Query 028527
Match_columns 208
No_of_seqs 117 out of 144
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 21:33:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ayc_A E3 ubiquitin-protein li 99.0 1.5E-10 5E-15 89.4 3.3 45 152-207 52-98 (138)
2 1iym_A EL5; ring-H2 finger, ub 99.0 1.8E-10 6E-15 75.0 2.4 49 151-206 3-53 (55)
3 3ng2_A RNF4, snurf, ring finge 98.9 2.1E-10 7.2E-15 77.7 1.8 49 148-207 5-62 (71)
4 2ea6_A Ring finger protein 4; 98.9 2.4E-10 8.3E-15 76.5 2.0 48 149-207 11-67 (69)
5 2ecn_A Ring finger protein 141 98.9 6E-10 2E-14 75.8 3.3 46 150-207 12-59 (70)
6 1chc_A Equine herpes virus-1 r 98.8 1.5E-09 5.2E-14 73.2 2.8 46 151-207 3-51 (68)
7 2djb_A Polycomb group ring fin 98.8 1.2E-09 4.2E-14 75.2 2.3 48 150-207 12-61 (72)
8 2kiz_A E3 ubiquitin-protein li 98.8 2.1E-09 7.2E-14 72.9 3.3 48 149-207 10-62 (69)
9 2d8t_A Dactylidin, ring finger 98.8 1.6E-09 5.6E-14 74.4 2.6 47 150-207 12-60 (71)
10 2ecm_A Ring finger and CHY zin 98.8 1.5E-09 5.1E-14 70.4 2.3 46 151-207 3-54 (55)
11 2ysl_A Tripartite motif-contai 98.8 2E-09 6.9E-14 73.3 3.0 48 149-207 16-68 (73)
12 2xeu_A Ring finger protein 4; 98.8 8.9E-10 3E-14 72.8 1.2 45 152-207 2-55 (64)
13 1v87_A Deltex protein 2; ring- 98.8 1.6E-09 5.4E-14 79.9 2.6 59 147-207 19-93 (114)
14 3ztg_A E3 ubiquitin-protein li 98.8 2E-09 6.9E-14 76.7 2.9 49 148-206 8-60 (92)
15 2csy_A Zinc finger protein 183 98.8 2.5E-09 8.5E-14 75.0 3.0 48 149-207 11-60 (81)
16 2ep4_A Ring finger protein 24; 98.8 1.9E-09 6.3E-14 74.1 2.1 51 149-207 11-63 (74)
17 2ecl_A Ring-box protein 2; RNF 98.8 2.1E-09 7.1E-14 76.7 2.2 54 152-207 14-75 (81)
18 2ct2_A Tripartite motif protei 98.8 2.6E-09 9E-14 74.7 2.3 49 148-207 10-67 (88)
19 2egp_A Tripartite motif-contai 98.7 3.5E-09 1.2E-13 72.9 2.6 48 149-207 8-64 (79)
20 2yur_A Retinoblastoma-binding 98.7 2.6E-09 9E-14 74.3 1.8 48 149-206 11-62 (74)
21 1x4j_A Ring finger protein 38; 98.7 2.6E-09 9E-14 73.9 1.7 46 151-207 21-71 (75)
22 2ecw_A Tripartite motif-contai 98.7 5.2E-09 1.8E-13 72.1 3.1 47 150-207 16-70 (85)
23 1g25_A CDK-activating kinase a 98.7 3.1E-09 1.1E-13 71.7 1.9 45 152-207 2-54 (65)
24 2ecy_A TNF receptor-associated 98.7 3.7E-09 1.3E-13 71.5 2.1 48 149-207 11-61 (66)
25 2ecj_A Tripartite motif-contai 98.7 5.4E-09 1.9E-13 68.1 2.7 43 149-202 11-58 (58)
26 2l0b_A E3 ubiquitin-protein li 98.7 4.4E-09 1.5E-13 76.1 2.2 46 151-207 38-88 (91)
27 2ckl_A Polycomb group ring fin 98.7 2.5E-09 8.7E-14 78.7 0.9 49 149-207 11-61 (108)
28 2ecv_A Tripartite motif-contai 98.7 6.3E-09 2.1E-13 71.7 2.6 48 149-207 15-70 (85)
29 2ect_A Ring finger protein 126 98.7 5.9E-09 2E-13 72.2 2.5 51 149-207 11-63 (78)
30 2y43_A E3 ubiquitin-protein li 98.7 3.1E-09 1.1E-13 77.0 0.5 46 152-207 21-68 (99)
31 4ap4_A E3 ubiquitin ligase RNF 98.6 5.4E-09 1.9E-13 77.0 1.3 46 151-207 5-59 (133)
32 3fl2_A E3 ubiquitin-protein li 98.6 5E-09 1.7E-13 78.9 0.5 46 151-207 50-98 (124)
33 4ic3_A E3 ubiquitin-protein li 98.6 4.6E-09 1.6E-13 73.7 0.1 43 152-207 23-66 (74)
34 1e4u_A Transcriptional repress 98.6 1.9E-08 6.6E-13 72.5 3.2 50 149-207 7-61 (78)
35 3l11_A E3 ubiquitin-protein li 98.6 6.6E-09 2.2E-13 77.1 0.6 44 152-206 14-60 (115)
36 2ysj_A Tripartite motif-contai 98.6 1.9E-08 6.6E-13 67.2 2.7 43 149-202 16-63 (63)
37 3lrq_A E3 ubiquitin-protein li 98.6 8.3E-09 2.9E-13 75.7 0.5 47 151-207 20-69 (100)
38 1t1h_A Gspef-atpub14, armadill 98.6 2.4E-08 8.2E-13 69.1 2.5 49 148-207 3-54 (78)
39 2vje_A E3 ubiquitin-protein li 98.5 1.6E-08 5.6E-13 69.6 0.9 47 151-207 6-56 (64)
40 2ckl_B Ubiquitin ligase protei 98.5 1.2E-08 3.9E-13 80.3 0.1 45 152-206 53-100 (165)
41 1jm7_B BARD1, BRCA1-associated 98.5 1.4E-08 4.7E-13 76.1 0.5 46 152-207 21-66 (117)
42 2y1n_A E3 ubiquitin-protein li 98.5 2.7E-08 9.2E-13 91.3 2.4 46 151-207 330-378 (389)
43 4ap4_A E3 ubiquitin ligase RNF 98.5 1.8E-08 6.1E-13 74.2 0.9 46 151-207 70-124 (133)
44 2ea5_A Cell growth regulator w 98.5 6.2E-08 2.1E-12 67.8 3.5 46 149-207 11-57 (68)
45 1bor_A Transcription factor PM 98.5 3.1E-08 1.1E-12 66.1 1.6 45 151-207 4-48 (56)
46 1jm7_A BRCA1, breast cancer ty 98.5 2.9E-08 1E-12 72.3 1.4 45 152-207 20-69 (112)
47 2ecg_A Baculoviral IAP repeat- 98.4 1.9E-08 6.4E-13 70.4 -0.4 43 152-207 24-67 (75)
48 2vje_B MDM4 protein; proto-onc 98.4 4.1E-08 1.4E-12 67.3 0.9 47 151-207 5-55 (63)
49 3dpl_R Ring-box protein 1; ubi 98.4 7.1E-08 2.4E-12 73.3 1.9 53 152-206 36-99 (106)
50 2yho_A E3 ubiquitin-protein li 98.4 3.7E-08 1.3E-12 70.6 0.1 43 152-207 17-60 (79)
51 1rmd_A RAG1; V(D)J recombinati 98.3 5.1E-08 1.7E-12 72.4 -0.7 45 152-207 22-69 (116)
52 3hct_A TNF receptor-associated 98.3 2.1E-07 7.1E-12 69.8 2.5 48 149-207 14-64 (118)
53 1z6u_A NP95-like ring finger p 98.3 1.1E-07 3.7E-12 75.3 0.7 46 151-207 76-124 (150)
54 3knv_A TNF receptor-associated 98.3 2E-07 6.8E-12 73.2 2.1 48 148-206 26-76 (141)
55 4a0k_B E3 ubiquitin-protein li 98.2 1.6E-07 5.4E-12 73.2 0.3 53 152-206 47-110 (117)
56 2c2l_A CHIP, carboxy terminus 98.2 6E-07 2.1E-11 73.3 2.9 48 149-207 204-254 (281)
57 3t6p_A Baculoviral IAP repeat- 98.1 4.8E-07 1.6E-11 81.1 0.5 44 151-207 293-337 (345)
58 2kr4_A Ubiquitin conjugation f 98.1 1.4E-06 4.9E-11 62.7 2.4 48 149-207 10-59 (85)
59 3hcs_A TNF receptor-associated 98.0 1.6E-06 5.6E-11 68.1 2.3 48 149-207 14-64 (170)
60 1wgm_A Ubiquitin conjugation f 97.9 4.2E-06 1.4E-10 62.2 3.1 48 149-207 18-68 (98)
61 2kre_A Ubiquitin conjugation f 97.9 3.2E-06 1.1E-10 63.1 2.2 48 149-207 25-74 (100)
62 1wim_A KIAA0161 protein; ring 97.8 2.4E-06 8.2E-11 61.6 0.0 46 152-205 4-61 (94)
63 2d8s_A Cellular modulator of i 97.8 7.1E-06 2.4E-10 59.5 2.5 46 151-207 13-69 (80)
64 2yu4_A E3 SUMO-protein ligase 97.6 1.9E-05 6.5E-10 57.5 1.3 45 151-205 5-59 (94)
65 2ct0_A Non-SMC element 1 homol 97.4 6.3E-05 2.2E-09 54.5 2.8 46 151-206 13-62 (74)
66 2f42_A STIP1 homology and U-bo 97.4 8.7E-05 3E-09 61.5 3.2 49 148-207 101-152 (179)
67 3k1l_B Fancl; UBC, ring, RWD, 97.3 5.4E-05 1.8E-09 69.9 0.9 48 151-206 306-371 (381)
68 3htk_C E3 SUMO-protein ligase 96.9 0.0003 1E-08 62.1 1.9 46 152-207 180-231 (267)
69 1vyx_A ORF K3, K3RING; zinc-bi 96.6 0.00092 3.1E-08 46.0 2.3 49 150-207 3-58 (60)
70 3vk6_A E3 ubiquitin-protein li 96.1 0.00066 2.3E-08 52.7 -0.7 26 182-207 20-48 (101)
71 2bay_A PRE-mRNA splicing facto 96.1 0.0016 5.5E-08 44.7 1.1 44 154-207 4-49 (61)
72 3nw0_A Non-structural maintena 94.0 0.03 1E-06 47.6 3.0 45 152-206 179-227 (238)
73 1weo_A Cellulose synthase, cat 90.1 0.17 6E-06 38.8 2.7 53 152-208 15-70 (93)
74 2jun_A Midline-1; B-BOX, TRIM, 88.8 0.18 6.2E-06 36.0 1.9 32 153-193 3-35 (101)
75 2ko5_A Ring finger protein Z; 79.1 0.78 2.7E-05 35.5 1.7 42 153-206 28-71 (99)
76 2lbm_A Transcriptional regulat 68.5 4.5 0.00015 32.4 3.7 44 150-204 60-116 (142)
77 3ql9_A Transcriptional regulat 58.3 8.9 0.0003 30.3 3.6 44 150-204 54-110 (129)
78 2l5u_A Chromodomain-helicase-D 58.1 9 0.00031 25.8 3.2 48 146-204 4-57 (61)
79 2jmo_A Parkin; IBR, E3 ligase, 55.2 2.9 9.8E-05 29.7 0.3 20 182-201 56-75 (80)
80 1co4_A AMT1, protein (activato 51.7 2.8 9.4E-05 28.0 -0.2 16 186-201 10-25 (42)
81 1z60_A TFIIH basal transcripti 46.5 8.5 0.00029 26.8 1.6 40 154-202 16-58 (59)
82 2lri_C Autoimmune regulator; Z 43.9 17 0.0006 25.1 2.9 43 152-205 11-59 (66)
83 2ku3_A Bromodomain-containing 40.9 22 0.00077 24.9 3.1 46 150-205 13-66 (71)
84 2l43_A N-teminal domain from h 34.8 36 0.0012 24.6 3.5 46 150-205 22-75 (88)
85 3a1b_A DNA (cytosine-5)-methyl 34.5 31 0.0011 28.3 3.4 33 151-192 77-109 (159)
86 2ct7_A Ring finger protein 31; 32.3 7.1 0.00024 27.8 -0.7 22 178-201 47-72 (86)
87 1mm2_A MI2-beta; PHD, zinc fin 31.7 22 0.00074 23.9 1.7 44 151-205 7-56 (61)
88 2yql_A PHD finger protein 21A; 31.6 21 0.00073 23.4 1.6 44 150-204 6-55 (56)
89 1xwh_A Autoimmune regulator; P 31.1 26 0.00088 23.8 2.1 43 151-204 6-54 (66)
90 2e6r_A Jumonji/ARID domain-con 28.9 24 0.00082 25.7 1.7 50 146-205 9-66 (92)
91 2k16_A Transcription initiatio 26.9 36 0.0012 23.2 2.2 46 152-207 17-70 (75)
92 2fdn_A Ferredoxin; electron tr 26.8 35 0.0012 20.8 2.0 16 153-168 8-23 (55)
93 2puy_A PHD finger protein 21A; 26.7 38 0.0013 22.4 2.2 43 152-205 4-52 (60)
94 2pv0_B DNA (cytosine-5)-methyl 25.2 51 0.0017 30.3 3.5 38 146-192 85-123 (386)
95 1bc6_A 7-Fe ferredoxin; electr 23.6 27 0.00092 22.9 1.0 13 156-168 13-25 (77)
96 1fp0_A KAP-1 corepressor; PHD 23.0 35 0.0012 25.2 1.7 47 148-205 20-72 (88)
97 3h3h_A Uncharacterized snoal-l 21.7 41 0.0014 23.5 1.7 21 87-107 1-21 (122)
98 1wev_A Riken cDNA 1110020M19; 21.2 24 0.00083 25.4 0.4 47 151-207 14-74 (88)
No 1
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.00 E-value=1.5e-10 Score=89.35 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=37.3
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
.+..|.||++.-...|. -+ |+|+||..||..| ++.+||+||.++.
T Consensus 52 ~~~~C~iC~~~~~~~~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVT---------LN--CAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSEEE---------ET--TSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCceE---------CC--CCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45689999998777666 34 9999999999977 4578999998874
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.97 E-value=1.8e-10 Score=74.98 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=36.7
Q ss_pred CCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhcc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAY 206 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~ 206 (208)
+.+.+|.||+|..... .....+|+ |+|.||..|+.+| ++.+||.||..+
T Consensus 3 ~~~~~C~IC~~~~~~~-----~~~~~~~~--C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDG-----EEARFLPR--CGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTT-----SCCEECSS--SCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCcCccCCccccCC-----CceEECCC--CCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 5678999999875330 00112477 9999999999977 467999999875
No 3
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.94 E-value=2.1e-10 Score=77.65 Aligned_cols=49 Identities=16% Similarity=0.313 Sum_probs=38.2
Q ss_pred cccCCCCccccccccccce-------eeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 148 KDLDRNDECGICMENCTKM-------VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 148 id~~~d~eCgICME~~~k~-------V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
...+.+.+|.||+|..... +. .+ |+|.||..|+..| ++.+||.||..+.
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVS---------TE--CGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEE---------CT--TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEe---------CC--CCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 3445778999999985442 33 45 9999999999977 4689999999875
No 4
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2.4e-10 Score=76.53 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=37.9
Q ss_pred ccCCCCccccccccccce-------eeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKM-------VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~-------V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
..+.+.+|.||++..... ++ .+ |+|.||..|+..| .+.+||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVS---------TE--CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEE---------CS--SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEe---------CC--CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 345678999999975442 33 35 9999999999987 4679999999875
No 5
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=6e-10 Score=75.82 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=37.9
Q ss_pred cCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 150 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 150 ~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
.+.+.+|.||++....+++ + |+|.||..|+..| ++.+||.||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~----------~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 12 LTDEEECCICMDGRADLIL----------P--CAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCSSSCCSCCSEEE----------T--TTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCCCeeCCcCccCccc----------C--CCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 4567899999998766333 4 9999999999987 5689999998875
No 6
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.82 E-value=1.5e-09 Score=73.21 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=36.7
Q ss_pred CCCCccccccccccce-eeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 151 DRNDECGICMENCTKM-VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k~-V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
+.+.+|.||++..... +. .+ |+|.||..|+.+| ++.+||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~---------~~--C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMA---------LP--CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEE---------TT--TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEe---------cC--CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3568999999986542 43 35 9999999999977 4689999998764
No 7
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.2e-09 Score=75.21 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=38.6
Q ss_pred cCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc--cCCChhhhhccc
Q 028527 150 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--SQSCLFAVAAYR 207 (208)
Q Consensus 150 ~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R--SkSCP~CR~~~~ 207 (208)
++.+.+|.||++...+.|. +.+ |.|.||..||..|- +..||.||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~--------~~~--CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATT--------ITE--CLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEE--------CSS--SCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred cCCCCCCCCCChHHHCcCE--------ECC--CCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 4467899999998765554 346 99999999999774 679999998874
No 8
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.81 E-value=2.1e-09 Score=72.91 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=36.3
Q ss_pred ccCCCCcccccccccc---ceeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCT---KMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~---k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
+.+.+.+|.||++... ..+. + + |+|.||..|+..| ++.+||.||..+.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~--------~-~--C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRR--------L-P--CMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEE--------C-T--TSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred cCCCCCCCeeCCccccCCCcEEE--------e-C--CCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3456789999998642 2222 2 4 9999999999987 4678999998864
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1.6e-09 Score=74.39 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=37.9
Q ss_pred cCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 150 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 150 ~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
.+.+.+|.||++...+.|. -+ |.|.||..|+..| ....||.||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~---------~~--CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVS---------LP--CKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEE---------ET--TTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCCEE---------cc--CCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 3456899999998766555 24 9999999999976 4578999998864
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.80 E-value=1.5e-09 Score=70.35 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=35.9
Q ss_pred CCCCccccccccccc----eeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 151 DRNDECGICMENCTK----MVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k----~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
+.+.+|.||+|.... .+. .+ |.|.||..|+..| .+.+||.||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHV---------LP--CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEE---------CT--TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEe---------cC--CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356899999997522 333 45 9999999999977 3588999998763
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2e-09 Score=73.33 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=39.0
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc-----cCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR-----SQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R-----SkSCP~CR~~~~ 207 (208)
+++.+.+|.||++...+.|. -+ |+|.||..|+..|- ...||.||..+.
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVT---------ID--CGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEE---------CT--TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred hCccCCEeccCCcccCCeEE---------cC--CCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 35577899999998777666 35 99999999999774 348999999875
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.80 E-value=8.9e-10 Score=72.78 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=35.6
Q ss_pred CCCccccccccccce-------eeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 152 RNDECGICMENCTKM-------VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME~~~k~-------V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
.+.+|+||++...+. +. .+ |+|.||..|+..| ++.+||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVS---------TE--CGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEE---------ET--TSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEe---------CC--CCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 467999999975432 33 35 9999999999977 4679999999875
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.80 E-value=1.6e-09 Score=79.92 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=38.8
Q ss_pred ccccCCCCccccccccccceeeec---------ccccccCCCCCCCchhhhhHHhccc-------cCCChhhhhccc
Q 028527 147 DKDLDRNDECGICMENCTKMVTRK---------HFSLERIPDKYFSHNGLIMNYRNAR-------SQSCLFAVAAYR 207 (208)
Q Consensus 147 ~id~~~d~eCgICME~~~k~V~~k---------~~~~~~Lpn~~C~H~fCl~Cir~~R-------SkSCP~CR~~~~ 207 (208)
.+....+++|.||||.-...+... ......+.. |+|.||..||..|- +.+||.||..+.
T Consensus 19 ~~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 19 ELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK--CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp ECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS--SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred hccCCCCCcCccCChhhcCcccccccccccccCcccceecCC--CCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 344456789999999853322100 000001245 99999999999875 569999998764
No 14
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.80 E-value=2e-09 Score=76.66 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=39.3
Q ss_pred cccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc----cCCChhhhhcc
Q 028527 148 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR----SQSCLFAVAAY 206 (208)
Q Consensus 148 id~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R----SkSCP~CR~~~ 206 (208)
.+++.+..|+||++.-.+.|. +|. |+|+||..||..|- ..+||.||..+
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~--------~~~--CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVV--------IPC--CGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEE--------CTT--TCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred ccCCcCCCCCCCChhhcCceE--------CCC--CCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 345677899999998766555 477 99999999999662 35999999875
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.5e-09 Score=74.98 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=38.6
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
+.+.+.+|.||++.....|+ .+ |.|.||..|+..| ...+||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVV---------TK--CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEE---------CT--TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeE---------cc--CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34456799999998766665 45 9999999999977 4578999998753
No 16
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.9e-09 Score=74.08 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=36.8
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
+.+.+.+|.||+|....... ...+| |+|.||..||..| ...+||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~-----~~~~~---C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDE-----LGICP---CKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSC-----EEEET---TTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred cCCCCCCCcCCCcccCCCCc-----EEEcC---CCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 44567899999987422111 01124 9999999999977 4579999998874
No 17
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.1e-09 Score=76.66 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=36.3
Q ss_pred CCCccccccccccce---eeec---ccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 152 RNDECGICMENCTKM---VTRK---HFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME~~~k~---V~~k---~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
.+++|+||++..... =++. ......+++ |+|.|+..||.+| ++++||.||.++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~--C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGE--CNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEET--TSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCC--CCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 467899999874321 0000 000112477 9999999999988 5689999998864
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2.6e-09 Score=74.68 Aligned_cols=49 Identities=24% Similarity=0.275 Sum_probs=37.8
Q ss_pred cccCCCCccccccccccc----eeeecccccccCCCCCCCchhhhhHHhccc-----cCCChhhhhccc
Q 028527 148 KDLDRNDECGICMENCTK----MVTRKHFSLERIPDKYFSHNGLIMNYRNAR-----SQSCLFAVAAYR 207 (208)
Q Consensus 148 id~~~d~eCgICME~~~k----~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R-----SkSCP~CR~~~~ 207 (208)
.+++.+.+|.||++.-.. .+. -. |.|.||..|+.+|- ...||+||..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKL---------LH--CGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEE---------CS--SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEE---------CC--CCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 345567899999998654 444 34 99999999999773 268999998764
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.74 E-value=3.5e-09 Score=72.90 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=37.7
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc---------cCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---------SQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R---------SkSCP~CR~~~~ 207 (208)
+++.+.+|.||++...+.+. + + |+|+||..|+.+|- ...||.||..+.
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~--------l-~--CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLS--------L-D--CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTEECSSCCC--------C-S--SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCcccCCeeE--------C-C--CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 45577899999998655444 2 4 99999999999653 458999998764
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.73 E-value=2.6e-09 Score=74.25 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=38.5
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcccc----CCChhhhhcc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS----QSCLFAVAAY 206 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~RS----kSCP~CR~~~ 206 (208)
++..+..|.||++.-.+.|. +++ |.|+||..||..|-. .+||.||..+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~--------~~~--CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVV--------IPC--CGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEE--------CSS--SCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred cCCCCCCCcCCChHHhCCeE--------cCC--CCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 34567899999998766555 477 999999999997642 5899999874
No 21
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=2.6e-09 Score=73.86 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=35.7
Q ss_pred CCCCccccccccccce---eeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 151 DRNDECGICMENCTKM---VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k~---V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
+.+.+|.||+|..... +. +| |+|.||..|+..| ++.+||.||..+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~--------l~---C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRV--------LP---CNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEE--------ET---TTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEE--------EC---CCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 4668999999874221 22 24 9999999999988 5689999998764
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.73 E-value=5.2e-09 Score=72.11 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=37.6
Q ss_pred cCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc--------cCCChhhhhccc
Q 028527 150 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--------SQSCLFAVAAYR 207 (208)
Q Consensus 150 ~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R--------SkSCP~CR~~~~ 207 (208)
++.+.+|.||++...+.+. -+ |.|.||..|+..|- ...||.||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVS---------AD--CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEE---------CT--TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCccee---------CC--CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 4567899999998766555 34 99999999999552 568999998764
No 23
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=3.1e-09 Score=71.71 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=34.3
Q ss_pred CCCccccccc-cccce----eeecccccccCCCCCCCchhhhhHHhcc---ccCCChhhhhccc
Q 028527 152 RNDECGICME-NCTKM----VTRKHFSLERIPDKYFSHNGLIMNYRNA---RSQSCLFAVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME-~~~k~----V~~k~~~~~~Lpn~~C~H~fCl~Cir~~---RSkSCP~CR~~~~ 207 (208)
++..|.||++ .-.+. ++ .+ |+|+||..|+.+| .+.+||.||..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMV---------NV--CGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEE---------CT--TCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeec---------CC--CCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 3578999999 32221 33 35 9999999999977 4578999999875
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=3.7e-09 Score=71.49 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=38.2
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc---cCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R---SkSCP~CR~~~~ 207 (208)
++..+.+|.||++...+.|. -+ |+|.||..|+..|- ...||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQ---------TE--CGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp SCCCCEECTTTCCEESSCCC---------CS--SSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred cCCcCCCCCCCChHhcCeeE---------CC--CCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 34567899999998655554 34 99999999999774 468999999875
No 25
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=5.4e-09 Score=68.13 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=34.8
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc-----ccCCChhh
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-----RSQSCLFA 202 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-----RSkSCP~C 202 (208)
+++.+.+|.||++...+.+. -+ |.|.||..|+..| +..+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVI---------IE--CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCC---------CS--SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEe---------CC--CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999998766554 34 9999999999988 56799998
No 26
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.70 E-value=4.4e-09 Score=76.05 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=35.5
Q ss_pred CCCCccccccccccc---eeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 151 DRNDECGICMENCTK---MVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k---~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
+.+.+|.|||+.... .+. +| |+|.||..||..| ++.+||.||..+.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~--------l~---C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATE--------LP---CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEE--------ET---TTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEe--------cC---CCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 456789999987432 222 24 9999999999987 4579999998764
No 27
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.70 E-value=2.5e-09 Score=78.74 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=39.1
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc--cCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--SQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R--SkSCP~CR~~~~ 207 (208)
+++.+..|.||++.-.+.|. +.+ |+|+||..||..|- +.+||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~--------~~~--CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATT--------IIE--CLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEE--------ETT--TCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred ccCCcCCCccCChHHhCcCE--------eCC--CCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 34567899999998766655 346 99999999999773 579999998764
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=6.3e-09 Score=71.70 Aligned_cols=48 Identities=21% Similarity=0.355 Sum_probs=37.8
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc--------ccCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--------RSQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--------RSkSCP~CR~~~~ 207 (208)
++..+.+|.||++...+.+. -+ |.|.||..|+..| +...||.||..+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLS---------LD--CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBC---------CS--SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HccCCCCCCCCCcccCCcee---------CC--CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34567899999998665544 24 9999999999965 2578999998764
No 29
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.69 E-value=5.9e-09 Score=72.18 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=36.3
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
+.+.+.+|.||+|....... ...+ . |.|.||..||..| ++.+||.||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~-----~~~~-~--C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGES-----VRQL-P--CNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSC-----EEEC-T--TSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred cCCCCCCCeeCCccccCCCC-----EEEe-C--CCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 34567899999987421100 0012 4 9999999999988 4578999998874
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.66 E-value=3.1e-09 Score=77.00 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=37.1
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc--cCCChhhhhccc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--SQSCLFAVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R--SkSCP~CR~~~~ 207 (208)
.+.+|+||++.-.+.|. +++ |+|+||..|+..|- +.+||.||..+.
T Consensus 21 ~~~~C~IC~~~~~~p~~--------~~~--CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMI--------IPQ--CSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHTBCTTTCSBCSSEEE--------CTT--TCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccCChhhCCcCE--------ECC--CCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 45789999998766555 346 99999999999774 468999998764
No 31
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.65 E-value=5.4e-09 Score=77.01 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=36.7
Q ss_pred CCCCccccccccccce-------eeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 151 DRNDECGICMENCTKM-------VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k~-------V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
+.+.+|+||+|.-.+. |. .. |+|+||..||..| .+.+||.||..+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVS---------TE--CGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEE---------ET--TCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChhhhCccccccCeEe---------cC--CCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 4568999999875443 33 35 9999999999988 5679999998764
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.62 E-value=5e-09 Score=78.87 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=37.1
Q ss_pred CCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc---cCCChhhhhccc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R---SkSCP~CR~~~~ 207 (208)
+.+..|.||++...+.|. -+ |+|+||..||..|- ..+||.||.++.
T Consensus 50 ~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 50 EETFQCICCQELVFRPIT---------TV--CQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp HHHTBCTTTSSBCSSEEE---------CT--TSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCCCCcCChHHcCcEE---------ee--CCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 355789999999777666 34 99999999999663 359999998874
No 33
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.61 E-value=4.6e-09 Score=73.71 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=37.1
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCch-hhhhHHhccccCCChhhhhccc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNARSQSCLFAVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~RSkSCP~CR~~~~ 207 (208)
.+.+|.||++.....|+ -+ |+|. ||..|+..| ..||.||..+.
T Consensus 23 ~~~~C~iC~~~~~~~~~---------~p--CgH~~~C~~C~~~~--~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVF---------VP--CGHLVTCKQCAEAV--DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCEEE---------ET--TCCBCCCHHHHTTC--SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCEEE---------cC--CCChhHHHHhhhcC--ccCCCcCcCcc
Confidence 45789999999877777 34 9999 999999988 89999998874
No 34
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.61 E-value=1.9e-08 Score=72.48 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=35.6
Q ss_pred ccCCCCcccccccccc--ceeeecccccccCCCCCCCchhhhhHHhcc---ccCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCT--KMVTRKHFSLERIPDKYFSHNGLIMNYRNA---RSQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~--k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~---RSkSCP~CR~~~~ 207 (208)
+++.+.+|.||||..+ +.++ .+ + . |+|+||..|+.++ ...+||.||.++.
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~---~p---~-~--CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINF---FP---C-T--CGYQICRFCWHRIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTC---CS---S-T--TSCCCCHHHHHHHTTSSCSBCTTTCCBCS
T ss_pred ccccCCcCCccCccCccccccc---cc---c-C--CCCCcCHHHHHHHHhcCCCCCCCCCCccC
Confidence 3557789999999742 1111 11 1 3 9999999999944 3579999999874
No 35
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.60 E-value=6.6e-09 Score=77.09 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=36.3
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc---cCCChhhhhcc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAY 206 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R---SkSCP~CR~~~ 206 (208)
.+..|.||++...+.|. + + |+|+||..||..|- ..+||.||..+
T Consensus 14 ~~~~C~iC~~~~~~p~~--------~-~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 14 SECQCGICMEILVEPVT--------L-P--CNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HHHBCTTTCSBCSSCEE--------C-T--TSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCCccCCcccCceeE--------c-C--CCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 45789999998776666 3 4 99999999999775 45899999875
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.9e-08 Score=67.20 Aligned_cols=43 Identities=28% Similarity=0.387 Sum_probs=34.7
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc-----cCCChhh
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR-----SQSCLFA 202 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R-----SkSCP~C 202 (208)
+++.+.+|.||++...+.|. + + |.|.||..||.+|- ...||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~--------~-~--CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVT--------I-D--CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEE--------C-T--TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEE--------e-C--CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35577899999998776666 3 5 99999999999773 3589998
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.57 E-value=8.3e-09 Score=75.74 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc--c-CCChhhhhccc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--S-QSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R--S-kSCP~CR~~~~ 207 (208)
+.+..|.||++...+.|. +.+ |+|.||..||..|- + .+||.||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~--------~~~--CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARL--------CPH--CSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSSEEE--------CTT--TCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccccCccc--------cCC--CCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 356789999998655443 245 99999999999773 3 58999998864
No 38
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.56 E-value=2.4e-08 Score=69.09 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=39.5
Q ss_pred cccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc---cCCChhhhhccc
Q 028527 148 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 207 (208)
Q Consensus 148 id~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R---SkSCP~CR~~~~ 207 (208)
.++..+..|.||++.-.+.|. -. |+|+||..||..|- +.+||.||..+.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~---------~~--CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVI---------VS--TGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEE---------ET--TTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cCCcccCCCCCccccccCCEE---------cC--CCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 345678899999998766666 34 99999999999663 568999998764
No 39
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.52 E-value=1.6e-08 Score=69.56 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=37.5
Q ss_pred CCCCccccccccccceeeecccccccC-CCCCCCch-hhhhHHhccc--cCCChhhhhccc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERI-PDKYFSHN-GLIMNYRNAR--SQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~L-pn~~C~H~-fCl~Cir~~R--SkSCP~CR~~~~ 207 (208)
+.+.+|.||||.....|+ + -+ |+|. +|..|+.+|. ++.||+||..+.
T Consensus 6 ~~~~~C~IC~~~~~~~~~--------~~~p--CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCI--------VHGK--TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEE--------EETT--EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEE--------ECCC--CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 356799999999877775 2 14 9999 8999999654 478999998764
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.52 E-value=1.2e-08 Score=80.25 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=36.5
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc---cCCChhhhhcc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAY 206 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R---SkSCP~CR~~~ 206 (208)
.+..|.||++...+.|. +.+ |+|+||..||..|- ...||.||..+
T Consensus 53 ~~~~C~IC~~~~~~p~~--------~~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMT--------TKE--CLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBCSSEEE--------ETT--TCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCCcccChHhhCcCE--------eCC--CCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 45699999998766554 246 99999999999773 56899999876
No 41
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=1.4e-08 Score=76.10 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=38.6
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccccCCChhhhhccc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARSQSCLFAVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~RSkSCP~CR~~~~ 207 (208)
.+..|.||++.-.+.|. +.+ |+|+||..||..|-...||.||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~--------~~~--CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVC--------LGG--CEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBC--------CCS--SSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccE--------eCC--CCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 56899999998766665 336 99999999999887789999998763
No 42
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.51 E-value=2.7e-08 Score=91.27 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=38.7
Q ss_pred CCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc---ccCCChhhhhccc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA---RSQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~---RSkSCP~CR~~~~ 207 (208)
+.+.+|.||||...+.|. .+ |+|.||..|+..| ++.+||.||..+.
T Consensus 330 ~~~~~C~ICle~~~~pv~---------lp--CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKI---------EP--CGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp TSSSBCTTTSSSBCCEEE---------ET--TCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCccCcCCCCeEE---------eC--CCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 345799999999877776 45 9999999999988 5689999998764
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.51 E-value=1.8e-08 Score=74.22 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=37.0
Q ss_pred CCCCccccccccccce-------eeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 151 DRNDECGICMENCTKM-------VTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k~-------V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
+.+.+|.||++...+. +. .. |+|.||..|+..| ++++||.||.++.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~---------~~--CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVS---------TE--CGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEE---------ET--TSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCccccccccCcceEe---------CC--CCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 4678999999875442 33 45 9999999999977 5689999999874
No 44
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=6.2e-08 Score=67.79 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=38.4
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCch-hhhhHHhccccCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNARSQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~RSkSCP~CR~~~~ 207 (208)
+.+.+.+|.|||+....+|+ +| |.|. ||..|+. +.+.||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~--------~p---CgH~~~C~~C~~--~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVL--------LP---CRHTCLCDGCVK--YFQQCPMCRQFVQ 57 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEE--------TT---TTBCCSCTTHHH--HCSSCTTTCCCCC
T ss_pred cCCCCCCCCCcCcCCCCEEE--------EC---CCChhhhHHHHh--cCCCCCCCCcchh
Confidence 34467899999999888887 34 9999 9999997 4589999998764
No 45
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.49 E-value=3.1e-08 Score=66.08 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=35.4
Q ss_pred CCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccccCCChhhhhccc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARSQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~RSkSCP~CR~~~~ 207 (208)
+.+..|.||++.-.+.+. +| |.|+||..|+..| +.+||.||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~--------l~---CgH~fC~~Ci~~~-~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKL--------LP---CLHTLCSGCLEAS-GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSC--------ST---TSCCSBTTTCSSS-SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEE--------cC---CCCcccHHHHccC-CCCCCcCCcEee
Confidence 356789999998655444 34 9999999999874 678999998763
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=2.9e-08 Score=72.31 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=35.3
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcccc-----CCChhhhhccc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS-----QSCLFAVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~RS-----kSCP~CR~~~~ 207 (208)
.+.+|.||++.....+. -. |+|.||..|+..|-. .+||.||..+.
T Consensus 20 ~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIKEPVS---------TK--CDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCSSCCB---------CT--TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCCcccChhhcCeEE---------CC--CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 34689999998655554 34 999999999996643 37999998764
No 47
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.9e-08 Score=70.40 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=35.5
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCch-hhhhHHhccccCCChhhhhccc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNARSQSCLFAVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~RSkSCP~CR~~~~ 207 (208)
.+.+|.||++.....|+ -+ |+|. ||..|+.+ ...||+||..+.
T Consensus 24 ~~~~C~IC~~~~~~~~~---------~p--CgH~~~C~~C~~~--~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVF---------VP--CGHLVTCKQCAEA--VDKCPMCYTVIT 67 (75)
T ss_dssp HHHSCSSSCSSCCCBCC---------SS--SCCCCBCHHHHHH--CSBCTTTCCBCC
T ss_pred CCCCCCcCCCCCCCEEE---------ec--CCCHHHHHHHhhC--CCCCccCCceec
Confidence 34689999999877776 34 9999 99999964 489999998764
No 48
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.42 E-value=4.1e-08 Score=67.35 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=36.0
Q ss_pred CCCCccccccccccceeeecccccccC-CCCCCCch-hhhhHHhccc--cCCChhhhhccc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERI-PDKYFSHN-GLIMNYRNAR--SQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~L-pn~~C~H~-fCl~Cir~~R--SkSCP~CR~~~~ 207 (208)
+.+.+|.||||...+.++ + .+ |+|. +|..|+.++. ++.||+||.++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~--------~~~p--CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNI--------IHGR--TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEE--------EETT--EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEE--------EecC--CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 346799999998655443 1 24 9998 9999999553 469999999874
No 49
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.40 E-value=7.1e-08 Score=73.30 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=35.0
Q ss_pred CCCccccccccccceee---e---ccccc---ccCCCCCCCchhhhhHHhcc--ccCCChhhhhcc
Q 028527 152 RNDECGICMENCTKMVT---R---KHFSL---ERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAY 206 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~---~---k~~~~---~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~ 206 (208)
.++.|+||++.-..... . ...+. -++.. |+|.|+..||..| ++.+||.||..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~--C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV--CNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET--TSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc--cCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 46889999987432200 0 00000 01245 9999999999988 568999999874
No 50
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.39 E-value=3.7e-08 Score=70.58 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=36.2
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCch-hhhhHHhccccCCChhhhhccc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNARSQSCLFAVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~RSkSCP~CR~~~~ 207 (208)
.+.+|.|||+.....|+ -+ |+|. ||..|+.++ +.||+||..+.
T Consensus 17 ~~~~C~IC~~~~~~~v~---------~p--CgH~~~C~~C~~~~--~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTF---------CP--CGHTVCCESCAAQL--QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCCEEE---------ET--TCBCCBCHHHHTTC--SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCcEEE---------EC--CCCHHHHHHHHHhc--CcCCCCCchhh
Confidence 34689999999888887 34 9999 999999876 49999998764
No 51
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.32 E-value=5.1e-08 Score=72.36 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=36.8
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc---cCCChhhhhccc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R---SkSCP~CR~~~~ 207 (208)
.+..|+||++...+.|. -+ |+|+||..||..|- ..+||.||..+.
T Consensus 22 ~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 22 KSISCQICEHILADPVE---------TS--CKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHTBCTTTCSBCSSEEE---------CT--TSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCCCcHhcCcEE---------cC--CCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 45789999999777666 35 99999999999663 468999998764
No 52
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.31 E-value=2.1e-07 Score=69.76 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=38.3
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc--c-CCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR--S-QSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R--S-kSCP~CR~~~~ 207 (208)
.++.+..|.||++.....|. -. |+|+||..||..|- + .+||.||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQ---------TP--CGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEE---------CT--TSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCeEE---------CC--cCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 34566799999998776666 35 99999999999763 2 49999998864
No 53
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.30 E-value=1.1e-07 Score=75.28 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=37.0
Q ss_pred CCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc---cCCChhhhhccc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R---SkSCP~CR~~~~ 207 (208)
..+..|.||++...+.|. -. |.|+||..||..|- ..+||.||..+.
T Consensus 76 ~~~~~C~IC~~~~~~pv~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVT---------TE--CFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp HHHTBCTTTSSBCSSEEE---------CT--TSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred ccCCEeecCChhhcCCEE---------cC--CCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 346799999998777666 34 99999999999663 248999998874
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.29 E-value=2e-07 Score=73.19 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=38.3
Q ss_pred cccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcccc---CCChhhhhcc
Q 028527 148 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNARS---QSCLFAVAAY 206 (208)
Q Consensus 148 id~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~RS---kSCP~CR~~~ 206 (208)
..++.+..|.||++...+.|. -. |.|.||..||..|-. .+||.||..+
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~---------~~--CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQ---------AQ--CGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEE---------CT--TSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred ccCCcCcCCCCCChhhcCcEE---------CC--CCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345677899999999776666 35 999999999997732 5899999853
No 55
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.23 E-value=1.6e-07 Score=73.17 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=1.1
Q ss_pred CCCccccccccccceeee-cc-----cccc---cCCCCCCCchhhhhHHhcc--ccCCChhhhhcc
Q 028527 152 RNDECGICMENCTKMVTR-KH-----FSLE---RIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAY 206 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~-k~-----~~~~---~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~ 206 (208)
.++.|+||++.-...... +. .+.+ .++. |+|.|+..||..| ++.+||.||..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~--C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV--CNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC--cCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 468999999874321100 00 0000 1245 9999999999987 467999999874
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.19 E-value=6e-07 Score=73.26 Aligned_cols=48 Identities=6% Similarity=-0.162 Sum_probs=38.5
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc---cCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R---SkSCP~CR~~~~ 207 (208)
+...+-.|+||++.-.+.|. .. |+|+||-.||..|- ..+||+||.++.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~---------~~--~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCI---------TP--SGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEE---------CS--SCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhcCCeE---------CC--CCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 34467789999999888887 45 99999999999552 345999998864
No 57
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.10 E-value=4.8e-07 Score=81.05 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=37.9
Q ss_pred CCCCccccccccccceeeecccccccCCCCCCCch-hhhhHHhccccCCChhhhhccc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHN-GLIMNYRNARSQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~-fCl~Cir~~RSkSCP~CR~~~~ 207 (208)
+.+..|.|||+.....|+ + + |+|. ||..|+..| ..||.||..+.
T Consensus 293 ~~~~~C~IC~~~~~~~v~--------l-p--CgH~~fC~~C~~~~--~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVF--------I-P--CGHLVVCQECAPSL--RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEE--------E-T--TCCEEECTTTGGGC--SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEE--------c-C--CCChhHhHHHHhcC--CcCCCCCCCcc
Confidence 356899999999887777 3 4 9999 999999988 78999999875
No 58
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.07 E-value=1.4e-06 Score=62.75 Aligned_cols=48 Identities=10% Similarity=-0.207 Sum_probs=39.5
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
++..+-.|.||++.-.+-|. .. |+|+||-.||..| +..+||+||.++.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~---------~~--cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVR---------LP--SGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEE---------CT--TSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred cCchheECcccCchhcCCeE---------CC--CCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 34567899999999877777 44 9999999999965 3579999998764
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.03 E-value=1.6e-06 Score=68.08 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=38.7
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc---cCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR---SQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R---SkSCP~CR~~~~ 207 (208)
+++.+..|.||++.-.+.|. -. |+|+||..||..|- +..||.||..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~---------~~--CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQ---------TP--CGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEE---------CT--TSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCcEE---------CC--CCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 45567899999999776666 35 99999999999763 359999998764
No 60
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.94 E-value=4.2e-06 Score=62.24 Aligned_cols=48 Identities=13% Similarity=-0.171 Sum_probs=39.2
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCC-chhhhhHHhcc--ccCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFS-HNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~-H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
++..+-.|.||++.-.+-|. -. |. |+||-.||..| ...+||+||.+|.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~---------~~--cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVV---------LP--SSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEE---------CT--TTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cCcHhcCCcCccccccCCeE---------CC--CCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 34567899999999877777 34 88 99999999965 3578999998874
No 61
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.93 E-value=3.2e-06 Score=63.10 Aligned_cols=48 Identities=10% Similarity=-0.202 Sum_probs=39.2
Q ss_pred ccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 149 DLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 149 d~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
++..+-.|.||++.-.+.|. .. |+|+||-.||..| ...+||+||.++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~---------~~--cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVR---------LP--SGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEE---------ET--TTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cCcHhhCCcCccCcccCCeE---------CC--CCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 34567899999999877776 34 9999999999955 3579999998874
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.83 E-value=2.4e-06 Score=61.63 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=32.0
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHh-ccc---------cCCChh--hhhc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR-NAR---------SQSCLF--AVAA 205 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir-~~R---------SkSCP~--CR~~ 205 (208)
.+.+|+||+|.....+. . .+.+ |+|.||..|++ .|. .-+||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~---~---~l~~--CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQM---T---TIAQ--CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGE---E---EETT--TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccc---e---EcCC--CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45789999987433221 0 1246 99999999998 222 248999 9976
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=7.1e-06 Score=59.46 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=33.6
Q ss_pred CCCCcccccccccc--ceeeecccccccCCCCCCC-----chhhhhHHhccc--c--CCChhhhhccc
Q 028527 151 DRNDECGICMENCT--KMVTRKHFSLERIPDKYFS-----HNGLIMNYRNAR--S--QSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~~--k~V~~k~~~~~~Lpn~~C~-----H~fCl~Cir~~R--S--kSCP~CR~~~~ 207 (208)
+.+++|.||+|.-. ..++ +| |+ |.|...|+.+|- + .+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~--------~p---C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLI--------TP---CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEE--------CS---SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCeEcCccccCCCeeE--------ec---cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 46789999996521 1111 24 86 999999999883 2 48999998764
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.56 E-value=1.9e-05 Score=57.54 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=35.3
Q ss_pred CCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc-c-------cCCChh--hhhc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-R-------SQSCLF--AVAA 205 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-R-------SkSCP~--CR~~ 205 (208)
..+-.|.||++.-.+.|. ++. |+|+||-.||..| + ...||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~--------~~~--cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVK--------NKV--CGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEE--------ESS--SCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEE--------cCC--CCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 356789999998777776 356 9999999999955 2 248999 9844
No 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.45 E-value=6.3e-05 Score=54.45 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=34.5
Q ss_pred CCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc----cCCChhhhhcc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR----SQSCLFAVAAY 206 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R----SkSCP~CR~~~ 206 (208)
+..++|.||.+.....+. -+. |+|.|-..||.+|- +.+||.||..+
T Consensus 13 ~~i~~C~IC~~~i~~g~~--------C~~--C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQS--------CET--CGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp SSSCBCSSSCCBCSSSEE--------CSS--SCCEECHHHHHHHSTTCSSCCCTTTCSCC
T ss_pred CCCCcCcchhhHcccCCc--------cCC--CCchhhHHHHHHHHHhcCCCCCCCCcCcC
Confidence 345899999999543221 245 99999999999872 26899999765
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.37 E-value=8.7e-05 Score=61.48 Aligned_cols=49 Identities=4% Similarity=-0.138 Sum_probs=39.3
Q ss_pred cccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc-c--cCCChhhhhccc
Q 028527 148 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-R--SQSCLFAVAAYR 207 (208)
Q Consensus 148 id~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-R--SkSCP~CR~~~~ 207 (208)
.++..+-.|.||++.-.+.|. .. |+|+||-.||..| . ..+||+||.++.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~---------~~--~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCI---------TP--SGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEE---------CT--TSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCcHhhcccCccccCCCCeE---------CC--CCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 445567899999999888887 45 9999999999955 2 247999998864
No 67
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.27 E-value=5.4e-05 Score=69.86 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=34.5
Q ss_pred CCCCccccccccccceeeecccccccCCCC-----CCCchhhhhHHhcc-cc------------CCChhhhhcc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDK-----YFSHNGLIMNYRNA-RS------------QSCLFAVAAY 206 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~-----~C~H~fCl~Cir~~-RS------------kSCP~CR~~~ 206 (208)
+...+||||++.... .+.+|++ .|+|.|...|+..| ++ .+||.||.++
T Consensus 306 e~~~ECaICys~~l~--------~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 306 NEELRCNICFAYRLD--------GGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CSCCSCSSSCCSSCT--------TCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cCCccCcccceeecC--------CCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 356799999998432 1223432 58999999999977 32 4699999875
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0003 Score=62.13 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=36.1
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHhcc-cc---CCChh--hhhccc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA-RS---QSCLF--AVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~-RS---kSCP~--CR~~~~ 207 (208)
.+..|.||++.-...|. . +.|+|+||-.||..| +. .+||. ||..+.
T Consensus 180 ~el~CPIcl~~f~DPVt---------s-~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAPLI---------S-RKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSEEE---------E-SSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCCee---------e-CCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 45689999999877776 2 239999999999943 33 47999 998653
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.62 E-value=0.00092 Score=45.96 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=33.1
Q ss_pred cCCCCccccccccccceeeecccccccCCCCCCCc---hhhhhHHhccc----cCCChhhhhccc
Q 028527 150 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSH---NGLIMNYRNAR----SQSCLFAVAAYR 207 (208)
Q Consensus 150 ~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H---~fCl~Cir~~R----SkSCP~CR~~~~ 207 (208)
.+.+.+|-||++..... + ++| =.|.| .+-..|+.+|. +.+||+|+..|+
T Consensus 3 ~~~~~~CrIC~~~~~~~-------l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNE-------R-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEECSCC-------C-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCEeEEeecCCCCc-------e-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45678999999763221 1 235 11444 67888999884 478999998874
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.13 E-value=0.00066 Score=52.73 Aligned_cols=26 Identities=8% Similarity=-0.159 Sum_probs=22.4
Q ss_pred CCchhhhhHHhccc---cCCChhhhhccc
Q 028527 182 FSHNGLIMNYRNAR---SQSCLFAVAAYR 207 (208)
Q Consensus 182 C~H~fCl~Cir~~R---SkSCP~CR~~~~ 207 (208)
|.|+||.+|+..|. .++||.|+.++.
T Consensus 20 CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 20 CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 99999999999654 479999998764
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.09 E-value=0.0016 Score=44.69 Aligned_cols=44 Identities=9% Similarity=-0.114 Sum_probs=36.3
Q ss_pred CccccccccccceeeecccccccCCCCCCCchhhhhHHhcc--ccCCChhhhhccc
Q 028527 154 DECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNA--RSQSCLFAVAAYR 207 (208)
Q Consensus 154 ~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~--RSkSCP~CR~~~~ 207 (208)
..|.||.|.-.+-|. ++. ++|+|+..||.+| +...||+.+.+|.
T Consensus 4 ~~CpIs~~~m~dPV~--------~~~--sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRPVL--------SPK--SRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSEEE--------ETT--TTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCCEE--------eCC--CCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 579999998877777 236 9999999999977 4567999998874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.99 E-value=0.03 Score=47.63 Aligned_cols=45 Identities=9% Similarity=0.047 Sum_probs=34.8
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHhccc----cCCChhhhhcc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRNAR----SQSCLFAVAAY 206 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~R----SkSCP~CR~~~ 206 (208)
.-.+|-||.+.+...+. =++ |+|.|-..|+.+|- +..||.|+...
T Consensus 179 ~i~~C~iC~~iv~~g~~--------C~~--C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQS--------CET--CGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp TCCBCTTTCSBCSSCEE--------CSS--SCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCCcCcchhhHHhCCcc--------cCc--cChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 46899999999654433 256 99999999999762 45999998754
No 73
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=90.05 E-value=0.17 Score=38.78 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=36.8
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHh---ccccCCChhhhhcccC
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR---NARSQSCLFAVAAYRE 208 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir---~~RSkSCP~CR~~~~~ 208 (208)
....|-||-+.+-..+....|-. --. |+-..|-.||. +-.+++||+|...|+|
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVA--C~e--C~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVA--CNE--CGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCS--CSS--SCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEe--eec--cCChhhHHHHHHHHhccCccccccCCcccc
Confidence 44789999988543333222211 123 77789999998 5567999999999875
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.79 E-value=0.18 Score=36.03 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=21.6
Q ss_pred CCcccccccc-ccceeeecccccccCCCCCCCchhhhhHHhc
Q 028527 153 NDECGICMEN-CTKMVTRKHFSLERIPDKYFSHNGLIMNYRN 193 (208)
Q Consensus 153 d~eCgICME~-~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~ 193 (208)
+..|.||++. ..+.|. +- .. |.|+||..|++.
T Consensus 3 e~~C~~C~~~~~~~av~---~C----~~--C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVK---TC----VT--CEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCE---EE----TT--TTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceE---EC----Cc--CChHHhHHHCHH
Confidence 5689999974 222221 00 14 999999999995
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=79.08 E-value=0.78 Score=35.53 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=32.2
Q ss_pred CCccccccccccceeeecccccccCCCCCCCchhhhhHHh--ccccCCChhhhhcc
Q 028527 153 NDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR--NARSQSCLFAVAAY 206 (208)
Q Consensus 153 d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir--~~RSkSCP~CR~~~ 206 (208)
-.-|-.|.-....-|. = .+|..|++|.. -.+|.-||+|-.+|
T Consensus 28 ~~nCKsCWf~~k~LV~----------C--~dHYLCl~CLtlmL~~SdrCpIC~~pL 71 (99)
T 2ko5_A 28 PQFCKSCWFENKGLVE----------C--NNHYLCLNCLTLLLSVSNRCPICKMPL 71 (99)
T ss_dssp CCCCCSSCSCCSSEEE----------C--SSCEEEHHHHHHTCSSSSEETTTTEEC
T ss_pred cccChhhccccCCeee----------e--cchhhHHHHHHHHHhhccCCcccCCcC
Confidence 4578888855444444 2 57999999999 77899999998766
No 76
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=68.52 E-value=4.5 Score=32.41 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=31.0
Q ss_pred cCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHh-cc------------ccCCChhhhh
Q 028527 150 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR-NA------------RSQSCLFAVA 204 (208)
Q Consensus 150 ~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir-~~------------RSkSCP~CR~ 204 (208)
...++.|.+|.+.-.-..= .. |..+||..|+. +- ..-+||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcC---------D~--Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICC---------DF--CHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEEC---------SS--SCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeC---------CC--CCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4568999999987432222 34 99999999998 11 1247999984
No 77
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=58.28 E-value=8.9 Score=30.27 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=30.1
Q ss_pred cCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHh-c------------cccCCChhhhh
Q 028527 150 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR-N------------ARSQSCLFAVA 204 (208)
Q Consensus 150 ~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir-~------------~RSkSCP~CR~ 204 (208)
...++.|.||-+... .+. =.+ |..+||..|+. + ...-+|+.|+-
T Consensus 54 Dg~~~~C~vC~dGG~-Llc--------Cd~--Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGN-LIC--------CDF--CHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCSE-EEE--------CSS--SSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCCe-eEe--------cCC--CchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 346788999997632 222 034 99999999998 2 11248999964
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=58.08 E-value=9 Score=25.83 Aligned_cols=48 Identities=13% Similarity=0.267 Sum_probs=33.0
Q ss_pred cccccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhc--c----ccCCChhhhh
Q 028527 146 SDKDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRN--A----RSQSCLFAVA 204 (208)
Q Consensus 146 s~id~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~--~----RSkSCP~CR~ 204 (208)
...+.+.+..|.||-+. .+++. =.. |...|-+.|+.- . ..-.||.|+.
T Consensus 4 ~~~~~~~~~~C~vC~~~-g~ll~--------CD~--C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 4 GSYETDHQDYCEVCQQG-GEIIL--------CDT--CPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCSSCCCSSCTTTSCC-SSEEE--------CSS--SSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CcccCCCCCCCccCCCC-CcEEE--------CCC--CChhhhhhccCCCCCCCCCCceECccccc
Confidence 34555678899999874 34454 134 888899999982 1 2358999975
No 79
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=55.17 E-value=2.9 Score=29.74 Aligned_cols=20 Identities=5% Similarity=-0.177 Sum_probs=17.3
Q ss_pred CCchhhhhHHhccccCCChh
Q 028527 182 FSHNGLIMNYRNARSQSCLF 201 (208)
Q Consensus 182 C~H~fCl~Cir~~RSkSCP~ 201 (208)
|.|.||..|-..|...+|..
T Consensus 56 C~~~FC~~C~~~wH~~~C~~ 75 (80)
T 2jmo_A 56 CGFAFCRECKEAYHEGECSA 75 (80)
T ss_dssp CSCCEETTTTEECCSSCSSS
T ss_pred CCCeeccccCccccCCcccc
Confidence 99999999999996677753
No 80
>1co4_A AMT1, protein (activator of metallothionein 1); metal regulation, translation/regulation protein complex; NMR {Synthetic} SCOP: g.47.1.1
Probab=51.72 E-value=2.8 Score=27.97 Aligned_cols=16 Identities=6% Similarity=0.137 Sum_probs=13.8
Q ss_pred hhhhHHhccccCCChh
Q 028527 186 GLIMNYRNARSQSCLF 201 (208)
Q Consensus 186 fCl~Cir~~RSkSCP~ 201 (208)
-|..|||-|||.+|-.
T Consensus 10 AC~~CirGHRss~C~H 25 (42)
T 1co4_A 10 ACDSCIKSHKAAQCEH 25 (42)
T ss_dssp EETTTTTTSGGGGCCC
T ss_pred ehhhhcCccccCeeEc
Confidence 5999999999999854
No 81
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.50 E-value=8.5 Score=26.76 Aligned_cols=40 Identities=13% Similarity=-0.033 Sum_probs=26.3
Q ss_pred Ccccccccccc-ceeeecccccccCCCCCCCchhhhhHHh--ccccCCChhh
Q 028527 154 DECGICMENCT-KMVTRKHFSLERIPDKYFSHNGLIMNYR--NARSQSCLFA 202 (208)
Q Consensus 154 ~eCgICME~~~-k~V~~k~~~~~~Lpn~~C~H~fCl~Cir--~~RSkSCP~C 202 (208)
..|--|.-.-. +.++ +=|+ |.+.||+.|=- +-.-.+||-|
T Consensus 16 ~~C~~C~~~~~~~~~y-------~C~~--C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVY-------VCAV--CQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEE-------CCTT--TTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccE-------ECCc--cCcCcccchhHHHHhhccCCcCC
Confidence 35777765432 1122 1367 99999999977 4445789987
No 82
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=43.91 E-value=17 Score=25.08 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=29.4
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHhc------cccCCChhhhhc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRN------ARSQSCLFAVAA 205 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~------~RSkSCP~CR~~ 205 (208)
.+.+|.||-+. .+++. =.. |...|.+.|+.- ...-.||.|...
T Consensus 11 ~~~~C~vC~~~-~~ll~--------Cd~--C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG-TDVLR--------CTH--CAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC-TTCEE--------CSS--SCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC-CeEEE--------CCC--CCCceecccCCCccCcCCCCCEECccccCC
Confidence 45789999865 34454 134 999999999961 123489999753
No 83
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=40.92 E-value=22 Score=24.86 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=31.7
Q ss_pred cCCCCccccccccc----cceeeecccccccCCCCCCCchhhhhHHhc----cccCCChhhhhc
Q 028527 150 LDRNDECGICMENC----TKMVTRKHFSLERIPDKYFSHNGLIMNYRN----ARSQSCLFAVAA 205 (208)
Q Consensus 150 ~~~d~eCgICME~~----~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~----~RSkSCP~CR~~ 205 (208)
...++.|.||.+.. .++|+ =.. |+-+|-..|+.- ...-.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~--------CD~--C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILF--------CDM--CNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEE--------CSS--SCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE--------CCC--CCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34678999998653 45555 124 888899999972 123579999764
No 84
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=34.79 E-value=36 Score=24.57 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=31.4
Q ss_pred cCCCCccccccccc----cceeeecccccccCCCCCCCchhhhhHHhc----cccCCChhhhhc
Q 028527 150 LDRNDECGICMENC----TKMVTRKHFSLERIPDKYFSHNGLIMNYRN----ARSQSCLFAVAA 205 (208)
Q Consensus 150 ~~~d~eCgICME~~----~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~----~RSkSCP~CR~~ 205 (208)
.+.+..|.||.+.. ..+|+ =.. |.-+|-..|+.- ...-.||.|+..
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~--------CD~--C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILF--------CDM--CNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEE--------CSS--SCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEE--------CCC--CCchhhcccCCCCccCCCceECccccCc
Confidence 34678999999653 34555 134 888888999972 134579999764
No 85
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.52 E-value=31 Score=28.27 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=24.4
Q ss_pred CCCCccccccccccceeeecccccccCCCCCCCchhhhhHHh
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR 192 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir 192 (208)
..+..|.||-+.. +.+. =.|..|..+||..||.
T Consensus 77 G~~~yC~wC~~Gg-~l~~--------Cdn~~C~r~FC~~CI~ 109 (159)
T 3a1b_A 77 GYQSYCTICCGGR-EVLM--------CGNNNCCRCFCVECVD 109 (159)
T ss_dssp SSBSSCTTTSCCS-EEEE--------CSSTTTCCEEEHHHHH
T ss_pred CCcceeeEecCCC-eEEe--------eCCCCCCCchhHHHHH
Confidence 4678999999864 2232 1444599999999998
No 86
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=32.28 E-value=7.1 Score=27.80 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=17.6
Q ss_pred CCCCCCchhhhhHHhcc---cc-CCChh
Q 028527 178 PDKYFSHNGLIMNYRNA---RS-QSCLF 201 (208)
Q Consensus 178 pn~~C~H~fCl~Cir~~---RS-kSCP~ 201 (208)
|. |++.||..|-..| .. .+|..
T Consensus 47 ~~--C~~~FC~~C~~~w~~~H~~~sC~~ 72 (86)
T 2ct7_A 47 PQ--CHQTFCVRCKRQWEEQHRGRSCED 72 (86)
T ss_dssp TT--TCCEECSSSCSBCCTTTTTSCHHH
T ss_pred CC--CCCccccccCCchhhcCCCCChHH
Confidence 55 9999999999999 44 56764
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=31.71 E-value=22 Score=23.89 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=29.0
Q ss_pred CCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhc--c----ccCCChhhhhc
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRN--A----RSQSCLFAVAA 205 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~--~----RSkSCP~CR~~ 205 (208)
+.+..|.||-+. .+++. =.. |..+|-+.|+.- . ..-.||.|+..
T Consensus 7 ~~~~~C~vC~~~-g~ll~--------Cd~--C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG-GELLC--------CDT--CPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC-SSCBC--------CSS--SCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC-CCEEE--------cCC--CCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 457789999864 23333 134 888888888871 1 12469999865
No 88
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.58 E-value=21 Score=23.36 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=29.4
Q ss_pred cCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHh--cc----ccCCChhhhh
Q 028527 150 LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR--NA----RSQSCLFAVA 204 (208)
Q Consensus 150 ~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir--~~----RSkSCP~CR~ 204 (208)
.+.+..|.||-+. .++|. =.. |...|-+.|+. -. ..-.||.|+.
T Consensus 6 ~~~~~~C~vC~~~-g~ll~--------Cd~--C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS-GQLLM--------CDT--CSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS-SCCEE--------CSS--SSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC-CeEEE--------cCC--CCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3467889999875 34444 134 88888888887 11 2246999974
No 89
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=31.13 E-value=26 Score=23.76 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCCCccccccccccceeeecccccccCCCCCCCchhhhhHHh--cc----ccCCChhhhh
Q 028527 151 DRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR--NA----RSQSCLFAVA 204 (208)
Q Consensus 151 ~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir--~~----RSkSCP~CR~ 204 (208)
..+..|.||-.. .++|. =.. |...|-+.|+. -. ..-.||.|+.
T Consensus 6 ~~~~~C~vC~~~-g~ll~--------CD~--C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG-GELIC--------CDG--CPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC-SSCEE--------CSS--CCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC-CCEEE--------cCC--CChhhcccccCCCcCcCCCCCeECccccC
Confidence 467899999875 34444 134 88778888887 11 2346999975
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.89 E-value=24 Score=25.65 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=32.1
Q ss_pred cccccCCCCccccccccc--cceeeecccccccCCCCCCCchhhhhHHh--c----cccCCChhhhhc
Q 028527 146 SDKDLDRNDECGICMENC--TKMVTRKHFSLERIPDKYFSHNGLIMNYR--N----ARSQSCLFAVAA 205 (208)
Q Consensus 146 s~id~~~d~eCgICME~~--~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir--~----~RSkSCP~CR~~ 205 (208)
+..+...+..|.||-... ..+|+ =.. |...|-+.|+. - ...-.||.|+..
T Consensus 9 s~~~~~~~~~C~vC~~~~~~~~ll~--------CD~--C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 9 SSAQFIDSYICQVCSRGDEDDKLLF--------CDG--CDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCCCSSSCCSGGGGGCEE--------CTT--TCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred chhhccCCCCCccCCCcCCCCCEEE--------cCC--CCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 444555678899998764 34555 123 88778788876 1 122369999753
No 91
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=26.94 E-value=36 Score=23.20 Aligned_cols=46 Identities=11% Similarity=-0.052 Sum_probs=29.9
Q ss_pred CCCccccccccc--cceeeecccccccCCCCCCCchhhhhHHhcc------ccCCChhhhhccc
Q 028527 152 RNDECGICMENC--TKMVTRKHFSLERIPDKYFSHNGLIMNYRNA------RSQSCLFAVAAYR 207 (208)
Q Consensus 152 ~d~eCgICME~~--~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~~------RSkSCP~CR~~~~ 207 (208)
.+..|.||-... ..+|. =.+ |...|-..|+.-. ..-.||.|+..++
T Consensus 17 ~~~~C~~C~~~~~~~~mi~--------CD~--C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIG--------CDD--CDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEE--------CSS--SSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEE--------cCC--CCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345699997653 23555 134 8877888888721 2347999988764
No 92
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=26.77 E-value=35 Score=20.79 Aligned_cols=16 Identities=25% Similarity=0.605 Sum_probs=11.4
Q ss_pred CCccccccccccceee
Q 028527 153 NDECGICMENCTKMVT 168 (208)
Q Consensus 153 d~eCgICME~~~k~V~ 168 (208)
=..||.|.+.+...++
T Consensus 8 C~~C~~C~~~CP~~ai 23 (55)
T 2fdn_A 8 CISCGACEPECPVNAI 23 (55)
T ss_dssp CCCCCTTGGGCTTCCE
T ss_pred CcChhhHHHHCCcccc
Confidence 3578999988765554
No 93
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=26.66 E-value=38 Score=22.37 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=29.2
Q ss_pred CCCccccccccccceeeecccccccCCCCCCCchhhhhHHh--cc----ccCCChhhhhc
Q 028527 152 RNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR--NA----RSQSCLFAVAA 205 (208)
Q Consensus 152 ~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir--~~----RSkSCP~CR~~ 205 (208)
.+..|.+|-.. .++|. =.. |...|-+.|+. -. ..-.||.|+..
T Consensus 4 ~~~~C~vC~~~-g~ll~--------Cd~--C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS-GQLLM--------CDT--CSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC-SSCEE--------CSS--SSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC-CcEEE--------cCC--CCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 56889999875 34444 134 88888888987 11 23479999764
No 94
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=25.20 E-value=51 Score=30.33 Aligned_cols=38 Identities=13% Similarity=0.047 Sum_probs=26.8
Q ss_pred cccc-cCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHh
Q 028527 146 SDKD-LDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYR 192 (208)
Q Consensus 146 s~id-~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir 192 (208)
+..| ...+..|.||-+... .+. =.|..|...||..||.
T Consensus 85 f~~D~DG~~~yCr~C~~Gg~-l~~--------Cdn~~C~r~FC~~Ci~ 123 (386)
T 2pv0_B 85 FLYDDDGYQSYCSICCSGET-LLI--------CGNPDCTRCYCFECVD 123 (386)
T ss_dssp TCBCSSSSBCSCTTTCCCSS-CEE--------CCSTTCCCEECHHHHH
T ss_pred cccCCCCCcccceEcCCCCe-EEE--------eCCCCCCcchHHHHHH
Confidence 3444 346889999998753 233 1444599999999998
No 95
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=23.63 E-value=27 Score=22.94 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=9.0
Q ss_pred cccccccccceee
Q 028527 156 CGICMENCTKMVT 168 (208)
Q Consensus 156 CgICME~~~k~V~ 168 (208)
||.|.+.+...++
T Consensus 13 C~~C~~~Cp~~ai 25 (77)
T 1bc6_A 13 DASCVEVCPVDCI 25 (77)
T ss_dssp CCSSTTTCTTCCE
T ss_pred cchhHHhcccccE
Confidence 7888888755444
No 96
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=23.05 E-value=35 Score=25.19 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=30.0
Q ss_pred cccCCCCccccccccccceeeecccccccCCCCCCCchhhhhHHhc------cccCCChhhhhc
Q 028527 148 KDLDRNDECGICMENCTKMVTRKHFSLERIPDKYFSHNGLIMNYRN------ARSQSCLFAVAA 205 (208)
Q Consensus 148 id~~~d~eCgICME~~~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~------~RSkSCP~CR~~ 205 (208)
...+.++.|.+|-... +.+. =.. |.-+|-+.|..- ...-.||.|+..
T Consensus 20 ~~d~n~~~C~vC~~~g-~LL~--------CD~--C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 20 TLDDSATICRVCQKPG-DLVM--------CNQ--CEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSSCCSSSCSSS-CCEE--------CTT--SSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccCCCCCcCcCcCCCC-CEEE--------CCC--CCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3445678999999763 3344 133 877788888851 122469998753
No 97
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=21.66 E-value=41 Score=23.55 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=16.1
Q ss_pred CCCccchhhhhchHHhHHHhh
Q 028527 87 GMPALSSKERKATLREFYAII 107 (208)
Q Consensus 87 G~~~~s~~~RkatlrEFY~vI 107 (208)
|+++||..+-++.+++||..+
T Consensus 1 ~m~~m~~~~~~~~~~~~~~a~ 21 (122)
T 3h3h_A 1 GMEPITQAFAQQFSREWIDAW 21 (122)
T ss_dssp ---CCCHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 789999988899999999875
No 98
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.16 E-value=24 Score=25.36 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=31.6
Q ss_pred CCCCccccccccc----cceeeecccccccCCCCCCCchhhhhHHhc--c--------ccCCChhhhhccc
Q 028527 151 DRNDECGICMENC----TKMVTRKHFSLERIPDKYFSHNGLIMNYRN--A--------RSQSCLFAVAAYR 207 (208)
Q Consensus 151 ~~d~eCgICME~~----~k~V~~k~~~~~~Lpn~~C~H~fCl~Cir~--~--------RSkSCP~CR~~~~ 207 (208)
+.+..|.||-+.. ..+|+ =..|+.+|-+.|+.- . ..-.||.|+...+
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~----------CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVE----------CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEE----------CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEE----------CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 3467899999763 45555 123888888999871 1 1247999987543
Done!