BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028535
MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS
SPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQ
VRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAEGF
SDMEEFRDLHACLDELKTKLQSGPVAT

High Scoring Gene Products

Symbol, full name Information P value
AT5G17270 protein from Arabidopsis thaliana 1.9e-47
AT5G37130 protein from Arabidopsis thaliana 9.4e-43

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028535
        (207 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2167165 - symbol:AT5G17270 species:3702 "Arabi...   504  1.9e-47   1
TAIR|locus:2166153 - symbol:AT5G37130 species:3702 "Arabi...   414  9.4e-43   2


>TAIR|locus:2167165 [details] [associations]
            symbol:AT5G17270 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0006406 "mRNA export from
            nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
            evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
            evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
            [GO:0009909 "regulation of flower development" evidence=RCA]
            [GO:0010074 "maintenance of meristem identity" evidence=RCA]
            [GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
            "protein ubiquitination" evidence=RCA] [GO:0016571 "histone
            methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
            evidence=RCA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=RCA] InterPro:IPR011990 InterPro:IPR013026
            InterPro:IPR019734 Pfam:PF13181 PROSITE:PS50005 PROSITE:PS50293
            SMART:SM00028 EMBL:CP002688 GenomeReviews:BA000015_GR
            eggNOG:COG0457 Gene3D:1.25.40.10 EMBL:AB005238 IPI:IPI00522610
            RefSeq:NP_197229.1 UniGene:At.54881 ProteinModelPortal:Q9FFI4
            SMR:Q9FFI4 PaxDb:Q9FFI4 PRIDE:Q9FFI4 EnsemblPlants:AT5G17270.1
            GeneID:831592 KEGG:ath:AT5G17270 TAIR:At5g17270
            HOGENOM:HOG000030273 InParanoid:Q9FFI4 OMA:RWESTRG PhylomeDB:Q9FFI4
            ProtClustDB:CLSN2686329 Genevestigator:Q9FFI4 Uniprot:Q9FFI4
        Length = 899

 Score = 504 (182.5 bits), Expect = 1.9e-47, P = 1.9e-47
 Identities = 100/201 (49%), Positives = 137/201 (68%)

Query:     2 VLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCXXXXXXXXXXXXCAKDLXXXXXXXXX 61
             +L M+ NKR+D VLL+RI+ ++E R S  +S S               K           
Sbjct:   702 ILKMSKNKRVDVVLLDRIMTELEKRNSACKSSSSSTETEASSDESTETKPCTATPA---- 757

Query:    62 XXXXIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQV 121
                       E +  +E LGK++QQ+V++ES+A++WGLYARW + KGDLT+CSEALLKQV
Sbjct:   758 ----------ETQRQLELLGKVIQQIVKTESTAEIWGLYARWSRIKGDLTVCSEALLKQV 807

Query:   122 RSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQAE-GF 180
             RSYQGS++WKD++RFK+F+ ASLELC+VYMEIS+S GS+RELF AEMHLKN +KQA   F
Sbjct:   808 RSYQGSEVWKDKERFKKFARASLELCRVYMEISASIGSKRELFTAEMHLKNTIKQATVSF 867

Query:   181 SDMEEFRDLHACLDELKTKLQ 201
              D EE ++L +CL+E++  +Q
Sbjct:   868 LDSEELKELESCLEEVRNVMQ 888


>TAIR|locus:2166153 [details] [associations]
            symbol:AT5G37130 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0048046 "apoplast"
            evidence=IDA] InterPro:IPR011990 InterPro:IPR013026
            InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
            EMBL:CP002688 GO:GO:0048046 GO:GO:0016740 Gene3D:1.25.40.10
            IPI:IPI00528958 RefSeq:NP_198529.3 UniGene:At.9476
            ProteinModelPortal:F4K5W3 SMR:F4K5W3 PRIDE:F4K5W3
            EnsemblPlants:AT5G37130.1 GeneID:833685 KEGG:ath:AT5G37130
            OMA:AWNNIAS Uniprot:F4K5W3
        Length = 877

 Score = 414 (150.8 bits), Expect = 9.4e-43, Sum P(2) = 9.4e-43
 Identities = 75/126 (59%), Positives = 104/126 (82%)

Query:    77 MEFLGKILQQVVRSESSADMWGLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRF 136
             +E  GKI+QQ+V++ES+ + WGLYARW +  GDLT+CSEALLKQVRSY G ++WKD++RF
Sbjct:   742 IELFGKIIQQIVKTESTFENWGLYARWSRINGDLTICSEALLKQVRSYLGVEMWKDKERF 801

Query:   137 KRFSYASLELCKVYMEISSSSGSRRELFAAEMHLKNVLKQA-EGFSDMEEFRDLHACLDE 195
             K+F+ ASLELC+VY+EIS+S  S+RELF+AEMHLKN +KQA + F + EE ++L +CL+E
Sbjct:   802 KKFARASLELCRVYIEISASVESKRELFSAEMHLKNTIKQARKSFGETEELKELESCLEE 861

Query:   196 LKTKLQ 201
             ++   Q
Sbjct:   862 VRNVTQ 867

 Score = 73 (30.8 bits), Expect = 9.4e-43, Sum P(2) = 9.4e-43
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query:     2 VLNMTNNKRIDTVLLERIVLDMEGRTSIIESES 34
             ++ +T NK I  VLL+R++ D+E R    ES S
Sbjct:   694 IMRLTQNKSISVVLLDRLMTDLENRNISYESSS 726


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      207       182   0.00098  109 3  11 22  0.41    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  154 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.89u 0.15s 15.04t   Elapsed:  00:00:00
  Total cpu time:  14.89u 0.15s 15.04t   Elapsed:  00:00:00
  Start:  Sat May 11 00:41:39 2013   End:  Sat May 11 00:41:39 2013

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