Query 028537
Match_columns 207
No_of_seqs 124 out of 211
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 21:50:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_B TAFII28; histone fold, 100.0 2.8E-42 9.6E-47 261.4 12.1 89 112-201 1-89 (89)
2 3b0c_W CENP-W, centromere prot 98.0 3.4E-05 1.2E-09 55.6 8.5 71 126-197 3-73 (76)
3 1n1j_B NF-YC; histone-like PAI 97.8 4.4E-05 1.5E-09 57.4 6.4 75 120-195 12-86 (97)
4 1b67_A Protein (histone HMFA); 97.7 5.8E-05 2E-09 52.7 5.1 68 126-195 1-68 (68)
5 4g92_C HAPE; transcription fac 97.5 9.4E-05 3.2E-09 57.7 5.2 72 122-194 36-107 (119)
6 1n1j_A NF-YB; histone-like PAI 97.3 0.00068 2.3E-08 50.2 7.2 69 126-195 7-76 (93)
7 2yfw_B Histone H4, H4; cell cy 97.0 0.0023 7.9E-08 48.6 7.4 66 128-195 30-95 (103)
8 1jfi_A Transcription regulator 97.0 0.00081 2.8E-08 50.7 4.7 69 125-194 9-77 (98)
9 1tzy_D Histone H4-VI; histone- 97.0 0.002 7E-08 48.8 7.0 66 127-194 29-94 (103)
10 2byk_B Chrac-14; nucleosome sl 96.9 0.0027 9.3E-08 50.2 7.1 68 127-195 9-77 (128)
11 2byk_A Chrac-16; nucleosome sl 96.8 0.00097 3.3E-08 53.7 4.4 80 124-203 16-99 (140)
12 1ku5_A HPHA, archaeal histon; 96.7 0.0036 1.2E-07 44.0 6.2 65 126-192 5-69 (70)
13 1jfi_B DR1 protein, transcript 96.7 0.0067 2.3E-07 50.8 8.5 69 127-196 15-83 (179)
14 1id3_B Histone H4; nucleosome 96.3 0.011 3.8E-07 45.0 6.7 66 127-194 28-93 (102)
15 2hue_C Histone H4; mini beta s 96.2 0.0076 2.6E-07 44.1 5.3 67 126-194 9-75 (84)
16 1f1e_A Histone fold protein; a 96.1 0.012 4.1E-07 48.1 6.7 70 127-198 82-151 (154)
17 2nqb_C Histone H2A; nucleosome 96.0 0.018 6.3E-07 45.3 6.9 65 127-192 23-87 (123)
18 1tzy_A Histone H2A-IV; histone 95.9 0.02 6.7E-07 45.5 6.9 65 127-192 25-89 (129)
19 1id3_C Histone H2A.1; nucleoso 95.9 0.02 6.9E-07 45.5 6.8 65 127-192 25-89 (131)
20 1f1e_A Histone fold protein; a 95.8 0.02 6.9E-07 46.8 6.8 69 126-195 3-71 (154)
21 3b0c_T CENP-T, centromere prot 95.7 0.024 8.3E-07 43.7 6.3 67 126-194 6-72 (111)
22 2f8n_K Histone H2A type 1; nuc 95.6 0.032 1.1E-06 45.5 7.1 65 127-192 44-108 (149)
23 2f8n_G Core histone macro-H2A. 95.3 0.046 1.6E-06 42.8 7.0 65 127-192 22-86 (120)
24 1taf_B TFIID TBP associated fa 95.2 0.091 3.1E-06 37.8 7.5 65 126-192 5-69 (70)
25 1f66_C Histone H2A.Z; nucleoso 95.0 0.063 2.2E-06 42.5 6.8 66 127-193 27-93 (128)
26 2jss_A Chimera of histone H2B. 94.2 0.16 5.6E-06 42.1 7.9 65 127-192 105-170 (192)
27 1h3o_B Transcription initiatio 94.1 0.25 8.5E-06 36.1 7.8 67 127-194 5-71 (76)
28 4dra_E Centromere protein X; D 93.7 0.32 1.1E-05 36.2 7.8 70 126-196 11-82 (84)
29 3b0b_C CENP-X, centromere prot 93.6 0.32 1.1E-05 35.9 7.5 71 125-196 6-78 (81)
30 2jss_A Chimera of histone H2B. 78.1 10 0.00035 31.2 8.3 64 130-194 6-69 (192)
31 2q2k_A Hypothetical protein; p 76.8 1.1 3.9E-05 31.8 1.8 18 182-199 50-68 (70)
32 1mhq_A ADP-ribosylation factor 75.0 3.1 0.00011 32.8 4.2 40 166-206 104-144 (148)
33 2nqb_D Histone H2B; nucleosome 70.3 12 0.00041 29.6 6.5 64 131-195 37-100 (123)
34 1tzy_B Histone H2B; histone-fo 64.9 18 0.00061 28.8 6.5 64 131-195 40-103 (126)
35 4fhr_B Flagellar motor switch 59.6 17 0.00059 30.4 5.9 68 128-200 133-212 (216)
36 1x5b_A Signal transducing adap 59.4 12 0.00041 29.8 4.7 37 164-200 111-149 (163)
37 1gng_X Frattide, glycogen synt 53.2 5.5 0.00019 25.9 1.4 12 187-198 26-37 (39)
38 1taf_A TFIID TBP associated fa 52.2 58 0.002 22.8 8.1 60 132-193 6-65 (68)
39 1juq_A ADP-ribosylation factor 48.8 15 0.0005 29.6 3.6 36 164-200 114-149 (171)
40 3g2s_A C-terminal fragment of 42.8 21 0.00071 28.2 3.6 35 165-200 113-147 (149)
41 3ksy_A SOS-1, SON of sevenless 42.6 57 0.0019 32.8 7.4 67 125-193 100-168 (1049)
42 2l5a_A Histone H3-like centrom 41.6 1.5E+02 0.005 25.7 8.9 61 133-195 167-227 (235)
43 3pkr_A FLIG, flagellar motor s 40.7 29 0.001 30.3 4.5 68 128-200 190-269 (279)
44 3hjl_A Flagellar motor switch 38.9 52 0.0018 29.2 5.9 54 147-200 260-325 (329)
45 2gsv_A Hypothetical protein YV 37.2 1.1E+02 0.0039 22.2 6.4 43 146-197 22-69 (80)
46 3v9r_B MHF2, uncharacterized p 36.4 47 0.0016 24.9 4.4 44 128-171 2-47 (88)
47 2hue_B Histone H3; mini beta s 32.6 1.2E+02 0.004 21.8 5.9 64 128-192 4-71 (77)
48 1v54_E Cytochrome C oxidase po 31.5 50 0.0017 25.7 4.0 33 116-152 11-48 (109)
49 2ly8_A Budding yeast chaperone 30.8 1.8E+02 0.0061 22.6 7.1 49 145-194 64-112 (121)
50 3b0b_B CENP-S, centromere prot 30.7 59 0.002 24.8 4.2 61 133-194 25-87 (107)
51 4afj_X Proto-oncogene FRAT1; t 30.4 13 0.00043 23.0 0.3 13 186-198 16-28 (30)
52 3byi_A RHO GTPase activating p 28.4 1.1E+02 0.0037 24.4 5.7 58 121-192 55-117 (214)
53 2w9y_A CE-FAR-7, fatty acid/re 28.2 94 0.0032 24.9 5.2 39 157-195 83-121 (140)
54 2qxf_A Exodeoxyribonuclease I; 26.2 49 0.0017 30.7 3.6 31 110-140 417-447 (482)
55 3v9r_A MHF1, uncharacterized p 25.7 1.5E+02 0.0052 21.8 5.6 60 133-193 18-79 (90)
56 3ldz_A STAM-1, signal transduc 25.3 49 0.0017 25.4 3.0 37 165-201 101-139 (140)
57 3zed_D Capsid protein VP3; vir 25.0 76 0.0026 27.6 4.3 43 120-162 138-184 (242)
58 3zyq_A Hepatocyte growth facto 24.8 81 0.0028 26.0 4.4 38 164-201 104-143 (226)
59 3fk2_A Glucocorticoid receptor 24.6 1.2E+02 0.0042 24.9 5.5 44 121-165 88-135 (246)
60 1bh9_A TAFII18; histone fold, 24.4 1.3E+02 0.0045 19.4 4.5 40 133-172 6-45 (45)
61 3rru_A TOM1L1 protein; structu 24.2 93 0.0032 24.5 4.5 35 164-198 116-152 (152)
62 1mfq_C SRP54, signal recogniti 23.7 1E+02 0.0035 24.2 4.5 37 99-138 57-96 (129)
63 2y69_E Cytochrome C oxidase su 23.5 79 0.0027 25.8 4.0 32 117-152 55-91 (152)
64 2ee4_A RHO GTPase activating p 23.0 81 0.0028 25.1 4.0 44 121-165 47-94 (209)
65 3nqj_A Histone H3-like centrom 22.2 2.3E+02 0.0078 20.5 7.4 65 128-193 4-74 (82)
66 1elk_A Target of MYB1; superhe 22.0 55 0.0019 25.6 2.7 38 164-201 116-155 (157)
67 1dum_A Magainin 2; antibiotic, 21.7 44 0.0015 19.7 1.5 13 155-167 10-22 (26)
68 1y14_A B32, RPB4, DNA-directed 21.0 2.9E+02 0.0098 23.0 7.0 90 98-194 85-180 (187)
69 2lmt_A Calmodulin-related prot 20.9 55 0.0019 23.5 2.4 18 177-194 95-112 (148)
70 1ojh_A NBLA; degradation prote 20.7 92 0.0031 22.1 3.4 40 103-142 16-57 (65)
71 4ham_A LMO2241 protein; struct 20.5 40 0.0014 25.1 1.5 19 182-200 50-68 (134)
No 1
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=100.00 E-value=2.8e-42 Score=261.37 Aligned_cols=89 Identities=49% Similarity=0.823 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHhcCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHH
Q 028537 112 FTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAY 191 (207)
Q Consensus 112 fteEQldRYE~fRRS~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~ 191 (207)
||+|||+|||.||||+|+|++|||||+++++ ++||+|++|+|+||||+|||||||+|++||++|++++||+|+||||||
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~ 79 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAV 79 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 8999999999999999999999999999996 589999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCC
Q 028537 192 RRLKLEGKVP 201 (207)
Q Consensus 192 RRL~~~GklP 201 (207)
|||+.+|++|
T Consensus 80 rrl~~~g~~p 89 (89)
T 1bh9_B 80 RRLKSKGQIP 89 (89)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHcCCCC
Confidence 9999999998
No 2
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.99 E-value=3.4e-05 Score=55.57 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=63.3
Q ss_pred cCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhc
Q 028537 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLE 197 (207)
Q Consensus 126 S~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~ 197 (207)
..||++.|+|||.++.++..||.+...+|.-.+-+||-.|..+|.+++... .+.-|.++||..|.+.|..+
T Consensus 3 ~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~-~rKTI~~~dI~~A~~~ll~k 73 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFEN-KSKIIKPEHTIAAAKVILKK 73 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSBCHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHH
Confidence 469999999999988887789999999999999999999999999998764 56689999999999988754
No 3
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.79 E-value=4.4e-05 Score=57.44 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=58.1
Q ss_pred HHHHHhcCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 120 YESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 120 YE~fRRS~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
-..|+...||-+.|||||..--....||....++++..+-+||.+|++.|-..... +.+.-|+|.||..|++...
T Consensus 12 ~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~-~krktI~~~di~~Av~~~e 86 (97)
T 1n1j_B 12 VKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTED-NKRRTLQRNDIAMAITKFD 86 (97)
T ss_dssp --------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHTTCG
T ss_pred cCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccCCHHHHHHHHhcCc
Confidence 45688999999999999987544357999999999999999999999999988764 4577899999999987653
No 4
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=97.67 E-value=5.8e-05 Score=52.74 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=60.2
Q ss_pred cCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 126 S~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
+.||++.|+|||..+ +...++.....++.-.+..|+-.|.+.|-.+...- .+.-|.|.||..|.++|+
T Consensus 1 ~~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~-kRkTI~~~Di~~A~~~l~ 68 (68)
T 1b67_A 1 GELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHA-GRKTIKAEDIELARKMFK 68 (68)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHGGGGC
T ss_pred CCCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCHHHHHHHHHhcC
Confidence 469999999999998 66789999999999999999999999999987653 566799999999998874
No 5
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.54 E-value=9.4e-05 Score=57.70 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=61.6
Q ss_pred HHHhcCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 122 SFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 122 ~fRRS~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
.|+-..||-+.|||||..--....|+....++++..+-+||.+|++.|-.++... .+.=|+|.||..|++..
T Consensus 36 d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~-krktI~~~di~~Av~~~ 107 (119)
T 4g92_C 36 DYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDN-KRRTLQRSDIAAALSKS 107 (119)
T ss_dssp CSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHTTC
T ss_pred ccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCccCHHHHHHHHhcC
Confidence 3677789999999999865555579999999999999999999999999987654 45679999999999764
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.32 E-value=0.00068 Score=50.18 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=59.8
Q ss_pred cCCChhHHHHHHHHhcC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 126 SALQKSNMRRLLVSITG-SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 126 S~F~K~~IKRLi~~vtg-sqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
..||++.|+|||..... ...||.....++.-.+.+||-.|.+.|-.++... .+.-|++.||..|+++|.
T Consensus 7 ~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~-kRkTI~~~Dv~~Al~~l~ 76 (93)
T 1n1j_A 7 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQE-KRKTINGEDILFAMSTLG 76 (93)
T ss_dssp CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHHHTT
T ss_pred ccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCHHHHHHHHHHcC
Confidence 36999999999999854 3479999999999999999999999999997754 566799999999998764
No 7
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=96.99 E-value=0.0023 Score=48.58 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=58.5
Q ss_pred CChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 128 LQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 128 F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
||++.|+||+.+. |-..||..+...++.+.+.|+-+|++.|...+..- .+.=|.|.||.-|++++.
T Consensus 30 ip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha-kRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 30 ITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA-KRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCcHHHHHHHHHHcC
Confidence 9999999999875 44679999999999999999999999999998754 455699999999999883
No 8
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.98 E-value=0.00081 Score=50.70 Aligned_cols=69 Identities=9% Similarity=0.280 Sum_probs=54.9
Q ss_pred hcCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 125 RSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 125 RS~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
...||=+.|||||..--....|+....++++..+-+|+.+|++.|-.+... ..+.-|+|.||..|++.-
T Consensus 9 ~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~-~krktI~~~di~~av~~~ 77 (98)
T 1jfi_A 9 NARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQS-RNAKTMTTSHLKQCIELE 77 (98)
T ss_dssp -CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHT-C---CBCHHHHHTTCC--
T ss_pred CCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCeecHHHHHHHHhcC
Confidence 357999999999987443357999999999999999999999999988664 356789999999988764
No 9
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=96.98 E-value=0.002 Score=48.80 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=58.4
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
.||++.|+||+.+. |-..||..+...++.+.+.|+-+|++.|...+..- .+.=|.|.||.-|++++
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha-kRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 29 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA-KRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHHHc
Confidence 39999999999875 44579999999999999999999999999998754 45569999999999987
No 10
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=96.87 E-value=0.0027 Score=50.15 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=57.5
Q ss_pred CCChhHHHHHHHHhcC-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITG-SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtg-sqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
.||.+.|+|||..+.. ...||.....+|.=.+-+||-.|..+|.+++... .+.-|++.||-.|+.+|-
T Consensus 9 ~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~-kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 9 NLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQ-NHKTITAKDILQTLTELD 77 (128)
T ss_dssp --CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSCCHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCHHHHHHHHHHcC
Confidence 6999999999997653 4469999999999999999999999999997653 567899999999988764
No 11
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.85 E-value=0.00097 Score=53.65 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=53.3
Q ss_pred HhcCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH----hcCC
Q 028537 124 RRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK----LEGK 199 (207)
Q Consensus 124 RRS~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~----~~Gk 199 (207)
....||-+.|||||..--....|+....++|+-.+-+||.+|++.|-.++.....+.-|++.||..|++... +.+-
T Consensus 16 ~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~di 95 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQI 95 (140)
T ss_dssp -------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTTT
T ss_pred cCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhcc
Confidence 345799999999998654445799999999999999999999999999973344677899999999998532 4466
Q ss_pred CCCC
Q 028537 200 VPKR 203 (207)
Q Consensus 200 lP~r 203 (207)
||.+
T Consensus 96 vP~k 99 (140)
T 2byk_A 96 VPQK 99 (140)
T ss_dssp SCSC
T ss_pred ccch
Confidence 6654
No 12
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.74 E-value=0.0036 Score=44.01 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=56.8
Q ss_pred cCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 126 S~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
+.||++.|+||+... |...+|..+...+..+++.|+-+|.+.|......- .+.-|.|.+|.-|.+
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~ha-kRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHA-GRKTVKVEDIKLAIK 69 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCSEECHHHHHHHHT
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHH
Confidence 579999999999986 66789999999999999999999999999887653 456799999998875
No 13
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.69 E-value=0.0067 Score=50.84 Aligned_cols=69 Identities=13% Similarity=0.263 Sum_probs=61.4
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHh
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKL 196 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~ 196 (207)
.||++.|.|||.+++.+.+|+.....+|.=.+-+||-.|..+|.+++... .+.-|.+.||-.|+..|--
T Consensus 15 ~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~-~RKTI~~eDVl~Al~~LgF 83 (179)
T 1jfi_B 15 TIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKS-EKKTISPEHVIQALESLGF 83 (179)
T ss_dssp CCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHHhcCh
Confidence 59999999999998765689999999999999999999999999998754 5678999999999988753
No 14
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.26 E-value=0.011 Score=44.96 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=58.2
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
.||++.|+||+.+. |-..||..+.-.+..+.+.|+-+|+..|...+..- .+.=|.+.+|.-|++++
T Consensus 28 ~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~Ha-kRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 28 GITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHA-KRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCcHHHHHHHHHHc
Confidence 49999999999885 55579999999999999999999999999998754 44569999999999987
No 15
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=96.20 E-value=0.0076 Score=44.08 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=58.2
Q ss_pred cCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 126 S~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
..|+++.|+||+.+. |-..||..+.-.+..+.+.|+-+|+..|...+..- .+.=|.+.+|.-|++++
T Consensus 9 ~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha-~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 9 QGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA-KRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCcHHHHHHHHHHc
Confidence 369999999999875 55579999999999999999999999999998754 34568899999998876
No 16
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=96.13 E-value=0.012 Score=48.12 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=62.7
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhcC
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEG 198 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~G 198 (207)
.||++.|+||+... |..+||......+..+.+.|+-+|+.+|-+.+..- .+.-|.|.||..|+++..-+|
T Consensus 82 ~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha-~RKTIt~eDV~~Al~~~~~~~ 151 (154)
T 1f1e_A 82 LFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADED-GRKTVQGEDVEKAITYSMPKG 151 (154)
T ss_dssp CCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHHSGGG
T ss_pred cCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccCHHHHHHHHHhcCCcc
Confidence 59999999999987 77799999999999999999999999999997654 567899999999999886654
No 17
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=95.98 E-value=0.018 Score=45.25 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=57.2
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
.||-+-|.|+|..-.....|+....+.++++--.|+.||.|.|-...... ...-|.|.||+.|++
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~-k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIR 87 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccccHHHHHHHHh
Confidence 47888899999987667789999999999999999999999998887653 467899999999988
No 18
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=95.94 E-value=0.02 Score=45.49 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=57.3
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
.||-+-|.|+|..-.+...|+....+.++++--.|+.||.|.|-...... ...-|.|.||+.|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~-k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDN-KKTRIIPRHLQLAIR 89 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEcHHHHHHHHh
Confidence 57888899999987667789999999999999999999999998887653 467899999999988
No 19
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.89 E-value=0.02 Score=45.52 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=57.0
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
.||-+-|+|+|..-.....|+....+.++++--.|+.||.|.|-...... ...-|.|.||+.|++
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~-k~krItp~hI~lAI~ 89 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDN-KKTRIIPRHLQLAIR 89 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCceEcHHHHHHHHh
Confidence 47888899999987666789999999999999999999999998886653 467899999999988
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=95.84 E-value=0.02 Score=46.80 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=61.6
Q ss_pred cCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 126 S~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
+.||++.|+|||...+|..+||......++-..+.|+-.|+..|-+..... .+.-|.+.||..|..+|-
T Consensus 3 ~~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha-~RKTv~a~DV~~a~~~lg 71 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDAS-GKKTLMEEHLKALADVLM 71 (154)
T ss_dssp -CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCSEECHHHHHHHHHHHT
T ss_pred ccCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHHhcc
Confidence 469999999999998787889999999999999999999999999997643 577899999999998883
No 21
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=95.66 E-value=0.024 Score=43.66 Aligned_cols=67 Identities=6% Similarity=0.107 Sum_probs=54.0
Q ss_pred cCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 126 S~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
..|+++.|+||+.... ..+||..+...+..+.+.|+-.|+..|......- .+.-|.+.+|.-|+||.
T Consensus 6 ~~lP~a~I~Ri~r~~g-~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA-~RKTV~~eDV~lalrr~ 72 (111)
T 3b0c_T 6 PEIASSLIKQIFSHYV-KTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHA-GRKTVEMADVELLMRRQ 72 (111)
T ss_dssp ----CHHHHHHHHHHH-CSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHHHC
Confidence 4699999999998874 4589999999999999999999999999887654 45568888888888774
No 22
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=95.60 E-value=0.032 Score=45.52 Aligned_cols=65 Identities=18% Similarity=0.282 Sum_probs=57.0
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
.||=+-|.|+|..-.....|+....+.++++--.|+.||.|.|-...... ...-|.|.||+.|++
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~-krkrItprhI~lAI~ 108 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDN-KKTRIIPRHLQLAIR 108 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCcHHHHHHHHh
Confidence 46778899999987677789999999999999999999999998886653 467899999999988
No 23
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=95.35 E-value=0.046 Score=42.79 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=55.6
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
.||=+.|.|+|....-...|+....+.++++--.|+.||.|.|-...... ...-|.|.||..|++
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~-k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDN-KKGRVTPRHILLAVA 86 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhc-CCceEcHHHHHHHHh
Confidence 47778899999886545689999999999999999999999998886543 467899999999988
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.15 E-value=0.091 Score=37.83 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=56.7
Q ss_pred cCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 126 S~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
+.|+...||++..+ +|-..+|+.++..++--.-..+.+|+.+|.+++..- .+.-|...+|..|++
T Consensus 5 s~lp~~~v~~iaes-~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHa-kRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAES-IGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHA-KRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHH-TTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCeecHHHHHHHHc
Confidence 56999999999877 565689999999999999999999999999998865 456899999998875
No 25
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=94.99 E-value=0.063 Score=42.49 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=55.0
Q ss_pred CCChhHHHHHHHHhcCC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGS-QKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgs-qsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (207)
.||-.-|.|+|..-... ..|+....+.++++--.|+.||+|.|-..... ....-|.|.||.-|++.
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~-~k~krItprhi~lAI~n 93 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD-LKVKRITPRHLQLAIRG 93 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCSEECHHHHHHHHHH
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeEcHHHHHHHHhc
Confidence 47778899999875422 37999999999999999999999999887654 35678999999999873
No 26
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=94.21 E-value=0.16 Score=42.12 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=55.2
Q ss_pred CCChhHHHHHHHHhcCC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGS-QKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgs-qsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
.||=+.|+|+|....+. ..|+....+.++++--.|+.||.|.|-...... ...-|.|.||+.|.+
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~-~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDL-KVKRITPRHLQLAIR 170 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccCHHHHHHHHh
Confidence 46777899999886443 489999999999999999999999998876553 467899999999987
No 27
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=94.11 E-value=0.25 Score=36.13 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=58.5
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
-|+|.++..||.+|.++..+.+.+--++.-||=-||-.+++.|..+.+.|+ +..|.++.|.-.+.|.
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~-s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRK-SSTLEVKDVQLHLERQ 71 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccHHHHHHHHHhh
Confidence 378999999999999998899999999999999999999999999999885 4477787777666653
No 28
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=93.70 E-value=0.32 Score=36.23 Aligned_cols=70 Identities=19% Similarity=0.151 Sum_probs=57.3
Q ss_pred cCCChhHHHHHHHHhcC--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHh
Q 028537 126 SALQKSNMRRLLVSITG--SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKL 196 (207)
Q Consensus 126 S~F~K~~IKRLi~~vtg--sqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~ 196 (207)
.+|++..|.||+..... ..+|+.+.+.+++-+-++||-|-|..|...... .+.+-|.+.||..-+=.|.+
T Consensus 11 ~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~-e~~~~le~e~LEki~pQLlL 82 (84)
T 4dra_E 11 SGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQA-EDALRVDVDQLEKVLPQLLL 82 (84)
T ss_dssp CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcccHHHHHHHHHHHhc
Confidence 47999999999986543 346999999999999999999999999886443 46778999999987766643
No 29
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=93.56 E-value=0.32 Score=35.88 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=57.6
Q ss_pred hcCCChhHHHHHHHHhcC--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHh
Q 028537 125 RSALQKSNMRRLLVSITG--SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKL 196 (207)
Q Consensus 125 RS~F~K~~IKRLi~~vtg--sqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~ 196 (207)
...|++..|.||+..... ..+|+.+.+.+++-+-++||-|-|..|...... .+.+-|...||..-+=.|.+
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~-e~~~~le~~~LEki~pqLlL 78 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQA-EDLEKVDIEHVEKVLPQLLL 78 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCeecHHHHHHHHHHHHh
Confidence 678999999999987655 346899999999999999999999998887544 34567999999887766653
No 30
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=78.13 E-value=10 Score=31.21 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=53.7
Q ss_pred hhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 130 KSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 130 K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
+.-|+|++.++-....+|....-+|..|..-++-.|..+|..+... +....|.+.+|+.|+|.+
T Consensus 6 ~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~-~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 6 SSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAY-NKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHh
Confidence 3449999999987778999999999999999999999999888653 456789999999999855
No 31
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=76.79 E-value=1.1 Score=31.84 Aligned_cols=18 Identities=50% Similarity=0.728 Sum_probs=13.9
Q ss_pred CCchHHHHHHHHHHhc-CC
Q 028537 182 IRPCHIREAYRRLKLE-GK 199 (207)
Q Consensus 182 LqP~HIREA~RRL~~~-Gk 199 (207)
-.-.|||||+|||..+ |.
T Consensus 50 tktahirealrryieeige 68 (70)
T 2q2k_A 50 TKTAHIREALRRYIEEIGE 68 (70)
T ss_dssp CHHHHHHHHHHHHHHHCC-
T ss_pred cchHHHHHHHHHHHHHhcc
Confidence 3457999999999976 54
No 32
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=75.03 E-value=3.1 Score=32.83 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHhcCC-CCCCCCC
Q 028537 166 VETARMVMTERNESGPIRPCHIREAYRRLKLEGK-VPKRSVP 206 (207)
Q Consensus 166 VEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~Gk-lP~rs~~ 206 (207)
-++.+.+...|...=+=.|. |+++|+.|+.+|- +|..++|
T Consensus 104 k~kil~li~~W~~~f~~~p~-i~~~y~~Lk~~G~~Fp~~~~~ 144 (148)
T 1mhq_A 104 KGRVIEILFSWTVWFPEDIK-IRDAYQMLKKQGIIKQDPKLP 144 (148)
T ss_dssp HHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTSSCSCCCC-
T ss_pred HHHHHHHHHHHHHHcCCCch-HHHHHHHHHHcCCCCCCCCCC
Confidence 34555666678765555676 9999999999994 5666554
No 33
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=70.35 E-value=12 Score=29.62 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=50.0
Q ss_pred hHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 131 SNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 131 ~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
.-|.|++.+|-....||....-+|..|..=+.-.|..+|-.+..- +...-|.+.+|+-|+|.|.
T Consensus 37 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~-nkr~TitsreIqtAvrLlL 100 (123)
T 2nqb_D 37 IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHY-NKRSTITSREIQTAVRLLL 100 (123)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcCCHHHHHHHHHHhC
Confidence 348999999877667888877778888777777888888777553 4566899999999998653
No 34
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=64.88 E-value=18 Score=28.76 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=50.6
Q ss_pred hHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 131 SNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 131 ~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
.-|.|++.+|-....||....-+|..|..=+.-.|..+|-.+..- +...-|.+.+|+-|+|.|.
T Consensus 40 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~-nkr~TitsreIqtAvrLlL 103 (126)
T 1tzy_B 40 IYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHY-NKRSTITSREIQTAVRLLL 103 (126)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHhC
Confidence 349999999877667888877888888887778888888777553 4567899999999998653
No 35
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=59.63 E-value=17 Score=30.36 Aligned_cols=68 Identities=21% Similarity=0.396 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHhcCCCCCCccHHHHHHHHHH----HHHHHHHHHHH-HHHHHhccCCCCCchHHHHH-------HHHHH
Q 028537 128 LQKSNMRRLLVSITGSQKISLPMTIVVCGIAK----MFVGELVETAR-MVMTERNESGPIRPCHIREA-------YRRLK 195 (207)
Q Consensus 128 F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAK----vFVGELVEeAr-~Vq~E~~e~gPLqP~HIREA-------~RRL~ 195 (207)
++...|.+|+..+. ++.+++++.|... .|.+-+-..|. .++++....||++...+.+| .|+|-
T Consensus 133 ld~~~iq~llr~v~-----~~~L~~ALKga~~e~~e~il~nmS~Raa~~l~ee~e~~gpvr~~dVe~Aq~~Iv~~~r~L~ 207 (216)
T 4fhr_B 133 LDDRSIQLVLREVD-----TRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLE 207 (216)
T ss_dssp SCHHHHHHHHTTSC-----HHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCC-----HHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45555555554432 3568899988654 44455555554 44556677899999988766 57777
Q ss_pred hcCCC
Q 028537 196 LEGKV 200 (207)
Q Consensus 196 ~~Gkl 200 (207)
.+|.|
T Consensus 208 ~~GeI 212 (216)
T 4fhr_B 208 EAGEI 212 (216)
T ss_dssp HTTSC
T ss_pred HCCCe
Confidence 88876
No 36
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=59.36 E-value=12 Score=29.78 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhccCCCCCc--hHHHHHHHHHHhcCCC
Q 028537 164 ELVETARMVMTERNESGPIRP--CHIREAYRRLKLEGKV 200 (207)
Q Consensus 164 ELVEeAr~Vq~E~~e~gPLqP--~HIREA~RRL~~~Gkl 200 (207)
++-++++.+...|.+.-+=.| ..|+++|+.|+.+|-.
T Consensus 111 ~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~ 149 (163)
T 1x5b_A 111 KVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGIT 149 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSTTHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHcCCC
Confidence 445566666678875433344 4799999999999944
No 37
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=53.21 E-value=5.5 Score=25.93 Aligned_cols=12 Identities=50% Similarity=0.636 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcC
Q 028537 187 IREAYRRLKLEG 198 (207)
Q Consensus 187 IREA~RRL~~~G 198 (207)
|.||+|||+..|
T Consensus 26 IkEAVrRlq~~~ 37 (39)
T 1gng_X 26 IKEAVRRLHSRR 37 (39)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHcc
Confidence 889999999876
No 38
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=52.16 E-value=58 Score=22.84 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 028537 132 NMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (207)
Q Consensus 132 ~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (207)
.|.+|+.+ .|-+.+++.++..+.-|+--|+.+|...|......- .+.-|....|+-|.+.
T Consensus 6 ~i~~iLk~-~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HA-grktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKE-LNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHA-RKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHH-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHH-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHh
Confidence 46777766 565689999999999999999999999999997754 4568999999988864
No 39
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=48.78 E-value=15 Score=29.57 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhcCCC
Q 028537 164 ELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKV 200 (207)
Q Consensus 164 ELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~Gkl 200 (207)
++-++++.+...|...=+=.| .|+++|+.|+.+|-.
T Consensus 114 ~Vk~kil~li~~W~~~f~~~~-~i~~~y~~Lk~~G~~ 149 (171)
T 1juq_A 114 KVKTKVIELLYSWTMALPEEA-KIKDAYHMLKRQGIV 149 (171)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHCCCC
Confidence 444566677778875544456 499999999999954
No 40
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=42.83 E-value=21 Score=28.21 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHhcCCC
Q 028537 165 LVETARMVMTERNESGPIRPCHIREAYRRLKLEGKV 200 (207)
Q Consensus 165 LVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~Gkl 200 (207)
+-++.+.+...|...=|=.|. |.++|+.|+.+|-+
T Consensus 113 Vk~kil~li~~W~~~f~~~p~-i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 113 VKNKILELLYSWTVGLPEEVK-IAEAYQMLKKQGIV 147 (149)
T ss_dssp HHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCch-HHHHHHHHHHCcCc
Confidence 334556666678654444565 99999999999965
No 41
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=42.58 E-value=57 Score=32.84 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=52.5
Q ss_pred hcC--CChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 028537 125 RSA--LQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (207)
Q Consensus 125 RS~--F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (207)
|+. |+=..|.|++..... .+|+....+-++++--.+..||.|.|=....... ..-|.|.||.-|++.
T Consensus 100 ~~~l~~pv~~~~~~l~~~~~-~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~-~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 100 RNPLSLPVEKIHPLLKEVLG-YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIR-HYEITKQDIKVAMCA 168 (1049)
T ss_dssp SSSCSSCHHHHHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCHHHHHHHHHH
T ss_pred cCCccccHHHHHHHhhcccc-cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcC-CceecCccccccccC
Confidence 444 565668998865554 5899999999999999999999999977655432 334999999999875
No 42
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=41.59 E-value=1.5e+02 Score=25.71 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 133 MRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 133 IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
++||+.. .|-..||..+...+.++.|.|+-+|+..|..+.+.. .+.-+.+..|.-|++|+.
T Consensus 167 ~~RlaRr-gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA-~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 167 DEEDGDK-GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHA-KRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp CCTTSCC-TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCSCCHHHHHHHHHHHH
T ss_pred HHHHhhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCcHHHHHHHHHhcC
Confidence 3344332 344568999999999999999999999999997754 456688999999999875
No 43
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=40.70 E-value=29 Score=30.28 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHhcCCCCCCccHHHHHHHHHH----HHHHHHHHHHH-HHHHHhccCCCCCchHHHHH-------HHHHH
Q 028537 128 LQKSNMRRLLVSITGSQKISLPMTIVVCGIAK----MFVGELVETAR-MVMTERNESGPIRPCHIREA-------YRRLK 195 (207)
Q Consensus 128 F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAK----vFVGELVEeAr-~Vq~E~~e~gPLqP~HIREA-------~RRL~ 195 (207)
++...|.+|+..|. ++.+++++.|-.. .|..-+-..|. .++++....||++...+.+| .|+|-
T Consensus 190 lddr~iq~llreV~-----~~~L~~ALKGa~~elrekil~nmS~Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~R~L~ 264 (279)
T 3pkr_A 190 LDNFAIREILKVAD-----KKDLSLALKTSTKDLTDKFLNNMSSRAAEQFVEEMQYLGAVKIKDVDVAQRKIIEIVQSLQ 264 (279)
T ss_dssp SCHHHHHHHHHHSC-----HHHHHHHTTTSCHHHHHHHHTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCC-----HHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33444555554432 3568888877554 45555555444 45666677999999998876 67888
Q ss_pred hcCCC
Q 028537 196 LEGKV 200 (207)
Q Consensus 196 ~~Gkl 200 (207)
.+|+|
T Consensus 265 e~GeI 269 (279)
T 3pkr_A 265 EKGVI 269 (279)
T ss_dssp HTTSS
T ss_pred HCCCE
Confidence 88876
No 44
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=38.93 E-value=52 Score=29.21 Aligned_cols=54 Identities=22% Similarity=0.482 Sum_probs=38.6
Q ss_pred CccHHHHHHHHH----HHHHHHHHHHHH-HHHHHhccCCCCCchHHHHH-------HHHHHhcCCC
Q 028537 147 SLPMTIVVCGIA----KMFVGELVETAR-MVMTERNESGPIRPCHIREA-------YRRLKLEGKV 200 (207)
Q Consensus 147 s~nvvIavaGlA----KvFVGELVEeAr-~Vq~E~~e~gPLqP~HIREA-------~RRL~~~Gkl 200 (207)
++.+++++.|-. ..|..-+-..|. .++++....||++...+.+| .|||-.+|+|
T Consensus 260 ~~~L~~ALKga~~elrekil~nmS~Raa~~l~eele~~GpVr~~dVE~Aq~~Iv~~~r~L~e~GeI 325 (329)
T 3hjl_A 260 KNTLMIALLGAPEDIKQKFLSNMSKRAAKLFLEDMEALGPVKKSEIEKAQRQVVNIIRKMIDEGKI 325 (329)
T ss_dssp HHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 456888998754 455555556554 45666777999999998876 5678888876
No 45
>2gsv_A Hypothetical protein YVFG; alpha-helical protein, structural genomics, PSI, protein structure initiative; 1.90A {Bacillus subtilis} SCOP: a.23.7.1 PDB: 2js1_A
Probab=37.18 E-value=1.1e+02 Score=22.20 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=33.8
Q ss_pred CCccHHHHHHHHHHHHHHHHHH-----HHHHHHHHhccCCCCCchHHHHHHHHHHhc
Q 028537 146 ISLPMTIVVCGIAKMFVGELVE-----TARMVMTERNESGPIRPCHIREAYRRLKLE 197 (207)
Q Consensus 146 Vs~nvvIavaGlAKvFVGELVE-----eAr~Vq~E~~e~gPLqP~HIREA~RRL~~~ 197 (207)
.+..-+.+|.+.-|+.||-||. .|.-+.. -.||.|||.+.+.+
T Consensus 22 ~~edKIhAmNaYYrsVvstlvqDqltKNAvvlkR---------iqHLdEAY~KVk~e 69 (80)
T 2gsv_A 22 QSEDKIHAMNSYYRSVVSTLVQDQLTKNAVVLKR---------IQHLDEAYNKVKRG 69 (80)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHCSSSCHHHHHHH---------HHHHHHHHHHHHHC
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---------HHHHHHHHHHHHhh
Confidence 3778899999999999999986 2333332 36999999999876
No 46
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=36.43 E-value=47 Score=24.90 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=34.9
Q ss_pred CChhHHHHHHHHhcCC--CCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 028537 128 LQKSNMRRLLVSITGS--QKISLPMTIVVCGIAKMFVGELVETARM 171 (207)
Q Consensus 128 F~K~~IKRLi~~vtgs--qsVs~nvvIavaGlAKvFVGELVEeAr~ 171 (207)
+++..|-||+.....+ .+|+...+.+++-+-++||-|-|-.|..
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e 47 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQ 47 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888988744332 2588899999999999999999987743
No 47
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=32.62 E-value=1.2e+02 Score=21.80 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=47.8
Q ss_pred CChhHHHHHHHHh----cCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 128 LQKSNMRRLLVSI----TGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 128 F~K~~IKRLi~~v----tgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
++|.-.-||+..+ .+...++...+.++.-.+-.|+-.|-|.|-..... ..+--|.|+.|+-|.|
T Consensus 4 i~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~H-AkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 4 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIH-AKRVTIMPKDIQLARR 71 (77)
T ss_dssp SCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccCcHhhHHHHHH
Confidence 4555555665555 34456788888899999999999999998766543 3567899999999975
No 48
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=31.54 E-value=50 Score=25.67 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCChhH-----HHHHHHHhcCCCCCCccHHH
Q 028537 116 QMNRYESFRRSALQKSN-----MRRLLVSITGSQKISLPMTI 152 (207)
Q Consensus 116 QldRYE~fRRS~F~K~~-----IKRLi~~vtgsqsVs~nvvI 152 (207)
=..||+.| |++.. +||-||+..+---|+.+.+|
T Consensus 11 F~aRy~~~----F~~~~iD~~e~rrglN~l~~~DlVP~P~ii 48 (109)
T 1v54_E 11 FDARWVTY----FNKPDIDAWELRKGMNTLVGYDLVPEPKII 48 (109)
T ss_dssp HHHHHHHH----HTCTTCCHHHHHHHHHHHTTSSBCCCHHHH
T ss_pred HHHHHHHH----cCCcCccHHHHHHHHHHHhccccCCCcHHH
Confidence 34699998 77776 89999999887667776444
No 49
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=30.83 E-value=1.8e+02 Score=22.60 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=42.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 145 KISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 145 sVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
.||..+...+.++.|.|+-+|+..|....+. ..+.-+...+|.-|++|.
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaeh-A~RKTVta~DV~~Alkr~ 112 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEH-AKRKTVTSLDVVYALKRQ 112 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCBCHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcCcHHHHHHHHHhC
Confidence 5788999999999999999999999999764 456788999999887764
No 50
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=30.70 E-value=59 Score=24.76 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=44.7
Q ss_pred HHHHHHHhcC--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 133 MRRLLVSITG--SQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 133 IKRLi~~vtg--sqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
|.||+....- +..+++.++.+|.-++--|+.+|-..|......- .+.-|.+..|+-|.||.
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HA-gRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHA-KRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCcCCHHHHHHHHHhC
Confidence 6777766532 2469999999999999999988888888776643 34457777777776653
No 51
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=30.38 E-value=13 Score=23.00 Aligned_cols=13 Identities=46% Similarity=0.539 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhcC
Q 028537 186 HIREAYRRLKLEG 198 (207)
Q Consensus 186 HIREA~RRL~~~G 198 (207)
-|+||+|||+..+
T Consensus 16 likeAvrrl~sr~ 28 (30)
T 4afj_X 16 LIKEAVRRLHSRR 28 (30)
T ss_dssp HHHHHHHHTCC--
T ss_pred hHHHHHHHHHHhc
Confidence 3889999988654
No 52
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=28.41 E-value=1.1e+02 Score=24.44 Aligned_cols=58 Identities=26% Similarity=0.379 Sum_probs=35.5
Q ss_pred HHHHhcCCChhHHHHHHHHhcCCCCC--Cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 121 ESFRRSALQKSNMRRLLVSITGSQKI--SL---PMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 121 E~fRRS~F~K~~IKRLi~~vtgsqsV--s~---nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
..||.+. +...|++|...+.-+..+ .. .-+.+|+|+-|.|+-+| ..||-|..+.+.|.
T Consensus 55 GIfR~~G-~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~lLK~flreL-------------PePLl~~~l~~~~~ 117 (214)
T 3byi_A 55 GIYRVSG-NLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFREL-------------PEPLFPYSFFEQFV 117 (214)
T ss_dssp TTTTSCC-CHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHHHHHHHHHHS-------------SSCSSCHHHHHHHH
T ss_pred CccccCC-CHHHHHHHHHHHhcCCCCCCCcccccchHHHHHHHHHHHHhC-------------CCCCCCHHHHHHHH
Confidence 5788887 466677776554322222 11 13577899999999876 34666655554443
No 53
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=28.16 E-value=94 Score=24.88 Aligned_cols=39 Identities=10% Similarity=0.202 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 157 IAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 157 lAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
=+|-||.+|+...|.+..+.-...++-+..|+..+..|+
T Consensus 83 eak~Fv~kli~~~r~l~~~~~~G~k~~~~~lK~~~~~yk 121 (140)
T 2w9y_A 83 AAVEYAKKLIHMVTTTLCSLTVGKPIDDADAKRLHQEFQ 121 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 378999999999999988876677888888887776665
No 54
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=26.16 E-value=49 Score=30.71 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHHhcCCChhHHHHHHHHh
Q 028537 110 NQFTEDQMNRYESFRRSALQKSNMRRLLVSI 140 (207)
Q Consensus 110 ~~fteEQldRYE~fRRS~F~K~~IKRLi~~v 140 (207)
..||+++..||..||+..|...++..+++.+
T Consensus 417 ~~l~~~e~~~w~~~~~~~l~~~~~~~~~~~~ 447 (482)
T 2qxf_A 417 GTLDYAEQQRWLEHRRQVFTPEFLQGYADEL 447 (482)
T ss_dssp GGCCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5799999999999999999988777775544
No 55
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=25.67 E-value=1.5e+02 Score=21.76 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=44.6
Q ss_pred HHHHHHHhcCC--CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 028537 133 MRRLLVSITGS--QKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (207)
Q Consensus 133 IKRLi~~vtgs--qsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (207)
|-||+...+.. -.+|+.++.++.-++--|+.+|-..+...... ..+.-|.+..|.-|.||
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~H-AgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARH-AGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHHHh
Confidence 56677777432 35888889889888888888887777666554 45677889999888776
No 56
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=25.33 E-value=49 Score=25.43 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhccCCCCCch--HHHHHHHHHHhcCCCC
Q 028537 165 LVETARMVMTERNESGPIRPC--HIREAYRRLKLEGKVP 201 (207)
Q Consensus 165 LVEeAr~Vq~E~~e~gPLqP~--HIREA~RRL~~~GklP 201 (207)
+-++.+.+...|.+.=+=.|. .|.++|+.|+.+|-.+
T Consensus 101 Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~F 139 (140)
T 3ldz_A 101 VCEKLKALMVEWTDEFKNDPQLSLISAMIKNLKEQGVTF 139 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHccCcC
Confidence 344556666678643333343 6999999999999543
No 57
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=24.97 E-value=76 Score=27.62 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=24.7
Q ss_pred HHHHHhcCCChh----HHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 028537 120 YESFRRSALQKS----NMRRLLVSITGSQKISLPMTIVVCGIAKMFV 162 (207)
Q Consensus 120 YE~fRRS~F~K~----~IKRLi~~vtgsqsVs~nvvIavaGlAKvFV 162 (207)
|+.|-+.-.+|. +|+||.++|.|+..--+.---.+-.+++||+
T Consensus 138 y~dyv~~~~~~p~~~~kirRla~svyg~p~Q~papeef~~ava~v~~ 184 (242)
T 3zed_D 138 YEDYVRKPITRPTDMDKIRRLANSVYGLPHQEPAPDDFYQAVVEVFA 184 (242)
T ss_pred HHHhhccccCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 333555544444 7999999999874311112233455667775
No 58
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.76 E-value=81 Score=26.01 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhccCCCCCc--hHHHHHHHHHHhcCCCC
Q 028537 164 ELVETARMVMTERNESGPIRP--CHIREAYRRLKLEGKVP 201 (207)
Q Consensus 164 ELVEeAr~Vq~E~~e~gPLqP--~HIREA~RRL~~~GklP 201 (207)
++-++++.+...|...=+=.| ..|.++|+.|+.+|-.+
T Consensus 104 ~Vk~kil~li~~W~~~f~~~~~l~~i~~~Y~~Lk~~G~~F 143 (226)
T 3zyq_A 104 NVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVF 143 (226)
T ss_dssp HHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCCc
Confidence 345667777778864322233 36999999999999654
No 59
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=24.61 E-value=1.2e+02 Score=24.92 Aligned_cols=44 Identities=30% Similarity=0.369 Sum_probs=28.5
Q ss_pred HHHHhcCCChhHHHHHHHHhcCCCCCCc----cHHHHHHHHHHHHHHHH
Q 028537 121 ESFRRSALQKSNMRRLLVSITGSQKISL----PMTIVVCGIAKMFVGEL 165 (207)
Q Consensus 121 E~fRRS~F~K~~IKRLi~~vtgsqsVs~----nvvIavaGlAKvFVGEL 165 (207)
..||.+. +...|++|...+.-+..+.- .-+.+|+++-|.|+-+|
T Consensus 88 GIFR~sG-~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~lLK~fLReL 135 (246)
T 3fk2_A 88 GIYRVSG-NKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSEL 135 (246)
T ss_dssp TTTTSCC-CHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHHHHHHHHHS
T ss_pred CeeEeCC-cHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHHhC
Confidence 5788877 46678887655432222221 13567899999999776
No 60
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=24.38 E-value=1.3e+02 Score=19.41 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 028537 133 MRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMV 172 (207)
Q Consensus 133 IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~V 172 (207)
|+.+|=..=..+.+.+..+.+|--+-.-||-+|+-+|.+|
T Consensus 6 i~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~v 45 (45)
T 1bh9_A 6 LRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45 (45)
T ss_dssp HHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7777644322344555677788888888888888888654
No 61
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=24.20 E-value=93 Score=24.51 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhccCCCC--CchHHHHHHHHHHhcC
Q 028537 164 ELVETARMVMTERNESGPI--RPCHIREAYRRLKLEG 198 (207)
Q Consensus 164 ELVEeAr~Vq~E~~e~gPL--qP~HIREA~RRL~~~G 198 (207)
++-++.+.+...|...=+= .=..|.++|+.|+.+|
T Consensus 116 ~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 116 DIQNRILNFIKTWSQGFPGGVDVSEVKEVYLDLVKKG 152 (152)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHCc
Confidence 3446777888889653222 3478999999999988
No 62
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=23.67 E-value=1e+02 Score=24.24 Aligned_cols=37 Identities=16% Similarity=0.449 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHH---HHHHHhcCCChhHHHHHHH
Q 028537 99 PAKMAKMQAILNQFTEDQMNR---YESFRRSALQKSNMRRLLV 138 (207)
Q Consensus 99 ~e~~~km~~Ll~~fteEQldR---YE~fRRS~F~K~~IKRLi~ 138 (207)
+.+..++.+++.+||+++.+. -+.+.. +-+-++||..
T Consensus 57 e~~lkr~eaII~SMT~~Er~n~~~P~ii~~---~~SRk~RIA~ 96 (129)
T 1mfq_C 57 MARLKKLMTIMDSMNDQELDSTDGAKVFSK---QPGRIQRVAR 96 (129)
T ss_dssp HHHHHHHHHHHTTSCHHHHTCTTHHHHHHH---CTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHhcCCCcccccC---ChHHHHHHHc
Confidence 445688999999999999998 777732 3355677753
No 63
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=23.53 E-value=79 Score=25.84 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCChhH-----HHHHHHHhcCCCCCCccHHH
Q 028537 117 MNRYESFRRSALQKSN-----MRRLLVSITGSQKISLPMTI 152 (207)
Q Consensus 117 ldRYE~fRRS~F~K~~-----IKRLi~~vtgsqsVs~nvvI 152 (207)
..||+.| |++.. ++|-||+..+.--|+.+-+|
T Consensus 55 daRy~~~----F~~~~iD~wElrrglN~l~~~DlVPeP~Ii 91 (152)
T 2y69_E 55 DARWVTY----FNKPDIDAWELRKGMNTLVGYDLVPEPKII 91 (152)
T ss_dssp HHHHHHH----HTCTTCCHHHHHHHHHHHTTSSBCCCHHHH
T ss_pred HHHHHHH----cCCcCccHHHHHHHHHHHhccccCCCcHHH
Confidence 3588888 77776 89999999887677776544
No 64
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=23.02 E-value=81 Score=25.12 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=27.8
Q ss_pred HHHHhcCCChhHHHHHHHHhcCCCCCCc----cHHHHHHHHHHHHHHHH
Q 028537 121 ESFRRSALQKSNMRRLLVSITGSQKISL----PMTIVVCGIAKMFVGEL 165 (207)
Q Consensus 121 E~fRRS~F~K~~IKRLi~~vtgsqsVs~----nvvIavaGlAKvFVGEL 165 (207)
..||.+.- +..|++|...+.-+..+.- .-+.+|+++-|.|+-+|
T Consensus 47 GIfR~~g~-~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK~flreL 94 (209)
T 2ee4_A 47 GLYRVSGN-KTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADL 94 (209)
T ss_dssp TTTTSCCC-HHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHHHHHHHS
T ss_pred CccccCCC-HHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHhC
Confidence 56888874 5667777554432222221 12567899999999876
No 65
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=22.21 E-value=2.3e+02 Score=20.53 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=48.0
Q ss_pred CChhHHHHHHHHhc------CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 028537 128 LQKSNMRRLLVSIT------GSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (207)
Q Consensus 128 F~K~~IKRLi~~vt------gsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (207)
++|.-.-||+..+. ....++...+.++.-.+-.|+-.|-|.|-..... ..+--|.|+.|+-|.|-
T Consensus 4 I~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiH-AkRvTi~~kDiqLa~ri 74 (82)
T 3nqj_A 4 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLH-AGRVTLFPKDVQLARRI 74 (82)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccCcHHHHHHHHHH
Confidence 35555556655554 2346778889999999999999999988766443 35678999999998664
No 66
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=21.99 E-value=55 Score=25.64 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhccCCCCCc--hHHHHHHHHHHhcCCCC
Q 028537 164 ELVETARMVMTERNESGPIRP--CHIREAYRRLKLEGKVP 201 (207)
Q Consensus 164 ELVEeAr~Vq~E~~e~gPLqP--~HIREA~RRL~~~GklP 201 (207)
++-++++.+...|...=+=.| ..|+++|+.|+.+|-.+
T Consensus 116 ~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y~~Lk~~G~~F 155 (157)
T 1elk_A 116 IVHDKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEF 155 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC
Confidence 345667777778864211122 47999999999999543
No 67
>1dum_A Magainin 2; antibiotic, dimer, amphipathic helix, membrane, vesicle, bilayer, antimicrobial protein; NMR {Synthetic} SCOP: j.4.1.1 PDB: 2mag_A
Probab=21.72 E-value=44 Score=19.70 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q 028537 155 CGIAKMFVGELVE 167 (207)
Q Consensus 155 aGlAKvFVGELVE 167 (207)
.-|.|-|||||..
T Consensus 10 kkfgkawvgeimn 22 (26)
T 1dum_A 10 KKFGKAWVGEIMN 22 (26)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHh
Confidence 4588999999863
No 68
>1y14_A B32, RPB4, DNA-directed RNA polymerase II 32 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: a.60.8.2
Probab=20.95 E-value=2.9e+02 Score=23.00 Aligned_cols=90 Identities=8% Similarity=0.158 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHh----cCCHHHHHHHHHHHhc-CC-ChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 028537 98 DPAKMAKMQAILN----QFTEDQMNRYESFRRS-AL-QKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARM 171 (207)
Q Consensus 98 d~e~~~km~~Ll~----~fteEQldRYE~fRRS-~F-~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~ 171 (207)
.+.+...+..||. +|+..++.-|+..++- +| ++..++.|+.-+.. ..+..-.+..|+-| ..+=+++|+.
T Consensus 85 ~~~~i~~v~~lle~~~~~ls~v~~KTLeYl~rFsk~kn~Esa~elre~L~~-~kL~efE~aqLaNL----~PeTadEara 159 (187)
T 1y14_A 85 REKELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKS-TGLHPFEVAQLGSL----ACDTADEAKT 159 (187)
T ss_dssp HHHHHHHHHHHHHHHSCSCCHHHHHHHHHHHHHCSCCSHHHHHHHHHHHHT-TTCCHHHHHHHHHS----CCSSHHHHHH
T ss_pred hhhhHHHHHHHHhhccccccHHHHHHHHHHHHccCCCCHHHHHHHHHHHHh-cCCCHHHHHHcCcC----CCCCHHHHHH
Confidence 5556677888884 8999999888877664 66 78888887654332 12333222222111 1112455555
Q ss_pred HHHHhccCCCCCchHHHHHHHHH
Q 028537 172 VMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 172 Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
+-..+.. .|.+..|.+-+.-+
T Consensus 160 LIpSle~--rlsdEeLeeILd~L 180 (187)
T 1y14_A 160 LIPSLNN--KISDDELERILKEL 180 (187)
T ss_dssp HSGGGTT--TSCHHHHHHHHHHH
T ss_pred HHHhhcc--CCCHHHHHHHHHHH
Confidence 5544432 24555555544433
No 69
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=20.86 E-value=55 Score=23.50 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=11.2
Q ss_pred ccCCCCCchHHHHHHHHH
Q 028537 177 NESGPIRPCHIREAYRRL 194 (207)
Q Consensus 177 ~e~gPLqP~HIREA~RRL 194 (207)
..+|-|.+..|+.+++.+
T Consensus 95 d~~G~I~~~El~~~l~~~ 112 (148)
T 2lmt_A 95 DGDGFISPAELRFVMINL 112 (148)
T ss_dssp SCSSEECHHHHHHHHHHH
T ss_pred CCcCcCcHHHHHHHHHHc
Confidence 345666666666666554
No 70
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=20.74 E-value=92 Score=22.07 Aligned_cols=40 Identities=13% Similarity=0.322 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCHHHHHHH--HHHHhcCCChhHHHHHHHHhcC
Q 028537 103 AKMQAILNQFTEDQMNRY--ESFRRSALQKSNMRRLLVSITG 142 (207)
Q Consensus 103 ~km~~Ll~~fteEQldRY--E~fRRS~F~K~~IKRLi~~vtg 142 (207)
+.++.-+.+||.||...| +.||+.=+....+|.||.+..|
T Consensus 16 ~~~~~qv~~ls~EQaqe~Lve~~rQmMikeN~~k~liK~~w~ 57 (65)
T 1ojh_A 16 RSFATQVQNMSHDQAKDFLVKLYEQMVVREATYQELLKHQWG 57 (65)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 567778999999999998 7899999989999999988665
No 71
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=20.52 E-value=40 Score=25.10 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=15.6
Q ss_pred CCchHHHHHHHHHHhcCCC
Q 028537 182 IRPCHIREAYRRLKLEGKV 200 (207)
Q Consensus 182 LqP~HIREA~RRL~~~Gkl 200 (207)
+-+.-+|+||++|..+|-|
T Consensus 50 VSr~tVReAl~~L~~eGlv 68 (134)
T 4ham_A 50 VNPNTVSKAYQELERQEVI 68 (134)
T ss_dssp CCHHHHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHHHHCCcE
Confidence 3455699999999999976
Done!