BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028533
(208 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYL9|RK13_ARATH 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana
GN=RPL13 PE=1 SV=1
Length = 241
Score = 270 bits (690), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 129/178 (72%), Positives = 145/178 (81%), Gaps = 9/178 (5%)
Query: 38 TPFLGFSVASAKSTSP-----LNTKRSFKVRC----CQNLSLVPDNQRWMFEQSEVNGPD 88
+PFLGFS+ + S N+KR +V+C SLVP NQRWMF++ E NGPD
Sbjct: 26 SPFLGFSLTAISKPSVRVGIYANSKRGLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPD 85
Query: 89 IWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVI 148
IWN TWYPKA+DH ++DK W+VVDATDKILGRLASTIA HIRGKNLA+YTPSVDMGA+VI
Sbjct: 86 IWNTTWYPKASDHVNTDKPWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVI 145
Query: 149 VVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGR 206
VVNAEKVAVSGKKR QK+YRRHSGRPGGM ETFDQLQ RIPERI+EHAVRGMLPKGR
Sbjct: 146 VVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGR 203
>sp|P12629|RK13_SPIOL 50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea
GN=RPL13 PE=1 SV=1
Length = 250
Score = 253 bits (645), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 136/222 (61%), Positives = 155/222 (69%), Gaps = 26/222 (11%)
Query: 1 MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFSVASA---------KST 51
MAT+ + + F S Q+ S GT + TP L F + KST
Sbjct: 1 MATMACASSLTFPSAQTQKSF-------FGTNVKQ--TPVLSFPRPTVAAAVAVSARKST 51
Query: 52 SPLNTK-----RSFKVRCCQNLSL--VPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHS 104
S +TK R K + ++ VP +QRWMF E GPDIWN TWYPK+ADH +
Sbjct: 52 S-ASTKCTEEWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPT 110
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
DK WYVVDATD ILGR+ASTIAIHIRGKNLA+YTPSVDMGA+VIVVNA+KVAVSGKKRTQ
Sbjct: 111 DKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQ 170
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGR 206
K+YRRHSGRPGG+KEETFDQLQ RIPERIIEHAVRGMLPKGR
Sbjct: 171 KLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGR 212
>sp|Q3MF94|RL13_ANAVT 50S ribosomal protein L13 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rplM PE=3 SV=1
Length = 151
Score = 165 bits (417), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/100 (76%), Positives = 88/100 (88%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNAEKVAV+GKKRTQ
Sbjct: 13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAEKVAVTGKKRTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
K+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK
Sbjct: 73 KLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPK 112
>sp|Q8YPK6|RL13_NOSS1 50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rplM PE=3 SV=1
Length = 151
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/100 (75%), Positives = 88/100 (88%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYVVDATDK LGRLAS IA+ +RGKN A YTP +D G +VIVVNA+KVAV+GKKRTQ
Sbjct: 13 ERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVVNAKKVAVTGKKRTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
K+YRRHSGRPGGMK ETF +LQ R+PERI+EHAV+GMLPK
Sbjct: 73 KLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPK 112
>sp|Q6H001|RL13_FREDI 50S ribosomal protein L13 OS=Fremyella diplosiphon GN=rplM PE=3
SV=2
Length = 151
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/100 (72%), Positives = 87/100 (87%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WY+VDATD+ LGRLAS IA+ +RGK A YTP +D G +VIV+NAEK+AV+GKKRTQ
Sbjct: 13 EREWYIVDATDQRLGRLASEIAMVLRGKKKAEYTPHLDTGDFVIVINAEKIAVTGKKRTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
K+YRRHSGRPGGMK ETF +LQ RIPERI+EHAV+GMLPK
Sbjct: 73 KLYRRHSGRPGGMKTETFAKLQQRIPERIVEHAVKGMLPK 112
>sp|Q8DMK8|RL13_THEEB 50S ribosomal protein L13 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rplM PE=3 SV=1
Length = 152
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/103 (73%), Positives = 87/103 (84%), Gaps = 3/103 (2%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
WYV+DA D+ LGRLA+ IA +RGKN A YTP +D G +VIV+NAEKV V+GKKR+QK+Y
Sbjct: 19 WYVIDAADQRLGRLAAEIARILRGKNKAIYTPHMDTGDFVIVINAEKVTVTGKKRSQKLY 78
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRK 207
RRHSGRPGGMK ETFDQLQ RIPERIIEHAV+GMLPK GRK
Sbjct: 79 RRHSGRPGGMKIETFDQLQARIPERIIEHAVKGMLPKNSLGRK 121
>sp|B8HMT1|RL13_CYAP4 50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rplM PE=3 SV=1
Length = 149
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/114 (67%), Positives = 90/114 (78%), Gaps = 3/114 (2%)
Query: 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
N T+ P + WYVVDAT++ LGRLA+ IA+ +RGK YTPS+D G +VIVV
Sbjct: 2 NKTYLPSTTS---LEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 58
Query: 151 NAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
NAEKVAV+GKKRTQKIYRRHSGRPGGMK ETF +LQ R+PERIIEHAV+GMLPK
Sbjct: 59 NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPK 112
>sp|B0JY35|RL13_MICAN 50S ribosomal protein L13 OS=Microcystis aeruginosa (strain
NIES-843) GN=rplM PE=3 SV=1
Length = 151
Score = 157 bits (396), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/106 (68%), Positives = 89/106 (83%), Gaps = 3/106 (2%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYV+DA D+ LGRLA+ IA+ +RGKN AT+TP +D G +VIV+NAEKV V+GKKR Q
Sbjct: 13 EQKWYVIDAADQRLGRLATEIAMILRGKNKATFTPHLDTGDFVIVINAEKVTVTGKKRQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRK 207
K+YRR SGRPGGMK E+FD+LQ RIPERIIEHAV+GMLPK GRK
Sbjct: 73 KVYRRDSGRPGGMKVESFDKLQKRIPERIIEHAVKGMLPKNSLGRK 118
>sp|B7K221|RL13_CYAP8 50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 8801)
GN=rplM PE=3 SV=1
Length = 151
Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/106 (66%), Positives = 88/106 (83%), Gaps = 3/106 (2%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYV+DA D+ LGRLAS +A +RGKN T+TP +D G +VI+VNAEKV V+GKK +Q
Sbjct: 13 DQKWYVIDAADQRLGRLASEVAQILRGKNKPTFTPHMDTGDFVIIVNAEKVVVTGKKSSQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRK 207
K+YRRHSGRPGGMK ETF++LQ R+PERI+EHAV+GMLPK GRK
Sbjct: 73 KLYRRHSGRPGGMKVETFEKLQARLPERIVEHAVKGMLPKNSLGRK 118
>sp|B1XJI1|RL13_SYNP2 50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rplM PE=3 SV=1
Length = 151
Score = 153 bits (386), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 72/100 (72%), Positives = 83/100 (83%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYVVDA D+ LGRLAS +A +RGKN A YTP +D G +VIVVNAEKV V+G+K Q
Sbjct: 13 DQKWYVVDAADQRLGRLASEVAKVLRGKNKAEYTPHMDTGDFVIVVNAEKVVVTGRKPEQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
K+YRRHSGRPGGMK ETF+QLQ RIPERIIE AV+GMLPK
Sbjct: 73 KLYRRHSGRPGGMKVETFNQLQDRIPERIIEKAVKGMLPK 112
>sp|B1WQT8|RL13_CYAA5 50S ribosomal protein L13 OS=Cyanothece sp. (strain ATCC 51142)
GN=rplM PE=3 SV=1
Length = 151
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/100 (69%), Positives = 85/100 (85%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYV+DATD+ LGRLA +A +RGKN TYTP +D G +VI++NA+KVAV+G+K TQ
Sbjct: 13 DQKWYVIDATDQRLGRLACEVAKILRGKNKPTYTPHMDTGDFVIIINADKVAVTGRKSTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
K+YRRHSGRPGGMK ETF++LQ RIPERIIE AV+GMLPK
Sbjct: 73 KLYRRHSGRPGGMKIETFEKLQQRIPERIIEKAVKGMLPK 112
>sp|Q318L0|RL13_PROM9 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9312) GN=rplM PE=3 SV=1
Length = 143
Score = 150 bits (378), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 85/107 (79%), Gaps = 3/107 (2%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEK+ VSGKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKIEVSGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRKQ 208
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP GR+Q
Sbjct: 73 KLYRRHSGRPGGMKTEKFESLQERIPERIIEQAVKGMLPHNSLGRQQ 119
>sp|A2BTB2|RL13_PROMS 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain
AS9601) GN=rplM PE=3 SV=1
Length = 143
Score = 150 bits (378), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 85/107 (79%), Gaps = 3/107 (2%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRLA+ IA +RGKN TYTP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTYTPHLDTGDFVIVVNAEKVEVTGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRKQ 208
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP GR+Q
Sbjct: 73 KLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLPHNSLGRQQ 119
>sp|B7KI14|RL13_CYAP7 50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7424)
GN=rplM PE=3 SV=1
Length = 151
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/100 (68%), Positives = 82/100 (82%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
DK WYV+DA + LGRLAS IA+ +RGKN TYTP +D G +VIV+NAEKV V+GKK Q
Sbjct: 13 DKQWYVIDAAGQRLGRLASEIAMILRGKNKPTYTPHLDTGDFVIVINAEKVIVTGKKSQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
K+Y RHSGRPGGMK ETF++LQ R+PERI+E AV+GMLPK
Sbjct: 73 KVYHRHSGRPGGMKVETFEKLQARLPERIVEKAVKGMLPK 112
>sp|P73294|RL13_SYNY3 50S ribosomal protein L13 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rplM PE=3 SV=1
Length = 151
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/106 (64%), Positives = 86/106 (81%), Gaps = 3/106 (2%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D WYV+DA + LGRLA+ +A +RGKN T+TP +D G +VI++NAEK+ V+G+KR Q
Sbjct: 13 DHKWYVIDAEGQRLGRLATEVATILRGKNKPTFTPHMDTGDFVIIINAEKIEVTGRKREQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRK 207
K+YRRHSGRPGGMKEETF++LQ R+PERI+E AVRGMLPK GRK
Sbjct: 73 KLYRRHSGRPGGMKEETFEKLQVRLPERIVESAVRGMLPKNSLGRK 118
>sp|B0C427|RL13_ACAM1 50S ribosomal protein L13 OS=Acaryochloris marina (strain MBIC
11017) GN=rplM PE=3 SV=1
Length = 151
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 83/101 (82%)
Query: 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 163
+DK WYVVDA ++ LGRLA+ IA+ +RGKN TYTP ++ G +VIV+NAEKV V+G K
Sbjct: 12 ADKKWYVVDAENQRLGRLATQIAMILRGKNKPTYTPFMNTGDFVIVINAEKVTVTGNKGE 71
Query: 164 QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
QK+YRRHSGRPGGMK ETF+ LQ RIPERIIE AV+GMLPK
Sbjct: 72 QKLYRRHSGRPGGMKTETFNHLQERIPERIIEKAVKGMLPK 112
>sp|A3PF22|RL13_PROM0 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9301) GN=rplM PE=3 SV=1
Length = 143
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 85/107 (79%), Gaps = 3/107 (2%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIATVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRKQ 208
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP GR+Q
Sbjct: 73 KLYRRHSGRPGGMKIEKFESLQERIPERIIEQAVKGMLPHNSLGRQQ 119
>sp|A2BYR0|RL13_PROM5 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9515) GN=rplM PE=3 SV=1
Length = 143
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 85/107 (79%), Gaps = 3/107 (2%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLATEIASVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKTSQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRKQ 208
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP GR+Q
Sbjct: 73 KLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSLGRQQ 119
>sp|Q7UZW8|RL13_PROMP 50S ribosomal protein L13 OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=rplM PE=3 SV=1
Length = 143
Score = 147 bits (372), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 69/107 (64%), Positives = 85/107 (79%), Gaps = 3/107 (2%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA DK LGRL++ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKDKTLGRLSTEIAAVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRKQ 208
K+YRRHSGRPGGMK E F+ LQ RIPERIIE AV+GMLP GR+Q
Sbjct: 73 KLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSLGRQQ 119
>sp|A8G736|RL13_PROM2 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9215) GN=rplM PE=3 SV=1
Length = 143
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/107 (63%), Positives = 85/107 (79%), Gaps = 3/107 (2%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA +K LGRLA+ IA +RGKN T+TP +D G +VIVVNAEKV V+GKK +Q
Sbjct: 13 ERNWFLVDAKNKTLGRLATEIATLLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRKQ 208
K+YRRHSGRPGGMK E F+ L+ RIPERIIE AV+GMLP GR+Q
Sbjct: 73 KLYRRHSGRPGGMKIEKFESLKERIPERIIEQAVKGMLPHNSLGRQQ 119
>sp|Q5N0T9|RL13_SYNP6 50S ribosomal protein L13 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rplM PE=3 SV=1
Length = 151
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 86/114 (75%), Gaps = 3/114 (2%)
Query: 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
N T+ P ++ WYVVDA D+ LGRLA+ IA +RGK+ TYTP +D G +VIV+
Sbjct: 2 NKTYLPSQGA---IERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVI 58
Query: 151 NAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
NA+KV V+G+K +QK+YRRHSGRPGGMK ETF LQ R+PERIIE AV+GMLPK
Sbjct: 59 NADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPK 112
>sp|Q31L33|RL13_SYNE7 50S ribosomal protein L13 OS=Synechococcus elongatus (strain PCC
7942) GN=rplM PE=3 SV=1
Length = 151
Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 86/114 (75%), Gaps = 3/114 (2%)
Query: 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150
N T+ P ++ WYVVDA D+ LGRLA+ IA +RGK+ TYTP +D G +VIV+
Sbjct: 2 NKTYLPSQGA---IERNWYVVDAADQRLGRLATEIARVLRGKHKPTYTPHMDTGDFVIVI 58
Query: 151 NAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
NA+KV V+G+K +QK+YRRHSGRPGGMK ETF LQ R+PERIIE AV+GMLPK
Sbjct: 59 NADKVTVTGRKASQKLYRRHSGRPGGMKVETFAHLQQRLPERIIEQAVKGMLPK 112
>sp|Q2JL71|RL13_SYNJB 50S ribosomal protein L13 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rplM PE=3 SV=1
Length = 151
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 84/104 (80%), Gaps = 3/104 (2%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
WY+VDA ++ LGRLA+ +A +RGK+ +TP +D G YVIV+NAEKV V+GKKRTQK+Y
Sbjct: 16 WYLVDAANQRLGRLAAAVATLLRGKHKPDFTPHLDTGDYVIVINAEKVVVTGKKRTQKLY 75
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRKQ 208
RRHSGRPGGMK ETF QLQ R+PER++E AV+GMLP GR+Q
Sbjct: 76 RRHSGRPGGMKVETFAQLQARLPERVVEKAVKGMLPHTRLGRRQ 119
>sp|Q110D4|RL13_TRIEI 50S ribosomal protein L13 OS=Trichodesmium erythraeum (strain
IMS101) GN=rplM PE=3 SV=1
Length = 151
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/105 (67%), Positives = 83/105 (79%), Gaps = 3/105 (2%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
K WYV+DA + LGRLA+ IA+ IRGKN TYTP +D G +VIVVNAEKV V+GKK +QK
Sbjct: 14 KKWYVIDAEGQRLGRLATAIAMIIRGKNKPTYTPHMDTGDFVIVVNAEKVTVTGKKSSQK 73
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRK 207
+YRRHSGRPGGMK E F +LQ R+P+RIIE AV GMLPK GRK
Sbjct: 74 LYRRHSGRPGGMKTEVFSKLQARLPQRIIEEAVFGMLPKNSLGRK 118
>sp|Q3AW67|RL13_SYNS9 50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9902)
GN=rplM PE=3 SV=2
Length = 150
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 64/99 (64%), Positives = 80/99 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYVVDA ++ LGRLA+ +A +RGKN +TP +D G +V+VVNAEK+ VSGKK Q
Sbjct: 13 DRQWYVVDAENQTLGRLATEVASILRGKNNPNFTPHLDTGDFVVVVNAEKIQVSGKKPQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFESLQERIPERIVEKAIKGMLP 111
>sp|Q0ID31|RL13_SYNS3 50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9311)
GN=rplM PE=3 SV=1
Length = 150
Score = 144 bits (364), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 82/99 (82%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WY+VDA ++ LGRLA+ +A +RGKN A++TP +D G +VIVVNA+K+ VSGKK Q
Sbjct: 13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVIVVNADKIRVSGKKPQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF+ LQ R+PERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFEHLQERLPERIVEKAIKGMLP 111
>sp|Q7U4H5|RL13_SYNPX 50S ribosomal protein L13 OS=Synechococcus sp. (strain WH8102)
GN=rplM PE=3 SV=1
Length = 150
Score = 144 bits (362), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 81/99 (81%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WY+VDA +K LGRLA+ +A +RGKN ++TP +D G +V+VVNAEK+ VSG K TQ
Sbjct: 13 ERQWYLVDAENKTLGRLATEVAAVLRGKNNPSFTPHLDTGDFVVVVNAEKIRVSGSKPTQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKTETFEALQDRIPERIVEKAIKGMLP 111
>sp|Q2JUJ8|RL13_SYNJA 50S ribosomal protein L13 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rplM PE=3 SV=1
Length = 151
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 83/104 (79%), Gaps = 3/104 (2%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
WY+VDA ++ LGRLA +A +RGK+ +TP +D G YVIV+NAEKV V+GKKRTQK+Y
Sbjct: 16 WYLVDAANQRLGRLAVVVAKLLRGKHKPNFTPHLDTGDYVIVINAEKVVVTGKKRTQKLY 75
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRKQ 208
RRHSGRPGGMK ETF QLQ R+PER+IE AV+GMLP GR+Q
Sbjct: 76 RRHSGRPGGMKVETFAQLQARLPERVIEKAVKGMLPHTRLGRRQ 119
>sp|Q3AMQ6|RL13_SYNSC 50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9605)
GN=rplM PE=3 SV=1
Length = 150
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/99 (62%), Positives = 80/99 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYVVDA ++ LGRLA+ +A +RGK ++TP +D G +V+VVNAEK+ VSG+K Q
Sbjct: 13 DRQWYVVDAENQTLGRLATEVAAVLRGKTNPSFTPHLDTGDFVVVVNAEKIKVSGRKPQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFEALQERIPERIVEKAIKGMLP 111
>sp|Q7V9Y8|RL13_PROMA 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rplM PE=3 SV=1
Length = 150
Score = 141 bits (355), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 81/99 (81%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WY+VDA ++ LGRLA+ +A +RGKN ++TP +D G +VI+VNAEK+ V+GKK Q
Sbjct: 13 NRQWYLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVIIVNAEKIKVTGKKGMQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF+ LQ RIPERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFNSLQERIPERIVEKAIKGMLP 111
>sp|A5GIR9|RL13_SYNPW 50S ribosomal protein L13 OS=Synechococcus sp. (strain WH7803)
GN=rplM PE=3 SV=1
Length = 150
Score = 140 bits (353), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 80/99 (80%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WY+VDA ++ LGRLA+ +A +RGKN A++TP +D G +V+VVNA+K+ VSG K Q
Sbjct: 13 DRQWYLVDAENQTLGRLATEVASVLRGKNKASFTPHLDTGDFVVVVNADKIRVSGNKPQQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFTHLQERLPERIVEKAIKGMLP 111
>sp|Q46IT5|RL13_PROMT 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain
NATL2A) GN=rplM PE=3 SV=1
Length = 150
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 79/102 (77%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ W++VDA ++ LGRLA+ +A +RGK +TP +D G +VIVVNAEK+ V+GKK Q
Sbjct: 13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGR 206
K+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP R
Sbjct: 73 KLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTR 114
>sp|A2C4X4|RL13_PROM1 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain
NATL1A) GN=rplM PE=3 SV=1
Length = 150
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 79/102 (77%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ W++VDA ++ LGRLA+ +A +RGK +TP +D G +VIVVNAEK+ V+GKK Q
Sbjct: 13 DRQWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGR 206
K+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP R
Sbjct: 73 KLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTR 114
>sp|A5GVY6|RL13_SYNR3 50S ribosomal protein L13 OS=Synechococcus sp. (strain RCC307)
GN=rplM PE=3 SV=1
Length = 150
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 79/99 (79%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ WYVVDA ++ LGRLA+ +A +RGKN TYTP +D G +V+V+NA+KV V+G K +
Sbjct: 13 ERHWYVVDAENQCLGRLATEVASVLRGKNKPTYTPHLDTGDFVVVINADKVKVTGNKASD 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF LQ RIPERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFAALQQRIPERIVEKAIKGMLP 111
>sp|P51292|RK13_PORPU 50S ribosomal protein L13, chloroplastic OS=Porphyra purpurea
GN=rpl13 PE=3 SV=1
Length = 142
Score = 136 bits (343), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 84/102 (82%)
Query: 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRT 163
+ ++WYV+DA ++ LGR+++ I+ +RGKN +YTP +D G YVIV+N+ +V+VSG K T
Sbjct: 11 TSQSWYVIDAKNQKLGRMSTHISNILRGKNKPSYTPYLDTGDYVIVINSSEVSVSGNKTT 70
Query: 164 QKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
QK+YRRHSG+PGG+K ETF+QLQ R+P RI+E +V+GMLPKG
Sbjct: 71 QKLYRRHSGQPGGLKVETFEQLQTRLPNRIVEKSVKGMLPKG 112
>sp|Q7V521|RL13_PROMM 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9313) GN=rplM PE=3 SV=1
Length = 150
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 79/99 (79%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA ++ LGRLA+ +A +RGKN ++TP +D G +V+VVNA+K+ VSG K Q
Sbjct: 13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLP 111
>sp|A2CC54|RL13_PROM3 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT
9303) GN=rplM PE=3 SV=1
Length = 150
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 79/99 (79%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
++ W++VDA ++ LGRLA+ +A +RGKN ++TP +D G +V+VVNA+K+ VSG K Q
Sbjct: 13 ERQWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQ 72
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLP 203
K+YRRHSGRPGGMK ETF LQ R+PERI+E A++GMLP
Sbjct: 73 KLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLP 111
>sp|Q1XDJ6|RK13_PORYE 50S ribosomal protein L13, chloroplastic OS=Porphyra yezoensis
GN=rpl13 PE=3 SV=1
Length = 142
Score = 135 bits (341), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 79/98 (80%)
Query: 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIY 167
WYV+DA ++ LGR+++ I+ +RGKN +YTP +D G YVIV+N+ V+VSG K QK+Y
Sbjct: 15 WYVIDAKNQTLGRISTHISNILRGKNKPSYTPYLDTGDYVIVINSAHVSVSGNKTNQKLY 74
Query: 168 RRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
RRHSG+PGG+K ETFDQLQ R+P RIIE +V+GMLPKG
Sbjct: 75 RRHSGQPGGLKVETFDQLQTRLPNRIIEKSVKGMLPKG 112
>sp|A1JR94|RL13_YERE8 50S ribosomal protein L13 OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=rplM PE=3 SV=1
Length = 142
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 78/100 (78%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDA K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT K
Sbjct: 13 RDWYVVDANGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
IY RH+G GG+K+ TF+++ R PER+IE AV+GMLPKG
Sbjct: 73 IYYRHTGHIGGIKQATFEEMIARSPERVIEIAVKGMLPKG 112
>sp|B4RXK9|RL13_ALTMD 50S ribosomal protein L13 OS=Alteromonas macleodii (strain DSM
17117 / Deep ecotype) GN=rplM PE=3 SV=1
Length = 142
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 76/100 (76%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDATDK LGRLAS IA+ +RGK+ YTP VD G Y+IV+NAEKVAV+G+K K
Sbjct: 13 RDWYVVDATDKTLGRLASEIALRLRGKHKPEYTPHVDTGDYIIVINAEKVAVTGRKAQDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
+Y HSG PGG+KE F++L PE ++E AV+GMLPKG
Sbjct: 73 MYYAHSGYPGGLKETNFEKLIAHKPEMVLEKAVKGMLPKG 112
>sp|B4EXL9|RL13_PROMH 50S ribosomal protein L13 OS=Proteus mirabilis (strain HI4320)
GN=rplM PE=3 SV=1
Length = 142
Score = 131 bits (330), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 78/100 (78%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDA K LGRLA+ IA +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT K
Sbjct: 13 RDWYVVDADGKTLGRLATEIARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGHKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
+Y RH+G GG+K+ TF+++ R PER+IE AV+GMLPKG
Sbjct: 73 VYYRHTGHVGGIKQATFEEMIARSPERVIEIAVKGMLPKG 112
>sp|A8AQC1|RL13_CITK8 50S ribosomal protein L13 OS=Citrobacter koseri (strain ATCC
BAA-895 / CDC 4225-83 / SGSC4696) GN=rplM PE=3 SV=1
Length = 142
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 79/100 (79%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDAT K LGRLA+ +A+ +RGK+ A YTP VD G Y+IV+NA+KVAV+G KRT K
Sbjct: 13 RDWYVVDATGKTLGRLATELALRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
+Y H+G GG+K+ TF+++ R PER+IE AV+GMLPKG
Sbjct: 73 VYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKG 112
>sp|A8GK03|RL13_SERP5 50S ribosomal protein L13 OS=Serratia proteamaculans (strain 568)
GN=rplM PE=3 SV=1
Length = 142
Score = 130 bits (327), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 78/100 (78%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDA K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KRT K
Sbjct: 13 RDWYVVDADGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRTDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
+Y RH+G GG+K+ TF+++ R PER+IE AV+GMLPKG
Sbjct: 73 VYYRHTGYVGGIKQATFEEMIARNPERVIEIAVKGMLPKG 112
>sp|C1DDC6|RL13_LARHH 50S ribosomal protein L13 OS=Laribacter hongkongensis (strain
HLHK9) GN=rplM PE=3 SV=1
Length = 142
Score = 130 bits (326), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 76/100 (76%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ W+VVDATDK+LGRLA+ IA +RGK+ YTP VD G Y++VVNA+K+ V+G K K
Sbjct: 13 RDWFVVDATDKVLGRLAAEIARRLRGKHKPEYTPHVDTGDYIVVVNADKLRVTGNKALDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
Y RHSG PGG+ E TF +LQ+ PER++E AV+GMLPKG
Sbjct: 73 KYYRHSGYPGGIYERTFTELQNEFPERVLEKAVKGMLPKG 112
>sp|A7MJB9|RL13_CROS8 50S ribosomal protein L13 OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=rplM PE=3 SV=1
Length = 142
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 78/100 (78%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR+ K
Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRSDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
+Y H+G GG+KE TF+++ R PER+IE AV+GMLPKG
Sbjct: 73 MYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLPKG 112
>sp|B2VGX3|RL13_ERWT9 50S ribosomal protein L13 OS=Erwinia tasmaniensis (strain DSM 17950
/ Et1/99) GN=rplM PE=3 SV=1
Length = 142
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 78/100 (78%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR+ K
Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKRSDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
IY H+G GG+K+ TF+++ R PER+IE AV+GMLPKG
Sbjct: 73 IYYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKG 112
>sp|C4ZI85|RL13_EUBR3 50S ribosomal protein L13 OS=Eubacterium rectale (strain ATCC 33656
/ VPI 0990) GN=rplM PE=3 SV=1
Length = 142
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/101 (61%), Positives = 76/101 (75%)
Query: 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164
D+ WYVVDA K LGRLAS +A +RGKN A +TP +D G YVIVVNA+KV V+GKK Q
Sbjct: 12 DRKWYVVDAEGKTLGRLASEVAKVLRGKNKAIFTPHIDTGDYVIVVNADKVKVTGKKLDQ 71
Query: 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
KIY HS GGMKE T ++ ++ PER+IE+AV+GMLPKG
Sbjct: 72 KIYYHHSDYIGGMKETTLREMMNKHPERVIEYAVKGMLPKG 112
>sp|C5C020|RL13_BEUC1 50S ribosomal protein L13 OS=Beutenbergia cavernae (strain ATCC
BAA-8 / DSM 12333 / NBRC 16432) GN=rplM PE=3 SV=1
Length = 147
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 87/119 (73%), Gaps = 6/119 (5%)
Query: 93 TWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 152
T+ PK +D +++TWYV+DATD +LGRLAS +A +RGK+ AT+ P VD G +VIVVNA
Sbjct: 3 TFTPKPSD---TERTWYVIDATDVVLGRLASQVAKLLRGKHKATFAPHVDTGDFVIVVNA 59
Query: 153 EKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK---GRKQ 208
+KVA++G K QK+ RHSG PGG+K ++ +L + PER +E A+RGM+PK GR Q
Sbjct: 60 DKVALTGNKEQQKLAYRHSGYPGGLKATSYAELLEKRPERAVEKAIRGMVPKNSLGRAQ 118
>sp|Q2S9X2|RL13_HAHCH 50S ribosomal protein L13 OS=Hahella chejuensis (strain KCTC 2396)
GN=rplM PE=3 SV=1
Length = 142
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 76/99 (76%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYV+DATDK LGRL++ IA +RGK+ A YTP VD G Y++VVNAEKV V+G K K
Sbjct: 13 RDWYVIDATDKTLGRLSTEIARRLRGKHKAEYTPHVDTGDYIVVVNAEKVRVTGNKAQDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPK 204
+Y RH+G PGG+KE +FD+L PER+IE AV+GM+P+
Sbjct: 73 MYYRHTGYPGGLKEMSFDKLIQHAPERVIETAVKGMMPR 111
>sp|A6TEN9|RL13_KLEP7 50S ribosomal protein L13 OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplM PE=3
SV=1
Length = 142
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 77/100 (77%)
Query: 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQK 165
+ WYVVDAT K LGRLA+ +A +RGK+ A YTP VD G Y+IV+NAEKVAV+G KR K
Sbjct: 13 RDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNAEKVAVTGNKREDK 72
Query: 166 IYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKG 205
+Y H+G GG+KE TF+++ R PER+IE AV+GMLPKG
Sbjct: 73 MYYHHTGHIGGIKEATFEEMIARRPERVIEIAVKGMLPKG 112
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.128 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,874,445
Number of Sequences: 539616
Number of extensions: 3034871
Number of successful extensions: 12882
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 11562
Number of HSP's gapped (non-prelim): 1154
length of query: 208
length of database: 191,569,459
effective HSP length: 112
effective length of query: 96
effective length of database: 131,132,467
effective search space: 12588716832
effective search space used: 12588716832
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)