BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028535
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8TRZ4|ACDA1_METAC Acetyl-CoA decarbonylase/synthase complex subunit alpha 1
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=cdhA1 PE=3 SV=1
Length = 806
Score = 37.4 bits (85), Expect = 0.074, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 44 TNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARW 103
T T + +P+ + P ++ MGRS + H ME K L + D W ++
Sbjct: 698 TAETWQEAIPMMAKACIRPSDNSMGRSIKLTHWMELHKKYL-----GKDPEDWW----KF 748
Query: 104 LKNKGDLTMCS-EALLKQVRSYQGSDL-WKDR 133
++N+ DL + EALLK++ S G ++ WK +
Sbjct: 749 VRNEADLPLAKREALLKELESKHGWEIDWKKK 780
>sp|Q54BW6|TTC27_DICDI Tetratricopeptide repeat protein 27 homolog OS=Dictyostelium
discoideum GN=ttc27 PE=3 SV=1
Length = 853
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 76/152 (50%), Gaps = 13/152 (8%)
Query: 50 KDLPVESVHVSSPEE----SIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLK 105
K L + + HV S ++ I G S+ + + E G++ ++ ++ D+W LY+ +
Sbjct: 699 KLLSIIADHVVSKDQLDKQGISG-SKMEKTVSELFGRLTSKLT---NNPDLWRLYSSYHH 754
Query: 106 NKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFA 165
G++ + K RS + + ++ F++ + LC +Y + ++S +++
Sbjct: 755 RLGNVDKAIDLQQKACRSCESAHWEGEQSTFEKVLQFNTTLCDLYFQYPNTSN----IYS 810
Query: 166 AEMHLKNVLKQAE-GFSDMEEFRDLHACLDEL 196
A++ +K++LK+ E + + E +++ L +L
Sbjct: 811 AKLKVKSILKKCESSWKETEHYKNFEQLLIKL 842
>sp|Q8THW2|ACDA3_METAC Acetyl-CoA decarbonylase/synthase complex subunit alpha 3
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=cdhA3 PE=3 SV=1
Length = 805
Score = 34.7 bits (78), Expect = 0.47, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 44 TNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARW 103
T T + LP+ + P ++ MGRS + H ME K L V E D W ++
Sbjct: 697 TAETWQEALPMMAKACIRPSDNNMGRSIKLTHWMELSKKYLG--VEPE---DWW----KF 747
Query: 104 LKNKGDLTMCS-EALLKQVRSYQGSDL-WKDR 133
++N+ DL + E LLK++ + QG ++ WK +
Sbjct: 748 VRNEADLPLAKREELLKRLEAEQGWEIDWKRK 779
>sp|Q49163|ACDA2_METMA Acetyl-CoA decarbonylase/synthase complex subunit alpha 2
OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647
/ Goe1 / Go1 / JCM 11833 / OCM 88) GN=cdhA2 PE=1 SV=4
Length = 807
Score = 34.7 bits (78), Expect = 0.48, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 44 TNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARW 103
T T + +P+ + P ++ MGR+ + H ME K L D W ++
Sbjct: 698 TAETWQEAIPMMAKACIRPSDNSMGRAIKLTHWMELHKKYLG----GSEPEDWW----KF 749
Query: 104 LKNKGDLTMCS-EALLKQVRSYQGSDL-WKDR 133
++N+ DL + + EALLK++ + +G ++ WK +
Sbjct: 750 VRNEADLPLANREALLKKLEAERGWEIDWKKK 781
>sp|Q9BV73|CP250_HUMAN Centrosome-associated protein CEP250 OS=Homo sapiens GN=CEP250 PE=1
SV=2
Length = 2442
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 1 MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
++ + + V L + LD+E R+ ++++S + H+L + A++L V
Sbjct: 1575 LIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQI-HDLESHSTVLARELQERDQEVK 1633
Query: 61 SPEESIMGRSRENEHLMEFL 80
S E I R+ EHL + L
Sbjct: 1634 SQREQIEELQRQKEHLTQDL 1653
>sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana
GN=ABCB19 PE=1 SV=1
Length = 1252
Score = 32.3 bits (72), Expect = 2.3, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 41 LNRTNNTCAKDLPVES---VHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMW 97
++ TN T AK +P E+ S P + + + ++L+ F+G L +V S +
Sbjct: 1 MSETNTTDAKTVPAEAEKKKEQSLPFFKLFSFADKFDYLLMFVGS-LGAIVHGSSMPVFF 59
Query: 98 GLYARWLKNKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELC-KVYMEISS- 155
L+ + + G M ++ +V Y L+ F Y L +C Y EI+
Sbjct: 60 LLFGQMVNGFGKNQMDLHQMVHEVSRYS---LY--------FVYLGLVVCFSSYAEIACW 108
Query: 156 -SSGSRRELFAAEMHLKNVLKQAEGFSDME 184
SG R+ + +L+ VLKQ GF D +
Sbjct: 109 MYSGERQVAALRKKYLEAVLKQDVGFFDTD 138
>sp|Q8TJC6|ACDA2_METAC Acetyl-CoA decarbonylase/synthase complex subunit alpha 2
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=cdhA2 PE=3 SV=1
Length = 805
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 44 TNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARW 103
T T + +P+ + P ++ MGRS + H ME K L V E D W ++
Sbjct: 697 TAETWQEAIPMMAKACIRPSDNNMGRSIKLTHWMELSKKYLG--VEPE---DWW----KF 747
Query: 104 LKNKGDLTMCS-EALLKQVRSYQGSDL-WKDR 133
++N+ DL + E LLK++ + G ++ WK +
Sbjct: 748 VRNEADLPLAKREELLKRLEAEHGWEIDWKRK 779
>sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus musculus GN=Cep250 PE=1
SV=4
Length = 2414
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
M+ + + + V L + LD+E R+ ++++S + H L + AK+L V+
Sbjct: 1567 MITELEGQREMQRVALTHLTLDLEERSQELQAQSSQL-HELENHSTHLAKELQERDQEVT 1625
Query: 61 SPEESIMGRSRENEHLMEFLGKILQQVV 88
S + I ++ E L + L + Q++V
Sbjct: 1626 SQRQQIDELQKQQEQLAQALERKGQELV 1653
>sp|Q6FCE6|HSCA_ACIAD Chaperone protein HscA homolog OS=Acinetobacter sp. (strain ADP1)
GN=hscA PE=3 SV=1
Length = 620
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 159 SRRELFAAEMHLKNVLKQAEGFSDMEEFRDLHACLDELKTKLQSGPV 205
++REL A E LKN G D+++ + LH D+L+ +LQS +
Sbjct: 535 AQRELEALEQALKN----DAGLLDIQQLQALHTAKDQLQQQLQSNDI 577
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,263,687
Number of Sequences: 539616
Number of extensions: 2588118
Number of successful extensions: 7112
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 7111
Number of HSP's gapped (non-prelim): 17
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)