999999999997654
No 29
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=8.6e-20 Score=123.54 Aligned_cols=57 Identities=32% Similarity=0.507 Sum_probs=55.3
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 147 rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
+|.|+.|+..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999987
No 30
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.4e-20 Score=132.98 Aligned_cols=65 Identities=17% Similarity=0.344 Sum_probs=60.3
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQH----STLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~----~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
..+.+|.|+.|+.+|+.+||.+|..+ +||+..++++||..+||++.||+|||||||+|+|+...+
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 34578889999999999999999999 999999999999999999999999999999999986543
No 31
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=9.8e-20 Score=127.42 Aligned_cols=62 Identities=32% Similarity=0.485 Sum_probs=58.7
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
++|.|+.|+..|+.+||..|..++||+..++..||..+||++.+|+|||||||+|+|+...+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 57889999999999999999999999999999999999999999999999999999986543
No 32
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.78 E-value=1.6e-19 Score=133.88 Aligned_cols=65 Identities=31% Similarity=0.483 Sum_probs=60.2
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
..+.++.|+.|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|++..+
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 34577889999999999999999999999999999999999999999999999999999997543
No 33
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=126.10 Aligned_cols=62 Identities=29% Similarity=0.486 Sum_probs=58.6
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
.+|.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||||||+|+|+...+
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 36889999999999999999999999999999999999999999999999999999997654
No 34
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=1.3e-19 Score=123.71 Aligned_cols=58 Identities=33% Similarity=0.481 Sum_probs=55.6
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 147 rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
+|.|+.|+..|+.+||..|..++||+..++..||..+||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999986
No 35
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=134.65 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=57.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
...+|+|++|+..|+.+||..|..++||+..++++||..+||+++||++||||||+|+|+++.+
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 3467889999999999999999999999999999999999999999999999999999997653
No 36
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.9e-19 Score=126.47 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=60.3
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
.++.+++|+.|+..|+.+|+.+|.. ++||+..++++||..+||+++||++||||||+|+|+...+
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 3557888999999999999999987 9999999999999999999999999999999999997765
No 37
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-19 Score=127.59 Aligned_cols=61 Identities=25% Similarity=0.352 Sum_probs=56.8
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 147 rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
.++|++|+.+|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|+++..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 3567789999999999999999999999999999999999999999999999999997653
No 38
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=2.4e-19 Score=128.88 Aligned_cols=60 Identities=28% Similarity=0.284 Sum_probs=56.0
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 148 r~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
.+|.+|+.+|+.+|+..|..++||+..+|++||..+||+++||+|||||||+|+|+.+.+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 456679999999999999999999999999999999999999999999999999997653
No 39
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.77 E-value=2.4e-19 Score=120.81 Aligned_cols=57 Identities=33% Similarity=0.539 Sum_probs=54.9
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhc
Q 028526 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFH 202 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~K 202 (208)
+++.|+.|+..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 567899999999999999999999999999999999999999999999999999986
No 40
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=2.1e-19 Score=126.93 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=56.7
Q ss_pred CCCCccCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 147 ARKKLRLTKEQSALLEESFKQ-HSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 147 rr~Rt~fs~~Ql~~Le~~F~~-~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
.++|++|+..|+.+||..|.. ++||+..++..||..+||+++||++||||||+|+|+++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 467899999999999999996 999999999999999999999999999999999999764
No 41
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.77 E-value=1.7e-19 Score=123.21 Aligned_cols=59 Identities=32% Similarity=0.593 Sum_probs=48.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFH 202 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~K 202 (208)
.+.++.|+.|+..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999986
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.77 E-value=1.9e-19 Score=122.87 Aligned_cols=58 Identities=28% Similarity=0.461 Sum_probs=50.7
Q ss_pred CCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 149 KKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 149 ~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
.|++|+..|+.+||..|..++||+..++..||..+||+++||++||||||+|+|++++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4789999999999999999999999999999999999999999999999999998753
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.7e-19 Score=134.55 Aligned_cols=64 Identities=28% Similarity=0.431 Sum_probs=57.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
+..++.|+.|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+|+++.+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 4578889999999999999999999999999999999999999999999999999999998765
No 44
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-19 Score=127.26 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=57.4
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
..+.|++|+.+|+.+||..|..++||+..++++||..+||+++||++||||||+|+|+++.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 4556899999999999999999999999999999999999999999999999999999764
No 45
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=3.2e-19 Score=126.42 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=56.8
Q ss_pred CCCCccCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 147 ARKKLRLTKEQSALLEESFKQ-HSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 147 rr~Rt~fs~~Ql~~Le~~F~~-~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
+++|++|+..|+.+||..|.. ++||+..++..||..+||+++||++||||||+|+|+++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 567899999999999999995 999999999999999999999999999999999999764
No 46
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=3e-19 Score=132.65 Aligned_cols=65 Identities=20% Similarity=0.333 Sum_probs=61.2
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLN---------------LRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lg---------------Ls~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
..+++|.|+.|+..|+.+||..|..++||+..+|+.||..++ |++.+|++||||||+|+|+++.+
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 455788999999999999999999999999999999999999 99999999999999999998764
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=5.8e-19 Score=125.08 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=58.1
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
.++.|+.|+.+|+.+||..|..++||+..++++||..+||+++||++||||||+|+|+.+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 5678999999999999999999999999999999999999999999999999999999764
No 48
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.76 E-value=4.2e-19 Score=119.75 Aligned_cols=54 Identities=31% Similarity=0.529 Sum_probs=51.1
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
|.|+..|+.+||..|..++||+..++..||..+||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 49
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.75 E-value=9.4e-19 Score=123.80 Aligned_cols=62 Identities=26% Similarity=0.432 Sum_probs=58.1
Q ss_pred CCCCCccCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 146 NARKKLRLTKEQSALLEESF---KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F---~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
.+|+|++|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+...+
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 36789999999999999999 899999999999999999999999999999999999987654
No 50
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=8.5e-19 Score=120.96 Aligned_cols=59 Identities=22% Similarity=0.382 Sum_probs=56.4
Q ss_pred CCCCCccCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 146 NARKKLRLTKEQSALLEESF---KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F---~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
.+++|+.|+..|+.+|+.+| ..++||+..+++.||..+||++.||++||||||+|+||+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 57889999999999999999 899999999999999999999999999999999999874
No 51
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.5e-18 Score=128.24 Aligned_cols=55 Identities=27% Similarity=0.460 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
+|+.+|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|+|+++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999988654
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-18 Score=125.05 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=58.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
.+++++|++|+.+|+.+|+.+|.. ++||+..++++||..+||+++||++||||||+|+|+...+
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 457788999999999999999987 5999999999999999999999999999999999986543
No 53
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.74 E-value=1.1e-18 Score=141.86 Aligned_cols=65 Identities=25% Similarity=0.369 Sum_probs=52.9
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
..++||+|++|+..|+.+||..|..++||+..+|..||..++|+++||+|||||||+|+||++..
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 35578889999999999999999999999999999999999999999999999999999998754
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.74 E-value=1.8e-18 Score=126.07 Aligned_cols=61 Identities=26% Similarity=0.440 Sum_probs=56.9
Q ss_pred CCCCccCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 147 ARKKLRLTKEQSALLEESF---KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 147 rr~Rt~fs~~Ql~~Le~~F---~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
||+|++|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+...+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6789999999999999999 899999999999999999999999999999999999987543
No 55
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=9.4e-19 Score=124.24 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=56.2
Q ss_pred CCCCCccCCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 146 NARKKLRLTKEQSALLEESF-KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F-~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
..+.|.+++.+|+.+||..| ..++||+..++++||..+||+++||+|||||||+|+|+...
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~ 69 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGP 69 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCC
Confidence 45667778999999999999 99999999999999999999999999999999999998653
No 56
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.73 E-value=1.9e-18 Score=137.86 Aligned_cols=63 Identities=25% Similarity=0.437 Sum_probs=56.4
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQ 205 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q 205 (208)
..++||.|+.|+..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|+||++
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence 345788899999999999999999999999999999999999999999999999999999864
No 57
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.73 E-value=2.8e-18 Score=116.88 Aligned_cols=56 Identities=29% Similarity=0.440 Sum_probs=53.6
Q ss_pred CCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 149 KKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 149 ~Rt~fs~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
+|++|+.+|+.+||.+|.. ++||+..++..||..+||++.||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4678999999999999999 9999999999999999999999999999999999974
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.5e-18 Score=124.34 Aligned_cols=58 Identities=24% Similarity=0.356 Sum_probs=54.0
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
+..|+.+|+.+||..|..++||+..++++||..++|++++|+|||||||+|+|+++..
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 3459999999999999999999999999999999999999999999999999986643
No 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.72 E-value=3.2e-18 Score=138.36 Aligned_cols=61 Identities=25% Similarity=0.428 Sum_probs=55.1
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
.++||+|+.|+..|+.+||..|..++||+..+|..||..+||+++||+|||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4578899999999999999999999999999999999999999999999999999999986
No 60
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=4.4e-18 Score=120.10 Aligned_cols=57 Identities=32% Similarity=0.470 Sum_probs=53.9
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
..++..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|+|+++.+
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 458999999999999999999999999999999999999999999999999998754
No 61
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.72 E-value=4.7e-18 Score=123.36 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=55.0
Q ss_pred CCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 146 NARKKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
++++|++|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 3456777999999999999999 999999999999999999999999999999999998653
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.72 E-value=4.9e-18 Score=124.11 Aligned_cols=60 Identities=27% Similarity=0.394 Sum_probs=56.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
..++++|++|+.+|+.+|+.+|.. ++||+..+++.||..+||+++||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 446777999999999999999999 999999999999999999999999999999999984
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.71 E-value=4.2e-18 Score=128.05 Aligned_cols=64 Identities=17% Similarity=0.378 Sum_probs=54.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH------------------hC---CCccchhhhhchhhhhhc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQ------------------LN---LRPRQVEVWFQNRRASFH 202 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~------------------lg---Ls~rqVqvWFQNRRaK~K 202 (208)
.+.+|.|+.|+..|+.+||..|..++||+..+|++||.. || |++.+|+|||||||+++|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 457888999999999999999999999999999999999 88 999999999999999999
Q ss_pred ccccc
Q 028526 203 FLQDK 207 (208)
Q Consensus 203 k~q~~ 207 (208)
+++..
T Consensus 87 ~k~~~ 91 (99)
T 1lfb_A 87 FRHKL 91 (99)
T ss_dssp CCC--
T ss_pred Hhchh
Confidence 88764
No 64
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.4e-18 Score=128.05 Aligned_cols=64 Identities=20% Similarity=0.403 Sum_probs=59.9
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh---------------------CCCccchhhhhchhhhhhc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQL---------------------NLRPRQVEVWFQNRRASFH 202 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l---------------------gLs~rqVqvWFQNRRaK~K 202 (208)
+++||.|+.|++.|+.+||..|..++||+..+|++||..+ .|++.+|++||||||+++|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 4578899999999999999999999999999999999999 7999999999999999999
Q ss_pred ccccc
Q 028526 203 FLQDK 207 (208)
Q Consensus 203 k~q~~ 207 (208)
+++..
T Consensus 84 r~~~~ 88 (102)
T 2da6_A 84 FRQKL 88 (102)
T ss_dssp HHHHH
T ss_pred HhhHh
Confidence 87653
No 65
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.2e-17 Score=117.35 Aligned_cols=59 Identities=19% Similarity=0.302 Sum_probs=55.4
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQ-HSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFH 202 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~-~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~K 202 (208)
..++|.||.|+.+|+.+|+..|+. ++||+.+.|+.||.++||++++|+|||||||--.+
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 457899999999999999999999 99999999999999999999999999999997544
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=133.85 Aligned_cols=60 Identities=22% Similarity=0.425 Sum_probs=57.6
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
+++||+|+.|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 457888999999999999999999999999999999999999999999999999999987
No 67
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2e-17 Score=114.89 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=51.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccc
Q 028526 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQ 205 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q 205 (208)
..++..|+.+||..|..++||+..+|.+||..+||++++|+|||||||+|.++.+
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 3456899999999999999999999999999999999999999999999998754
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=7.4e-18 Score=117.37 Aligned_cols=51 Identities=25% Similarity=0.442 Sum_probs=47.2
Q ss_pred HHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccc
Q 028526 155 KEQSALLEESF-KQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQ 205 (208)
Q Consensus 155 ~~Ql~~Le~~F-~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q 205 (208)
..|+.+||..| ..++||+..+|.+||.+|+|+++||+|||||||+|+|+..
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 45899999999 5799999999999999999999999999999999999753
No 69
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=116.68 Aligned_cols=53 Identities=26% Similarity=0.273 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccc
Q 028526 153 LTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQ 205 (208)
Q Consensus 153 fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q 205 (208)
-+.+|+.+||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 36899999999999999999999999999999999999999999999999864
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.68 E-value=1.6e-17 Score=133.72 Aligned_cols=61 Identities=28% Similarity=0.337 Sum_probs=57.7
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
++++|+|++|+..|+.+||..|..++||+..++..||..+||+++||+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4578889999999999999999999999999999999999999999999999999999974
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.66 E-value=5.4e-17 Score=131.20 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=55.1
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccc
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQ 205 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q 205 (208)
..+.||.|+.|+..|+.+|+..|..++||+..+|+.||..+||+++||+|||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 345788999999999999999999999999999999999999999999999999999999864
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=2.1e-16 Score=110.48 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=50.7
Q ss_pred cCCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 152 RLTKEQSALLEESFK---QHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~---~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
+|+.+|+.+|+.+|. .++||+..++++||..+||+++||++||||||+|+|+...+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 699999999999999 99999999999999999999999999999999999986553
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.51 E-value=3.4e-15 Score=124.46 Aligned_cols=61 Identities=18% Similarity=0.387 Sum_probs=54.0
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCccchhhhhchhhhhhc
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLN---------------------LRPRQVEVWFQNRRASFH 202 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lg---------------------Ls~rqVqvWFQNRRaK~K 202 (208)
.+.||.|+.|+..|+.+|+..|..++||+..+|++||..++ |++.+|++||||||+++|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 45788899999999999999999999999999999999999 999999999999999987
Q ss_pred cc
Q 028526 203 FL 204 (208)
Q Consensus 203 k~ 204 (208)
.+
T Consensus 193 ~~ 194 (194)
T 1ic8_A 193 FR 194 (194)
T ss_dssp --
T ss_pred cC
Confidence 53
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.4e-14 Score=100.16 Aligned_cols=48 Identities=17% Similarity=0.325 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhc
Q 028526 155 KEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFH 202 (208)
Q Consensus 155 ~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~K 202 (208)
+.|+.+|+.+|..+++|+.+++..||..+||++++|+|||||||+...
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccccc
Confidence 578999999999999999999999999999999999999999998543
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.44 E-value=4e-14 Score=104.41 Aligned_cols=56 Identities=25% Similarity=0.261 Sum_probs=51.7
Q ss_pred ccCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccccc
Q 028526 151 LRLTKEQSALLEESFKQ---HSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQD 206 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~ 206 (208)
.-|+.++..+|+.+|.. ++||+..++.+||..+||++.||++||||||+|+++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 35899999999999987 899999999999999999999999999999999987543
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=116.32 Aligned_cols=60 Identities=18% Similarity=0.377 Sum_probs=53.9
Q ss_pred cCCCCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCccchhhhhchhhhhh
Q 028526 143 DGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLN---------------------LRPRQVEVWFQNRRASF 201 (208)
Q Consensus 143 ~~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lg---------------------Ls~rqVqvWFQNRRaK~ 201 (208)
..+.||.|+.|++.|+.+|+..|..++||+..+|++||..+| |++.+|++||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 345788899999999999999999999999999999999988 89999999999999976
Q ss_pred c
Q 028526 202 H 202 (208)
Q Consensus 202 K 202 (208)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.38 E-value=1.8e-13 Score=121.70 Aligned_cols=57 Identities=30% Similarity=0.585 Sum_probs=53.4
Q ss_pred CCCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhc
Q 028526 146 NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFH 202 (208)
Q Consensus 146 ~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~K 202 (208)
.++.++.++..|+..||+.|+.++||+..+|++||.++||+++||++||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 345577899999999999999999999999999999999999999999999999987
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.91 E-value=1.6e-10 Score=71.88 Aligned_cols=20 Identities=40% Similarity=0.747 Sum_probs=18.0
Q ss_pred cchhhhhchhhhhhcccccc
Q 028526 188 RQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 188 rqVqvWFQNRRaK~Kk~q~~ 207 (208)
+||+|||||||+|||+++.+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 69999999999999998764
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.25 E-value=0.0026 Score=44.37 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchh
Q 028526 157 QSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNR 197 (208)
Q Consensus 157 Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNR 197 (208)
-..+|+++|..++.+.......|+.+..|+..||+.||--|
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999644
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=79.49 E-value=1.6 Score=28.03 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=31.5
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhch
Q 028526 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQN 196 (208)
|..|+.++.......+... ........++|.++|++...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 4468888876665444432 221223568999999999999999753
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=77.89 E-value=3.5 Score=30.09 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=37.8
Q ss_pred CCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhh
Q 028526 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRA 199 (208)
Q Consensus 148 r~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRa 199 (208)
++|..|+.++...+-..+..+.... ..+||..+|++...|..|..+++.
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 3567899999877777775555554 336899999999999999987654
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=73.60 E-value=6.5 Score=27.10 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=32.1
Q ss_pred CCCCccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhch
Q 028526 147 ARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (208)
Q Consensus 147 rr~Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQN 196 (208)
++.+..|+.++.......+.. .. -..+||..+|++...|..|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 345667888886555555642 22 2567899999999999999843
No 83
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=69.11 E-value=5.9 Score=22.97 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhch
Q 028526 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQN 196 (208)
.++..+...+...|... + ...+||..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46676665555555432 2 2567899999999999999853
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=68.86 E-value=3.8 Score=28.34 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
.++..+..+|.-.|-... ...+||..+|++...|+.+...-|.+.|+.
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 377888888877654322 357889999999999999998777777653
No 85
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=65.41 E-value=3.2 Score=24.73 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhh
Q 028526 153 LTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRR 198 (208)
Q Consensus 153 fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRR 198 (208)
++.++...+...+... . ...+||..+|++...|..|+....
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 5555555555555433 2 256789999999999999996443
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=62.91 E-value=6.4 Score=25.14 Aligned_cols=48 Identities=13% Similarity=-0.057 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
.+++.+..+|...|-.. + ...++|..+|++...|+.|...-+.+.|+.
T Consensus 15 ~L~~~~r~il~l~~~~g-~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-L----SYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 36788888888776432 1 356889999999999999998777776653
No 87
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=61.61 E-value=7.5 Score=27.23 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
.++..+..+|.-.+. .+ ...+||..+|++...|+.+..+-+.|.+..
T Consensus 27 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGLLSE--GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 488899998887533 22 247899999999999999998877776653
No 88
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=60.58 E-value=17 Score=25.44 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=37.7
Q ss_pred CccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhC--CCccchhhhhc
Q 028526 150 KLRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLN--LRPRQVEVWFQ 195 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lg--Ls~rqVqvWFQ 195 (208)
...++.+|+..|...|.. +.+.+..+...+...+| ++..+|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445889999999999974 56899999999888887 46778888885
No 89
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=56.72 E-value=13 Score=26.46 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=35.2
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhh
Q 028526 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASF 201 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~ 201 (208)
...+++.+..+|.-.+.- + ...+||..++++...|+.+..+-+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G--~----s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG--F----LVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT--C----CHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 345899999999776532 2 237899999999999999988666554
No 90
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=55.84 E-value=12 Score=25.33 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=36.0
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
..++..+..+|.-.+ ..+ ...+||..+|++...|+.+..+-+.|.+.
T Consensus 20 ~~Lt~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIA--QGL----PNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 358888999888743 222 35688999999999999999877766654
No 91
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=54.57 E-value=13 Score=25.62 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=30.6
Q ss_pred CccCCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhCCCccchhhhhch
Q 028526 150 KLRLTKEQSALLEESFKQH-STLNPKQKQALARQLNLRPRQVEVWFQN 196 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~~-~yPs~~~r~~LA~~lgLs~rqVqvWFQN 196 (208)
|..|+.++....-..+... .. ....+|..+|++...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3468888876555555332 22 2668899999999999999854
No 92
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=54.47 E-value=25 Score=26.43 Aligned_cols=52 Identities=10% Similarity=0.159 Sum_probs=39.3
Q ss_pred CCCCccCCHHHHHHHHHHH-hhCCCCCHHHHHHHH-HHh--CCCccchhhhhchhh
Q 028526 147 ARKKLRLTKEQSALLEESF-KQHSTLNPKQKQALA-RQL--NLRPRQVEVWFQNRR 198 (208)
Q Consensus 147 rr~Rt~fs~~Ql~~Le~~F-~~~~yPs~~~r~~LA-~~l--gLs~rqVqvWFQNRR 198 (208)
+++|.++|.+|...+-..+ ..++..+..+....| .++ +++...|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 6778899999999999998 667777655444432 267 788889999987754
No 93
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=54.04 E-value=12 Score=24.18 Aligned_cols=52 Identities=10% Similarity=0.125 Sum_probs=37.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
.+++.+..+|...|....+- .....++|..+|++...|+.+...-+.+.|..
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 36788888888887321111 11246789999999999999998777776653
No 94
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=53.50 E-value=4.5 Score=30.42 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=23.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 158 SALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 158 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
+.+.+-.|+.|+||..+- -+|- -.|||.+||.+|.+
T Consensus 15 vRiIkiLyQSNPyP~peG-----------TRqa---RRNRRRRWR~RQrQ 50 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEG-----------TRQA---RRNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHHSSCCCCCCC-----------CTTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCC-----------chhh---hHhHHHHHHHHHHH
Confidence 345566688999997541 1111 25899999887653
No 95
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=51.62 E-value=11 Score=24.19 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=35.3
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
..+++.+..+|...+ ..+ ...++|..+|++...|+.++..-+.+.+.
T Consensus 10 ~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 458889999998742 223 34679999999999999999876665543
No 96
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=51.62 E-value=8.9 Score=25.19 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 153 LTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 153 fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
+++.+..+|.-.| ..+ ...++|..+|++...|+.+..+-+.|.+.
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 6777788887632 222 24589999999999999999877777664
No 97
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=51.50 E-value=11 Score=27.63 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
.+++.+..+|. .|- ..+ ...+||..+|++...|+.+...-|.+.|+
T Consensus 109 ~L~~~~r~v~~-~~~-~g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-RGY----SYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHT-TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46777777877 433 222 35789999999999999999877777665
No 98
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=49.96 E-value=17 Score=24.76 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
.+++.+..+|...|-...- ......+||..+|++...|+.|...-+.+.|..
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3778888888887752100 011256789999999999999998777776653
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=49.78 E-value=14 Score=24.12 Aligned_cols=50 Identities=4% Similarity=0.069 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhc
Q 028526 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFH 202 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~K 202 (208)
.+++.+..+|...|-.... ......+||..+|++...|+.|...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3788888999888752100 0112468899999999999999987776666
No 100
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=49.36 E-value=4.1 Score=28.22 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=23.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcccccc
Q 028526 158 SALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFLQDK 207 (208)
Q Consensus 158 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~q~~ 207 (208)
+.+.+-.|+.|+||+.+-... | =.|||.+||.+|.+
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHH
Confidence 445666689999987542111 1 14888888887653
No 101
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=49.18 E-value=32 Score=25.51 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=32.7
Q ss_pred CCCccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcc
Q 028526 148 RKKLRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPR 188 (208)
Q Consensus 148 r~Rt~fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgLs~r 188 (208)
.+|..+|.+|+..|...|.. +.+.+..+...+.+.+|+...
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 34567999999999999974 568999999998888887554
No 102
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=48.45 E-value=15 Score=26.81 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
.+++.|..++.-.|.... ...++|..+|++...|+.|...-|.+.|+
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467788888877654332 24688999999999999999877776654
No 103
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=45.67 E-value=13 Score=25.48 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=35.6
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
..++..+..+|.-.+. .+. ..+||..+|++...|+.+..+-+.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GYS----NQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TCC----TTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHc--CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3588888888877432 222 3578999999999999999877777654
No 104
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=44.23 E-value=8.1 Score=29.34 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCccchhhhhc-hhhhh
Q 028526 176 KQALARQLNLRPRQVEVWFQ-NRRAS 200 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQ-NRRaK 200 (208)
...+|..+|++..+++.|+- ||..+
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~RqN~ 97 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQARSNG 97 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCCBTT
T ss_pred HHHHHHHhCCCcccEEEEEeecCCCC
Confidence 56789999999999999985 44333
No 105
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=42.49 E-value=27 Score=24.39 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=31.3
Q ss_pred CccCCHHHHHHHHHHHhhC--CCCCH-HHHHHHHHHhCCCccchhhhhch
Q 028526 150 KLRLTKEQSALLEESFKQH--STLNP-KQKQALARQLNLRPRQVEVWFQN 196 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~~--~yPs~-~~r~~LA~~lgLs~rqVqvWFQN 196 (208)
+..|+.++....-..+... .+.+. .....+|..+|++...|..|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 3468888875444444322 12232 35678999999999999999754
No 106
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=42.40 E-value=19 Score=26.11 Aligned_cols=47 Identities=17% Similarity=0.102 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
.+++.+..+|.-.|.... ...++|..+|++...|+.+...-|.+.|+
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 367777777776653322 24688999999999999999877777665
No 107
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=41.94 E-value=15 Score=24.72 Aligned_cols=45 Identities=29% Similarity=0.368 Sum_probs=36.5
Q ss_pred ccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCccchhhhhc
Q 028526 151 LRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQVEVWFQ 195 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgLs~rqVqvWFQ 195 (208)
..++..+...|...|.. +.+.+..+...+...+|++..+|+.+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 34777888888888864 4578889988888889998888888885
No 108
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=39.44 E-value=23 Score=24.01 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCccchhhhhc
Q 028526 152 RLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQVEVWFQ 195 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgLs~rqVqvWFQ 195 (208)
.++.++...+...|.. +.+.+..+...+...++++..+++.+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3577888888888874 4468888888888888888877776664
No 109
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=38.67 E-value=22 Score=26.84 Aligned_cols=47 Identities=9% Similarity=0.001 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 153 LTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 153 fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
+++.+..+|.-.|-.. + ...+||..+|++...|+.+...-|.+.|+.
T Consensus 141 L~~~~r~vl~l~~~~g-~----s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-L----SYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC-C----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5666667776655322 1 246889999999999999998777777653
No 110
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=38.11 E-value=21 Score=24.40 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCccchhhhhc
Q 028526 153 LTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPRQVEVWFQ 195 (208)
Q Consensus 153 fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgLs~rqVqvWFQ 195 (208)
++.++...|+..|.. +.+.+..+...+...++++..+|+.+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567788888888864 4578888888888888888887777764
No 111
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=37.53 E-value=23 Score=27.54 Aligned_cols=47 Identities=11% Similarity=0.136 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 153 LTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 153 fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
+++.+..+|...|-.. ....+||..+|++...|+.+...-|.+.|+.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 6777777777766322 1356889999999999999998777777654
No 112
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=36.81 E-value=14 Score=22.98 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=22.6
Q ss_pred HHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 177 QALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 177 ~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
.++|..+|++...|+.+..+-+.|.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 578999999999999999877666544
No 113
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.88 E-value=42 Score=23.16 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=34.2
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhh
Q 028526 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASF 201 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~ 201 (208)
...++..+..+|.-.++ .+ ...+||..++++...|+....+-+.|.
T Consensus 27 ~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 44589999999987762 22 357889999999999999887655544
No 114
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=34.87 E-value=14 Score=22.84 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCccchhhhhchhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRR 198 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (208)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 115
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=33.62 E-value=15 Score=22.81 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccchhhhhchhhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRRA 199 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRRa 199 (208)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 116
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=33.62 E-value=0.8 Score=35.81 Aligned_cols=30 Identities=0% Similarity=-0.063 Sum_probs=21.3
Q ss_pred CCCCCCCccCCHHHHHHHHHHHhhCCCCCH
Q 028526 144 GVNARKKLRLTKEQSALLEESFKQHSTLNP 173 (208)
Q Consensus 144 ~~~rr~Rt~fs~~Ql~~Le~~F~~~~yPs~ 173 (208)
...+|.|+.|+..|+..|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 346788999999999999999999998864
No 117
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=33.33 E-value=32 Score=20.82 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhc
Q 028526 155 KEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQ 195 (208)
Q Consensus 155 ~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQ 195 (208)
..+...+...|.. .+ ...+||..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 5555555554432 22 256789999999999999985
No 118
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=32.39 E-value=16 Score=24.05 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccchhhhhchhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRR 198 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (208)
..+||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998765
No 119
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=32.17 E-value=16 Score=22.98 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCccchhhhhchhhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRRA 199 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRRa 199 (208)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999987654
No 120
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=30.75 E-value=18 Score=23.09 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccchhhhhchhhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRRA 199 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRRa 199 (208)
..+||..+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 121
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=30.34 E-value=27 Score=26.07 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=32.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhh
Q 028526 158 SALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRA 199 (208)
Q Consensus 158 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRa 199 (208)
+..-...|....| . -....||+..|++...|-.+|.|+-.
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 4445556888888 5 67889999999999999999998743
No 122
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.51 E-value=49 Score=25.06 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=30.4
Q ss_pred CccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcc
Q 028526 150 KLRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNLRPR 188 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgLs~r 188 (208)
++.+|.+|+..|+..|.. +.+.+..+...+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 356889999999999874 457888888888888876544
No 123
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.28 E-value=1.1e+02 Score=22.67 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=30.1
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhch
Q 028526 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQN 196 (208)
..++.++...+...+... + ...++|..++++...|..|+..
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 357887776666666533 2 2457899999999999999864
No 124
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=29.15 E-value=54 Score=26.63 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=37.6
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
..+++.+..+|.-.+ ..+ .-.++|..+|++...|++..++-|.|.|..
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 458898988888764 333 256789999999999999998887777653
No 125
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.03 E-value=20 Score=22.83 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhchhhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRRA 199 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRRa 199 (208)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 126
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=28.83 E-value=76 Score=20.34 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=33.2
Q ss_pred ccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Cccc---hhhhhc
Q 028526 151 LRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNL--RPRQ---VEVWFQ 195 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgL--s~rq---VqvWFQ 195 (208)
..++.+++..|...|.. +.+.+..+...+...+|. +..+ |+.+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34678888889888864 457899998888888875 4445 666664
No 127
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=28.34 E-value=21 Score=22.85 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCccchhhhhchhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRR 198 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (208)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46789999999999999998764
No 128
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.19 E-value=66 Score=22.84 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=30.2
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhch
Q 028526 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQN 196 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQN 196 (208)
..++.++...+...+... . ...++|..+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 357777776666666432 2 2567899999999999999964
No 129
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=28.03 E-value=22 Score=22.79 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCccchhhhhchhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRR 198 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (208)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998764
No 130
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=27.67 E-value=21 Score=22.17 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCccchhhhhchhhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRRA 199 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRRa 199 (208)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999987654
No 131
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=26.78 E-value=61 Score=25.79 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=36.0
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhc
Q 028526 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFH 202 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~K 202 (208)
...+++.+..+|.-.++ .+ .-.+||..++++++.|+.+..|-+.|..
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 44699999999976542 22 2467899999999999999987776653
No 132
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=25.82 E-value=25 Score=22.45 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCccchhhhhchhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRR 198 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (208)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998876
No 133
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=25.73 E-value=24 Score=23.09 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccchhhhhchhhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRRA 199 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRRa 199 (208)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 357999999999999999987654
No 134
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.42 E-value=1.1e+02 Score=22.71 Aligned_cols=50 Identities=6% Similarity=-0.080 Sum_probs=32.6
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh-------CCCccchhhhhchhhh
Q 028526 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQL-------NLRPRQVEVWFQNRRA 199 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l-------gLs~rqVqvWFQNRRa 199 (208)
+..++.++...+...+..++..+..+........ .++...|..|+...+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 3456777778888777777767766554432222 4788889999865443
No 135
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=25.38 E-value=25 Score=22.14 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCccchhhhhchhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRR 198 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (208)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999998764
No 136
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=25.23 E-value=25 Score=23.88 Aligned_cols=24 Identities=13% Similarity=0.479 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhchhhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRRA 199 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRRa 199 (208)
..+||..+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 467899999999999999987653
No 137
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=24.82 E-value=63 Score=20.59 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=32.5
Q ss_pred ccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Cccchhhhhc
Q 028526 151 LRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNL--RPRQVEVWFQ 195 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgL--s~rqVqvWFQ 195 (208)
..++..+...|...|.. +.+.+..+...+...+|+ +..+|..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 35788889999999864 446788888887777774 4556666664
No 138
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=24.44 E-value=29 Score=23.06 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCccchhhhhchhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRR 198 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (208)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998876
No 139
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=23.86 E-value=50 Score=21.20 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhC-CCccchhhhhc
Q 028526 152 RLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLN-LRPRQVEVWFQ 195 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lg-Ls~rqVqvWFQ 195 (208)
.+++.+...|...|.. +.+.+..+...+...+| ++..+|+.+|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3567777777777753 34677777776666665 44555666553
No 140
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=23.48 E-value=30 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCccchhhhhchh
Q 028526 176 KQALARQLNLRPRQVEVWFQNR 197 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNR 197 (208)
..+||+.||++..-|-.|..++
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~ 34 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAG 34 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHhCC
Confidence 6789999999999999998654
No 141
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=23.26 E-value=23 Score=26.44 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhccc
Q 028526 152 RLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHFL 204 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk~ 204 (208)
.+++.+..+|.-.| .......+||..+|++...|+.+...-|.+.|+.
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~ 140 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQ 140 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 36666666665432 2223357899999999999999998777777654
No 142
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=23.08 E-value=80 Score=25.03 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=35.2
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhh
Q 028526 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASF 201 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~ 201 (208)
...+++.+..+|.-.+ ..+ .-.+||..+++++..|+...+|-+.|.
T Consensus 171 ~~~Lt~~e~~vl~~~~--~g~----s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA--VGK----TMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4569999999987643 222 356789999999999999988776664
No 143
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=22.98 E-value=1.1e+02 Score=21.43 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=35.3
Q ss_pred CCCccCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Cccchhhhhc
Q 028526 148 RKKLRLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNL--RPRQVEVWFQ 195 (208)
Q Consensus 148 r~Rt~fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgL--s~rqVqvWFQ 195 (208)
..+..++..++..|...|.. +.+.+..+...+...+++ +...|+..|.
T Consensus 12 ~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 66 (161)
T 3fwb_A 12 PLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLID 66 (161)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34567999999999999974 457888888888887775 4445665553
No 144
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=22.70 E-value=86 Score=20.30 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Cccchhhhhc
Q 028526 152 RLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNL--RPRQVEVWFQ 195 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgL--s~rqVqvWFQ 195 (208)
.++..++..|...|.. +.+.+..+...+...+|+ +..+|..+|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4788888999998864 457888888888888775 4556777664
No 145
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=22.67 E-value=95 Score=21.91 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=33.4
Q ss_pred CccCCHHHHHHHHHHHhh------CCCCCHHHHHHHHHHhCC--Cccchhhhhc
Q 028526 150 KLRLTKEQSALLEESFKQ------HSTLNPKQKQALARQLNL--RPRQVEVWFQ 195 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~------~~yPs~~~r~~LA~~lgL--s~rqVqvWFQ 195 (208)
-..++.+++..|...|.. +.+.+..+...+...+|+ +...|+.+|.
T Consensus 9 ~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 9 VEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345888899999988863 447888888888777774 4556666664
No 146
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=22.57 E-value=36 Score=22.31 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhchhhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRRA 199 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRRa 199 (208)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999987543
No 147
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=22.53 E-value=69 Score=22.72 Aligned_cols=50 Identities=10% Similarity=0.164 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 153 LTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 153 fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
+++.|..++.-.|-...+ ....-.++|..+|++...|+.+...-+.+.|+
T Consensus 20 Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 667777777777743211 11235678999999999999988766666554
No 148
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=21.68 E-value=47 Score=25.58 Aligned_cols=40 Identities=5% Similarity=0.088 Sum_probs=30.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhh
Q 028526 158 SALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRR 198 (208)
Q Consensus 158 l~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRR 198 (208)
+......|....|-.. ....||+..|++...|-..|.++-
T Consensus 36 l~aA~~lf~~~G~~~~-t~~~IA~~Agvs~~t~Y~~F~sKe 75 (230)
T 2iai_A 36 LSVAVQVFIERGYDGT-SMEHLSKAAGISKSSIYHHVTGKE 75 (230)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHTTTCSSHH
T ss_pred HHHHHHHHHHcCcccc-CHHHHHHHHCCChhHHHHhCCCHH
Confidence 5555666777776443 366789999999999999998874
No 149
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=21.60 E-value=34 Score=21.78 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCccchhhhh
Q 028526 176 KQALARQLNLRPRQVEVWF 194 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWF 194 (208)
..+||+.+|++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999998
No 150
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=21.57 E-value=84 Score=21.59 Aligned_cols=45 Identities=9% Similarity=-0.034 Sum_probs=28.7
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCC-------Cccchhhhhc
Q 028526 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNL-------RPRQVEVWFQ 195 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgL-------s~rqVqvWFQ 195 (208)
..++.++...+......++..+..+........|+ +...|..|+.
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 35677777777777776666666655443323374 7778888875
No 151
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=21.45 E-value=34 Score=22.17 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCccchhhhhchhhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRRA 199 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRRa 199 (208)
..+||..+|++...|..|..+++.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 152
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=21.20 E-value=60 Score=20.18 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Cccchhhhhc
Q 028526 153 LTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNL--RPRQVEVWFQ 195 (208)
Q Consensus 153 fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgL--s~rqVqvWFQ 195 (208)
++..+...|...|.. +.+.+..+...+...+|. +..+|+.+|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 356677778887753 446777777777777765 3445655553
No 153
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=20.96 E-value=34 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCccchhhhhchhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRR 198 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (208)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 35789999999999999998765
No 154
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=20.96 E-value=14 Score=27.81 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhhhhhcc
Q 028526 153 LTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRASFHF 203 (208)
Q Consensus 153 fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRRaK~Kk 203 (208)
+++.+..+|.-.|-... ...+||..+|++...|+.+...-|.+.|+
T Consensus 136 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDL-----THRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSCC-----SSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 56666666665543222 12467899999999999999877777665
No 155
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=20.91 E-value=1.2e+02 Score=21.57 Aligned_cols=45 Identities=4% Similarity=0.178 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC---Cccchhhhhch
Q 028526 152 RLTKEQSALLEESFKQ-----HSTLNPKQKQALARQLNL---RPRQVEVWFQN 196 (208)
Q Consensus 152 ~fs~~Ql~~Le~~F~~-----~~yPs~~~r~~LA~~lgL---s~rqVqvWFQN 196 (208)
.++..++..|...|.. +.+.+..+...+...+|+ +..+|..+|.+
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 70 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE 70 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 5788899999999874 457888888888888876 45566666653
No 156
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=20.91 E-value=18 Score=20.15 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=9.0
Q ss_pred chhhhhhccccc
Q 028526 195 QNRRASFHFLQD 206 (208)
Q Consensus 195 QNRRaK~Kk~q~ 206 (208)
.|||.+||.+|.
T Consensus 7 RnRRRRWR~Rq~ 18 (26)
T 1etf_B 7 RNRRRRWRERQR 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 488888887664
No 157
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=20.91 E-value=45 Score=21.57 Aligned_cols=41 Identities=5% Similarity=0.026 Sum_probs=31.4
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCccchhhhhchhh
Q 028526 151 LRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRR 198 (208)
Q Consensus 151 t~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~lgLs~rqVqvWFQNRR 198 (208)
..++.+.+..+..... .+ ..+||..+|++...|..|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~g----lt---q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLS----LT---QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTT----CC---HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcC----CC---HHHHHHHhCcCHHHHHHHHcCCC
Confidence 3578888877766533 22 46789999999999999998765
No 158
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.59 E-value=33 Score=22.16 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCccchhhhhchhh
Q 028526 176 KQALARQLNLRPRQVEVWFQNRR 198 (208)
Q Consensus 176 r~~LA~~lgLs~rqVqvWFQNRR 198 (208)
..+||..+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45799999999999999998764
No 159
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.26 E-value=2.1e+02 Score=20.59 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=31.8
Q ss_pred CccCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh-----C--CCccchhhhhchh
Q 028526 150 KLRLTKEQSALLEESFKQHSTLNPKQKQALARQL-----N--LRPRQVEVWFQNR 197 (208)
Q Consensus 150 Rt~fs~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l-----g--Ls~rqVqvWFQNR 197 (208)
+..++.++...+...+..++..+..+........ | ++...|..|+..+
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 3457888888888888777766665543322111 5 6788899988643
Done!