Query 028537
Match_columns 207
No_of_seqs 124 out of 211
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 21:50:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028537.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028537hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bh9b_ a.22.1.3 (B:) TAF(II)2 100.0 2.4E-44 1.8E-48 271.8 12.1 89 112-201 1-89 (89)
2 d1htaa_ a.22.1.2 (A:) Archaeal 98.4 3.7E-07 2.7E-11 62.5 7.5 67 126-194 2-68 (68)
3 d1jfia_ a.22.1.3 (A:) Negative 98.1 1.8E-06 1.3E-10 59.0 5.9 65 126-191 1-65 (66)
4 d1jfib_ a.22.1.3 (B:) Negative 97.7 6.5E-05 4.7E-09 57.7 8.6 68 127-195 4-71 (135)
5 d1n1jb_ a.22.1.3 (B:) Nuclear 97.7 3.6E-05 2.6E-09 53.5 6.2 66 128-194 1-66 (78)
6 d1n1ja_ a.22.1.3 (A:) Nuclear 97.6 9.5E-05 6.9E-09 52.5 7.2 67 128-195 3-70 (87)
7 d1f1ea_ a.22.1.2 (A:) Archaeal 97.6 6.9E-05 5E-09 58.4 6.6 72 125-198 77-148 (151)
8 d1ku5a_ a.22.1.2 (A:) Archaeal 97.4 0.00013 9.1E-09 49.3 6.0 64 127-192 2-65 (66)
9 d2bykb1 a.22.1.3 (B:11-99) Chr 97.3 0.00036 2.6E-08 49.7 7.1 66 129-195 1-67 (89)
10 d1f1ea_ a.22.1.2 (A:) Archaeal 96.7 0.0015 1.1E-07 50.6 6.4 67 128-195 2-68 (151)
11 d2huec1 a.22.1.1 (C:20-101) Hi 95.3 0.014 1E-06 41.0 5.3 66 127-194 9-74 (82)
12 d1q9ca_ a.22.1.3 (A:) Histone 94.7 0.047 3.4E-06 43.4 7.7 64 127-192 99-162 (172)
13 d2byka1 a.22.1.3 (A:29-100) Ch 93.5 0.056 4.1E-06 36.8 5.0 50 145-194 9-58 (72)
14 d1h3ob_ a.22.1.3 (B:) TAF(II)- 93.4 0.19 1.4E-05 34.9 7.8 66 127-193 3-68 (74)
15 d1u35c1 a.22.1.1 (C:814-919) m 89.8 0.52 3.8E-05 34.5 7.1 66 127-193 11-76 (106)
16 d1tafb_ a.22.1.3 (B:) TAF(II)6 89.5 0.81 5.9E-05 31.5 7.5 66 125-192 4-69 (70)
17 d1f66c_ a.22.1.1 (C:) Histone 89.4 0.6 4.4E-05 33.9 7.1 66 127-193 11-77 (103)
18 d1tzya_ a.22.1.1 (A:) Histone 88.5 0.65 4.8E-05 34.0 6.8 65 127-192 12-76 (106)
19 d1qc7a_ a.118.14.1 (A:) FliG { 73.8 1.4 0.0001 31.0 3.6 69 127-200 9-89 (101)
20 d1tzyb_ a.22.1.1 (B:) Histone 61.0 12 0.00089 26.2 6.5 65 133-199 9-73 (92)
21 d1rrza_ a.7.10.1 (A:) Glycogen 47.3 7.3 0.00053 26.1 3.1 23 105-127 30-56 (66)
22 d1w5sa2 c.37.1.20 (A:7-293) CD 45.4 48 0.0035 23.7 8.6 28 164-192 258-285 (287)
23 d1fnna2 c.37.1.20 (A:1-276) CD 38.7 16 0.0012 26.3 4.2 29 166-195 246-274 (276)
24 d1juqa_ a.118.9.2 (A:) ADP-rib 33.2 23 0.0017 25.8 4.3 37 168-205 107-144 (151)
25 d1tzyc_ a.22.1.1 (C:) Histone 29.0 71 0.0052 22.0 6.2 65 127-192 21-89 (95)
26 d1dula_ a.36.1.1 (A:) Signal s 26.3 31 0.0023 22.8 3.6 33 101-138 11-43 (69)
27 d1v54e_ a.118.11.1 (E:) Cytoch 25.9 27 0.0019 25.2 3.4 32 117-152 8-44 (105)
28 d1fc2c_ a.8.1.1 (C:) Immunoglo 23.6 19 0.0014 22.3 1.9 35 116-150 6-40 (44)
29 d1mhqa_ a.118.9.2 (A:) ADP-rib 23.5 33 0.0024 24.7 3.6 33 168-201 106-138 (143)
30 d2hs5a1 a.4.5.6 (A:25-93) Puta 23.2 16 0.0012 23.2 1.5 19 182-200 37-55 (69)
31 d1lkvx_ a.118.14.1 (X:) FliG { 22.5 56 0.0041 23.5 4.8 54 147-200 144-209 (213)
32 d1elka_ a.118.9.2 (A:) Tom1 pr 20.9 50 0.0036 23.9 4.2 35 165-200 113-150 (153)
33 d1f6va_ a.49.1.1 (A:) C-termin 20.5 18 0.0013 25.5 1.4 22 176-197 61-82 (91)
34 d1bh9a_ a.22.1.3 (A:) TAF(II)1 20.2 84 0.0061 18.9 4.5 41 132-172 5-45 (45)
No 1
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.4e-44 Score=271.81 Aligned_cols=89 Identities=49% Similarity=0.823 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHhcCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHH
Q 028537 112 FTEDQMNRYESFRRSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAY 191 (207)
Q Consensus 112 fteEQldRYE~fRRS~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~ 191 (207)
||+|||+|||+||||+|+|++|||||++++| |+||+|++|+|+||||||||||||+|++||++|++++||||+||||||
T Consensus 1 Fs~eQ~~RyE~fRRs~~~K~~vkrl~~~~~g-~sv~~~v~i~v~giaKvFvGEiVE~A~~V~~~~~e~~PL~P~HireA~ 79 (89)
T d1bh9b_ 1 FSEEQLNRYEMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAV 79 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 8999999999999999999999999999996 699999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCC
Q 028537 192 RRLKLEGKVP 201 (207)
Q Consensus 192 RRL~~~GklP 201 (207)
|||+.+|++|
T Consensus 80 rrl~~~g~~p 89 (89)
T d1bh9b_ 80 RRLKSKGQIP 89 (89)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHcCCCC
Confidence 9999999998
No 2
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=98.43 E-value=3.7e-07 Score=62.50 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=60.2
Q ss_pred cCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 126 S~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
|.||++.||||+.+. |..+|+.++..+++..+++||.+|+..|.+++... .+.-|+|.||..|++||
T Consensus 2 aeLP~a~I~ri~k~~-~~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~-kRkTi~~~DV~~Alk~~ 68 (68)
T d1htaa_ 2 GELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHA-GRKTIKAEDIELARKMF 68 (68)
T ss_dssp CCSCHHHHHHHHHHT-TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSCCHHHHHHHHHTC
T ss_pred CcCcHHHHHHHHHHC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcCCHHHHHHHHHhC
Confidence 459999999999986 44579999999999999999999999999998854 68899999999999986
No 3
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.15 E-value=1.8e-06 Score=58.98 Aligned_cols=65 Identities=11% Similarity=0.342 Sum_probs=55.3
Q ss_pred cCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHH
Q 028537 126 SALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAY 191 (207)
Q Consensus 126 S~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~ 191 (207)
+.||-+.|||||..-.....||.+...+|+..+.+||.+|++.|-.+.... .+.-|+|.||..|+
T Consensus 1 a~fP~srVkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~-krktI~~~dl~~ai 65 (66)
T d1jfia_ 1 ARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR-NAKTMTTSHLKQCI 65 (66)
T ss_dssp CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC----CBCHHHHHTTC
T ss_pred CCCChHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcCCHHHHHHHh
Confidence 579999999999976666689999999999999999999999999997754 46689999998764
No 4
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.72 E-value=6.5e-05 Score=57.70 Aligned_cols=68 Identities=13% Similarity=0.257 Sum_probs=62.0
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
+||++.|+|||........|+....++|+-.+-+||..|...|-.++... .+.-|+|.||-.|+..|-
T Consensus 4 ~LP~a~I~kI~K~~~~~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~-~RkTi~~~Dv~~Al~~~~ 71 (135)
T d1jfib_ 4 TIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKS-EKKTISPEHVIQALESLG 71 (135)
T ss_dssp CCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHhhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccHHHHHHHHHHcC
Confidence 69999999999998877789999999999999999999999999997765 466899999999999875
No 5
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.70 E-value=3.6e-05 Score=53.52 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=56.8
Q ss_pred CChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 128 LQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 128 F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
||.+.|||||+.--....++.....+|+-.+-+||..|+++|.+++... .+.=|+|.||-.|++..
T Consensus 1 LP~srVkrImK~~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~-~rkti~~~dl~~av~~~ 66 (78)
T d1n1jb_ 1 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDN-KRRTLQRNDIAMAITKF 66 (78)
T ss_dssp CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHTTC
T ss_pred CCHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHhcC
Confidence 6889999999865445578999999999999999999999999997754 46689999999998754
No 6
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.59 E-value=9.5e-05 Score=52.55 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=58.4
Q ss_pred CChhHHHHHHHHhc-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 128 LQKSNMRRLLVSIT-GSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 128 F~K~~IKRLi~~vt-gsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
||++.|+|||.+.. +...||.+...+|+-.+-+||..|..+|-.+.... .+.=|.|.||-.|+..+.
T Consensus 3 LP~a~v~ri~K~~~p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~-~rKTI~~~dv~~Al~~~~ 70 (87)
T d1n1ja_ 3 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQE-KRKTINGEDILFAMSTLG 70 (87)
T ss_dssp CCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHHHTT
T ss_pred CcHhHHHHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHcC
Confidence 89999999998765 44579999999999999999999999999987654 466899999999998764
No 7
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=97.56 E-value=6.9e-05 Score=58.36 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=63.5
Q ss_pred hcCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhcC
Q 028537 125 RSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEG 198 (207)
Q Consensus 125 RS~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~G 198 (207)
-.-|+++.||||+... |...++.....+|+..+..|+.+|++.|-.++... .+.-|+|.||..|+++..-+|
T Consensus 77 ~~~fp~a~IkRi~k~~-g~~ris~dA~~~l~~~~E~fi~~l~~~A~~~a~~~-kRkTI~~~DI~~Av~~~~~~~ 148 (151)
T d1f1ea_ 77 GELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADED-GRKTVQGEDVEKAITYSMPKG 148 (151)
T ss_dssp SCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHHHSGGG
T ss_pred cCccCHHHHHHHHHcC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcCCHHHHHHHHHHcCCCc
Confidence 4469999999999874 55579999999999999999999999999998876 466999999999999988664
No 8
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=97.45 E-value=0.00013 Score=49.35 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=56.5
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
-||++.|||||.... .-+|+.+...+|...+++||..|...|-.+.... .+.=|++.||..|++
T Consensus 2 ~LP~a~I~rI~k~~~-~~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~-~RKTI~~~Dv~~Al~ 65 (66)
T d1ku5a_ 2 ELPIAPVDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHA-GRKTVKVEDIKLAIK 65 (66)
T ss_dssp CSCHHHHHHHHHHTT-CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCSEECHHHHHHHHT
T ss_pred CCCHHHHHHHHHhCc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCHHHHHHHHh
Confidence 589999999999864 3479999999999999999999999999998765 477899999999874
No 9
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=97.28 E-value=0.00036 Score=49.69 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=56.4
Q ss_pred ChhHHHHHHHHhc-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 129 QKSNMRRLLVSIT-GSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 129 ~K~~IKRLi~~vt-gsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
|++.|+|||.+.. .+..|+.+...+|+-.+-+||..|.++|..++... .+.=|+|.||..|+..|-
T Consensus 1 P~a~i~ri~K~~~p~~~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~-~rKtI~~~dv~~Al~~~~ 67 (89)
T d2bykb1 1 PNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQ-NHKTITAKDILQTLTELD 67 (89)
T ss_dssp CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSCCHHHHHHHHHHTT
T ss_pred CccHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCccCHHHHHHHHHHCC
Confidence 5788999998665 34569999999999999999999999999986654 467899999999998764
No 10
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=96.70 E-value=0.0015 Score=50.56 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=60.9
Q ss_pred CChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 128 LQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 128 F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
||++.|.|||..+.|...||.+...+|..+.+.|+..|..+|-.++..- .+.=|.|+||..|.+.+.
T Consensus 2 lP~a~I~rilk~~~~~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~-~rKTi~~edi~~a~~~~~ 68 (151)
T d1f1ea_ 2 LPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDAS-GKKTLMEEHLKALADVLM 68 (151)
T ss_dssp CCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCSEECHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcCCHHHHHHHHHhcc
Confidence 8999999999988888889999999999999999999999999998865 456799999999998776
No 11
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=95.26 E-value=0.014 Score=41.00 Aligned_cols=66 Identities=20% Similarity=0.284 Sum_probs=57.2
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
.++|+.||||+.+ .|-..||..+.-.++.+.+.|+-+|+..|...+.. ..+.-|.+..|.-|++|+
T Consensus 9 gI~k~~i~Riar~-~Gv~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~h-akRKTvt~~DV~~Alkr~ 74 (82)
T d2huec1 9 GITKPAIRRLARR-GGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEH-AKRKTVTAMDVVYALKRQ 74 (82)
T ss_dssp SSCHHHHHHHHHH-TTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHTTTT
T ss_pred CcCHHHHHHHHHH-cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCcCCHHHHHHHHHhc
Confidence 6899999999887 46557999999999999999999999999999864 456678899999998865
No 12
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.75 E-value=0.047 Score=43.45 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=55.4
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
.||-+.|.|++.... ...|+....+.++++--.+..||.|.|-.....-+. .-|.|.||..|.|
T Consensus 99 ~fPV~rv~rlLk~~~-a~RVs~~A~vyLaavLEyl~aeILelAgn~a~~~kr-krItp~dI~lAi~ 162 (172)
T d1q9ca_ 99 SLPVEKIHPLLKEVL-GYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRH-YEITKQDIKVAMC 162 (172)
T ss_dssp CCCHHHHHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-SBCCHHHHHHHHH
T ss_pred eecHHHHHHHHHhcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ceecHHHHHHHHh
Confidence 577788999998874 568999999999999999999999999988766543 4599999999987
No 13
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=93.47 E-value=0.056 Score=36.83 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=42.0
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 028537 145 KISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRL 194 (207)
Q Consensus 145 sVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL 194 (207)
.||+...++|+--+=+||.+|+++|.....+.+.+.=|++.||.+|+.+-
T Consensus 9 ~is~ea~~lvskAtElFi~~L~~~a~~~a~~~~~~ktl~~~dl~~aV~~~ 58 (72)
T d2byka1 9 LITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 58 (72)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccHHHHHHHHccC
Confidence 47889999999999999999999998766555455679999999998753
No 14
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.37 E-value=0.19 Score=34.93 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=58.5
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (207)
-|+|.++..|++++.++..+.+.+-.++.-||=-||-.+++.|..+.+.|+ +..|.++.|.--+.|
T Consensus 3 il~K~~L~eLv~~idp~~~ld~~vee~ll~iADdFV~~V~~~ac~lAKhR~-s~~le~kDvql~LeR 68 (74)
T d1h3ob_ 3 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRK-SSTLEVKDVQLHLER 68 (74)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCcHHHHHHHHHh
Confidence 378999999999999988899999999999999999999999999998884 567888887766665
No 15
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.83 E-value=0.52 Score=34.55 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=54.5
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (207)
.|+=+.|.|++..-.-...|+....+-++++--.+..||.|.|-...... ...-|.|+||.-|.|-
T Consensus 11 ~FpV~ri~r~Lk~~~~~~rv~~~apVylaAVLEYL~aEILELAgn~a~~~-k~~rItprhi~lairn 76 (106)
T d1u35c1 11 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDN-KKGRVTPRHILLAVAN 76 (106)
T ss_dssp SSCHHHHHHHHHHHSTTSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHHH
T ss_pred ccCHHHHHHHHhCCCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHc-CCCeeecchhhhcccC
Confidence 46667788998775555678999999999999999999999998776553 4678999999999864
No 16
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=89.53 E-value=0.81 Score=31.46 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=55.7
Q ss_pred hcCCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 125 RSALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 125 RS~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
.|.|++..||-+..+ .|-..+++.++-.++-=.-.=|.+|+++|.+.|... .+.-|...+|..|+|
T Consensus 4 ~S~~~~esik~iAeS-~Gi~~l~de~a~~LA~DveYRl~eiiQeA~KFMrhs-kR~~Ltt~Did~ALk 69 (70)
T d1tafb_ 4 GSSISAESMKVIAES-IGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHA-KRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHH-TTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcCcHHHHHHHHc
Confidence 368999999998665 555568999999999888899999999999999865 456899999998875
No 17
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}
Probab=89.37 E-value=0.6 Score=33.87 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=52.5
Q ss_pred CCChhHHHHHHHHhcCCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQ-KISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRR 193 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsq-sVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RR 193 (207)
.|+=..|.|++....-++ .|+....+-++++--.+..||.|.|-...... ...-|.|+||.-|.+-
T Consensus 11 ~FpVgrv~r~L~~~~~~~~rv~~~A~VyLaAvLEYL~aEILelagn~a~~~-~~~rItpr~l~lai~n 77 (103)
T d1f66c_ 11 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL-KVKRITPRHLQLAIRG 77 (103)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCSEECHHHHHHHHHH
T ss_pred ccChHHHHHHHhccCccceecCCCceeeHHHHHHHHHHHHHHHhhhhhccC-CCCeeechhhhccccC
Confidence 466666888887654444 48999999999999999999999998876543 4567999999998873
No 18
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=88.55 E-value=0.65 Score=34.01 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=52.6
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
.|+=+.|-|++..-.-...|+....+-++++--.+..||.|.|-...... ...-|.|+||.-|.|
T Consensus 12 ~FpV~rv~r~Lk~~~~~~rv~~~apVylaAVLEYLtaEiLELAgn~a~~~-k~~rItPrhi~lAir 76 (106)
T d1tzya_ 12 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDN-KKTRIIPRHLQLAIR 76 (106)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSEECHHHHHHHHH
T ss_pred cCChHHHHHHHHcCccccccCCCchHHHHHHHHHHHHHHHHHhhHHHHhc-CCceecchhhhhccc
Confidence 35667788998875545678999999999999999999999997776443 466899999998775
No 19
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=73.76 E-value=1.4 Score=31.05 Aligned_cols=69 Identities=20% Similarity=0.386 Sum_probs=46.3
Q ss_pred CCChhHHHHHHHHhcCCCCCCccHHHHHHHHHHH----HHHHHHHHH-HHHHHHhccCCCCCchHHHHH-------HHHH
Q 028537 127 ALQKSNMRRLLVSITGSQKISLPMTIVVCGIAKM----FVGELVETA-RMVMTERNESGPIRPCHIREA-------YRRL 194 (207)
Q Consensus 127 ~F~K~~IKRLi~~vtgsqsVs~nvvIavaGlAKv----FVGELVEeA-r~Vq~E~~e~gPLqP~HIREA-------~RRL 194 (207)
+++...+.+|+..+. .+.+++++.|...- |++-+-+.+ ..+.++....||+.+..+.+| .|+|
T Consensus 9 ~l~~~~l~~llr~i~-----~~~l~~ALkga~~~~~~~il~nms~R~~~~l~ee~~~~g~v~~~dve~Aq~~Iv~~~r~l 83 (101)
T d1qc7a_ 9 KLDDRSIQLVLREVD-----TRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRL 83 (101)
T ss_dssp GBCHHHHHHHHTSSC-----HHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCC-----HHHHHHHHcCCCHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 466677777765432 34678888776554 444444444 455666777899999998876 5677
Q ss_pred HhcCCC
Q 028537 195 KLEGKV 200 (207)
Q Consensus 195 ~~~Gkl 200 (207)
..+|+|
T Consensus 84 ~~~G~I 89 (101)
T d1qc7a_ 84 EEAGEI 89 (101)
T ss_dssp HHTTCC
T ss_pred HHCCCE
Confidence 788877
No 20
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=60.98 E-value=12 Score=26.24 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHhcCC
Q 028537 133 MRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGK 199 (207)
Q Consensus 133 IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~RRL~~~Gk 199 (207)
|.|++.+|-....+|....-+|..|-.-+.-.|..+|-.+..- +...-|...+|+-|+| |.+.|+
T Consensus 9 i~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~-~kr~TitsreIqtAvr-L~LPge 73 (92)
T d1tzyb_ 9 VYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHY-NKRSTITSREIQTAVR-LLLPGE 73 (92)
T ss_dssp HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSEECHHHHHHHHH-HHSCHH
T ss_pred HHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHH-HHCcHH
Confidence 8888888887777888888889998888888898899887653 3456788999999998 444443
No 21
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=47.26 E-value=7.3 Score=26.10 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=18.8
Q ss_pred HHHHHhcCCHHHH----HHHHHHHhcC
Q 028537 105 MQAILNQFTEDQM----NRYESFRRSA 127 (207)
Q Consensus 105 m~~Ll~~fteEQl----dRYE~fRRS~ 127 (207)
++++..|||++|. .||+.||+..
T Consensus 30 i~AvtGNMdee~r~WFc~Ry~~Yc~q~ 56 (66)
T d1rrza_ 30 ILAVTGNMDEEHRTWFCARYAWYCQQM 56 (66)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 4568899999997 6999998753
No 22
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=45.41 E-value=48 Score=23.70 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 164 ELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 164 ELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
+|...|..+.. .....-|.++|+++|+.
T Consensus 258 ~~l~~a~~~A~-~~~~~~It~~~V~~A~~ 285 (287)
T d1w5sa2 258 VALKMACEMAE-AMGRDSLSEDLVRKAVS 285 (287)
T ss_dssp HHHHHHHHHHH-HTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCCCCCHHHHHHHHh
Confidence 44555665543 44567899999999985
No 23
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=38.69 E-value=16 Score=26.29 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 028537 166 VETARMVMTERNESGPIRPCHIREAYRRLK 195 (207)
Q Consensus 166 VEeAr~Vq~E~~e~gPLqP~HIREA~RRL~ 195 (207)
++.|..+.. +.....|.++||++|.+++.
T Consensus 246 l~~a~~~A~-~~~~~~I~~edv~~A~~~~~ 274 (276)
T d1fnna2 246 LYRSAYAAQ-QNGRKHIAPEDVRKSSKEVL 274 (276)
T ss_dssp HHHHHHHHH-HTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHH-HcCCCCcCHHHHHHHHHHHh
Confidence 455555433 44667999999999999874
No 24
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.22 E-value=23 Score=25.83 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=25.2
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHhcCC-CCCCCC
Q 028537 168 TARMVMTERNESGPIRPCHIREAYRRLKLEGK-VPKRSV 205 (207)
Q Consensus 168 eAr~Vq~E~~e~gPLqP~HIREA~RRL~~~Gk-lP~rs~ 205 (207)
+.+.+-..|...-|=.| ++.++|+.|+.+|- +|.-.+
T Consensus 107 kil~ll~~Wa~~f~~~~-~~~~~Y~~Lk~~Gv~fp~p~~ 144 (151)
T d1juqa_ 107 KVIELLYSWTMALPEEA-KIKDAYHMLKRQGIVQSDPPI 144 (151)
T ss_dssp HHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTSCSSCCCB
T ss_pred HHHHHHHHHHHHccccH-HHHHHHHHHHHcCCCCCCCCC
Confidence 45555567876656344 69999999999994 444333
No 25
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=28.97 E-value=71 Score=22.01 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=47.4
Q ss_pred CCChhHHHHHHH----HhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028537 127 ALQKSNMRRLLV----SITGSQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYR 192 (207)
Q Consensus 127 ~F~K~~IKRLi~----~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~Vq~E~~e~gPLqP~HIREA~R 192 (207)
=++|...-|||. .+...-.+......++--.+-.|+-++-|.|-.+.-..+ +--|.|..|+-|.|
T Consensus 21 LIpk~pF~RLVRei~~~~~~~~r~~~~Al~aLQea~E~yLv~lfeda~~~a~Hak-RvTl~~kD~~Larr 89 (95)
T d1tzyc_ 21 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK-RVTIMPKDIQLARR 89 (95)
T ss_dssp CSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CSEECHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCCCCEeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcC-CCcCCHHHHHHHHH
Confidence 355655555544 444444577788899999999999999999987766543 55699999998755
No 26
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=26.28 E-value=31 Score=22.85 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCChhHHHHHHH
Q 028537 101 KMAKMQAILNQFTEDQMNRYESFRRSALQKSNMRRLLV 138 (207)
Q Consensus 101 ~~~km~~Ll~~fteEQldRYE~fRRS~F~K~~IKRLi~ 138 (207)
...++.+++.+||+++.+.=+. |+.+-++||..
T Consensus 11 ~l~r~eaiI~SMT~~ER~~P~l-----l~~SR~~RIA~ 43 (69)
T d1dula_ 11 VLVRMEAIINSMTMKERAKPEI-----IKGSRKRRIAA 43 (69)
T ss_dssp HHHHHHHHHHTSCHHHHHCGGG-----CCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHhChHh-----hchhHHHHHHc
Confidence 3478999999999999876544 56677788753
No 27
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.95 E-value=27 Score=25.20 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCChhH-----HHHHHHHhcCCCCCCccHHH
Q 028537 117 MNRYESFRRSALQKSN-----MRRLLVSITGSQKISLPMTI 152 (207)
Q Consensus 117 ldRYE~fRRS~F~K~~-----IKRLi~~vtgsqsVs~nvvI 152 (207)
-.||+.| |++.. +||-||+..+--.||.+-+|
T Consensus 8 ~aRy~~~----F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii 44 (105)
T d1v54e_ 8 DARWVTY----FNKPDIDAWELRKGMNTLVGYDLVPEPKII 44 (105)
T ss_dssp HHHHHHH----HTCTTCCHHHHHHHHHHHTTSSBCCCHHHH
T ss_pred HHHHHHH----hcCcCccHHHHHHHHHHHhccccCCCcHHH
Confidence 4699998 77776 89999999887677776443
No 28
>d1fc2c_ a.8.1.1 (C:) Immunoglobulin-binding protein A modules {Staphylococcus aureus [TaxId: 1280]}
Probab=23.64 E-value=19 Score=22.29 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhcCCCCCCccH
Q 028537 116 QMNRYESFRRSALQKSNMRRLLVSITGSQKISLPM 150 (207)
Q Consensus 116 QldRYE~fRRS~F~K~~IKRLi~~vtgsqsVs~nv 150 (207)
|-.-||..+=-+|+-...+-+|++.-...+.|.|+
T Consensus 6 q~Af~Eil~lPNLne~Qrn~fI~SLkDDPsqSan~ 40 (44)
T d1fc2c_ 6 QNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANL 40 (44)
T ss_dssp HHHHHHHHTCSSSCTHHHHHHHHHHHHCTTTTTCC
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHhccCchhhHHH
Confidence 34457888888888888888898887665666654
No 29
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.51 E-value=33 Score=24.66 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=23.7
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHhcCCCC
Q 028537 168 TARMVMTERNESGPIRPCHIREAYRRLKLEGKVP 201 (207)
Q Consensus 168 eAr~Vq~E~~e~gPLqP~HIREA~RRL~~~GklP 201 (207)
+++.+-..|...=|=.| +|+++|..|+.+|-|+
T Consensus 106 kil~li~~Wa~~f~~~~-~~~~~y~~Lk~~Gvi~ 138 (143)
T d1mhqa_ 106 RVIEILFSWTVWFPEDI-KIRDAYQMLKKQGIIK 138 (143)
T ss_dssp HHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCCc-hHHHHHHHHHHCCCCC
Confidence 34445556765445456 5999999999999886
No 30
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=23.24 E-value=16 Score=23.19 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.3
Q ss_pred CCchHHHHHHHHHHhcCCC
Q 028537 182 IRPCHIREAYRRLKLEGKV 200 (207)
Q Consensus 182 LqP~HIREA~RRL~~~Gkl 200 (207)
+-+.=+|+|+++|..+|-|
T Consensus 37 vSr~tvr~Al~~L~~~Gli 55 (69)
T d2hs5a1 37 VSRNTVREAFQILIEDRLV 55 (69)
T ss_dssp CCHHHHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHHHHCCcE
Confidence 3355689999999999965
No 31
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=22.55 E-value=56 Score=23.45 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=38.2
Q ss_pred CccHHHHHHHHHHHHHHHHHH----HHH-HHHHHhccCCCCCchHHHHH-------HHHHHhcCCC
Q 028537 147 SLPMTIVVCGIAKMFVGELVE----TAR-MVMTERNESGPIRPCHIREA-------YRRLKLEGKV 200 (207)
Q Consensus 147 s~nvvIavaGlAKvFVGELVE----eAr-~Vq~E~~e~gPLqP~HIREA-------~RRL~~~Gkl 200 (207)
.+.+++++.+...-++-.+.+ .++ .|..+....||+.+..|.+| .|+|..+|+|
T Consensus 144 ~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A~~~i~~~~~~l~~~G~i 209 (213)
T d1lkvx_ 144 TRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEEAGEI 209 (213)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 356788888888888877776 233 44455667899999997554 4566677765
No 32
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.90 E-value=50 Score=23.89 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcc---CCCCCchHHHHHHHHHHhcCCC
Q 028537 165 LVETARMVMTERNE---SGPIRPCHIREAYRRLKLEGKV 200 (207)
Q Consensus 165 LVEeAr~Vq~E~~e---~gPLqP~HIREA~RRL~~~Gkl 200 (207)
+-++++.+-..|.. ..| .-.+|.++|..|+.+|--
T Consensus 113 Vk~kil~li~~W~~~f~~~p-~~~~i~~~y~~Lk~~G~~ 150 (153)
T d1elka_ 113 VHDKVLNLIQSWADAFRSSP-DLTGVVTIYEDLRRKGLE 150 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhcCCc-cchHHHHHHHHHHHCCCC
Confidence 45667777777853 223 457899999999999943
No 33
>d1f6va_ a.49.1.1 (A:) C-terminal domain of B transposition protein {Bacteriophage mu [TaxId: 10677]}
Probab=20.46 E-value=18 Score=25.54 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=18.0
Q ss_pred hccCCCCCchHHHHHHHHHHhc
Q 028537 176 RNESGPIRPCHIREAYRRLKLE 197 (207)
Q Consensus 176 ~~e~gPLqP~HIREA~RRL~~~ 197 (207)
.++..+|.+.|||.||+-|..+
T Consensus 61 ~g~g~~v~~~~Ir~A~~~ld~d 82 (91)
T d1f6va_ 61 HGKGERVNEDYLRQAFRELDLD 82 (91)
T ss_dssp CTTSCCSSHHHHHHHHTSSCSS
T ss_pred CCCCCcCCHHHHHHHHHHhhhh
Confidence 3567899999999999877544
No 34
>d1bh9a_ a.22.1.3 (A:) TAF(II)18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.15 E-value=84 Score=18.93 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 028537 132 NMRRLLVSITGSQKISLPMTIVVCGIAKMFVGELVETARMV 172 (207)
Q Consensus 132 ~IKRLi~~vtgsqsVs~nvvIavaGlAKvFVGELVEeAr~V 172 (207)
-|+.+|=..=..+.+.+..+.+|--|---||.+|.-+|.+|
T Consensus 5 ei~~mMy~~GD~~~P~~ETv~llEdiv~~~i~~~~~~A~~v 45 (45)
T d1bh9a_ 5 ELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45 (45)
T ss_dssp HHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 36666544322344566678888888889999999888764
Done!