Query 028533
Match_columns 208
No_of_seqs 140 out of 1046
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 21:43:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_L Ribosomal protein L13; 100.0 1.6E-74 5.3E-79 505.0 4.5 199 1-208 1-214 (250)
2 2ftc_H L13MT, MRP-L13, 39S rib 100.0 2.6E-53 9E-58 347.7 9.9 118 91-208 1-118 (148)
3 3r8s_J 50S ribosomal protein L 100.0 1.5E-53 5E-58 347.3 6.9 114 91-207 1-114 (142)
4 3v2d_N 50S ribosomal protein L 100.0 3.6E-53 1.2E-57 344.3 6.8 112 91-207 1-112 (140)
5 2zjr_G 50S ribosomal protein L 100.0 3E-52 1E-56 349.2 8.9 118 85-207 23-140 (174)
6 3f1f_N 50S ribosomal protein L 100.0 3.6E-52 1.2E-56 345.7 4.3 112 91-207 24-135 (163)
7 1j3a_A 50S ribosomal protein L 100.0 6E-38 2E-42 255.0 2.5 87 108-207 1-89 (142)
8 1vq8_J 50S ribosomal protein L 100.0 2.7E-37 9.1E-42 252.2 1.5 87 105-207 6-93 (145)
9 4b6a_O 60S ribosomal protein L 100.0 1.6E-35 5.5E-40 252.3 4.3 91 105-207 3-94 (199)
10 4a17_I RPL13A, 60S ribosomal p 100.0 7.8E-34 2.7E-38 241.7 3.2 91 105-207 2-93 (198)
11 3iz5_K 60S ribosomal protein L 100.0 8.1E-33 2.8E-37 236.7 0.2 90 104-207 7-99 (206)
12 2zkr_j 60S ribosomal protein L 100.0 5.9E-32 2E-36 230.9 2.2 83 104-207 2-94 (203)
13 3jyw_M 60S ribosomal protein L 100.0 1.4E-31 4.9E-36 224.6 -0.1 87 109-207 1-88 (178)
14 3koj_A Uncharacterized protein 49.2 9.1 0.00031 28.9 2.3 29 106-150 52-80 (108)
15 2wsc_2 LHCA2, type II chloroph 42.3 5.3 0.00018 35.1 0.0 17 1-17 1-17 (269)
16 3stb_C RNA-editing complex pro 41.2 75 0.0026 25.6 6.7 32 105-151 84-115 (148)
17 4dam_A Single-stranded DNA-bin 34.0 22 0.00074 27.4 2.3 30 106-151 62-91 (128)
18 3vdy_A SSB, single-stranded DN 31.8 26 0.00088 25.9 2.3 29 106-150 49-77 (116)
19 3ulp_A Single-strand binding p 28.9 28 0.00097 26.1 2.2 29 106-150 53-82 (124)
20 3bbo_4 Ribosomal protein L34; 28.5 12 0.00041 30.5 0.0 9 59-67 86-94 (152)
21 2vw9_A Single-stranded DNA bin 28.3 31 0.0011 26.4 2.3 20 107-130 49-68 (134)
22 1z9f_A Single-strand binding p 27.0 36 0.0012 26.9 2.6 28 107-150 63-90 (153)
23 3afp_A Single-stranded DNA-bin 26.9 36 0.0012 27.2 2.6 29 106-150 52-80 (168)
24 1hzt_A Isopentenyl diphosphate 26.3 12 0.00039 29.0 -0.5 44 106-157 4-48 (190)
25 2fkb_A Putative nudix hydrolas 25.9 33 0.0011 25.8 2.1 44 105-157 9-53 (180)
26 1eqq_A Single stranded DNA bin 25.6 36 0.0012 27.6 2.3 21 106-130 53-73 (178)
27 1qvc_A Single stranded DNA bin 24.8 42 0.0014 26.0 2.5 29 106-150 52-80 (145)
28 3lor_A Thiol-disulfide isomera 24.1 60 0.002 23.2 3.1 26 105-130 121-155 (160)
29 2v1m_A Glutathione peroxidase; 24.0 46 0.0016 24.0 2.5 26 106-131 134-168 (169)
30 3tqy_A Single-stranded DNA-bin 23.9 40 0.0014 26.6 2.3 29 106-150 55-83 (158)
31 2g1u_A Hypothetical protein TM 22.4 1.2E+02 0.0039 22.4 4.5 32 105-152 19-50 (155)
32 3kb2_A SPBC2 prophage-derived 22.3 59 0.002 23.5 2.8 25 106-130 141-165 (173)
33 3k7u_C MP18 RNA editing comple 20.8 49 0.0017 26.2 2.2 30 105-150 50-80 (148)
34 2f1e_A Protein APAG; APAG prot 20.6 36 0.0012 26.5 1.4 48 57-117 6-61 (127)
35 3eiv_A Single-stranded DNA-bin 20.5 55 0.0019 27.3 2.5 29 106-150 52-80 (199)
No 1
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.6e-74 Score=504.96 Aligned_cols=199 Identities=65% Similarity=1.040 Sum_probs=101.6
Q ss_pred CccccCCceeeecCCCCCCCCCCccccccccccccCCCCccccccccc--CCCCCcccccceEEEeccc-----------
Q 028533 1 MATLCTPTCVIFSSLQSSSSSSSFKTLNTGTTISSSTTPFLGFSVASA--KSTSPLNTKRSFKVRCCQN----------- 67 (208)
Q Consensus 1 ma~l~~~~~~~~~s~~~~~~~~sf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~c~~~----------- 67 (208)
||+++|+|||||||+| ++.++|++++ ..+||+|+.++.. .++.+++++.+++|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 71 (250)
T 3bbo_L 1 MATMACASSLTFPSAQ--TQKSFFGTNV-------KQTPVLSFPRPTVAAAVAVSARKSTSASTKCTEEWRQLKEAVKKE 71 (250)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceeeccceeccCCC--CCCccccccc-------ccCceeecccccccccccccccCCCcceEEeeeccchhhhhhccc
Confidence 8999999999999987 4566777776 6689999987553 4456678899999999998
Q ss_pred --cccccCcchhhhhhhcccCCcccceeccCCCCCCCcccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCC
Q 028533 68 --LSLVPDNQRWMFEQSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGA 145 (208)
Q Consensus 68 --~~~v~~~~r~m~~~~e~~g~~~~~kT~~~k~~~~~~~~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD 145 (208)
+++|||||||||++.|+.|+||||+||++|++++++.+|+||||||+||+|||||+.||++|+|||||+|||++||||
T Consensus 72 ~~~~~v~~~~~~~~~~~~~~g~d~~~kT~~~k~~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD 151 (250)
T 3bbo_L 72 FAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGA 151 (250)
T ss_dssp ----------------------------------------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSC
T ss_pred cccccccccccccccchhhcCCCccceeecCChhhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCC
Confidence 378999999999999999999999999999999777799999999999999999999999999999999999999999
Q ss_pred EEEEEeceeeEEeCccccceeeeeccCCCCCCCCCchhhhhccChHHHHHHHHhCcCCCCCCC
Q 028533 146 YVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRKQ 208 (208)
Q Consensus 146 ~VVVINAekI~vTG~K~~~K~Y~~HtgyPGglk~~t~~~l~~r~P~~IlkrAVrGMLPkn~Lr 208 (208)
+|||||||+|+|||+||++|.|++|+|||||+|+++++++++|+|++||++|||||||||+|+
T Consensus 152 ~VVVINAeKI~lTG~K~~~K~Y~rHsgyPGGlK~~t~~~l~~r~PerIi~kAVrGMLPkn~lG 214 (250)
T 3bbo_L 152 FVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLG 214 (250)
T ss_dssp CCEESCCSSCCCCSGGGGTCCCBCCCSSSSCCCBCCHHHHTTSCTTHHHHHHHHTTSCSSSSH
T ss_pred EEEEEecceEEecCChhhceEEEEecCcCCCcccccHHHhhhcChHHHHHHHHHhcCCCCchH
Confidence 999999999999999999999999999999999999999999999999999999999999873
No 2
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=2.6e-53 Score=347.71 Aligned_cols=118 Identities=31% Similarity=0.566 Sum_probs=114.1
Q ss_pred ceeccCCCCCCCcccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEeceeeEEeCccccceeeeec
Q 028533 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (208)
Q Consensus 91 ~kT~~~k~~~~~~~~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINAekI~vTG~K~~~K~Y~~H 170 (208)
|.||++|.+++.+++|+||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|++||+||++|.||+|
T Consensus 1 m~t~~~k~~~~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~h 80 (148)
T 2ftc_H 1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSH 80 (148)
T ss_pred CcccccchhhhhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeeee
Confidence 46899999997777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCchhhhhccChHHHHHHHHhCcCCCCCCC
Q 028533 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRKQ 208 (208)
Q Consensus 171 tgyPGglk~~t~~~l~~r~P~~IlkrAVrGMLPkn~Lr 208 (208)
||||||+++++++++++|+|++||++|||||||||+|+
T Consensus 81 tg~pGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~lg 118 (148)
T 2ftc_H 81 TGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHR 118 (148)
T ss_pred eCCcCCceeccHHHHhhcCHHHHHHHHHHhcCCCCchH
Confidence 99999999999999999999999999999999999763
No 3
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=1.5e-53 Score=347.29 Aligned_cols=114 Identities=54% Similarity=0.913 Sum_probs=111.7
Q ss_pred ceeccCCCCCCCcccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEeceeeEEeCccccceeeeec
Q 028533 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (208)
Q Consensus 91 ~kT~~~k~~~~~~~~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINAekI~vTG~K~~~K~Y~~H 170 (208)
||||++|+++ ++|+||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|+|||+||++|.||+|
T Consensus 1 mkt~~~~~~~---~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~h 77 (142)
T 3r8s_J 1 MKTFTAKPET---VKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHH 77 (142)
T ss_dssp CCCCCCCTTT---CCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCEE
T ss_pred CCcccCChhh---ccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEEe
Confidence 6899999998 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCchhhhhccChHHHHHHHHhCcCCCCCC
Q 028533 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRK 207 (208)
Q Consensus 171 tgyPGglk~~t~~~l~~r~P~~IlkrAVrGMLPkn~L 207 (208)
||||||+++++++++++|+|++||++||+||||||+|
T Consensus 78 tgypGg~k~~~~~~~~~r~P~~ii~~aVrGMLPkn~l 114 (142)
T 3r8s_J 78 TGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPL 114 (142)
T ss_dssp CSSTTCEECCBHHHHHHHCSHHHHHHHHHHHSCSSHH
T ss_pred cCcCCCccccCHHHHHhhCHHHHHHHHHHhcCCCChh
Confidence 9999999999999999999999999999999999976
No 4
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=3.6e-53 Score=344.30 Aligned_cols=112 Identities=50% Similarity=0.867 Sum_probs=109.2
Q ss_pred ceeccCCCCCCCcccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEeceeeEEeCccccceeeeec
Q 028533 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (208)
Q Consensus 91 ~kT~~~k~~~~~~~~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINAekI~vTG~K~~~K~Y~~H 170 (208)
||||++| + ++|+||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|+|||+||++|.|++|
T Consensus 1 m~t~~~~--~---~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~h 75 (140)
T 3v2d_N 1 MKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRY 75 (140)
T ss_dssp CCCCCCC--C---CCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEEE
T ss_pred Ccccccc--c---ccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEEe
Confidence 6899999 5 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCchhhhhccChHHHHHHHHhCcCCCCCC
Q 028533 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRK 207 (208)
Q Consensus 171 tgyPGglk~~t~~~l~~r~P~~IlkrAVrGMLPkn~L 207 (208)
||||||+++++++++++|+|++||++||+||||||+|
T Consensus 76 tgypGglk~~~~~~~~~r~P~~ii~~aVrGMLPk~~l 112 (140)
T 3v2d_N 76 SGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPL 112 (140)
T ss_dssp CSSTTCEEEEEHHHHHHHCTHHHHHHHHHHTSCSSHH
T ss_pred cccCCcceeccHHHhhhhCHHHHHHHHHHhcCCCChh
Confidence 9999999999999999999999999999999999975
No 5
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=3e-52 Score=349.20 Aligned_cols=118 Identities=47% Similarity=0.743 Sum_probs=108.6
Q ss_pred cCCcccceeccCCCCCCCcccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEeceeeEEeCccccc
Q 028533 85 NGPDIWNNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQ 164 (208)
Q Consensus 85 ~g~~~~~kT~~~k~~~~~~~~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINAekI~vTG~K~~~ 164 (208)
++.+++|+||++|+ .+|+||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|++||+||++
T Consensus 23 ~~~~~~m~T~~~k~-----~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~ 97 (174)
T 2zjr_G 23 LLRSFKVKTYIPKN-----DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDD 97 (174)
T ss_dssp -------CCCCCCC-----SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSS
T ss_pred ccccceeeeeccCc-----ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhc
Confidence 35566889999998 3899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccCCCCCCCCCchhhhhccChHHHHHHHHhCcCCCCCC
Q 028533 165 KIYRRHSGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRK 207 (208)
Q Consensus 165 K~Y~~HtgyPGglk~~t~~~l~~r~P~~IlkrAVrGMLPkn~L 207 (208)
|.||+|||||||+++++++++++|+|++||++||+||||||+|
T Consensus 98 K~yy~htgypGGlk~~~~~~~~~r~P~~Ii~~AVrGMLPkn~l 140 (174)
T 2zjr_G 98 KVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQ 140 (174)
T ss_dssp CEEEECCSSCSSCCEEEESTTTTSCHHHHHHHHHGGGSCCSHH
T ss_pred eEEEEecCcCCCcccccHHHHhhcChHHHHHHHHHhcCCCChh
Confidence 9999999999999999999999999999999999999999975
No 6
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=3.6e-52 Score=345.74 Aligned_cols=112 Identities=50% Similarity=0.867 Sum_probs=108.7
Q ss_pred ceeccCCCCCCCcccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEeceeeEEeCccccceeeeec
Q 028533 91 NNTWYPKAADHRHSDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRH 170 (208)
Q Consensus 91 ~kT~~~k~~~~~~~~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINAekI~vTG~K~~~K~Y~~H 170 (208)
|+||++| + ++|+||||||+||+||||||.||++|+|||||+|||++||||+|||||||+|++||+||++|.||+|
T Consensus 24 mkt~~~k--~---~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~h 98 (163)
T 3f1f_N 24 VKTYVPK--Q---VEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRY 98 (163)
T ss_dssp -CCCCCC--C---CCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCB
T ss_pred Ccccccc--c---ccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEEe
Confidence 6899999 5 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCchhhhhccChHHHHHHHHhCcCCCCCC
Q 028533 171 SGRPGGMKEETFDQLQHRIPERIIEHAVRGMLPKGRK 207 (208)
Q Consensus 171 tgyPGglk~~t~~~l~~r~P~~IlkrAVrGMLPkn~L 207 (208)
||||||+++++++++++|+|++||++||+||||||+|
T Consensus 99 tgypGglk~~t~~~~~~r~P~~Ii~~AVrGMLPkn~l 135 (163)
T 3f1f_N 99 SGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPL 135 (163)
T ss_dssp CSSTTCBCCEEHHHHHHSSCHHHHHHHHHTTSCSSHH
T ss_pred cCcCCcceeeehHHhhhcCHHHHHHHHHHhcCCCChh
Confidence 9999999999999999999999999999999999975
No 7
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=6e-38 Score=254.95 Aligned_cols=87 Identities=28% Similarity=0.447 Sum_probs=73.3
Q ss_pred EEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEeceeeEEeCccccceeeeeccCCCCCCCC-Cchhhhh
Q 028533 108 WYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKE-ETFDQLQ 186 (208)
Q Consensus 108 W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGglk~-~t~~~l~ 186 (208)
|+||||+||+||||||.||++|+ |||+|||||||+|+|||+|+++|.||+|++||||++. ++ ++++
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~-~~~~ 67 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRR-GPFY 67 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC--------------C
T ss_pred CEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCcc-Cccc
Confidence 99999999999999999999999 9999999999999999999999999999999999776 67 9999
Q ss_pred ccChHHHHHHHHhCcCC-CCCC
Q 028533 187 HRIPERIIEHAVRGMLP-KGRK 207 (208)
Q Consensus 187 ~r~P~~IlkrAVrGMLP-kn~L 207 (208)
+|+|++||++||+|||| ||+|
T Consensus 68 ~r~P~~ii~~aVrGMLP~k~~l 89 (142)
T 1j3a_A 68 PKRSDEIVRRTIRGMLPWKTDR 89 (142)
T ss_dssp CCSHHHHHHHHHHTTTTTTSHH
T ss_pred ccCHHHHHHHHHHhhccCCCHH
Confidence 99999999999999999 7754
No 8
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=2.7e-37 Score=252.21 Aligned_cols=87 Identities=31% Similarity=0.422 Sum_probs=83.9
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEeceeeEEeCccccceeeeeccCCCCCCCCCchhh
Q 028533 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ 184 (208)
Q Consensus 105 ~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGglk~~t~~~ 184 (208)
.++||||||+||+||||||+||++|+ |||+|||||||+|++||+|+++|.||+|++|||+ ++++
T Consensus 6 ~~~w~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~htg~~g~----~~~~ 69 (145)
T 1vq8_J 6 FDADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGN----DNGY 69 (145)
T ss_dssp CCCSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCC----SSCC
T ss_pred cccEEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCEeeEecchhhhheeeeEEeCCCCC----CHHH
Confidence 57899999999999999999999999 9999999999999999999999999999999998 7899
Q ss_pred hhccChHHHHHHHHhCcCC-CCCC
Q 028533 185 LQHRIPERIIEHAVRGMLP-KGRK 207 (208)
Q Consensus 185 l~~r~P~~IlkrAVrGMLP-kn~L 207 (208)
+++|+|++||++||+|||| ||+|
T Consensus 70 ~~~r~P~~i~~~aVrGMLP~K~~l 93 (145)
T 1vq8_J 70 FYPKRPDGIFKRTIRGMLPHKKQR 93 (145)
T ss_dssp CCCCSHHHHHHHHHHTTTTTTSHH
T ss_pred HhhcChHHHHHHHHHhhcCCCCHH
Confidence 9999999999999999999 8865
No 9
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=1.6e-35 Score=252.29 Aligned_cols=91 Identities=35% Similarity=0.485 Sum_probs=87.4
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEeceeeEEeCccccceeeeeccCCCCCCCCCchhh
Q 028533 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ 184 (208)
Q Consensus 105 ~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGglk~~t~~~ 184 (208)
.++|+||||+|++||||||.||+.|+ .||+|||||||+|.|||+|+++|.||+|+|||||++..++++
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~------------~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~ 70 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGP 70 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHH------------TTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhc------------CCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHH
Confidence 46899999999999999999999998 699999999999999999999999999999999999999999
Q ss_pred hhccChHHHHHHHHhCcCC-CCCC
Q 028533 185 LQHRIPERIIEHAVRGMLP-KGRK 207 (208)
Q Consensus 185 l~~r~P~~IlkrAVrGMLP-kn~L 207 (208)
+++|+|++||++||||||| ||+|
T Consensus 71 ~~~r~P~~il~~aVrGMLP~K~~l 94 (199)
T 4b6a_O 71 FHFRAPSRILYKAIRGMVSHKTAR 94 (199)
T ss_dssp CCCCSHHHHHHHHHHTTSCTTSHH
T ss_pred HhhcCcHHHHHHHHhccCCCCChh
Confidence 9999999999999999999 5654
No 10
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=99.98 E-value=7.8e-34 Score=241.73 Aligned_cols=91 Identities=31% Similarity=0.367 Sum_probs=86.6
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEeceeeEEeCccccceeeeeccCCCCCCCCCchhh
Q 028533 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQ 184 (208)
Q Consensus 105 ~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGglk~~t~~~ 184 (208)
.++||||||+||+||||||.||++|+ |||+|||||||+|+|||+||++|.||+|+.++++.++.++++
T Consensus 2 ~~~w~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~ 69 (198)
T 4a17_I 2 FDKLVVIDAKGHLLGRLASYVAKELL------------SGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGV 69 (198)
T ss_dssp CSSCEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSC
T ss_pred CccEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCccccccCchhhheeeeeeccccccCCCCcccc
Confidence 46899999999999999999999999 999999999999999999999999999999999998888899
Q ss_pred hhccChHHHHHHHHhCcCCC-CCC
Q 028533 185 LQHRIPERIIEHAVRGMLPK-GRK 207 (208)
Q Consensus 185 l~~r~P~~IlkrAVrGMLPk-n~L 207 (208)
+++++|++||++||+||||+ |+|
T Consensus 70 ~~~r~P~rIi~~AVrGMLPkK~~l 93 (198)
T 4a17_I 70 QHFRAPSRIFWRAVRGMLPHKTPK 93 (198)
T ss_dssp CCCCSHHHHHHHHHHTTTTTTSHH
T ss_pred ccccCHHHHHHHHHhccCCCCChh
Confidence 99999999999999999996 654
No 11
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=99.97 E-value=8.1e-33 Score=236.71 Aligned_cols=90 Identities=30% Similarity=0.425 Sum_probs=80.8
Q ss_pred ccceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEeceeeEEeCccccceeeeeccCCCCCCCCC--c
Q 028533 104 SDKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEE--T 181 (208)
Q Consensus 104 ~~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGglk~~--t 181 (208)
++|+||||||+||+||||||.||++|+ |||+|||||||+|+|||+||++|.||+| |.+..... +
T Consensus 7 f~r~W~VIDA~g~~LGRLAS~VAk~Ll------------~Gd~VVVINAekI~iTG~K~~~K~yy~~--~l~~~~~~np~ 72 (206)
T 3iz5_K 7 VCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYLR--FLRKRMNTKPS 72 (206)
T ss_dssp CCSSCCEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHH--HHHHTTCSCSS
T ss_pred cceeEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCcccCcCCchHhhhhheee--ecceeecCCCc
Confidence 689999999999999999999999999 9999999999999999999999999987 44433322 4
Q ss_pred hhhhhccChHHHHHHHHhCcCCC-CCC
Q 028533 182 FDQLQHRIPERIIEHAVRGMLPK-GRK 207 (208)
Q Consensus 182 ~~~l~~r~P~~IlkrAVrGMLPk-n~L 207 (208)
++++++|+|++||++||+||||| |+|
T Consensus 73 ~~~~~~r~P~~Il~~AVrGMLPkk~~l 99 (206)
T 3iz5_K 73 HGPIHFRAPAKILWRTIRGMIPHKTAR 99 (206)
T ss_dssp SCSCCCCSHHHHHHHHHHHHSCTTSHH
T ss_pred ccchhhcCHHHHHHHHHhccCCCCChh
Confidence 68999999999999999999998 554
No 12
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.97 E-value=5.9e-32 Score=230.92 Aligned_cols=83 Identities=33% Similarity=0.506 Sum_probs=72.6
Q ss_pred ccceEEEEeCCCCCchhhHHHHHH-HHhcCCCCccCCCCCCCCEEEEEeceeeEEeCccccceeee-ecc-------CCC
Q 028533 104 SDKTWYVVDATDKILGRLASTIAI-HIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYR-RHS-------GRP 174 (208)
Q Consensus 104 ~~r~W~VIDA~gqiLGRLAS~IAk-~L~GKhKp~ytP~~D~GD~VVVINAekI~vTG~K~~~K~Y~-~Ht-------gyP 174 (208)
.+++||||||+||+||||||.||+ +|+ ||+|||||||+|+|||+||++|.|| +|+ +||
T Consensus 2 ~~r~w~VIDA~g~~LGRLAS~VAk~lL~-------------G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~ 68 (203)
T 2zkr_j 2 AEVQVLVLDGRGHLLGRLAAIVAKQVLL-------------GRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSR 68 (203)
T ss_dssp -----CEEECTTBBHHHHHHHHHHHHHH-------------TCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSS
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhC-------------CCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCC
Confidence 468999999999999999999999 776 7899999999999999999999999 998 677
Q ss_pred CCCCCCchhhhhccChHHHHHHHHhCcCCC-CCC
Q 028533 175 GGMKEETFDQLQHRIPERIIEHAVRGMLPK-GRK 207 (208)
Q Consensus 175 Gglk~~t~~~l~~r~P~~IlkrAVrGMLPk-n~L 207 (208)
|+ +++|+|++||++||+||||+ |+|
T Consensus 69 G~--------~~~r~P~~I~~~AVrGMLPkk~~l 94 (203)
T 2zkr_j 69 GP--------YDFRAPSRIFWRTVRGMLPHKTKR 94 (203)
T ss_dssp CC--------CCCCSHHHHHHHHHHHHSCTTSHH
T ss_pred Cc--------cccCChHHHHHHHHHhhCCCCChh
Confidence 75 78999999999999999999 554
No 13
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.96 E-value=1.4e-31 Score=224.57 Aligned_cols=87 Identities=30% Similarity=0.442 Sum_probs=77.9
Q ss_pred EEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEeceeeEEeCccccceeeeeccCCCCCCCCCchhhhhcc
Q 028533 109 YVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAEKVAVSGKKRTQKIYRRHSGRPGGMKEETFDQLQHR 188 (208)
Q Consensus 109 ~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINAekI~vTG~K~~~K~Y~~HtgyPGglk~~t~~~l~~r 188 (208)
+||||+||+||||||+||++|+ |||+|||||||+|.|||+||++|+||+|..+.+.....+.+++++|
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r 68 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFR 68 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHT------------TTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCS
T ss_pred CEEcCCCCchHHHHHHHHHHHh------------CCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccC
Confidence 5899999999999999999999 9999999999999999999999999999544444444567999999
Q ss_pred ChHHHHHHHHhCcCCC-CCC
Q 028533 189 IPERIIEHAVRGMLPK-GRK 207 (208)
Q Consensus 189 ~P~~IlkrAVrGMLPk-n~L 207 (208)
+|++||++|||||||| |+|
T Consensus 69 ~P~~Il~~AVrGMLP~K~~l 88 (178)
T 3jyw_M 69 APSRIFYKALRGMVSHKTAR 88 (178)
T ss_dssp STTTHHHHHTTSSSCSSSHH
T ss_pred CHHHHHHHHHHHHhhcccHh
Confidence 9999999999999995 654
No 14
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=49.17 E-value=9.1 Score=28.95 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=23.6
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 028533 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (208)
Q Consensus 106 r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVI 150 (208)
-.|+=|-| -|++|..++++|. .||.|+|-
T Consensus 52 t~fi~vv~----wgk~AE~~~~yl~------------KG~~V~Ve 80 (108)
T 3koj_A 52 PARLKVVG----WGAVAQELQDRCR------------LNDEVVLE 80 (108)
T ss_dssp CEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----EhHHHHHHHHhCC------------CCCEEEEE
Confidence 36777755 4789999999997 89998875
No 15
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=42.33 E-value=5.3 Score=35.11 Aligned_cols=17 Identities=18% Similarity=0.512 Sum_probs=0.0
Q ss_pred CccccCCceeeecCCCC
Q 028533 1 MATLCTPTCVIFSSLQS 17 (208)
Q Consensus 1 ma~l~~~~~~~~~s~~~ 17 (208)
||+.|+++++.-.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (269)
T 2wsc_2 1 MASACASSAIAAVAIST 17 (269)
T ss_dssp -----------------
T ss_pred CchhHhhHHHHHhhcCc
Confidence 89999999988555433
No 16
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=41.16 E-value=75 Score=25.60 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=28.0
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEe
Q 028533 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 151 (208)
Q Consensus 105 ~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVIN 151 (208)
...|+-|=+-| |.||..|.++|. .|+.|+|.=
T Consensus 84 ~tdf~~V~vfG---g~lAE~i~~ylk------------kG~rVlVeG 115 (148)
T 3stb_C 84 DKDFHTVRVFD---SDYSSRVKEQLR------------DGEWFLVTG 115 (148)
T ss_dssp SEEEEEEEECS---HHHHHHHHHHCC------------TTCEEEEEE
T ss_pred ccceEEEEEEC---ChHHHHHHHHhc------------CCCEEEEEE
Confidence 56899998877 899999999998 899998863
No 17
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=34.00 E-value=22 Score=27.36 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=24.3
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEe
Q 028533 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVN 151 (208)
Q Consensus 106 r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVIN 151 (208)
-.|+=|-| -|++|..++++|. .||.|+|.=
T Consensus 62 t~w~~v~~----wg~~Ae~~~~~l~------------KG~~V~VeG 91 (128)
T 4dam_A 62 TNFFTVWA----NRQLATNASGSLA------------VGDPVVVQG 91 (128)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred cEEEEEEE----EcHHHHHHHHhcC------------CCCEEEEEE
Confidence 36777765 4789999999997 899998863
No 18
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=31.76 E-value=26 Score=25.88 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=22.2
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 028533 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (208)
Q Consensus 106 r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVI 150 (208)
-.|+=|-| -|++|..++++|. .||.|.|.
T Consensus 49 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 77 (116)
T 3vdy_A 49 ADYVNCTL----WRKTAENTALYCQ------------KGSLVGVS 77 (116)
T ss_dssp EEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----ECHHHHHHHHhCC------------CCCEEEEE
Confidence 36755544 5889999999987 78888875
No 19
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=28.86 E-value=28 Score=26.05 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=23.3
Q ss_pred ceEEEEeCCCCCch-hhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 028533 106 KTWYVVDATDKILG-RLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (208)
Q Consensus 106 r~W~VIDA~gqiLG-RLAS~IAk~L~GKhKp~ytP~~D~GD~VVVI 150 (208)
-.||=|-| -| ++|..++++|. .||.|+|.
T Consensus 53 t~~~~v~~----wg~~~Ae~~~~~l~------------KG~~V~V~ 82 (124)
T 3ulp_A 53 TDWHRIVV----YDQNIVDLIDKYLR------------KGRRVYVQ 82 (124)
T ss_dssp EEEEEEEE----CCHHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----EEchHHHHHHhhcC------------CCCEEEEE
Confidence 46776655 46 79999999997 79999886
No 20
>3bbo_4 Ribosomal protein L34; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=28.51 E-value=12 Score=30.55 Aligned_cols=9 Identities=33% Similarity=0.479 Sum_probs=0.0
Q ss_pred ceEEEeccc
Q 028533 59 SFKVRCCQN 67 (208)
Q Consensus 59 ~~~v~c~~~ 67 (208)
+++|+|++.
T Consensus 86 gl~Vr~Gkr 94 (152)
T 3bbo_4 86 RFVVRAGKA 94 (152)
T ss_dssp ---------
T ss_pred ceEEEccCc
Confidence 688887775
No 21
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=28.33 E-value=31 Score=26.42 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=15.4
Q ss_pred eEEEEeCCCCCchhhHHHHHHHHh
Q 028533 107 TWYVVDATDKILGRLASTIAIHIR 130 (208)
Q Consensus 107 ~W~VIDA~gqiLGRLAS~IAk~L~ 130 (208)
.|+=|-| -|++|..++++|.
T Consensus 49 ~~~~v~~----wg~~Ae~~~~~l~ 68 (134)
T 2vw9_A 49 CFIDARL----FGRTAEIANQYLS 68 (134)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC
T ss_pred EEEEEEE----EcHHHHHHHHhCC
Confidence 5666544 5789999999986
No 22
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=27.04 E-value=36 Score=26.87 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=22.1
Q ss_pred eEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 028533 107 TWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (208)
Q Consensus 107 ~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVI 150 (208)
.|+=|=| -|++|..++++|. .|+.|+|.
T Consensus 63 ~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~Ve 90 (153)
T 1z9f_A 63 DFFRIVT----FGRLAEFARTYLT------------KGRLVLVE 90 (153)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred EEEEEEE----ECHHHHHHHhhCC------------CCCEEEEE
Confidence 5766654 4789999999987 78888875
No 23
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=26.88 E-value=36 Score=27.18 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=22.8
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 028533 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (208)
Q Consensus 106 r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVI 150 (208)
-.||=|-+ -|++|..++++|. .||.|+|.
T Consensus 52 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~Ve 80 (168)
T 3afp_A 52 ALFLRCNI----WREAAENVAESLT------------RGARVIVT 80 (168)
T ss_dssp CEEEEEEE----EHHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----ehHHHHHHHHhCC------------CCCEEEEE
Confidence 35776654 4789999999997 78888886
No 24
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=26.29 E-value=12 Score=28.96 Aligned_cols=44 Identities=16% Similarity=0.073 Sum_probs=9.0
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEec-eeeEE
Q 028533 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA-EKVAV 157 (208)
Q Consensus 106 r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINA-ekI~v 157 (208)
..|.|+|..|+++|...-..+..-.| .++. +-.|+|+|. .+|.+
T Consensus 4 E~~~v~d~~~~~~g~~~r~~~~~~~~----~~~~----~v~~~i~~~~g~vLl 48 (190)
T 1hzt_A 4 EHVILLNAQGVPTGTLEKYAAHTADT----RLHL----AFSSWLFNAKGQLLV 48 (190)
T ss_dssp -------------------------------CEE----CEEEEEECTTCCEEE
T ss_pred eEEEEECCCCCEeeeEEHhhhcccCC----ceEE----EEEEEEEcCCCEEEE
Confidence 46899999999999765544432222 1222 456777774 34555
No 25
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=25.87 E-value=33 Score=25.78 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=28.6
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEece-eeEE
Q 028533 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNAE-KVAV 157 (208)
Q Consensus 105 ~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINAe-kI~v 157 (208)
...|-|+|..|+.+|.+-...++... .++ .+-.|+|+|.+ +|.+
T Consensus 9 ~E~~~i~d~~~~~~g~~~r~~~~~~~-----~~~----~~~~v~i~~~~~~vLl 53 (180)
T 2fkb_A 9 TEWVDIVNEENEVIAQASREQMRAQC-----LRH----RATYIVVHDGMGKILV 53 (180)
T ss_dssp CCEEEEECTTSCEEEEEEHHHHHHHT-----CCE----EEEEEEEECSSSCEEE
T ss_pred CeeEEEECCCCCEeeEEEHHHhhccC-----cee----eEEEEEEECCCCEEEE
Confidence 34799999999999998766554321 122 24567777754 4555
No 26
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=25.63 E-value=36 Score=27.57 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=16.1
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHh
Q 028533 106 KTWYVVDATDKILGRLASTIAIHIR 130 (208)
Q Consensus 106 r~W~VIDA~gqiLGRLAS~IAk~L~ 130 (208)
-.||=|=+ .|++|..++++|.
T Consensus 53 t~~i~vv~----wg~~Ae~~~~~l~ 73 (178)
T 1eqq_A 53 TEWHRVVL----FGKLAEVASEYLR 73 (178)
T ss_dssp EEEEEEEE----CHHHHHHHHHHCC
T ss_pred cEEEEEEE----ccHHHHHHHHhcC
Confidence 35776654 5789999999986
No 27
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=24.85 E-value=42 Score=25.99 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 028533 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (208)
Q Consensus 106 r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVI 150 (208)
-.||=|-+ .|++|..++++|. .||.|+|.
T Consensus 52 t~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 80 (145)
T 1qvc_A 52 TEWHRVVL----FGKLAEVASEYLR------------KGSQVYIE 80 (145)
T ss_dssp CEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----ehHHHHHHHHhcC------------CCCEEEEE
Confidence 46777755 4679999999987 67777765
No 28
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=24.07 E-value=60 Score=23.18 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=19.9
Q ss_pred cceEEEEeCCCCCchh---------hHHHHHHHHh
Q 028533 105 DKTWYVVDATDKILGR---------LASTIAIHIR 130 (208)
Q Consensus 105 ~r~W~VIDA~gqiLGR---------LAS~IAk~L~ 130 (208)
-..++|||.+|+++.+ |...|.++|.
T Consensus 121 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~ 155 (160)
T 3lor_A 121 TPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS 155 (160)
T ss_dssp SSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHT
T ss_pred cceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHh
Confidence 4578999999988876 6666777665
No 29
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=24.01 E-value=46 Score=24.05 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=18.7
Q ss_pred ceEEEEeCCCCCchh---------hHHHHHHHHhc
Q 028533 106 KTWYVVDATDKILGR---------LASTIAIHIRG 131 (208)
Q Consensus 106 r~W~VIDA~gqiLGR---------LAS~IAk~L~G 131 (208)
...+|||.+|++..+ |...|.++|.+
T Consensus 134 P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~ 168 (169)
T 2v1m_A 134 FSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEK 168 (169)
T ss_dssp TCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHHC
T ss_pred ceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 368999999998765 45566666653
No 30
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=23.92 E-value=40 Score=26.63 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=20.7
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 028533 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (208)
Q Consensus 106 r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVI 150 (208)
-.||=|=| .|++|..++++|. .|+.|+|.
T Consensus 55 t~~i~vv~----wg~~Ae~~~~~l~------------KG~~V~Ve 83 (158)
T 3tqy_A 55 TEWHRIAF----FNRLAEIVGEYLR------------KGSKIYIE 83 (158)
T ss_dssp EEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred eEEEEEEE----EhHHHHHHHhhcC------------CCCEEEEE
Confidence 36765544 5789999999986 56666654
No 31
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=22.40 E-value=1.2e+02 Score=22.40 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=24.3
Q ss_pred cceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEEec
Q 028533 105 DKTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVVNA 152 (208)
Q Consensus 105 ~r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVINA 152 (208)
..+++|| | .|+++..+|..|.. .|..|+++.-
T Consensus 19 ~~~v~Ii---G--~G~iG~~la~~L~~-----------~g~~V~vid~ 50 (155)
T 2g1u_A 19 SKYIVIF---G--CGRLGSLIANLASS-----------SGHSVVVVDK 50 (155)
T ss_dssp CCEEEEE---C--CSHHHHHHHHHHHH-----------TTCEEEEEES
T ss_pred CCcEEEE---C--CCHHHHHHHHHHHh-----------CCCeEEEEEC
Confidence 4578888 4 49999999999972 4778888843
No 32
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=22.33 E-value=59 Score=23.52 Aligned_cols=25 Identities=16% Similarity=0.104 Sum_probs=22.7
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHh
Q 028533 106 KTWYVVDATDKILGRLASTIAIHIR 130 (208)
Q Consensus 106 r~W~VIDA~gqiLGRLAS~IAk~L~ 130 (208)
..|++||++++.+-.++..|...+.
T Consensus 141 ~~~~~id~~~~~~~ev~~~I~~~~~ 165 (173)
T 3kb2_A 141 LHTYSWDTGQWSSDEIAKDIIFLVE 165 (173)
T ss_dssp SCEEEEETTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHh
Confidence 3789999999999999999999987
No 33
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=20.79 E-value=49 Score=26.19 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=24.0
Q ss_pred cceEEEEeCCCCCchhh-HHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 028533 105 DKTWYVVDATDKILGRL-ASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (208)
Q Consensus 105 ~r~W~VIDA~gqiLGRL-AS~IAk~L~GKhKp~ytP~~D~GD~VVVI 150 (208)
.-.||=|-+- |++ |..++++|. .|+.|+|.
T Consensus 50 ~t~w~~vv~w----gk~lAe~~~~yl~------------KG~~V~Ve 80 (148)
T 3k7u_C 50 EKDHHTIRCF----GELFSAEVKQKVK------------EGNVVCVN 80 (148)
T ss_dssp CEEEEEEEEE----SHHHHHHHHHHCC------------TTCEEEEE
T ss_pred ccEEEEEEEE----CcHHHHHHHhhCC------------CCCEEEEE
Confidence 3478887664 575 999999997 89999886
No 34
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=20.59 E-value=36 Score=26.47 Aligned_cols=48 Identities=15% Similarity=0.396 Sum_probs=28.1
Q ss_pred ccceEEEeccccccccC-----cchhhhh---hhcccCCcccceeccCCCCCCCcccceEEEEeCCCCC
Q 028533 57 KRSFKVRCCQNLSLVPD-----NQRWMFE---QSEVNGPDIWNNTWYPKAADHRHSDKTWYVVDATDKI 117 (208)
Q Consensus 57 ~~~~~v~c~~~~~~v~~-----~~r~m~~---~~e~~g~~~~~kT~~~k~~~~~~~~r~W~VIDA~gqi 117 (208)
+.+++|+++- .++|+ +.||.|. .||-.|. ..+.-..|.|.|.||+|++
T Consensus 6 t~~I~V~V~~--~y~~e~S~p~~~~y~faY~I~I~N~~~-----------~~vQL~sRhW~Itd~~g~~ 61 (127)
T 2f1e_A 6 RYRVEVEVSP--RFLAHQSTPDEGRYAFAYSIRIQNAGA-----------VPARLVARHWQITDGNGRT 61 (127)
T ss_dssp CCCEEEEEEE--EECSTTCBGGGTBEEEEEEEEEEECSS-----------SCEEEEEEEEEEEETTSCE
T ss_pred ECCEEEEEEE--EEchhhCCCcCCEEEEEEEEEEEeCCC-----------CCEEEEeceEEEEeCCCCE
Confidence 4566676655 55664 5565542 3333332 2222357999999999875
No 35
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=20.52 E-value=55 Score=27.29 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=23.0
Q ss_pred ceEEEEeCCCCCchhhHHHHHHHHhcCCCCccCCCCCCCCEEEEE
Q 028533 106 KTWYVVDATDKILGRLASTIAIHIRGKNLATYTPSVDMGAYVIVV 150 (208)
Q Consensus 106 r~W~VIDA~gqiLGRLAS~IAk~L~GKhKp~ytP~~D~GD~VVVI 150 (208)
-.||=|-| -|++|..++++|. .||.|+|.
T Consensus 52 T~wi~Vva----wgklAE~v~~~L~------------KG~~V~Ve 80 (199)
T 3eiv_A 52 SLFLTCSV----WRQAAENVAESLQ------------RGMRVIVQ 80 (199)
T ss_dssp CEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred cEEEEEEE----EhHHHHHHHHhcC------------CCCEEEEE
Confidence 46776655 4689999999997 78888885
Done!