Query 028531
Match_columns 208
No_of_seqs 216 out of 1028
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 21:40:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pth_A Peptidyl-tRNA hydrolase 100.0 1.9E-74 6.6E-79 486.7 18.4 178 18-195 2-190 (193)
2 1ryb_A CRS2; alpha-beta, hydro 100.0 2E-74 6.9E-79 490.2 17.3 182 14-195 13-204 (205)
3 4hoy_A PTH, peptidyl-tRNA hydr 100.0 3.2E-74 1.1E-78 485.3 18.4 181 17-197 3-192 (193)
4 2z2i_A PTH, peptidyl-tRNA hydr 100.0 1.4E-74 4.6E-79 486.9 15.9 178 17-194 3-190 (191)
5 4fyj_A PTH, peptidyl-tRNA hydr 100.0 1.1E-73 3.7E-78 483.9 18.4 179 17-195 9-198 (199)
6 3v2i_A PTH, peptidyl-tRNA hydr 100.0 6.7E-73 2.3E-77 485.7 18.4 179 17-195 22-220 (222)
7 3nea_A PTH, peptidyl-tRNA hydr 100.0 2.3E-73 7.8E-78 484.2 13.9 176 17-192 22-207 (207)
8 4fno_A PTH, peptidyl-tRNA hydr 100.0 1.9E-74 6.5E-79 486.9 0.0 179 17-195 3-192 (194)
9 1cfz_A Hydrogenase 2 maturatio 67.8 4.8 0.00016 31.7 3.8 92 18-139 2-105 (162)
10 2e85_A Hydrogenase 3 maturatio 65.5 5.8 0.0002 31.2 3.9 93 17-139 4-105 (159)
11 3pu6_A Uncharacterized protein 55.9 11 0.00037 29.6 3.9 128 18-183 4-147 (157)
12 2jva_A Peptidyl-tRNA hydrolase 55.7 4.7 0.00016 30.4 1.6 26 104-129 2-29 (108)
13 2ea9_A JW2626, hypothetical pr 52.9 14 0.00048 27.7 3.8 29 155-183 37-65 (105)
14 2inw_A Putative structural pro 51.9 18 0.00062 28.1 4.4 29 155-183 51-79 (133)
15 4dh9_Y YAEJ; ribosome, YAEJ, r 50.9 3.9 0.00013 32.1 0.5 26 104-129 2-29 (140)
16 2ba3_A NIKA; dimer, bacterial 46.8 12 0.00042 23.4 2.4 33 141-173 4-37 (51)
17 3utn_X Thiosulfate sulfurtrans 46.2 17 0.00059 31.8 4.0 36 78-113 90-125 (327)
18 1am7_A Lysozyme; glycosidase, 41.3 28 0.00095 27.8 4.1 41 154-194 82-122 (158)
19 4gib_A Beta-phosphoglucomutase 34.8 44 0.0015 26.5 4.4 75 71-171 164-242 (250)
20 4hbl_A Transcriptional regulat 33.5 48 0.0017 24.2 4.2 30 152-181 118-147 (149)
21 2cqq_A RSGI RUH-037, DNAJ homo 31.2 87 0.003 21.4 4.9 40 156-195 9-55 (72)
22 4fhr_A Flagellar motor switch 31.0 88 0.003 24.8 5.6 38 134-179 84-121 (187)
23 3kp7_A Transcriptional regulat 29.5 67 0.0023 23.3 4.4 31 151-181 118-148 (151)
24 3mtn_B UBA80, ubcep1, ubiquiti 29.2 46 0.0016 22.0 3.1 39 92-130 33-85 (85)
25 1lj9_A Transcriptional regulat 28.8 65 0.0022 23.0 4.1 32 151-182 108-139 (144)
26 2l32_A Small archaeal modifier 28.5 40 0.0014 23.1 2.8 32 85-116 19-50 (74)
27 1c8b_A Spore protease; novel f 27.8 46 0.0016 30.1 3.7 126 15-158 111-263 (371)
28 2zet_C Melanophilin; complex, 27.3 46 0.0016 26.2 3.2 21 155-175 14-34 (153)
29 3ddh_A Putative haloacid dehal 26.4 41 0.0014 25.1 2.8 29 85-113 159-189 (234)
30 3fzq_A Putative hydrolase; YP_ 26.3 34 0.0012 27.1 2.4 26 85-110 201-226 (274)
31 3deu_A Transcriptional regulat 26.1 43 0.0015 25.3 2.8 32 151-182 133-164 (166)
32 2llk_A Cyclin-D-binding MYB-li 26.0 1.5E+02 0.0052 20.3 5.4 40 155-194 23-65 (73)
33 3r4c_A Hydrolase, haloacid deh 25.7 34 0.0012 27.2 2.3 25 86-110 196-220 (268)
34 3mpo_A Predicted hydrolase of 24.9 35 0.0012 27.3 2.2 25 85-109 198-222 (279)
35 3dnp_A Stress response protein 24.1 38 0.0013 27.3 2.3 25 85-109 203-227 (290)
36 3dao_A Putative phosphatse; st 23.3 40 0.0014 27.4 2.3 25 85-109 212-236 (283)
37 4dw8_A Haloacid dehalogenase-l 23.3 37 0.0013 27.2 2.0 24 86-109 199-222 (279)
38 2pq0_A Hypothetical conserved 22.9 35 0.0012 27.1 1.8 24 86-109 185-208 (258)
39 3pgv_A Haloacid dehalogenase-l 22.7 42 0.0014 27.2 2.3 26 85-110 210-235 (285)
40 3l7y_A Putative uncharacterize 22.2 43 0.0015 27.5 2.3 24 86-109 230-253 (304)
41 2k9i_A Plasmid PRN1, complete 22.2 71 0.0024 19.6 2.8 30 142-172 1-30 (55)
42 3b64_A Macrophage migration in 22.0 55 0.0019 23.3 2.6 23 92-115 84-106 (112)
43 1j26_A Immature colon carcinom 20.4 53 0.0018 24.6 2.2 21 109-129 14-36 (112)
44 2gxg_A 146AA long hypothetical 20.1 1.1E+02 0.0037 21.7 3.9 27 152-178 116-142 (146)
No 1
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=100.00 E-value=1.9e-74 Score=486.66 Aligned_cols=178 Identities=33% Similarity=0.605 Sum_probs=170.9
Q ss_pred CeeEEEecCccCCcCcccchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCchhcccchhHHHHHHhc
Q 028531 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 96 (208)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~~ 96 (208)
|+|||||||||++|++||||||||++|+||+++++++. +.++.+.++++.+.+++|+|+||+||||+||+||+++++||
T Consensus 2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y 81 (193)
T 2pth_A 2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF 81 (193)
T ss_dssp CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence 68999999999999999999999999999999999986 56788999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchHHHHHhhC----------CCCCCCCCCCccccccccCCHHHHHHH
Q 028531 97 KLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARERI 166 (208)
Q Consensus 97 ki~~~~ilVihDDldlp~G~irlk~~Gs~gGHNGLkSI~~~Lg----------GIGrP~~~~~v~~yVLs~f~~~E~~~l 166 (208)
+|++++|||||||||||+|++|+|.+||+|||||||||+++|| |||||+++.++++|||++|+++|++.|
T Consensus 82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lg~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l 161 (193)
T 2pth_A 82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLI 161 (193)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHH
T ss_pred CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999 999996445689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhhch
Q 028531 167 DTALQEGVEVLKLLLSKGLTESARHFNTI 195 (208)
Q Consensus 167 ~~~i~~a~~~l~~~~~~~~~~amn~~n~~ 195 (208)
+++++.|++|++.|+++++++|||+||.+
T Consensus 162 ~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 190 (193)
T 2pth_A 162 DEAIDEAARCTEMWFTDGLTKATNRLHAF 190 (193)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHhCc
Confidence 99999999999999999999999999974
No 2
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=100.00 E-value=2e-74 Score=490.16 Aligned_cols=182 Identities=56% Similarity=1.043 Sum_probs=168.7
Q ss_pred CCCCCeeEEEecCccCCcCcccchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhcccchhHHHHH
Q 028531 14 AVARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA 93 (208)
Q Consensus 14 ~~~~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~ 93 (208)
.++.++|||||||||++|++||||||||++|+||+++++++.+.++.+.++++.+.+++|+|+||+||||+||+||++++
T Consensus 13 ~~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~ 92 (205)
T 1ryb_A 13 VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLA 92 (205)
T ss_dssp --CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred CCCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHH
Confidence 35678999999999999999999999999999999999998877899999999999999999999999999999999999
Q ss_pred HhcCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchHHHHHhh-C---------CCCCCCCCCCccccccccCCHHHH
Q 028531 94 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNF-R---------GIGRPPGQMDPKAFLLQKFNAIAR 163 (208)
Q Consensus 94 ~~~ki~~~~ilVihDDldlp~G~irlk~~Gs~gGHNGLkSI~~~L-g---------GIGrP~~~~~v~~yVLs~f~~~E~ 163 (208)
+||+|++++|||||||||||+|++|+|.+||+|||||||||+++| | |||||+.+.++++|||++|+++|+
T Consensus 93 ~~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~ 172 (205)
T 1ryb_A 93 AYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 172 (205)
T ss_dssp HHTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred HHhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence 999999999999999999999999999999999999999999999 8 999997556799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHhhch
Q 028531 164 ERIDTALQEGVEVLKLLLSKGLTESARHFNTI 195 (208)
Q Consensus 164 ~~l~~~i~~a~~~l~~~~~~~~~~amn~~n~~ 195 (208)
+.|+++++.|++|++.|+++++++|||+||.+
T Consensus 173 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 204 (205)
T 1ryb_A 173 VQIDTALEQGVDAVRTLVLKGFSGSTERFNLV 204 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----CCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 99999999999999999999999999999963
No 3
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=100.00 E-value=3.2e-74 Score=485.28 Aligned_cols=181 Identities=33% Similarity=0.626 Sum_probs=174.0
Q ss_pred CCeeEEEecCccCCcCcccchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhcccchhHHHHHHh
Q 028531 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (208)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~ 95 (208)
.++|||||||||++|++|||||||+++|+||++++.++.. .++.+.++++.+.+++++|+||+||||+||+||+++++|
T Consensus 3 ~ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~ 82 (193)
T 4hoy_A 3 NISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKF 82 (193)
T ss_dssp CCCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred CceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHH
Confidence 4689999999999999999999999999999999999854 578899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchHHHHHhhC--------CCCCCCCCCCccccccccCCHHHHHHHH
Q 028531 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR--------GIGRPPGQMDPKAFLLQKFNAIARERID 167 (208)
Q Consensus 96 ~ki~~~~ilVihDDldlp~G~irlk~~Gs~gGHNGLkSI~~~Lg--------GIGrP~~~~~v~~yVLs~f~~~E~~~l~ 167 (208)
|+|+++++||||||||||+|++|+|++||+|||||||||+++|| |||||+++.++++|||++|+++|++.++
T Consensus 83 ~ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~lgtdf~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~ 162 (193)
T 4hoy_A 83 YQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMD 162 (193)
T ss_dssp TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHHCSCSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHHHH
T ss_pred cCCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHhccccceEEEeeCCCCCCCCcccccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 9999998888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHhhchhh
Q 028531 168 TALQEGVEVLKLLLSKGLTESARHFNTIQK 197 (208)
Q Consensus 168 ~~i~~a~~~l~~~~~~~~~~amn~~n~~~~ 197 (208)
++++.|+++++.|+++++++|||+||++++
T Consensus 163 ~~i~~a~~~i~~~~~~~~~~amn~~n~~kp 192 (193)
T 4hoy_A 163 GAIDHALSKVKLLVQGQVPQAMNQINAYKP 192 (193)
T ss_dssp HHHHHHHHTHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHhCCCC
Confidence 999999999999999999999999998654
No 4
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=100.00 E-value=1.4e-74 Score=486.88 Aligned_cols=178 Identities=40% Similarity=0.766 Sum_probs=160.4
Q ss_pred CCeeEEEecCccCCcCcccchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhcccchhHHHHHHh
Q 028531 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (208)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~ 95 (208)
.|+|||||||||++|++|||||||+++|+||++++.++.+ .++++.++++.+.+++|+|+||+||||+||+||+++++|
T Consensus 3 ~m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~ 82 (191)
T 2z2i_A 3 EPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKF 82 (191)
T ss_dssp SCEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHH
T ss_pred ccEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHH
Confidence 4789999999999999999999999999999999998865 468899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchHHHHHhhC---------CCCCCCCCCCccccccccCCHHHHHHH
Q 028531 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRPPGQMDPKAFLLQKFNAIARERI 166 (208)
Q Consensus 96 ~ki~~~~ilVihDDldlp~G~irlk~~Gs~gGHNGLkSI~~~Lg---------GIGrP~~~~~v~~yVLs~f~~~E~~~l 166 (208)
|+|++++|||||||||||+|++|+|.+||+|||||||||+++|| |||||+++.++++|||++|+++|++.+
T Consensus 83 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lgt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l 162 (191)
T 2z2i_A 83 YSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV 162 (191)
T ss_dssp TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHTCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTH
T ss_pred hCCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHhCCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999 999996556799999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhhc
Q 028531 167 DTALQEGVEVLKLLLSKGLTESARHFNT 194 (208)
Q Consensus 167 ~~~i~~a~~~l~~~~~~~~~~amn~~n~ 194 (208)
+++++.|++|++.|+++++++|||+||+
T Consensus 163 ~~~i~~a~~a~~~~~~~~~~~amn~~n~ 190 (191)
T 2z2i_A 163 PTICEQAADATELLIEQGMEPAQNRVHA 190 (191)
T ss_dssp HHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence 9999999999999999999999999995
No 5
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=1.1e-73 Score=483.92 Aligned_cols=179 Identities=34% Similarity=0.587 Sum_probs=171.9
Q ss_pred CCeeEEEecCccCCcCcccchHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCchhcccchhHHHHHHh
Q 028531 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (208)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~ 95 (208)
...|||||||||++|++||||||||++|+||++++.++.+ .+|.++++++.+++++++|+||+||||+||+||+++++|
T Consensus 9 ~~~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~ 88 (199)
T 4fyj_A 9 AVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF 88 (199)
T ss_dssp CCCEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred eeeEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHH
Confidence 3569999999999999999999999999999999998764 478899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchHHHHHhhC----------CCCCCCCCCCccccccccCCHHHHHH
Q 028531 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARER 165 (208)
Q Consensus 96 ~ki~~~~ilVihDDldlp~G~irlk~~Gs~gGHNGLkSI~~~Lg----------GIGrP~~~~~v~~yVLs~f~~~E~~~ 165 (208)
|+|++++|||||||||||+|++|+|++||+|||||||||+++|| |||||+.+.++++|||++|+++|++.
T Consensus 89 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~Lgt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 168 (199)
T 4fyj_A 89 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQEL 168 (199)
T ss_dssp TTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHCSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHH
T ss_pred hCCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHhCCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999877789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHhhch
Q 028531 166 IDTALQEGVEVLKLLLSKGLTESARHFNTI 195 (208)
Q Consensus 166 l~~~i~~a~~~l~~~~~~~~~~amn~~n~~ 195 (208)
|+++++.|++|++.|+++++++|||+||+.
T Consensus 169 l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 198 (199)
T 4fyj_A 169 LDTSIDFALGVLPEMLAGDWTRAMQKLHSQ 198 (199)
T ss_dssp HHHHHHHHHHTHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 999999999999999999999999999974
No 6
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=100.00 E-value=6.7e-73 Score=485.65 Aligned_cols=179 Identities=34% Similarity=0.600 Sum_probs=167.0
Q ss_pred CCeeEEEecCccCCcCcccchHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCchhcccchhHHHHHHh
Q 028531 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (208)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~ 95 (208)
.+||||||||||++|++|||||||+++|+||++++.++.+. +|.++++++.+.+++|+|+||+||||+||++|+++++|
T Consensus 22 ~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~ 101 (222)
T 3v2i_A 22 MIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHF 101 (222)
T ss_dssp CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred eEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHHH
Confidence 46899999999999999999999999999999999997654 68899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchHHHHHhhC---------CCCCC----------CCCCCccccccc
Q 028531 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRP----------PGQMDPKAFLLQ 156 (208)
Q Consensus 96 ~ki~~~~ilVihDDldlp~G~irlk~~Gs~gGHNGLkSI~~~Lg---------GIGrP----------~~~~~v~~yVLs 156 (208)
|+|++++|||||||||||+|++|+|.+||+|||||||||+++|| ||||| +.+.++++|||+
T Consensus 102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~Lgt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yVL~ 181 (222)
T 3v2i_A 102 FKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHLSSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLK 181 (222)
T ss_dssp HTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHHTCCCSEEEEEECCCTTTTCC---------CHHHHTTS
T ss_pred hCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHhCCCCeEEEEEEcCCCcccccccccCCCCCcHHHHhcc
Confidence 99999999999999999999999999999999999999999999 99999 555689999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhhch
Q 028531 157 KFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 195 (208)
Q Consensus 157 ~f~~~E~~~l~~~i~~a~~~l~~~~~~~~~~amn~~n~~ 195 (208)
+|+++|++.|+++++.|+++++.|+++++++|||+||+.
T Consensus 182 ~fs~~E~~~l~~~i~~a~~av~~~~~~~~~~amn~~n~~ 220 (222)
T 3v2i_A 182 PPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHRN 220 (222)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 999999999999999999999999999999999999975
No 7
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=100.00 E-value=2.3e-73 Score=484.19 Aligned_cols=176 Identities=31% Similarity=0.573 Sum_probs=170.0
Q ss_pred CCeeEEEecCccCCcCcccchHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCchhcccchhHHHHHHh
Q 028531 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (208)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~ 95 (208)
.|+|||||||||++|++|||||||+++|+||++++.++.+. +|.++++++.+.+++++|+||+||||+||+||+++++|
T Consensus 22 ~~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~ 101 (207)
T 3nea_A 22 KIKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANF 101 (207)
T ss_dssp CCCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHH
T ss_pred CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHH
Confidence 58999999999999999999999999999999999998765 78899999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchHHHHHhhC---------CCCCCCCCCCccccccccCCHHHHHHH
Q 028531 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR---------GIGRPPGQMDPKAFLLQKFNAIARERI 166 (208)
Q Consensus 96 ~ki~~~~ilVihDDldlp~G~irlk~~Gs~gGHNGLkSI~~~Lg---------GIGrP~~~~~v~~yVLs~f~~~E~~~l 166 (208)
|+|++++|||||||||||+|++|+|++||+|||||||||+++|| |||||+.+.++++|||++|+++|++.|
T Consensus 102 yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~Lgt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~l 181 (207)
T 3nea_A 102 YKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHLGTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDI 181 (207)
T ss_dssp HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHTCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHH
T ss_pred hCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999 999998777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHh
Q 028531 167 DTALQEGVEVLKLLLSKGLTESARHF 192 (208)
Q Consensus 167 ~~~i~~a~~~l~~~~~~~~~~amn~~ 192 (208)
+++++.|++|++.|+++++++|||++
T Consensus 182 ~~~i~~a~~a~~~~~~~~~~~amn~~ 207 (207)
T 3nea_A 182 DSAIDNGICFLDDIINYKLEPVMQKL 207 (207)
T ss_dssp HHHHHHHHHTHHHHHTTCCCSCSTTC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHhcC
Confidence 99999999999999999999999874
No 8
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=1.9e-74 Score=486.94 Aligned_cols=179 Identities=34% Similarity=0.586 Sum_probs=170.1
Q ss_pred CCeeEEEecCccCCcCcccchHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCchhcccchhHHHHHHh
Q 028531 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 95 (208)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~ 95 (208)
+|+|||||||||++|++|||||||+++|+||++++.++. +.+|.+.++++.+.+++|+|+||+||||+||+||+++++|
T Consensus 3 mm~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~f 82 (194)
T 4fno_A 3 AVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF 82 (194)
Confidence 368999999999999999999999999999999999876 4578889998888899999999999999999999999999
Q ss_pred cCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchHHHHHhhC----------CCCCCCCCCCccccccccCCHHHHHH
Q 028531 96 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----------GIGRPPGQMDPKAFLLQKFNAIARER 165 (208)
Q Consensus 96 ~ki~~~~ilVihDDldlp~G~irlk~~Gs~gGHNGLkSI~~~Lg----------GIGrP~~~~~v~~yVLs~f~~~E~~~ 165 (208)
|+|++++|||||||||||+|++|+|.+||+|||||||||+++|| |||||+++.++++|||++|+++|++.
T Consensus 83 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~Lgt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 162 (194)
T 4fno_A 83 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQEL 162 (194)
Confidence 99999999999999999999999999999999999999999998 99999655579999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHhhch
Q 028531 166 IDTALQEGVEVLKLLLSKGLTESARHFNTI 195 (208)
Q Consensus 166 l~~~i~~a~~~l~~~~~~~~~~amn~~n~~ 195 (208)
|+++++.|++|++.|+++++++|||+||..
T Consensus 163 l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 192 (194)
T 4fno_A 163 LDTSIDFALGVLPEMLAGDWTRAMQKLHSQ 192 (194)
Confidence 999999999999999999999999999973
No 9
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=67.80 E-value=4.8 Score=31.70 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=53.0
Q ss_pred CeeEEEecCccCCcCcccchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhcccchhHHHHHHhcC
Q 028531 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK 97 (208)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~~k 97 (208)
+.+|+|+|||=. .===+|..++++|.+++..+.. . .. +.+. ..|.-+...++
T Consensus 2 ~ilVlGiGN~l~----gDDG~G~~v~~~L~~~~~~p~~---v-~v-----id~g------------t~~~~l~~~l~--- 53 (162)
T 1cfz_A 2 RILVLGVGNILL----TDEAIGVRIVEALEQRYILPDY---V-EI-----LDGG------------TAGMELLGDMA--- 53 (162)
T ss_dssp CEEEEEESCTTB----GGGGHHHHHHHHHHHHEECCTT---E-EE-----EEEE------------TCCGGGHHHHS---
T ss_pred CEEEEEECCccc----ccccHHHHHHHHHHhhCCCCCC---e-EE-----EECC------------CCHHHHHHHHh---
Confidence 468999999932 2236999999999987543210 0 00 0100 12222222222
Q ss_pred CCCCcEEEEec---cCCCCCceEEEecC--------CCCCCC-CchHHHHHhhC
Q 028531 98 LPLNRVLVFHD---DMGLPCGVLRLRHN--------GGHGGH-NGLKSVMNNFR 139 (208)
Q Consensus 98 i~~~~ilVihD---Dldlp~G~irlk~~--------Gs~gGH-NGLkSI~~~Lg 139 (208)
-.+.+||.| +.+.++|+++.-.. .+...| -|+..+++.+.
T Consensus 54 --~~d~lIiVDA~~~~g~~PGti~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~ 105 (162)
T 1cfz_A 54 --NRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALR 105 (162)
T ss_dssp --SCSEEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHH
T ss_pred --CCCEEEEEEehhhcCCCCCEEEEEchHHcchhccCCcCCCcCCHHHHHHHHH
Confidence 136777778 66889999886321 223345 47777777664
No 10
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=65.51 E-value=5.8 Score=31.21 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=52.5
Q ss_pred CCeeEEEecCccCCcCcccchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhcccchhHHHHHHhc
Q 028531 17 RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 96 (208)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~~ 96 (208)
++.+|+|+|||=. .-==+|..++++|.+.+. . . +.++-=. ..|.-+...++.+
T Consensus 4 M~~lVlGiGN~l~----gDDG~G~~v~~~L~~~~~---~--~--------------v~vid~g----t~~~~l~~~l~~~ 56 (159)
T 2e85_A 4 VTDVLLCVGNSMM----GDDGAGPLLAEKCAAAPK---G--N--------------WVVIDGG----SAPENDIVAIREL 56 (159)
T ss_dssp CCEEEEEECCGGG----GGGGHHHHHHHHHHHSCC---T--T--------------CEEEECT----TCSGGGHHHHHHH
T ss_pred CCEEEEEECCccc----ccccHHHHHHHHHhhhCC---C--C--------------eEEEECC----CCHHHHHHHHhcC
Confidence 3469999999932 223699999999987531 0 0 1111100 1222222222222
Q ss_pred CCCCCcEEEEec--cCCCCCceEEEec------CCC-CCCCCchHHHHHhhC
Q 028531 97 KLPLNRVLVFHD--DMGLPCGVLRLRH------NGG-HGGHNGLKSVMNNFR 139 (208)
Q Consensus 97 ki~~~~ilVihD--Dldlp~G~irlk~------~Gs-~gGHNGLkSI~~~Lg 139 (208)
. -+.+||.| +.+.++|+++.-. .-+ +..+-|+..+++.+.
T Consensus 57 --~-~d~lIiVDA~~~g~~PGti~~~~~~~l~~~~~~s~H~~~l~~~L~~l~ 105 (159)
T 2e85_A 57 --R-PTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK 105 (159)
T ss_dssp --C-CSEEEEEEECCCSSCTTCEEECCHHHHHHTTCBCTTCCBHHHHHHHHH
T ss_pred --C-CCEEEEEEeCCCCCCCCEEEEechhHcccccCCCCCcCCHHHHHHHHh
Confidence 1 24556667 4678899998532 122 333459999998876
No 11
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=55.92 E-value=11 Score=29.59 Aligned_cols=128 Identities=13% Similarity=0.020 Sum_probs=61.6
Q ss_pred CeeEEEecCccCCcCcccchHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCchhcccchhHHHHHHhcC
Q 028531 18 PWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYK 97 (208)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMNlSG~aV~~~~~~~k 97 (208)
..||+|+|||=. .-==+|..++++|++.+. ... . +.+. ..|..+...++..+
T Consensus 4 ~ilVlGiGN~L~----gDDG~G~~v~~~L~~~~p------~v~-v-----id~G------------t~~~~l~~~l~~~~ 55 (157)
T 3pu6_A 4 KKVLLCVGNELR----GDDGVAIALGRLVEEQMP------EWS-V-----FFGY------------DTPESEFGKLRELA 55 (157)
T ss_dssp CEEEEEECCTTB----GGGGHHHHHHHHHHHHCT------TEE-E-----EEEE------------TCGGGGHHHHHHHC
T ss_pred CEEEEEECCccc----ccccHHHHHHHHHHhhCC------CeE-E-----EECC------------CCHHHHHHHHHhcC
Confidence 468999999942 233589999999984321 000 0 0000 12332222333211
Q ss_pred CCCCcEEEEecc-CCCCCceEEEecCC------CCCCCCchHHHHHhhC---------CCCCCCCCCCccccccccCCHH
Q 028531 98 LPLNRVLVFHDD-MGLPCGVLRLRHNG------GHGGHNGLKSVMNNFR---------GIGRPPGQMDPKAFLLQKFNAI 161 (208)
Q Consensus 98 i~~~~ilVihDD-ldlp~G~irlk~~G------s~gGHNGLkSI~~~Lg---------GIGrP~~~~~v~~yVLs~f~~~ 161 (208)
+ +.+||.|= .+.++|+++.-..- -+...-|+..+++.+. ||- |. ..+..+|- ...|++
T Consensus 56 --~-d~lIiVDA~~g~~PGti~~~~~~~~~~~~~s~H~~~l~~~L~~l~~~~p~v~liGie-p~-~~~~~~~g-~~LS~~ 129 (157)
T 3pu6_A 56 --P-DVIVVADAMSGFKEGEIEFLDLSDERTYLYSTHNLPTPILISYLRGICSKTIFLGIS-VL-LENVLHFS-EGLSQG 129 (157)
T ss_dssp --C-SEEEEEEEEEC----CEEEEETTSHHHHHC-----CCHHHHHHHHHHCSEEEEEEEE-EC-GGGGSSCB-CSCCHH
T ss_pred --C-CEEEEEEecCCCCCcEEEEEchhHhcCCCCCCCCCCHHHHHHHHHccCCCEEEEEEE-Ee-ecCCCCCC-CCCCHH
Confidence 2 34555454 47789999875432 1334468888888776 332 11 00111332 245554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 028531 162 ARERIDTALQEGVEVLKLLLSK 183 (208)
Q Consensus 162 E~~~l~~~i~~a~~~l~~~~~~ 183 (208)
+++.++.+++.+..|+..
T Consensus 130 ----V~~av~~a~~~i~~~~~~ 147 (157)
T 3pu6_A 130 ----ASDSAFVALGRIKELDGM 147 (157)
T ss_dssp ----HHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhh
Confidence 444566666667666653
No 12
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=55.69 E-value=4.7 Score=30.37 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=21.1
Q ss_pred EEEeccCCCCCceEEEe--cCCCCCCCC
Q 028531 104 LVFHDDMGLPCGVLRLR--HNGGHGGHN 129 (208)
Q Consensus 104 lVihDDldlp~G~irlk--~~Gs~gGHN 129 (208)
|.|.+++++|...++++ +.+|+||+|
T Consensus 2 l~i~~~i~I~~~dl~~~~~RssGpGGQn 29 (108)
T 2jva_A 2 LVISNNVHLPDAEIELTAIRAQGAGGQN 29 (108)
T ss_dssp EECSSSCEECGGGEEEEECCCTTCSSSS
T ss_pred cccccccccChHHEEEEEEECCCCCCCC
Confidence 45678899999988887 578899986
No 13
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A
Probab=52.91 E-value=14 Score=27.74 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=26.1
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 028531 155 LQKFNAIARERIDTALQEGVEVLKLLLSK 183 (208)
Q Consensus 155 Ls~f~~~E~~~l~~~i~~a~~~l~~~~~~ 183 (208)
-+.||++|...|+++++...+-+|..+..
T Consensus 37 ~G~Fs~~~~~~Ld~aFP~~ikqlE~mL~s 65 (105)
T 2ea9_A 37 TGKFSDAECPKLDVVFPHFISQIESMLTT 65 (105)
T ss_dssp ESCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEecCHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 38999999999999999999999988764
No 14
>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A
Probab=51.91 E-value=18 Score=28.12 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=26.1
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 028531 155 LQKFNAIARERIDTALQEGVEVLKLLLSK 183 (208)
Q Consensus 155 Ls~f~~~E~~~l~~~i~~a~~~l~~~~~~ 183 (208)
-+.||++|...|+++++...+-+|..+..
T Consensus 51 ~G~Fs~~~~~~Ld~aFP~~ikQlE~mL~s 79 (133)
T 2inw_A 51 RGRFSDVDAYHLDQAFPLLMKQLELMLTG 79 (133)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEecCHHHHHHHHHHhHHHHHHHHHHhcc
Confidence 38999999999999999999999988764
No 15
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=50.92 E-value=3.9 Score=32.14 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=21.5
Q ss_pred EEEeccCCCCCceEEEe--cCCCCCCCC
Q 028531 104 LVFHDDMGLPCGVLRLR--HNGGHGGHN 129 (208)
Q Consensus 104 lVihDDldlp~G~irlk--~~Gs~gGHN 129 (208)
|.|.+++++|...+++. ..+|+||+|
T Consensus 2 ~~i~~~i~I~~~el~~~~~RssGpGGQn 29 (140)
T 4dh9_Y 2 IVISRHVAIPDGELEITAIRAQGAGGQH 29 (140)
T ss_dssp CCCCSSSCCCTTCSEEEEECCCSSSSHH
T ss_pred ccccCCCccChHHeEEEEEECCCCCCCc
Confidence 56788999999988887 578899976
No 16
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=46.81 E-value=12 Score=23.44 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=22.1
Q ss_pred CCCCCCCCCcc-ccccccCCHHHHHHHHHHHHHH
Q 028531 141 IGRPPGQMDPK-AFLLQKFNAIARERIDTALQEG 173 (208)
Q Consensus 141 IGrP~~~~~v~-~yVLs~f~~~E~~~l~~~i~~a 173 (208)
.|||.+..... ..+-=+++++|.+.|++....+
T Consensus 4 ~~R~k~~~r~r~~~i~vRlt~eE~~~l~~~A~~~ 37 (51)
T 2ba3_A 4 AVRKKSEVRQKTVVRTLRFSPVEDETIRKKAEDS 37 (51)
T ss_dssp TTBCTTCCCCCSEEEEEEECHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcCceeEEEEECHHHHHHHHHHHHHh
Confidence 57886542333 3444589999999998765554
No 17
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=46.20 E-value=17 Score=31.78 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=29.5
Q ss_pred CCchhcccchhHHHHHHhcCCCCCcEEEEeccCCCC
Q 028531 78 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLP 113 (208)
Q Consensus 78 P~TyMNlSG~aV~~~~~~~ki~~~~ilVihDDldlp 113 (208)
|...|=-|-+...+.++..+|..++.||||||-+.-
T Consensus 90 ~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~ 125 (327)
T 3utn_X 90 PYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNF 125 (327)
T ss_dssp SSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSS
T ss_pred CCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCc
Confidence 445566677888889999999999999999997654
No 18
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=41.29 E-value=28 Score=27.78 Aligned_cols=41 Identities=7% Similarity=0.142 Sum_probs=31.8
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhhc
Q 028531 154 LLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 194 (208)
Q Consensus 154 VLs~f~~~E~~~l~~~i~~a~~~l~~~~~~~~~~amn~~n~ 194 (208)
=|..|+|+-++.+.-.+-+-..++..+.+.+++.||+++..
T Consensus 82 gl~~F~P~~QD~~A~~Li~~rgal~~i~~G~i~~a~~~la~ 122 (158)
T 1am7_A 82 GLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSN 122 (158)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTTCHHHHHHTCHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHcCcHHHHHcCCHHHHHHHhcc
Confidence 36689999999886544444567888889999999998874
No 19
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=34.78 E-value=44 Score=26.48 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=44.2
Q ss_pred eeEEEEeCCchhcccchhHHHHHHhcCCCCCcEEEEeccCCCCCceEEEecCCCCCCCCchHHHHHhhC----CCCCCCC
Q 028531 71 APVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFR----GIGRPPG 146 (208)
Q Consensus 71 ~~v~L~kP~TyMNlSG~aV~~~~~~~ki~~~~ilVihDDldlp~G~irlk~~Gs~gGHNGLkSI~~~Lg----GIGrP~~ 146 (208)
..+-..||.. +....+++.++++|+++|+|=|.. .+ ++. .+..| ||+.+..
T Consensus 164 ~~~~~~KP~p------~~~~~a~~~lg~~p~e~l~VGDs~---~D---------------i~a-A~~aG~~~i~v~~~~~ 218 (250)
T 4gib_A 164 GKCKNNKPHP------EIFLMSAKGLNVNPQNCIGIEDAS---AG---------------IDA-INSANMFSVGVGNYEN 218 (250)
T ss_dssp GGCCSCTTSS------HHHHHHHHHHTCCGGGEEEEESSH---HH---------------HHH-HHHTTCEEEEESCTTT
T ss_pred cccCCCCCcH------HHHHHHHHHhCCChHHeEEECCCH---HH---------------HHH-HHHcCCEEEEECChhH
Confidence 3444456643 455677888899999999887742 11 111 11223 7776543
Q ss_pred CCCccccccccCCHHHHHHHHHHHH
Q 028531 147 QMDPKAFLLQKFNAIARERIDTALQ 171 (208)
Q Consensus 147 ~~~v~~yVLs~f~~~E~~~l~~~i~ 171 (208)
..-+|||...+++-..+.|.+.++
T Consensus 219 -~~~ad~vi~~l~eL~~~~i~~~~n 242 (250)
T 4gib_A 219 -LKKANLVVDSTNQLKFEYIQEKYN 242 (250)
T ss_dssp -TTTSSEEESSGGGCCHHHHHHHHH
T ss_pred -hccCCEEECChHhCCHHHHHHHHH
Confidence 234799999886544455544433
No 20
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=33.52 E-value=48 Score=24.18 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=25.5
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 028531 152 AFLLQKFNAIARERIDTALQEGVEVLKLLL 181 (208)
Q Consensus 152 ~yVLs~f~~~E~~~l~~~i~~a~~~l~~~~ 181 (208)
+++++.|+++|++.+..++.+..+.++.+.
T Consensus 118 ~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 147 (149)
T 4hbl_A 118 SCLPQEFDTTEYDETKYVFEELEQTLKHLI 147 (149)
T ss_dssp TTSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 458899999999999999998888877654
No 21
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=31.22 E-value=87 Score=21.39 Aligned_cols=40 Identities=8% Similarity=0.131 Sum_probs=29.0
Q ss_pred ccCCHHHHHHHHHHHHHH-------HHHHHHHHhcCHHHHHHHhhch
Q 028531 156 QKFNAIARERIDTALQEG-------VEVLKLLLSKGLTESARHFNTI 195 (208)
Q Consensus 156 s~f~~~E~~~l~~~i~~a-------~~~l~~~~~~~~~~amn~~n~~ 195 (208)
+.||.+|.+.|++++... .+.|...+....+.+.++|+..
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L 55 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 579999999999887654 4445555566778888877753
No 22
>4fhr_A Flagellar motor switch protein FLIM; motor protein; 1.93A {Thermotoga maritima} PDB: 3soh_A 2hp7_A
Probab=31.04 E-value=88 Score=24.84 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=27.8
Q ss_pred HHHhhCCCCCCCCCCCccccccccCCHHHHHHHHHHHHHHHHHHHH
Q 028531 134 VMNNFRGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKL 179 (208)
Q Consensus 134 I~~~LgGIGrP~~~~~v~~yVLs~f~~~E~~~l~~~i~~a~~~l~~ 179 (208)
|..-+||-|+++.+ ..||+-|+..++.+++.+.++++.
T Consensus 84 vD~l~GG~G~~~~~--------R~~T~iE~~ii~~i~~~~~~~l~~ 121 (187)
T 4fhr_A 84 LDIIMGGPGENPPN--------RPPTEIETSIMRKEVTNMLTLLAQ 121 (187)
T ss_dssp HHHHTTSCCCSCCC--------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCC--------CcCcHHHHHHHHHHHHHHHHHHHH
Confidence 34556788875432 479999999999998888776653
No 23
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=29.49 E-value=67 Score=23.31 Aligned_cols=31 Identities=10% Similarity=0.058 Sum_probs=22.8
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 028531 151 KAFLLQKFNAIARERIDTALQEGVEVLKLLL 181 (208)
Q Consensus 151 ~~yVLs~f~~~E~~~l~~~i~~a~~~l~~~~ 181 (208)
.+-+++.|+++|++.+..++.+..+.++.+.
T Consensus 118 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 148 (151)
T 3kp7_A 118 ASDMTSDFDSKEIEKVRQVLEIIDYRIQSYT 148 (151)
T ss_dssp HHHTTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888888777777666554
No 24
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=29.23 E-value=46 Score=21.96 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=17.8
Q ss_pred HHHhcCCCCCcEEEEe------ccCC-----CCCc---eEEEecCCCCCCCCc
Q 028531 92 LAAYYKLPLNRVLVFH------DDMG-----LPCG---VLRLRHNGGHGGHNG 130 (208)
Q Consensus 92 ~~~~~ki~~~~ilVih------DDld-----lp~G---~irlk~~Gs~gGHNG 130 (208)
+.+..++|+++.-++| ||.. +.-| .+-+|..|+.||+.|
T Consensus 33 i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ggg~~ 85 (85)
T 3mtn_B 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGGGGSG 85 (85)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC------
T ss_pred HHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCCCCCC
Confidence 4567788887654444 3322 2222 233466777777765
No 25
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.77 E-value=65 Score=22.99 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=25.3
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHh
Q 028531 151 KAFLLQKFNAIARERIDTALQEGVEVLKLLLS 182 (208)
Q Consensus 151 ~~yVLs~f~~~E~~~l~~~i~~a~~~l~~~~~ 182 (208)
.+.+++.++++|.+.+.+++.+..+.++..++
T Consensus 108 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 139 (144)
T 1lj9_A 108 NQVALQGLSEVEISQLADYLVRMRKNVSEDWE 139 (144)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46678899999999998888888877766543
No 26
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=28.47 E-value=40 Score=23.05 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=27.8
Q ss_pred cchhHHHHHHhcCCCCCcEEEEeccCCCCCce
Q 028531 85 SGESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 116 (208)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVihDDldlp~G~ 116 (208)
.|..|+.+++.++++++.++|+.+.--+|...
T Consensus 19 ~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 19 DDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp TTCSHHHHHHTTCCCSSCCCEECCCCCCCTTS
T ss_pred CCCcHHHHHHHcCCCcceEEEEECCEECCHHH
Confidence 46689999999999999999999887777776
No 27
>1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium} SCOP: c.56.1.2
Probab=27.82 E-value=46 Score=30.11 Aligned_cols=126 Identities=21% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCCCeeEEEecCccCCcCcccchHHHHHHHHHHHHcCCCCCccccceEEEEEEE--CCeeEEEEeC----Cchhcccchh
Q 028531 15 VARPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFV--GDAPVLLAKP----QTYMNLSGES 88 (208)
Q Consensus 15 ~~~~~LIvGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~k~~~~~~~~~~--~~~~v~L~kP----~TyMNlSG~a 88 (208)
.....|||||||.- -|--..|-.+++.|. ++ +.-+. ++...+ .-..|.-+-| +|=||. ++.
T Consensus 111 ~~~~iLVVGLGN~~----vTpDALGP~Vv~~l~----vT--rHl~~--~g~~~~~~~~~pVsAiaPGVmg~TGiEt-~Ei 177 (371)
T 1c8b_A 111 DDASCLVVGLGNLS----VTPDALGPKAVDNLL----IT--RHLFE--LQPESVQDGFRPVSAIVPGVMGMTGIET-SDI 177 (371)
T ss_dssp TTCCEEEEECSCSS----SGGGCHHHHHHTTCC----CC--HHHHH--HSCCSSCSSCCCEEEECSGGGCCCSSCH-HHH
T ss_pred CCCcEEEEEcCCCC----cCccccCcceeeeee----EE--eehhh--hCchhhccCCCceEEecCCccccccccH-HHH
Confidence 34568999999974 588999999998653 11 11010 111000 1134555556 455553 356
Q ss_pred HHHHHHhcCCCCCcEEEEeccCCC----CCc-eEEEecCC---CC--CCC-CchHHHHHhhC----CCCCCCCC------
Q 028531 89 TGPLAAYYKLPLNRVLVFHDDMGL----PCG-VLRLRHNG---GH--GGH-NGLKSVMNNFR----GIGRPPGQ------ 147 (208)
Q Consensus 89 V~~~~~~~ki~~~~ilVihDDldl----p~G-~irlk~~G---s~--gGH-NGLkSI~~~Lg----GIGrP~~~------ 147 (208)
|+.+.+.++ .+++|.-|-|-. -+| +|.|.-.| |+ |-| ++|- -+.|| .||=|.-=
T Consensus 178 I~gIv~k~k---Pd~VIAIDALAars~~Rl~~TIQIsdTGI~PGSGVGN~R~~ls--~etLGVPVIAIGVPTVVdA~tI~ 252 (371)
T 1c8b_A 178 IFGVVKKVN---PDFIIAIDALAARSIERVNATIQISDSGIHPGSGVGNKRKEIS--YETLGIPVIAIGIPTVVDAVSIT 252 (371)
T ss_dssp HHHHHHHHC---CSEEEEEEEECCSSGGGSSSEEEEETTCBCSCSSSSCCCCBSS--SCCC---------CCCEEEEEEE
T ss_pred HHHHHHhcC---CCEEEEEchhhcCcHhhcCCeEEECCCCCCCCcCCCccccccC--HHHcCCCEEEEcCCceechHHHH
Confidence 777777776 468888888554 356 78877655 22 343 3322 24556 67766420
Q ss_pred CCccccccccC
Q 028531 148 MDPKAFLLQKF 158 (208)
Q Consensus 148 ~~v~~yVLs~f 158 (208)
.|..+|++..|
T Consensus 253 ~Dtid~~~~~~ 263 (371)
T 1c8b_A 253 SDTIDFILKHF 263 (371)
T ss_dssp CCEESCCCHHH
T ss_pred HHHHHHHHHHH
Confidence 13446666544
No 28
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.35 E-value=46 Score=26.17 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=18.5
Q ss_pred cccCCHHHHHHHHHHHHHHHH
Q 028531 155 LQKFNAIARERIDTALQEGVE 175 (208)
Q Consensus 155 Ls~f~~~E~~~l~~~i~~a~~ 175 (208)
||.+|++|++.|.+++.+..+
T Consensus 14 Ls~LteeEr~~Il~VL~Rd~~ 34 (153)
T 2zet_C 14 LSTLTDEEAEHVWAVVQRDFD 34 (153)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhHHH
Confidence 799999999999999988654
No 29
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=26.43 E-value=41 Score=25.09 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=25.7
Q ss_pred cchhHHHHHHhcCCCCCcEEEEeccC--CCC
Q 028531 85 SGESTGPLAAYYKLPLNRVLVFHDDM--GLP 113 (208)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVihDDl--dlp 113 (208)
++.++..+++.++++++++++|=|.+ |+.
T Consensus 159 k~~~~~~~~~~lgi~~~~~i~iGD~~~~Di~ 189 (234)
T 3ddh_A 159 TEKEYLRLLSILQIAPSELLMVGNSFKSDIQ 189 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEEESCCCCCCH
T ss_pred CHHHHHHHHHHhCCCcceEEEECCCcHHHhH
Confidence 67888899999999999999999996 665
No 30
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=26.34 E-value=34 Score=27.06 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.6
Q ss_pred cchhHHHHHHhcCCCCCcEEEEeccC
Q 028531 85 SGESTGPLAAYYKLPLNRVLVFHDDM 110 (208)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVihDDl 110 (208)
-|.++..+++.++++++++++|=|..
T Consensus 201 K~~~l~~l~~~lgi~~~~~i~~GD~~ 226 (274)
T 3fzq_A 201 KGKAIKRLQERLGVTQKETICFGDGQ 226 (274)
T ss_dssp HHHHHHHHHHHHTCCSTTEEEECCSG
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCCh
Confidence 46778899999999999999999853
No 31
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=26.13 E-value=43 Score=25.26 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=23.5
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHh
Q 028531 151 KAFLLQKFNAIARERIDTALQEGVEVLKLLLS 182 (208)
Q Consensus 151 ~~yVLs~f~~~E~~~l~~~i~~a~~~l~~~~~ 182 (208)
.+-+++.|+++|++.+..++.+..+.++.+..
T Consensus 133 ~~~~~~~l~~~e~~~l~~~L~~l~~~l~~~~~ 164 (166)
T 3deu_A 133 RGEILAGISSEEIELLIKLIAKLEHNIMELHS 164 (166)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677888999988888888887777765543
No 32
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=25.96 E-value=1.5e+02 Score=20.26 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=24.8
Q ss_pred cccCCHHHHHHHHHHHHHH---HHHHHHHHhcCHHHHHHHhhc
Q 028531 155 LQKFNAIARERIDTALQEG---VEVLKLLLSKGLTESARHFNT 194 (208)
Q Consensus 155 Ls~f~~~E~~~l~~~i~~a---~~~l~~~~~~~~~~amn~~n~ 194 (208)
-++||+||-+.|-+++..- ...|...+...-..+.|+++.
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~~ 65 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRL 65 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4799999998887766542 222222225556666666664
No 33
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=25.74 E-value=34 Score=27.17 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=22.5
Q ss_pred chhHHHHHHhcCCCCCcEEEEeccC
Q 028531 86 GESTGPLAAYYKLPLNRVLVFHDDM 110 (208)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVihDDl 110 (208)
|.++..+++.+++++++++.|=|..
T Consensus 196 ~~~l~~l~~~lgi~~~~~ia~GD~~ 220 (268)
T 3r4c_A 196 ATGLSLFADYYRVKVSEIMACGDGG 220 (268)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHcCCCHHHEEEECCcH
Confidence 5889999999999999999999953
No 34
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=24.88 E-value=35 Score=27.27 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=20.7
Q ss_pred cchhHHHHHHhcCCCCCcEEEEecc
Q 028531 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (208)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVihDD 109 (208)
-|.++..+++.++++++++++|=|.
T Consensus 198 K~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 3mpo_A 198 KGGTLSELVDQLGLTADDVMTLGDQ 222 (279)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEC--C
T ss_pred hHHHHHHHHHHcCCCHHHEEEECCc
Confidence 4788899999999999999999984
No 35
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=24.15 E-value=38 Score=27.25 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.4
Q ss_pred cchhHHHHHHhcCCCCCcEEEEecc
Q 028531 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (208)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVihDD 109 (208)
-|.++..+++.++++++++++|=|.
T Consensus 203 K~~~l~~l~~~lgi~~~~~i~~GD~ 227 (290)
T 3dnp_A 203 KEAGLALVASELGLSMDDVVAIGHQ 227 (290)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCc
Confidence 4678899999999999999999994
No 36
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=23.33 E-value=40 Score=27.40 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=22.2
Q ss_pred cchhHHHHHHhcCCCCCcEEEEecc
Q 028531 85 SGESTGPLAAYYKLPLNRVLVFHDD 109 (208)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVihDD 109 (208)
-|.++..+++.++++++++++|=|.
T Consensus 212 K~~~l~~l~~~lgi~~~e~ia~GD~ 236 (283)
T 3dao_A 212 KWTALSYLIDRFDLLPDEVCCFGDN 236 (283)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCC
Confidence 3568899999999999999999994
No 37
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=23.29 E-value=37 Score=27.18 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.3
Q ss_pred chhHHHHHHhcCCCCCcEEEEecc
Q 028531 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (208)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVihDD 109 (208)
|.++..+++.++++++++++|=|.
T Consensus 199 ~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 4dw8_A 199 ALSLSVLLENIGMTREEVIAIGDG 222 (279)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECS
T ss_pred HHHHHHHHHHcCCCHHHEEEECCC
Confidence 788999999999999999999994
No 38
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=22.88 E-value=35 Score=27.08 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.4
Q ss_pred chhHHHHHHhcCCCCCcEEEEecc
Q 028531 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (208)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVihDD 109 (208)
|.++..+++.+++++++++++=|.
T Consensus 185 ~~~l~~l~~~lgi~~~~~ia~GDs 208 (258)
T 2pq0_A 185 AEGIRMMIEKLGIDKKDVYAFGDG 208 (258)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCS
T ss_pred HHHHHHHHHHhCCCHHHEEEECCc
Confidence 567889999999999999999984
No 39
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=22.65 E-value=42 Score=27.24 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.8
Q ss_pred cchhHHHHHHhcCCCCCcEEEEeccC
Q 028531 85 SGESTGPLAAYYKLPLNRVLVFHDDM 110 (208)
Q Consensus 85 SG~aV~~~~~~~ki~~~~ilVihDDl 110 (208)
-|.++..+++.++++++++++|=|..
T Consensus 210 K~~al~~l~~~lgi~~~~~ia~GD~~ 235 (285)
T 3pgv_A 210 KGHALEAVAKMLGYTLSDCIAFGDGM 235 (285)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred hHHHHHHHHHHhCCCHHHEEEECCcH
Confidence 36788999999999999999999953
No 40
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=22.24 E-value=43 Score=27.52 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=21.7
Q ss_pred chhHHHHHHhcCCCCCcEEEEecc
Q 028531 86 GESTGPLAAYYKLPLNRVLVFHDD 109 (208)
Q Consensus 86 G~aV~~~~~~~ki~~~~ilVihDD 109 (208)
|.++..+++.++++++++++|=|.
T Consensus 230 ~~al~~l~~~lgi~~~e~i~~GDs 253 (304)
T 3l7y_A 230 GWALQQLLKRWNFTSDHLMAFGDG 253 (304)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHhCcCHHHEEEECCC
Confidence 568899999999999999999994
No 41
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=22.16 E-value=71 Score=19.56 Aligned_cols=30 Identities=20% Similarity=0.115 Sum_probs=18.5
Q ss_pred CCCCCCCCccccccccCCHHHHHHHHHHHHH
Q 028531 142 GRPPGQMDPKAFLLQKFNAIARERIDTALQE 172 (208)
Q Consensus 142 GrP~~~~~v~~yVLs~f~~~E~~~l~~~i~~ 172 (208)
|||.... -..-+-=.+++++.+.|+.....
T Consensus 1 GRP~~~~-~~~~i~vrl~~el~~~l~~~a~~ 30 (55)
T 2k9i_A 1 GRPYKLL-NGIKLGVYIPQEWHDRLMEIAKE 30 (55)
T ss_dssp CCCSSTT-CCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCCCC-ccceEEEEcCHHHHHHHHHHHHH
Confidence 8885321 12233447888888888876544
No 42
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=21.99 E-value=55 Score=23.28 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=18.9
Q ss_pred HHHhcCCCCCcEEEEeccCCCCCc
Q 028531 92 LAAYYKLPLNRVLVFHDDMGLPCG 115 (208)
Q Consensus 92 ~~~~~ki~~~~ilVihDDldlp~G 115 (208)
+.+..+++++++.|+.+|++ .+|
T Consensus 84 l~~~lgi~~~~v~I~~~e~~-~wg 106 (112)
T 3b64_A 84 ITKECGIVADRIFVLYFSPL-HCG 106 (112)
T ss_dssp HHHHHCCCGGGEEEEEECCS-CCE
T ss_pred HHHHhCcCcceEEEEEEEhh-Hee
Confidence 34567999999999999998 665
No 43
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=20.37 E-value=53 Score=24.64 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=14.6
Q ss_pred cCCCCCceEEEe--cCCCCCCCC
Q 028531 109 DMGLPCGVLRLR--HNGGHGGHN 129 (208)
Q Consensus 109 Dldlp~G~irlk--~~Gs~gGHN 129 (208)
++++|...++++ +.+|+||+|
T Consensus 14 ~i~I~~~dl~~~~~RssGpGGQn 36 (112)
T 1j26_A 14 SSYIPLDRLSISYCRSSGPGGQN 36 (112)
T ss_dssp CCCCCTTTSEEEEECCCCSSSSC
T ss_pred EEecChHHeEEEEEECCCCCCCC
Confidence 455666666555 688899986
No 44
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=20.11 E-value=1.1e+02 Score=21.69 Aligned_cols=27 Identities=0% Similarity=-0.103 Sum_probs=18.8
Q ss_pred ccccccCCHHHHHHHHHHHHHHHHHHH
Q 028531 152 AFLLQKFNAIARERIDTALQEGVEVLK 178 (208)
Q Consensus 152 ~yVLs~f~~~E~~~l~~~i~~a~~~l~ 178 (208)
+-+++.++++|.+.+.+++.+..+.++
T Consensus 116 ~~~~~~l~~~e~~~l~~~l~~~~~~l~ 142 (146)
T 2gxg_A 116 NEVTGDLSEDEVILVLDKISKILKRIE 142 (146)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 446677788887777777777666554
Done!