BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028527
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4U4D2|OPN4_PODSI Melanopsin OS=Podarcis sicula GN=OPN4 PE=2 SV=2
Length = 475
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 42 QMRLSYSPFAPLVLFMIEWMDYSCTDTVPSYLGLLNILVYKVYVDGMPALSSKERKATLR 101
+ +L+ F +V+F++ W Y+C T+ ++ G L Y +PA+ +K
Sbjct: 235 EWKLAKIAFVAIVVFVLSWSPYACV-TLIAWAGYAKTL--NPYSKSVPAVIAKASAIYNP 291
Query: 102 EFYAIIYPSLRQ 113
YAII+P R+
Sbjct: 292 IIYAIIHPRYRR 303
>sp|Q804X9|OPN4A_GADMO Melanopsin-A OS=Gadus morhua GN=opn4a PE=2 SV=1
Length = 561
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 42 QMRLSYSPFAPLVLFMIEWMDYSCTDTVPSYLGLLNILVYKVYVDGMPALSSKERKATLR 101
+ +L+ F +V++++ W Y+C T+ S+ G NIL Y +PA+ +K
Sbjct: 250 EWKLAKIAFVVIVVYVLSWSPYACV-TMISWSGHANIL--SPYSKTVPAVIAKASTIYNP 306
Query: 102 EFYAIIYPSLRQ 113
YAII+ R+
Sbjct: 307 FIYAIIHQKYRK 318
>sp|A5UH08|RBSD_HAEIG D-ribose pyranase OS=Haemophilus influenzae (strain PittGG) GN=rbsD
PE=3 SV=1
Length = 139
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 58 IEWMDYSCTDTVPSYLGLLNILVYKVYVDGMPALSSKERKATLREFYAIIYPSLRQLES 116
+E +D + T VPS+L LN++ ++YV+ + + ++E K E + L+QLES
Sbjct: 37 VERIDLALTAGVPSFLQTLNVVTNEMYVERV--VIAEEIKEKNPEILTALLTQLQQLES 93
>sp|A5U9Z0|RBSD_HAEIE D-ribose pyranase OS=Haemophilus influenzae (strain PittEE) GN=rbsD
PE=3 SV=1
Length = 139
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 58 IEWMDYSCTDTVPSYLGLLNILVYKVYVDGMPALSSKERKATLREFYAIIYPSLRQLES 116
+E +D + T VPS+L LN++ ++YV+ + + ++E K E + L+QLES
Sbjct: 37 VERIDLALTAGVPSFLQTLNVVTNEMYVERV--VIAEEIKEKNPEILTALLTQLQQLES 93
>sp|Q4QN45|RBSD_HAEI8 D-ribose pyranase OS=Haemophilus influenzae (strain 86-028NP)
GN=rbsD PE=3 SV=1
Length = 139
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 58 IEWMDYSCTDTVPSYLGLLNILVYKVYVDGMPALSSKERKATLREFYAIIYPSLRQLES 116
+E +D + T VPS+L LN++ ++YV+ + + ++E K E + L+QLES
Sbjct: 37 VERIDLALTAGVPSFLQTLNVVTNEMYVERV--VIAEEIKEKNPEILTALLTQLQQLES 93
>sp|P08066|DHSB_BACSU Succinate dehydrogenase iron-sulfur subunit OS=Bacillus subtilis
(strain 168) GN=sdhB PE=3 SV=3
Length = 253
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 108 YPSLRQLESEFSELEDNSKR-------DQCSEISSRKRVEERRKLSDKDLDRNDECGICM 160
+P +R L+ + S + D+ K+ D ++ R+ E+R+ +L + CG+C+
Sbjct: 103 FPVVRDLQVDRSRMFDSLKKVKAWIPIDGTYDLGPGPRMPEKRRQWAYELSKCMTCGVCL 162
Query: 161 ENCTKMVTRKHF 172
E C + ++ F
Sbjct: 163 EACPNVNSKSKF 174
>sp|A1AM15|SECA_PELPD Protein translocase subunit SecA OS=Pelobacter propionicus (strain
DSM 2379) GN=secA PE=3 SV=1
Length = 896
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 107 IYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDECGICMENCTKM 166
I + +LE+ S L D RD+ +E R K D + +C E ++
Sbjct: 24 IVARINELEASISPLSDEQLRDKTAEFKER-----HGKGESLDALMPEAFAVCREASKRV 78
Query: 167 VTRKHFSLERIPDKYFSHNGLIMNYRNARSQSCLFAVAAY 206
+ +HF ++ I H+G I + ++ + + AY
Sbjct: 79 LGMRHFDVQLIGGMVL-HSGKISEMKTGEGKTLVATLPAY 117
>sp|P49824|MYH7_CANFA Myosin-7 OS=Canis familiaris GN=MYH7 PE=1 SV=3
Length = 1935
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 55 LFMIEWMDYSCTDTVPSYLGLLNILVYKVYVDGMPALSSKERK---ATLREFYAIIYPSL 111
L +I+W + +++G+ N K+Y P L S E + AT++E +A I +L
Sbjct: 811 LLIIQW-------NIRAFMGVKNWPWMKLYFKIKPLLKSAETEKEMATMKEEFARIKEAL 863
Query: 112 RQLESEFSELED 123
+ E+ ELE+
Sbjct: 864 EKSEARRKELEE 875
>sp|Q0AH18|SECA_NITEC Protein translocase subunit SecA OS=Nitrosomonas eutropha (strain
C91) GN=secA PE=3 SV=1
Length = 909
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 96 RKATLREFYAIIYPSLRQLESEFSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDE 155
R L + Y+ I ++ +LE+ S L D RD+ SE ++R+ KL D+ L +
Sbjct: 13 RNDRLVKQYSRIVRTINELEAVISPLSDEELRDKTSEF--KQRISNGEKL-DQLLP--EA 67
Query: 156 CGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARSQSCLFAVAAY 206
+ E +++ +HF ++ I H G I R ++ + + Y
Sbjct: 68 FAVVREASKRVLGMRHFDVQLIGGMVL-HEGKIAEMRTGEGKTLMATLPIY 117
>sp|B3EA24|GATA_GEOLS Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter lovleyi
(strain ATCC BAA-1151 / DSM 17278 / SZ) GN=gatA PE=3
SV=1
Length = 485
Score = 30.4 bits (67), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 15 LKALEADIQHANTLAAALPRDYGGDFVQMRLSYSPFAPLVLFMI 58
+ L+AD+Q A A A+ R G +FV++ L ++ +A ++I
Sbjct: 268 IDGLDADVQQAMEQAIAVYRQLGAEFVEVSLPHTNYAVATYYLI 311
>sp|P04461|MYH7_RABIT Myosin-7 (Fragment) OS=Oryctolagus cuniculus GN=MYH7 PE=2 SV=1
Length = 736
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 55 LFMIEWMDYSCTDTVPSYLGLLNILVYKVYVDGMPALSSKERK---ATLREFYAIIYPSL 111
L +I+W + +++G+ N K+Y P L S E + AT++E +A + +L
Sbjct: 375 LLIIQW-------NIRAFMGVKNWPWMKLYFKIKPLLKSAETEKEMATMKEEFARVKEAL 427
Query: 112 RQLESEFSELEDNS 125
+ E+ ELE+ +
Sbjct: 428 EKSEARRKELEEKT 441
>sp|P44734|RBSD_HAEIN D-ribose pyranase OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=rbsD PE=3 SV=1
Length = 139
Score = 30.4 bits (67), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 58 IEWMDYSCTDTVPSYLGLLNILVYKVYVDGMPALSSKERKATLREFYAIIYPSLRQLESE 117
+E +D + T VPS+L LN++ ++YV+ + + ++E K E + L++LES
Sbjct: 37 VERIDLALTAGVPSFLQTLNVVTNEMYVERV--VIAEEIKEKNPEILTALLTQLQKLESH 94
Query: 118 FSELEDNSKRDQCSEISSRKRVEERRKLSDKDLDRNDEC 156
+ Q +S ++ L K + R EC
Sbjct: 95 ------QGNQIQVEFVSHETF--KKFTLESKAIVRTGEC 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,739,063
Number of Sequences: 539616
Number of extensions: 2815954
Number of successful extensions: 9463
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 9454
Number of HSP's gapped (non-prelim): 38
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)