BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028531
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana
GN=At5g19830 PE=2 SV=1
Length = 219
Score = 307 bits (786), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 151/212 (71%), Positives = 171/212 (80%), Gaps = 11/212 (5%)
Query: 2 LINRFLRRGFCTA-VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK 60
+++R RR +CT+ V RPWLF+GLGNPGDKYKGTRHN+GFEMID FAES GI MN V+ K
Sbjct: 1 MLSRLSRRCYCTSSVHRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFK 60
Query: 61 ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR 120
A GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLNRVLV HDDM LPCGVLRL+
Sbjct: 61 AIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQ 120
Query: 121 HNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTAL 170
GGHG HNGLKSVMN+FR GIG+PPGQMDPKAFLLQKF+ ARER+D AL
Sbjct: 121 EKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKAL 180
Query: 171 QEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 202
EGV+ LKL+L+K ES R FN QKYKH++
Sbjct: 181 AEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212
>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1
Length = 256
Score = 230 bits (587), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 107/196 (54%), Positives = 142/196 (72%), Gaps = 10/196 (5%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL GLGNPG+KY GTRHNVGFEM+D A +GI+MNT+ K+ G G +G+ PVL+ K
Sbjct: 61 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVK 120
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
PQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GVLRL+ GGHG HNGL++V+ +
Sbjct: 121 PQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEH 180
Query: 138 FR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 187
GIG PPG+MDP+AFLLQKF++ R +IDTAL++GV+ ++ L+ KG +
Sbjct: 181 LDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSG 240
Query: 188 SARHFNTIQKYKHIRL 203
S FN +QKYK R+
Sbjct: 241 STERFNLVQKYKFHRV 256
>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os01g0132800 PE=2 SV=1
Length = 259
Score = 229 bits (584), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 138/192 (71%), Gaps = 10/192 (5%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL GLGNPG KY GTRHNVGFEM+D A +GI+MNT+ K+ G G +G+ PVLL K
Sbjct: 64 PWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVK 123
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
PQ+Y+N SGE+ GPLAAYY++PL +LV +D+M LP GVLRL+ GGHG HNGL++VM
Sbjct: 124 PQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMEC 183
Query: 138 FR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 187
GIG PPG+MD +AFLLQKF++ R +IDTAL++GV+ ++ L+ KG +
Sbjct: 184 LDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSG 243
Query: 188 SARHFNTIQKYK 199
S FN +QKYK
Sbjct: 244 SIERFNLVQKYK 255
>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana
GN=At1g18440 PE=2 SV=2
Length = 288
Score = 221 bits (564), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/194 (52%), Positives = 142/194 (73%), Gaps = 10/194 (5%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL VGLGNPG KY+GTRHNVGFEM+DA A+++GISMNTV+ KA FG+G +G+ P++LAK
Sbjct: 94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
PQT+MNLSGES G + ++YK+PL +VLV +DD+ LP G LRL GGHGGHNG++S+++
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213
Query: 138 FR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 187
+ GIGRPPG+MD F+L++FN +E +D Q G+E +++LL +G +
Sbjct: 214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNK 273
Query: 188 SARHFNTIQKYKHI 201
SA NT + + +
Sbjct: 274 SATFVNTRKSMEQL 287
>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A,
chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1
Length = 246
Score = 221 bits (563), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/192 (56%), Positives = 134/192 (69%), Gaps = 10/192 (5%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL VGLGNPG KY GTRHN+GFEMID A + ISMNT+ KA G G VG+ P+LL K
Sbjct: 51 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVK 110
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
PQ YMN SGES GPLAAYY++PL +L+ +DDMGL GVLRL+ GGH HNGLK+V +
Sbjct: 111 PQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEH 170
Query: 138 FR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 187
GIG PPG MD KAFLLQKF+ + R+++D L++GVE +K L+ +G ++
Sbjct: 171 LNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSD 230
Query: 188 SARHFNTIQKYK 199
S FN QKYK
Sbjct: 231 SISRFNLGQKYK 242
>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B,
chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1
Length = 240
Score = 219 bits (558), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 105/192 (54%), Positives = 135/192 (70%), Gaps = 10/192 (5%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL VGLGNPG+KY GTRHNVGFEMID A +G+ MNT+ KA G G + D P+LLAK
Sbjct: 45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAK 104
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
PQTYMN SGES G LA++Y++PL +L+ +D+M LP GVLRL+ GG G HNG+KSVM +
Sbjct: 105 PQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGH 164
Query: 138 FR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 187
GIG+PPG MD KAFLLQKF+ + +++I+ AL++G E +K L+ G +
Sbjct: 165 LDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQ 224
Query: 188 SARHFNTIQKYK 199
FN +QKYK
Sbjct: 225 GISRFNLVQKYK 236
>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os01g0693900 PE=2 SV=1
Length = 250
Score = 219 bits (558), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/195 (51%), Positives = 141/195 (72%), Gaps = 10/195 (5%)
Query: 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 76
+PWLFVGLGNPG Y+GTRHNVGFEMID AE++GIS++++ KA G+G +GDAP++LA
Sbjct: 54 KPWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLA 113
Query: 77 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMN 136
KPQT+MN SGES G L +Y+K+PLN+VLV +DD+ LP LRL GGHGGHNG++S++N
Sbjct: 114 KPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIIN 173
Query: 137 NFR----------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 186
+ + GIGRPPG+MDP F+L+ FN +E +D A G+E ++++ +G
Sbjct: 174 HLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFN 233
Query: 187 ESARHFNTIQKYKHI 201
+SA + NT Q + +
Sbjct: 234 KSATYVNTAQSSEML 248
>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica
GN=Os03g0347800 PE=2 SV=1
Length = 186
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 95/116 (81%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVL 74
V PWLFVGLGNPG+KY+ TRHNVGF+MID FA+SQGIS+ KA FG+G V PVL
Sbjct: 57 VINPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVL 116
Query: 75 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNG 130
LAKPQTYMNLSGES GPLAAYYKLPLNRVLV DDM LPCGVLRL+ GG+G HNG
Sbjct: 117 LAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172
>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth
PE=3 SV=1
Length = 213
Score = 160 bits (405), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 111/179 (62%), Gaps = 9/179 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
WL VGLGNPG KY G RHNVGF ++D A +G A + VGDAPV+LAKP
Sbjct: 35 WLVVGLGNPGPKYAGNRHNVGFMVVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAKP 94
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
+YMNLSG L+A+YK+P++R++V HD++ +P L+L+ GG GHNGL+S+ +
Sbjct: 95 ASYMNLSGGPVAKLSAFYKVPVDRIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL 154
Query: 139 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 188
GIGRPPG+MD +F+LQ F+ R+ +D + + ++ +++ GL ++
Sbjct: 155 GSPDYVRVRVGIGRPPGRMDAASFVLQDFSTAERKELDVHVARAADAVETVVTSGLEKA 213
>sp|A8F920|PTH_BACP2 Peptidyl-tRNA hydrolase OS=Bacillus pumilus (strain SAFR-032)
GN=pth PE=3 SV=1
Length = 188
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 104/182 (57%), Gaps = 9/182 (4%)
Query: 21 FVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQT 80
FVGLGNPG +Y+ TRHNVGF ID ++ I +N FG GFV VLL KP T
Sbjct: 4 FVGLGNPGKEYEKTRHNVGFMTIDELSKKWDIPLNQSKFHGQFGTGFVSGQKVLLVKPLT 63
Query: 81 YMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM----- 135
YMNLSGE PL YY +PL + V +DD+ LP G +RLR G GGHNG+KS++
Sbjct: 64 YMNLSGECVRPLMDYYDIPLEHLKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSLIQHLGS 123
Query: 136 ---NNFR-GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARH 191
+ FR GIGRP M ++L +F+ + I +A+Q VE + L+K E
Sbjct: 124 PEFDRFRIGIGRPQNGMKVVDYVLGRFSEEEQPDIASAIQASVEACEAALTKPFLEVMND 183
Query: 192 FN 193
FN
Sbjct: 184 FN 185
>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 /
DSM 9485) GN=pth PE=3 SV=1
Length = 188
Score = 147 bits (370), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
WL VGLGNPG++Y TRHN+GF ++ AE G++ K+ +G + V L KP
Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKP 61
Query: 79 QTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
QTYMNLSG++ L +YK+ P +LV +DD+ LP LRLR G G HNG++S++
Sbjct: 62 QTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQ 121
Query: 138 F---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 188
GIG+PPGQMD ++L +F + L + +++++S+GLT +
Sbjct: 122 LGTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTAA 181
Query: 189 ARHFNTI 195
+N +
Sbjct: 182 MNRYNPL 188
>sp|Q181A2|PTH_CLOD6 Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630)
GN=pth PE=3 SV=1
Length = 186
Score = 146 bits (369), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 109/184 (59%), Gaps = 9/184 (4%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
++ VGLGNPG KY+ TRHNVGF++ID A+ IS+ + KA G+G VG VLL KP
Sbjct: 2 YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM--- 135
QTYMNLSGE+ + YYK+ L+ ++V +DD+ L G +R+R G G HNG+KS+
Sbjct: 62 QTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSITKCL 121
Query: 136 --NNF----RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
N+F G+ +P D F+L +F + I+ AL++ + + ++ + + S
Sbjct: 122 GSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMSM 181
Query: 190 RHFN 193
+N
Sbjct: 182 NKYN 185
>sp|A0PXL3|PTH_CLONN Peptidyl-tRNA hydrolase OS=Clostridium novyi (strain NT) GN=pth
PE=3 SV=1
Length = 188
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 107/184 (58%), Gaps = 10/184 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGNPG +Y+ TRHNVGF++ID +E I +N K +G G + + V+L KP
Sbjct: 2 FLIVGLGNPGKEYEHTRHNVGFDIIDVISEKYNIDLNKKKFKGMYGDGTIANEKVILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
TYMNLSGES + +YK+P V+V +DD+ L G +R+R G GGHNG+K+++ +F
Sbjct: 62 LTYMNLSGESIKEVTDFYKIPKENVIVIYDDISLEVGRMRIREKGSAGGHNGIKNIIAHF 121
Query: 139 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
G+G+P Q D + +L KFN RE + + + + ++ KG E+
Sbjct: 122 GSDVFPRIKVGVGQPV-QRDLVSHVLGKFNKDDREILSKVFEAASDAAENIIEKGTAEAM 180
Query: 190 RHFN 193
FN
Sbjct: 181 NKFN 184
>sp|Q2J5Z1|PTH_FRASC Peptidyl-tRNA hydrolase OS=Frankia sp. (strain CcI3) GN=pth PE=3
SV=1
Length = 197
Score = 143 bits (361), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 112/190 (58%), Gaps = 15/190 (7%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL GLGNPG Y G RHN GF ++D AE G + + +A + + A +LA+
Sbjct: 10 PWLVAGLGNPGPTYAGNRHNAGFMVVDLLAERTGSRLKSHRSRADVAETRLAGARAVLAR 69
Query: 78 PQTYMNLSGESTGPLAA---YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSV 134
P ++MNLSG GP+AA +YK+ ++R++V HD++ +P G +RL+ GG GHNGL+S+
Sbjct: 70 PLSFMNLSG---GPVAAARSFYKVEVSRLIVVHDELDIPFGAVRLKRGGGDNGHNGLRSI 126
Query: 135 MNNF---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 185
+ GIGRPPG+MDP F+L+ F + R + L+ + +++L++ GL
Sbjct: 127 SSALGTRDYLRVRVGIGRPPGRMDPADFVLRDFTSTERRELPLLLEHAADSVEMLIADGL 186
Query: 186 TESARHFNTI 195
+ ++ +
Sbjct: 187 EPAQNRYHAL 196
>sp|A1TEG1|PTH_MYCVP Peptidyl-tRNA hydrolase OS=Mycobacterium vanbaalenii (strain DSM
7251 / PYR-1) GN=pth PE=3 SV=1
Length = 192
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 117/195 (60%), Gaps = 15/195 (7%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
+A P L VGLGNPG +Y TRHN GF ++D A+ G VH K A G + P
Sbjct: 1 MAEPVLVVGLGNPGPQYATTRHNAGFMVVDILADRMGEKFK-VHKKSGAEVATGRLAGRP 59
Query: 73 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLK 132
V+LAKP+ YMN SG GPLA +Y + V++ HD++ + G +RL+ GG GHNGL+
Sbjct: 60 VVLAKPRVYMNESGRQVGPLAKFYSVAPADVVIVHDELDIDFGRIRLKAGGGVAGHNGLR 119
Query: 133 SVM-----NNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 183
SV N+F+ GIGRPPG +F+L+ FN++ R+ + T L++ + +LL+++
Sbjct: 120 SVASALGGNDFQRVRVGIGRPPGHKSGASFVLENFNSVERKEVPTILEQAADATELLVAQ 179
Query: 184 GLTESARHFNTIQKY 198
GL E A+ NT+ +
Sbjct: 180 GL-EPAQ--NTVHAW 191
>sp|B2TI10|PTH_CLOBB Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Eklund 17B
/ Type B) GN=pth PE=3 SV=1
Length = 191
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 110/192 (57%), Gaps = 11/192 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGNPG KY TRHN+GFE+ID + I +N + +G+GF+ + V+L KP
Sbjct: 2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFRGVYGEGFIANNKVILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
TYMNLSG+S +A +YK+ ++V +DD+ L G LR+R G GGHNG+KS++ N
Sbjct: 62 TTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIANL 121
Query: 139 R---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
G+G+P +D ++L KF+ +E + +++ ++ ++ + + +
Sbjct: 122 STDVFPRIKVGVGQP--NIDLVNYVLGKFSKEEKEVLKESIEVATNSVEEIIKQDVNSAM 179
Query: 190 RHFNTIQKYKHI 201
FN + K I
Sbjct: 180 NKFNGFKANKSI 191
>sp|B2UXS9|PTH_CLOBA Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Alaska E43
/ Type E3) GN=pth PE=3 SV=1
Length = 191
Score = 141 bits (356), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 109/192 (56%), Gaps = 11/192 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGNPG KY TRHN+GFE+ID + I +N K +G+GF+ + V+L KP
Sbjct: 2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFKGVYGEGFIANNKVILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
TYMNLSG+S +A +YK+ ++V +DD+ L G LR+R G GGHNG+KS++ N
Sbjct: 62 TTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIANL 121
Query: 139 R---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
G+G+P + ++L KF+ +E + +++ ++ ++ + + +
Sbjct: 122 STDVFPRIKVGVGQPNDNL--VDYVLGKFSKEEKEVLKESIEAATNSVEEIIKQDINSAM 179
Query: 190 RHFNTIQKYKHI 201
FN + K I
Sbjct: 180 NKFNGFKANKSI 191
>sp|B1IGZ7|PTH_CLOBK Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Okra /
Type B1) GN=pth PE=3 SV=1
Length = 189
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 109/187 (58%), Gaps = 11/187 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 139 R---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
GIG+P + ++L KF+ RE ID L + ++ G+TE+
Sbjct: 122 NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIDKVLAMSAKACISIVEDGVTEAM 179
Query: 190 RHFNTIQ 196
+N ++
Sbjct: 180 NKYNGVK 186
>sp|A7GJW3|PTH_BACCN Peptidyl-tRNA hydrolase OS=Bacillus cereus subsp. cytotoxis (strain
NVH 391-98) GN=pth PE=3 SV=1
Length = 186
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 101/184 (54%), Gaps = 9/184 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGMFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSGES PL YYK+ L ++ +DD+ LP G LRLR G GGHNG+KS + +
Sbjct: 63 TYMNLSGESIRPLMDYYKIDLEDFIIMYDDLDLPVGKLRLRMKGSAGGHNGVKSTIAHLG 122
Query: 139 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
GI RP M ++L +F A ++ A+++ + L+K +
Sbjct: 123 TQEFQRIRMGIDRPKNGMKVVDYVLGRFTAEEMVDVNHAIEKAANACEEWLNKSFLQVMN 182
Query: 191 HFNT 194
FN
Sbjct: 183 DFNN 186
>sp|Q0RCD6|PTH_FRAAA Peptidyl-tRNA hydrolase OS=Frankia alni (strain ACN14a) GN=pth PE=3
SV=1
Length = 197
Score = 140 bits (353), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 106/187 (56%), Gaps = 9/187 (4%)
Query: 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAK 77
PWL VGLGNPG Y G RHN GF ++D AE G + + +A + + +LA+
Sbjct: 10 PWLVVGLGNPGPGYAGNRHNAGFMVVDLLAERAGSRLKSHRSRADVAEVRLAGTRAILAR 69
Query: 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
P ++MNLSG + +YK+ RV+V HD++ +P G +RL+ GG GHNGL+S+ +
Sbjct: 70 PLSFMNLSGGPVSAVRTFYKIDPARVIVVHDELDIPFGSVRLKRGGGDNGHNGLRSISSA 129
Query: 138 F---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 188
GIGRPPG+MDP ++L+ F A R + L+ + +++L++ GL +
Sbjct: 130 LGTRDYLRVRVGIGRPPGRMDPADYVLRDFAAAERRELPLLLEHSADSVEMLITDGLEPT 189
Query: 189 ARHFNTI 195
++ +
Sbjct: 190 QNRYHAL 196
>sp|B9LE93|PTH_CHLSY Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=pth PE=3 SV=1
Length = 188
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
WL VGLGNPG++Y TRHN+GF +D AE G++ + +G + V+LAKP
Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKP 61
Query: 79 QTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
QTYMNLSG++ L +YK+ P +LV +DD+ LP LR+R G G HNG++S++
Sbjct: 62 QTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQ 121
Query: 138 F---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 188
GIG+PPG+MD ++L +F + L + ++++L +GLT +
Sbjct: 122 LGTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTA 181
Query: 189 ARHFNTI 195
+N +
Sbjct: 182 MNRYNPL 188
>sp|A9WBS1|PTH_CHLAA Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=pth PE=3 SV=1
Length = 188
Score = 140 bits (352), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 106/187 (56%), Gaps = 10/187 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
WL VGLGNPG++Y TRHN+GF +D AE G++ + +G + V+LAKP
Sbjct: 2 WLIVGLGNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKP 61
Query: 79 QTYMNLSGESTGPLAAYYKL-PLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNN 137
QTYMNLSG++ L +YK+ P +LV +DD+ LP LR+R G G HNG++S++
Sbjct: 62 QTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQ 121
Query: 138 F---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 188
GIG+PPG+MD ++L +F + L + ++++L +GLT +
Sbjct: 122 LGTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTA 181
Query: 189 ARHFNTI 195
+N +
Sbjct: 182 MNRYNPL 188
>sp|A5I7R5|PTH_CLOBH Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=pth PE=3 SV=1
Length = 189
Score = 140 bits (352), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 11/187 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQHL 121
Query: 139 R---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
GIG+P + ++L KF+ RE I+ L + ++ G+TE+
Sbjct: 122 NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEAM 179
Query: 190 RHFNTIQ 196
+N ++
Sbjct: 180 NKYNGVK 186
>sp|A7FPJ7|PTH_CLOB1 Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain ATCC 19397
/ Type A) GN=pth PE=3 SV=1
Length = 189
Score = 140 bits (352), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 11/187 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRSKGSAGGHNGIKNIIQHL 121
Query: 139 R---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
GIG+P + ++L KF+ RE I+ L + ++ G+TE+
Sbjct: 122 NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEAM 179
Query: 190 RHFNTIQ 196
+N ++
Sbjct: 180 NKYNGVK 186
>sp|C1FNE6|PTH_CLOBJ Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=pth PE=3 SV=1
Length = 189
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 11/187 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 139 R---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
GIG+P + ++L KF+ RE I+ L + ++ G+TE+
Sbjct: 122 NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDEREIIEKVLAMSAKACISIVEDGVTEAM 179
Query: 190 RHFNTIQ 196
+N ++
Sbjct: 180 NKYNGVK 186
>sp|A7GJD4|PTH_CLOBL Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Langeland
/ NCTC 10281 / Type F) GN=pth PE=3 SV=1
Length = 189
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 11/187 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 139 R---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
GIG+P + ++L KF+ RE I+ L + ++ G+TE+
Sbjct: 122 NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEAM 179
Query: 190 RHFNTIQ 196
+N ++
Sbjct: 180 NKYNGVK 186
>sp|B1KTE2|PTH_CLOBM Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Loch Maree
/ Type A3) GN=pth PE=3 SV=1
Length = 189
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 11/187 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKKTRHNIGFDVVDIVAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 139 R---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
GIG+P + ++L KF+ RE I+ L + ++ G+TE+
Sbjct: 122 NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDQREVIEKVLAMSAKACISIVEDGVTEAM 179
Query: 190 RHFNTIQ 196
+N ++
Sbjct: 180 NKYNGVK 186
>sp|C3KW96|PTH_CLOB6 Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain 657 / Type
Ba4) GN=pth PE=3 SV=1
Length = 189
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 109/187 (58%), Gaps = 11/187 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGN G +YK TRHN+GF+++D AE I +N K ++G+G +G+ ++L KP
Sbjct: 2 YLVVGLGNIGKEYKQTRHNIGFDVVDIIAEKYNIEINRQKFKGSYGEGRIGNEKIILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
TYMNLSGES A +YK+ ++V +DDM + G LR+R G GGHNG+K+++ +
Sbjct: 62 STYMNLSGESVIEAANFYKIDKENIIVIYDDMSIDIGKLRVRGKGSAGGHNGIKNIIQHL 121
Query: 139 R---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
GIG+P + ++L KF+ RE I+ L + ++ G+TE+
Sbjct: 122 NSDIFPRVRVGIGQPDENV--VNYVLGKFSKDQREIIEKVLAMSAKACISIVEDGVTEAM 179
Query: 190 RHFNTIQ 196
+N ++
Sbjct: 180 NKYNGVK 186
>sp|A4T6N5|PTH_MYCGI Peptidyl-tRNA hydrolase OS=Mycobacterium gilvum (strain PYR-GCK)
GN=pth PE=3 SV=1
Length = 192
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 115/196 (58%), Gaps = 15/196 (7%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
+A P L VGLGNPG +Y TRHN+GF + D A+ G + VH K A G + P
Sbjct: 1 MAEPVLVVGLGNPGPQYATTRHNIGFMVADVLADRMGETFK-VHKKSGAEVTTGRLAGRP 59
Query: 73 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLK 132
V+LAKP+ YMN SG GPLA +Y + V++ HD++ + G +RL+ GG GHNGL+
Sbjct: 60 VVLAKPRVYMNESGRQVGPLAKFYSIAPTDVVIIHDELDIDFGRIRLKAGGGVAGHNGLR 119
Query: 133 SV-----MNNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 183
SV N+F+ GIGRPPGQ +F+L+ FN+ R + T +++ + +LL+
Sbjct: 120 SVGSALSTNDFQRVRVGIGRPPGQKSGASFVLEPFNSRERPELGTIIEQAADATELLIEL 179
Query: 184 GLTESARHFNTIQKYK 199
G+ E A+ NT+ +
Sbjct: 180 GI-EPAQ--NTVHAWS 192
>sp|Q9F8Q3|PTH_CARHZ Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2
Length = 187
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 107/184 (58%), Gaps = 10/184 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
++ GLGNPG +Y+ TRHN GF ++D A+ GI + K+ G+G + VLL KP
Sbjct: 2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
QTYMNLSG + ++YKLPL+R++V +DD+ LP G +RLR G GGH G+ S+++
Sbjct: 62 QTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL 121
Query: 139 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
GIGR P D K ++LQ F RE ++ L+ E + + L++G ++
Sbjct: 122 GSEEIPRLKIGIGR-PAVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKAM 180
Query: 190 RHFN 193
FN
Sbjct: 181 TDFN 184
>sp|Q63HI2|PTH_BACCZ Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ZK / E33L)
GN=pth PE=3 SV=1
Length = 186
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG+KS +++
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHLG 122
Query: 139 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
GI RP M ++L +F + ++ ++++ + + L+K +
Sbjct: 123 TQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMN 182
Query: 191 HFNT 194
FN+
Sbjct: 183 TFNS 186
>sp|B9IZD4|PTH_BACCQ Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain Q1) GN=pth PE=3
SV=1
Length = 186
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG+KS +++
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHLG 122
Query: 139 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
GI RP M ++L +F + ++ ++++ + + L+K +
Sbjct: 123 TQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMN 182
Query: 191 HFNT 194
FN+
Sbjct: 183 TFNS 186
>sp|Q6MJR3|PTH_BDEBA Peptidyl-tRNA hydrolase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=pth PE=3 SV=1
Length = 187
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/186 (39%), Positives = 107/186 (57%), Gaps = 10/186 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
WL VGLGNPG +YK TRHN+GF +D E G KA Q + D PV+ KP
Sbjct: 2 WLIVGLGNPGGEYKLTRHNIGFMAVDFLMEGLGNPPIKNQFKAEIAQAKIKDHPVIFCKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSV---- 134
QTYMNLSGES PL +YK+PL R++V HD++ P ++++ N GHGGHNG+KS+
Sbjct: 62 QTYMNLSGESVQPLMGFYKIPLERLIVIHDEIDQPFAQMKIQKNRGHGGHNGIKSISGLM 121
Query: 135 --MNNFR---GIGRPPGQMDP-KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 188
M+ R G+GRP P ++L KF ++ L + + ++ ++ G+ ++
Sbjct: 122 GSMDYTRLRLGVGRPANPNIPVPDYVLGKFTKEEFAQMPDFLNKAGDAVESIILDGIQKA 181
Query: 189 ARHFNT 194
+ FNT
Sbjct: 182 STKFNT 187
>sp|Q81J96|PTH_BACCR Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=pth PE=3 SV=2
Length = 186
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG+KS +++
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVMYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHLG 122
Query: 139 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
GI RP M ++L +F + ++ ++++ + + L+K +
Sbjct: 123 TQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMN 182
Query: 191 HFNT 194
FN+
Sbjct: 183 TFNS 186
>sp|Q6HPW6|PTH_BACHK Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=pth PE=3 SV=1
Length = 186
Score = 137 bits (345), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG+KS +++
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHLG 122
Query: 139 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
GI RP M ++L +F + ++ ++++ + + L+K +
Sbjct: 123 TQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMN 182
Query: 191 HFNT 194
FN+
Sbjct: 183 TFNS 186
>sp|Q81VY9|PTH_BACAN Peptidyl-tRNA hydrolase OS=Bacillus anthracis GN=pth PE=3 SV=1
Length = 186
Score = 137 bits (345), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG+KS +++
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHLG 122
Query: 139 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
GI RP M ++L +F + ++ ++++ + + L+K +
Sbjct: 123 TQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMN 182
Query: 191 HFNT 194
FN+
Sbjct: 183 TFNS 186
>sp|Q73FF7|PTH_BACC1 Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 10987)
GN=pth PE=3 SV=2
Length = 186
Score = 137 bits (344), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 104/184 (56%), Gaps = 9/184 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF ID A+ IS+N K FG GFV V+L KP
Sbjct: 3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSGES PL YYK+ + +V +DD+ +P G LRLR G GGHNG+KS +++
Sbjct: 63 TYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHLG 122
Query: 139 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
GI RP M ++L +F + ++ ++++ + + L+K +
Sbjct: 123 TQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPGVNHSIEKAADACEEWLNKPFLQIMN 182
Query: 191 HFNT 194
FN+
Sbjct: 183 TFNS 186
>sp|A6LPJ5|PTH_CLOB8 Peptidyl-tRNA hydrolase OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=pth PE=3 SV=1
Length = 191
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 102/173 (58%), Gaps = 15/173 (8%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGNPG++Y+ TRHN+GF++ID A+ I +N K +G+GF+ V+L KP
Sbjct: 2 FLIVGLGNPGNEYENTRHNIGFKVIDNIAKEYNIEINRQKFKGMYGEGFINGKKVMLLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
TYMNLSGES + +Y L + +LV +DD+ L G LR+R G GGHNG+KS++ +
Sbjct: 62 TTYMNLSGESVREVVDFYNLNNDEILVIYDDISLEVGKLRIREKGSAGGHNGIKSIIAHL 121
Query: 139 R---------GIGRPPGQMDPKAFLLQKF----NAIARERIDTALQEGVEVLK 178
G+G+P G D +L KF AI E I+ + + E++K
Sbjct: 122 NSEIFSRIKVGVGQPNG--DLVKHVLGKFTKEETAILSESIEASTKAAAEIIK 172
>sp|B1YGP7|PTH_EXIS2 Peptidyl-tRNA hydrolase OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=pth PE=3 SV=1
Length = 185
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 93/165 (56%), Gaps = 9/165 (5%)
Query: 21 FVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQT 80
VGLGNPG KY TRHN+GF IDA A+ GI + KA FG G + V+L KP T
Sbjct: 4 IVGLGNPGAKYTNTRHNIGFLAIDALAKEHGIKLTESKFKAVFGTGMIKGERVVLVKPLT 63
Query: 81 YMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF-- 138
YMNLSGE+ PL +YK+ + VLV +DD+ LP +RLR G GGHNG+KS++ +
Sbjct: 64 YMNLSGEAVRPLLDFYKIAVEDVLVIYDDLDLPLEKMRLRSKGSAGGHNGVKSLIQHLGT 123
Query: 139 -------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEV 176
G+GRPP + ++L F + + L + V +
Sbjct: 124 QDIKRLKLGVGRPPAPIQVIDWVLMPFAKSEQTTLQHVLSDSVNI 168
>sp|Q65PG8|PTH_BACLD Peptidyl-tRNA hydrolase OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=pth PE=3 SV=1
Length = 188
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 98/183 (53%), Gaps = 9/183 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
+F GLGNPG Y+ TRHNVGF ID ++ I ++ +G GFV VLL KP
Sbjct: 3 VFAGLGNPGKTYENTRHNVGFMTIDELSKEWNIPLDKTKFNGQYGIGFVSGKKVLLVKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVM---- 135
TYMNLSGE PL YY++P++ + V +DD+ LP G +RLR G GGHNG+KS +
Sbjct: 63 TYMNLSGECLRPLLDYYEIPVDNLKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSTIQHLG 122
Query: 136 ----NNFR-GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
N R GIGRP M ++L F I A+++ + + L K E
Sbjct: 123 TSEFNRIRIGIGRPVNGMKVVDYVLGAFTDEEEPAIKEAVRQSAKACEASLEKPFLEVMN 182
Query: 191 HFN 193
FN
Sbjct: 183 EFN 185
>sp|Q899I4|PTH_CLOTE Peptidyl-tRNA hydrolase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=pth PE=3 SV=1
Length = 188
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 105/187 (56%), Gaps = 11/187 (5%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
+L VGLGNPG +Y+ TRHN+GFE +D + I + K FG G + + V+L KP
Sbjct: 2 FLLVGLGNPGKEYEKTRHNIGFEAVDKISYEYNIPIKRERFKGVFGDGRISNEKVILLKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
TYMNLSGES + YY +P+ V+V +DD+ L G LR+R G GGHNG+KS++ N
Sbjct: 62 TTYMNLSGESLREIIEYYNIPITNVIVIYDDVDLEVGRLRIRTKGSAGGHNGIKSIIYNL 121
Query: 139 R---------GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
G+G+P Q D + +L KF + I+ L+ E+ ++++G E+
Sbjct: 122 NSEDFIRLRIGVGKP--QRDMVSHVLGKFAKEDEKNIEEVLKIIPELAYTIINQGPQEAM 179
Query: 190 RHFNTIQ 196
+N +
Sbjct: 180 NKYNNFR 186
>sp|Q8XHJ8|PTH_CLOPE Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain 13 /
Type A) GN=pth PE=3 SV=1
Length = 188
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 11/185 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF++ID A I +N K G+GF+ + V+L KP
Sbjct: 3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSGES LA +YKL + ++V +DD+ L G LR+R G GGHNG+KS++ N
Sbjct: 63 TYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLG 122
Query: 139 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
G+G+P + +L KF+ RE I+ + + + ++ ES
Sbjct: 123 GDKFPRVKVGVGQPKDNL--VNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESMN 180
Query: 191 HFNTI 195
FN +
Sbjct: 181 KFNGV 185
>sp|Q0TMG7|PTH_CLOP1 Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=pth PE=3 SV=1
Length = 188
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 11/185 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y+ TRHN+GF++ID A I +N K G+GF+ + V+L KP
Sbjct: 3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSGES LA +YKL + ++V +DD+ L G LR+R G GGHNG+KS++ N
Sbjct: 63 TYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLG 122
Query: 139 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
G+G+P + +L KF+ RE I+ + + + ++ ES
Sbjct: 123 GDKFPRVKVGVGQPKDNL--VNHVLGKFSKEDREHIEKVIPVVSDAIVEIVKNDAKESMN 180
Query: 191 HFNTI 195
FN +
Sbjct: 181 KFNGV 185
>sp|Q3Z8W2|PTH_DEHE1 Peptidyl-tRNA hydrolase OS=Dehalococcoides ethenogenes (strain 195)
GN=pth PE=3 SV=1
Length = 189
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 102/187 (54%), Gaps = 12/187 (6%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L +GLGNPG +Y G RHNVGF+ + FA+ IS + C + G G + D ++LAKPQ
Sbjct: 3 LIIGLGNPGKEYSGNRHNVGFQCLSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKPQ 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR 139
TYMNLSG++ L Y L ++V DD+ LP G +RLR G GGHNG+ S++ +
Sbjct: 63 TYMNLSGKAASQLLRRYNLKAADIIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDIG 122
Query: 140 ---------GIGRPPGQMDPKAF---LLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 187
GIG+P + + +L F RE +D A+ E L LL+ GL
Sbjct: 123 TKEFIRLKIGIGKPDSRNNGTEVVDHVLGNFGGEEREIMDKAITRASEALTCLLTFGLDT 182
Query: 188 SARHFNT 194
++ FN+
Sbjct: 183 ASNRFNS 189
>sp|Q5L3U7|PTH_GEOKA Peptidyl-tRNA hydrolase OS=Geobacillus kaustophilus (strain HTA426)
GN=pth PE=3 SV=1
Length = 186
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 100/183 (54%), Gaps = 9/183 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
LFVGLGNPG +Y+ TRHNVGF +ID A+ +S+ T + FG V V L KP
Sbjct: 3 LFVGLGNPGKEYEQTRHNVGFFVIDELAKRWNVSLKTAKFRGLFGTASVSGEKVALCKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSGE PL YY + ++ V+V +DD+ LP G +RLR G GGHNG+KS++++
Sbjct: 63 TYMNLSGECVRPLMDYYDIAIDDVIVIYDDLDLPPGKIRLRLKGSSGGHNGVKSLIHHLG 122
Query: 139 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
GIGRP G ++L +F + +D A+ + + + +
Sbjct: 123 TEQFKRIRIGIGRPAGGQPVTDYVLGRFTEEEKPAVDKAVLRAADACEQAVKAPFIQVMN 182
Query: 191 HFN 193
FN
Sbjct: 183 DFN 185
>sp|A9KR32|PTH_CLOPH Peptidyl-tRNA hydrolase OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=pth PE=3 SV=1
Length = 191
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 19 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKP 78
++ +GLGNP +Y+ TRHN+GF+ I A+ IS++T KA G+G +G V+LAKP
Sbjct: 2 YIIIGLGNPTREYEATRHNIGFDAITRLADDNNISLDTKKHKAICGKGMIGGEKVILAKP 61
Query: 79 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF 138
QTYMNLSGES L +YK+ ++V +DD+ L G LR+R G GGHNG+K+++ +
Sbjct: 62 QTYMNLSGESVRELIDFYKVTKEEIIVIYDDISLDVGQLRIRTKGSAGGHNGIKNIIAHL 121
Query: 139 ---------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
G+G P D ++L +F I AL++ + + +L G +
Sbjct: 122 GSDEFCRIKIGVGDKPKNWDLADYVLARFPKEEEPAIREALEKVSKACETILRDGAKVAM 181
Query: 190 RHFN 193
FN
Sbjct: 182 NLFN 185
>sp|C0ZHD7|PTH_BREBN Peptidyl-tRNA hydrolase OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=pth PE=3 SV=1
Length = 189
Score = 133 bits (335), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 100/187 (53%), Gaps = 9/187 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
+ +GLGNPG KY+ TRHN GF ID ++ GI + +A G+G + VLL KPQ
Sbjct: 3 VIIGLGNPGKKYEDTRHNAGFMAIDKISDKWGIPVTQNKFRALVGEGRIEGEKVLLVKPQ 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSGES + +YKL + ++V +DD+ LP G LRLR G GGHNG+KS++ +
Sbjct: 63 TYMNLSGESVAEVLKFYKLIPDDLVVIYDDLDLPTGHLRLREKGSAGGHNGIKSMIQHLG 122
Query: 139 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
GI RP ++L F R I A+ + + + +
Sbjct: 123 TQEFKRIKVGISRPEPGRSVSDYVLNTFPVAERADIQEAVSLAADACAMWTRESFLKVMN 182
Query: 191 HFNTIQK 197
HFN+++K
Sbjct: 183 HFNSLKK 189
>sp|P37470|PTH_BACSU Peptidyl-tRNA hydrolase OS=Bacillus subtilis (strain 168) GN=spoVC
PE=3 SV=1
Length = 188
Score = 133 bits (335), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 96/183 (52%), Gaps = 9/183 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
+ GLGNPG Y+ TRHNVGF +ID A+ I +N +G GFV VLL KP
Sbjct: 3 VIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNGLYGTGFVSGKKVLLVKPL 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSGE PL YY + + V +DD+ LP G +RLR G GGHNG+KS++ +
Sbjct: 63 TYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHLG 122
Query: 139 --------RGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR 190
GIGRP M ++L F I+ A+ + V+ + LSK E
Sbjct: 123 TSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVMN 182
Query: 191 HFN 193
FN
Sbjct: 183 EFN 185
>sp|A4J0Q6|PTH_DESRM Peptidyl-tRNA hydrolase OS=Desulfotomaculum reducens (strain MI-1)
GN=pth PE=3 SV=1
Length = 206
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 104/180 (57%), Gaps = 14/180 (7%)
Query: 20 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQ 79
L VGLGNPG +Y TRHN+GF +ID A+ +S KA Q +G V+LAKPQ
Sbjct: 3 LIVGLGNPGTEYAKTRHNIGFMVIDRLADESRVSTEKNQHKAQICQITIGSEKVILAKPQ 62
Query: 80 TYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF- 138
TYMNLSG+S L +YKL + + V DDM LP GVLR+R NG GG GLK+++
Sbjct: 63 TYMNLSGQSVVALMNWYKLSPDELFVITDDMDLPPGVLRIRKNGSAGGQRGLKNIIELLG 122
Query: 139 --------RGIGRPP-GQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 189
GIGRP G +D +L K + E I+ A+Q VE +K+ + +G T++A
Sbjct: 123 TQQFPRMRVGIGRPEHGAVD---HVLGKISEAEAELINPAIQTAVEAVKVWVLEG-TQAA 178
>sp|Q1B425|PTH_MYCSS Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain MCS) GN=pth
PE=3 SV=1
Length = 192
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 105/182 (57%), Gaps = 12/182 (6%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDAP 72
+A P L VGLGNPG Y TRHNVGF + D A G H K A G +
Sbjct: 1 MAEPLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSGFKA-HRKSGADIATGRLAGRA 59
Query: 73 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLK 132
V+LAKP+TYMN SG + GPLA +Y + V+V HD++ + G +RL+ GG GHNGLK
Sbjct: 60 VVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLK 119
Query: 133 SV-----MNNFR----GIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 183
SV +F+ G+GRPPG+ D ++L+ F ++ R + T ++ + +LL+++
Sbjct: 120 SVAAALGTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQ 179
Query: 184 GL 185
GL
Sbjct: 180 GL 181
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,451,894
Number of Sequences: 539616
Number of extensions: 3553170
Number of successful extensions: 7951
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6238
Number of HSP's gapped (non-prelim): 739
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)